HHsearch alignment for GI: 254780426 and conserved domain: cd04633
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=2.7e-13 Score=106.96 Aligned_cols=115 Identities=20% Similarity=0.274 Sum_probs=95.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCC---CCCCCCCHHHHC-CCCEE
Q ss_conf 29998630103677897986598179984188664224102999998766223564322---333457678851-56579
Q gi|254780426|r 98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNI---NLNIQLSESNLI-KNILF 173 (320)
Q Consensus 98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~---~~~~~~~l~~~~-r~~~~ 173 (320)
T Consensus 2 ~vvtv~~~~tl~ea~~~m~~~~i~~lpVvd~--~~~vGiiT~~Di~~~l~~~~~~~~~~~~~~~~~~~~V~~iM~~~~~t 79 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVIT 79 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEHHHHHHHHHHCCCCCCCHHHCCCCCCCEEECCCCCCCEE
T ss_conf 9479799398999999999709988999989--99887875999999997446533201102451366855334379889
Q ss_pred ECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf 717885123234320135651165407766204667588999
Q gi|254780426|r 174 VPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS 215 (320)
Q Consensus 174 Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle 215 (320)
T Consensus 80 v~~~~~l~~~~~~m~~~~~~~lpVvd~-~~lvGIIT~~Dilr 120 (121)
T cd04633 80 IEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred EECCCCHHHHHHHHHHHCCEEEEEEEC-CEEEEEEEHHHHHC
T ss_conf 909898999999989719859999989-99999998346028