HHsearch alignment for GI: 254780426 and conserved domain: cd04642

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51  E-value=9.7e-14  Score=109.88  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=93.0

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCC-------CCCCCCCHHHHCC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322-------3334576788515
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNI-------NLNIQLSESNLIK  169 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~-------~~~~~~~l~~~~r  169 (320)
T Consensus         1 s~Vitv~~~~~l~eA~~lm~~~~i~~lPVvd~~g-~lvGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEKG-KLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCC-EEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             9579999959999999999980987899992899-099999989976555144303444455554203344234202447


Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             6579717885123234320135651165407766204667588999
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
T Consensus        80 ~~itv~~~~~l~~~~~~m~~~~i~~lpVVD~~~~lvGIIs~~Dil~  125 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf             9989999693999999999869749999989995999999289421