HHsearch alignment for GI: 254780427 and conserved domain: TIGR00043
>TIGR00043 TIGR00043 conserved hypothetical protein TIGR00043; InterPro: IPR002036 These, as yet, uncharacterised proteins are of 17 to 21 kDa. They contain a conserved region with three histidines at the C terminus. The crystal structure of the protein from the hyperthermophilic bacteria Aquifex aeolicus has been determined. The overall fold consists of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Structure-based homology analysis reveals a good resemblance to the metal-dependent proteinases such as collagenases and gelatinases. However, experimental tests for collagenase and gelatinase-type function show no detectable activity under standard assay conditions ..
Probab=100.00 E-value=0 Score=294.22 Aligned_cols=109 Identities=47% Similarity=0.758 Sum_probs=101.2
Q ss_pred EEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCC----------CCCCC----CCHHEEEEEHHHHHHHHHHHCC
Q ss_conf 389999857799999999985048985156632556677----------76565----3002046518888744666189
Q gi|254780427|r 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----------DGCSS----LMLGDIVLAYEIIEIEANVLGK 120 (171)
Q Consensus 55 ~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~----------~~~~~----~~LGDIvIs~~~i~~eA~~~~~ 120 (171)
T Consensus 1 ~~~s~~f~D~~~i~~lN~~yR~~D~pTDVlSFp~~~~~~~~~~Ed~~~~~~~~~~def~~lGDivis~e~~~~~A~e~~~ 80 (123)
T TIGR00043 1 IELSLLFVDDEEIQELNREYRDKDYPTDVLSFPYEEEEPFLEDEDEPDAGGFPEKDEFEVLGDIVISLEVAKEQAKEYGH 80 (123)
T ss_pred CEEEEEEECCHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCC
T ss_conf 91368875748899998997157877743205767678888776643446787310245431122046899999987289
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 8999999999998998638889988999999999999999868
Q gi|254780427|r 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 (171)
Q Consensus 121 ~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~ 163 (171)
T Consensus 81 ~~~~El~~l~vHG~LHLlGYDH~~~~e~~~M~~~e~~~L~~~g 123 (123)
T TIGR00043 81 SFERELAHLTVHGLLHLLGYDHEEEDEEKEMFALEEEILALLG 123 (123)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999998568999881789999999999998509