HHsearch alignment for GI: 254780426 and conserved domain: cd04643

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53  E-value=7.2e-14  Score=110.74  Aligned_cols=115  Identities=17%  Similarity=0.304  Sum_probs=95.4

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
T Consensus         1 k~Vvtv~~~~tl~~A~~~m~~~~i~~lPVvd~~g-klvGiit~~Di~~~~~~~~~~--~~~~~~~~~V~~iM~~~~~tv~   77 (116)
T cd04643           1 EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEG-KYVGTISLTDILWKLKGLENL--DLERLVDLKVIDVMNTDVPVII   77 (116)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHCCCCC--CHHHHCCCCHHHHHCCCCEEEE
T ss_conf             9769999949299999999974998798986999-499998899999987436532--2023116687795156988990


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
T Consensus        78 ~~~~i~~~~~~m~~~~--~lpVVD~~~~lvGIITr~DilkA  116 (116)
T cd04643          78 DDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA  116 (116)
T ss_pred             CCCCHHHHHHHHHHCC--EEEEEECCCEEEEEEEHHHHHCC
T ss_conf             7999999999998789--89999459999999992795579