HHsearch alignment for GI: 254780426 and conserved domain: cd04627

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48  E-value=3.2e-13  Score=106.50  Aligned_cols=115  Identities=14%  Similarity=0.241  Sum_probs=94.6

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHH--HH-CCCCEEEC
Q ss_conf             9998630103677897986598179984188664224102999998766223564322333457678--85-15657971
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSES--NL-IKNILFVP  175 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~--~~-~r~~~~Vp  175 (320)
T Consensus         3 fi~v~~~~sl~~a~~lm~~~~i~rlpVvd~~~g~lvGIiT~~dil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~viti~   82 (123)
T cd04627           3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISIN   82 (123)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCCEEEC
T ss_conf             64848989299999999749977799995899949999997999999986376566144541120023323767717989


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHH
Q ss_conf             78851232343201356511654077662046675889
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDI  213 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDI  213 (320)
T Consensus        83 ~d~~l~~A~~lM~~~~i~~lpVVD~~g~lvGiiS~~Dl  120 (123)
T cd04627          83 GDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHE
T ss_conf             99959999999998098878698599969999892542