HHsearch alignment of GI: 254780427 and MMDB domain: 1tvi_A_
>1tvi_A (A:) Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima}
Probab=100.00 E-value=1.4e-45 Score=283.97 Aligned_cols=146 Identities=27% Similarity=0.413 Sum_probs=121.2
Q ss_pred CCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 35430588885485211113525799999999999974322014667438999985779999999998504898515663
Q gi|254780427|r 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 (171)
Q Consensus 7 ~~~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSF 86 (171)
.+.++.|+|..+...+.... .+.+++..++... .+.++|||.|||+++|++||++|||+|+|||||||
T Consensus 18 ~~~~~~I~i~n~~~~~~~~~--------~~~~~~~~~l~~~----~~~~eisi~fvd~~~i~~LN~~yr~kd~pTDVLSF 85 (172)
T 1tvi_A 18 YFQGHMIRILGEGKGSKLLE--------NLKEKLEEIVKKE----IGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTF 85 (172)
T ss_dssp -----CCEEEECSTTHHHHH--------HSHHHHHHHHHHH----TSCCCCEEEECCHHHHHHHHHTTTCCCCCCSEECC
T ss_pred EHHHCCHHHHCCCHHHHHHH--------HHHHHHHHHHHHH----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 11010022206762899999--------9999999999854----48769999999989999999999479987664775
Q ss_pred CCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHC---
Q ss_conf 2556677765653002046518888744666189899999999999899863888998-899999999999999986---
Q gi|254780427|r 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDL--- 162 (171)
Q Consensus 87 P~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~-~~~~~~M~~~E~~iL~~l--- 162 (171)
|+.+ ..+|||||||+++|.+||.++++++.+|++++++||+|||+||||++ ++++.+|+.+|+++|+++
T Consensus 86 p~~e-------~~~lGDI~Is~e~v~~qA~e~~~~~~~el~~l~iHGiLHLlGyDH~~~~~e~~~M~~~E~~iL~~l~~~ 158 (172)
T 1tvi_A 86 PLME-------EDVYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKKYVEEVWGE 158 (172)
T ss_dssp CCCS-------SSCCSEEEECHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCSSCCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCC-------CCCCCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0455-------555666656589999999995751999999999999999718888998689999999999999999841
Q ss_pred CCCCCCCCC
Q ss_conf 888864479
Q gi|254780427|r 163 GINDPYEVD 171 (171)
Q Consensus 163 ~i~~PY~~~ 171 (171)
|++|||.++
T Consensus 159 ~~~np~~~~ 167 (172)
T 1tvi_A 159 WRSNPSEDS 167 (172)
T ss_dssp HTTSCSCSC
T ss_pred CCCCCCCCC
T ss_conf 888976678