HHsearch alignment for GI: 254780426 and conserved domain: cd04642
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=9.7e-14 Score=109.88 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=93.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCC-------CCCCCCCHHHHCC
Q ss_conf 129998630103677897986598179984188664224102999998766223564322-------3334576788515
Q gi|254780426|r 97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNI-------NLNIQLSESNLIK 169 (320)
Q Consensus 97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~-------~~~~~~~l~~~~r 169 (320)
T Consensus 1 s~Vitv~~~~~l~eA~~lm~~~~i~~lPVvd~~g-~lvGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEKG-KLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCC-EEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 9579999959999999999980987899992899-099999989976555144303444455554203344234202447
Q ss_pred CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf 6579717885123234320135651165407766204667588999
Q gi|254780426|r 170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS 215 (320)
Q Consensus 170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle 215 (320)
T Consensus 80 ~~itv~~~~~l~~~~~~m~~~~i~~lpVVD~~~~lvGIIs~~Dil~ 125 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 9989999693999999999869749999989995999999289421