HHsearch alignment for GI: 254780426 and conserved domain: cd04635
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=3.9e-14 Score=112.52 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=96.7
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCC--CCCCCCCCCCCHHHHCC-CCEEE
Q ss_conf 2999863010367789798659817998418866422410299999876622356--43223334576788515-65797
Q gi|254780426|r 98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAK--TNNINLNIQLSESNLIK-NILFV 174 (320)
Q Consensus 98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~--~~~~~~~~~~~l~~~~r-~~~~V 174 (320)
T Consensus 2 ~vitv~~d~~l~~a~~~m~~~~i~~lPVVd~~g-~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~itv 80 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAG-ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSV 80 (122)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCC-CEEEEEEHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHCCCCCEEE
T ss_conf 999968929799999999971994899991898-2999999899876554001200344314534689999686898799
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf 17885123234320135651165407766204667588999
Q gi|254780426|r 175 PSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS 215 (320)
Q Consensus 175 pe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle 215 (320)
T Consensus 81 ~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiIt~~Dilr 121 (122)
T cd04635 81 TPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 89693999999889809988989937998999999799636