Query gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 171 No_of_seqs 112 out of 1735 Neff 7.0 Searched_HMMs 33803 Date Wed Jun 1 12:52:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780427.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1xm5_A Hypothetical UPF0054 p 100.0 0 0 295.2 19.3 150 11-171 4-153 (155) 2 >1xax_A Hypothetical UPF0054 p 100.0 0 0 294.2 16.4 152 9-171 2-153 (154) 3 >1tvi_A Hypothetical UPF0054 p 100.0 1.4E-45 0 284.0 11.4 146 7-171 18-167 (172) 4 >1oz9_A Hypothetical protein A 100.0 2.4E-44 0 276.1 16.1 144 9-165 5-149 (150) 5 >1lml_A Leishmanolysin; metall 88.5 0.23 6.9E-06 27.7 1.9 43 94-143 134-176 (197) 6 >1slm_A Stromelysin-1; hydrola 59.7 6.7 0.0002 19.3 2.5 24 124-147 110-133 (138) 7 >3lmc_A Peptidase, zinc-depend 58.7 10 0.0003 18.3 3.2 43 102-144 116-161 (210) 8 >1cge_A Fibroblast collagenase 54.2 9.4 0.00028 18.4 2.5 24 123-146 108-131 (135) 9 >3edh_A Bone morphogenetic pro 50.0 8.5 0.00025 18.7 1.7 19 126-144 87-105 (106) 10 >3ba0_A Macrophage metalloelas 50.0 8.6 0.00025 18.6 1.7 24 124-147 105-128 (133) 11 >3lq0_A Proastacin; metallopep 49.5 6.7 0.0002 19.3 1.1 21 125-145 119-139 (235) 12 >1qib_A Protein (gelatinase A) 49.4 12 0.00037 17.7 2.5 22 125-146 108-129 (133) 13 >1sat_A Serratia protease; par 47.6 13 0.00039 17.6 2.4 31 116-146 119-149 (168) 14 >1kap_P Alkaline protease; cal 47.5 15 0.00043 17.3 2.6 28 119-146 116-143 (162) 15 >2ovx_A Matrix metalloproteina 44.5 16 0.00049 17.0 2.5 25 123-147 108-132 (136) 16 >1hv5_A Stromelysin 3; inhibit 44.2 17 0.00049 17.0 2.5 23 124-146 111-133 (138) 17 >1k7i_A PROC, secreted proteas 42.6 18 0.00053 16.8 2.4 33 114-146 111-143 (162) 18 >1eak_A 72 kDa type IV collage 41.0 20 0.00059 16.5 2.5 46 100-146 91-136 (171) 19 >1hy7_A Stromelysin-1, MMP-3; 39.6 19 0.00056 16.6 2.2 24 123-146 110-133 (173) 20 >830c_A MMP-13, MMP-13; matrix 38.9 22 0.00065 16.3 2.4 27 120-146 107-133 (168) 21 >1g9k_A Serralysin; beta jelly 38.2 13 0.00039 17.6 1.2 29 119-147 108-136 (156) 22 >2qga_B Adenylosuccinate lyase 37.5 12 0.00036 17.7 0.9 13 157-169 8-20 (61) 23 >2ptr_A Adenylosuccinate lyase 36.4 13 0.00039 17.6 0.9 14 156-169 7-20 (59) 24 >3bhg_A Adenylosuccinate lyase 35.3 14 0.00041 17.5 0.9 14 156-169 7-20 (59) 25 >2ejq_A Hypothetical protein T 33.4 22 0.00066 16.3 1.7 57 100-156 63-120 (130) 26 >1ck7_A Protein (gelatinase A) 33.4 31 0.00093 15.4 2.5 80 51-145 53-135 (140) 27 >1bqq_M CDMT1-MMP, membrane-ty 27.0 43 0.0013 14.6 2.7 26 121-146 115-140 (174) 28 >1mmq_A Matrilysin; metallopro 25.4 45 0.0013 14.5 2.2 26 121-146 109-134 (170) 29 >2a97_A BONT/F, botulinum neur 22.9 41 0.0012 14.7 1.6 40 101-140 190-239 (363) 30 >1rm8_A MMP-16, matrix metallo 22.8 52 0.0015 14.1 2.3 25 123-147 114-138 (169) 31 >3k9t_A Putative peptidase; st 20.1 23 0.00069 16.1 -0.2 10 134-143 25-34 (59) No 1 >>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} (A:) Probab=100.00 E-value=0 Score=295.18 Aligned_cols=150 Identities=36% Similarity=0.594 Sum_probs=124.5 Q ss_pred EEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCC Q ss_conf 05888854852111135257999999999999743220146674389999857799999999985048985156632556 Q gi|254780427|r 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 (171) Q Consensus 11 i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~ 90 (171) +.++|.+.+..|.... ... .+.+++..++... ...++|||.|||+++|++||++|||+|+||||||||+.+ T Consensus 4 ~~~~i~i~~~~~~~~~-~~~----~~~~~~~~~~~~~----~~~~eisi~~vdd~~i~~LN~~yr~~d~pTDVLSFp~~~ 74 (155) T 1xm5_A 4 VILDLQLACEDNSGLP-EES----QFQTWLNAVIPQF----QEESEVTIRVVDTAESHSLNLTYRGKDKPTNVLSFPFEV 74 (155) T ss_dssp EEEEEEECSSSCCSCC-CHH----HHHHHHHTTSHHH----HSEEEEEEEEECHHHHHHHHHHHHCCSSCCSEEEEECCC T ss_pred EEEEEEEECCCCCCCC-CHH----HHHHHHHHHHHHC----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEEECCC T ss_conf 5999887437855888-999----9999999999836----898489999999899999999985458886458763447 Q ss_pred CCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 67776565300204651888874466618989999999999989986388899889999999999999998688886447 Q gi|254780427|r 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 (171) Q Consensus 91 ~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~~PY~~ 170 (171) ... ....+|||||||+++|.+||.++|+++.+|+++|+|||+|||+||||+++++++.|+.+|+++|+.+|+++||.. T Consensus 75 ~~~--~~~~~LGDI~Is~~~~~~qA~~~~~s~~~el~~l~vHG~LHLlGyDH~~~~e~~~M~~~E~~iL~~lg~~~py~~ 152 (155) T 1xm5_A 75 PPG--MEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIA 152 (155) T ss_dssp CSS--CCCCEEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHTTCCCSCCC T ss_pred CCC--CCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 887--664434425664999998998809978897678889999997378889817999999999999998699998766 Q ss_pred C Q ss_conf 9 Q gi|254780427|r 171 D 171 (171) Q Consensus 171 ~ 171 (171) + T Consensus 153 ~ 153 (155) T 1xm5_A 153 E 153 (155) T ss_dssp - T ss_pred C T ss_conf 6 No 2 >>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae} (A:) Probab=100.00 E-value=0 Score=294.16 Aligned_cols=152 Identities=33% Similarity=0.569 Sum_probs=128.4 Q ss_pred CCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECC Q ss_conf 43058888548521111352579999999999997432201466743899998577999999999850489851566325 Q gi|254780427|r 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 (171) Q Consensus 9 ~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~ 88 (171) +.|.++|.+.+..|..... .. .+.+++..++.. ....++|||.|||+++|++||++|||+|+||||||||+ T Consensus 2 ~~m~~~i~~~n~~~~~~~~-~~----~~~~~~~~~~~~----~~~~~elsi~~vd~~~i~~lN~~~r~~d~pTDVLSFp~ 72 (154) T 1xax_A 2 GSVLVDLQIATENIEGLPT-EE----QIVQWATGAVQP----EGNEVEMTVRIVDEAESHELNLTYRGKDRPTNVLSFPF 72 (154) T ss_dssp -CEEEEEEECCSSCSSCCT-HH----HHHHHHHHHHSS----SCCCEEEEEEECCHHHHHHHHHHHTCCCSSCSEEEECC T ss_pred CCEEEEEEEECCCCCCCCC-HH----HHHHHHHHHHHH----CCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEEEC T ss_conf 8179998873488657989-99----999999999985----18976999999888999999999967998875588504 Q ss_pred CCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 56677765653002046518888744666189899999999999899863888998899999999999999986888864 Q gi|254780427|r 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 (171) Q Consensus 89 ~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~~PY 168 (171) .+.. ..+..+||||+||+++|.+||.++++++.+|+++|+|||+|||+||||.+++++++|+.+|+++|+.+|+++|| T Consensus 73 ~e~~--~~~~~~LGdI~I~~e~i~~qa~~~~~~~~~el~~l~iHG~LHLlGyDH~~~~e~~~M~~~E~~iL~~l~~~~py 150 (154) T 1xax_A 73 ECPD--EVELPLLGDLVICRQVVEREASEQEKPLMAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPY 150 (154) T ss_dssp CCSS--CCCCCCCBEEEECHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCCCCTTTHHHHHHHHHHHHHTTTTC---- T ss_pred CCCC--CCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 5886--42211256545629999999999789999998999999999972788998689999999999999986999987 Q ss_pred CCC Q ss_conf 479 Q gi|254780427|r 169 EVD 171 (171) Q Consensus 169 ~~~ 171 (171) ..+ T Consensus 151 ~~~ 153 (154) T 1xax_A 151 LAE 153 (154) T ss_dssp --- T ss_pred CCC T ss_conf 667 No 3 >>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} (A:) Probab=100.00 E-value=1.4e-45 Score=283.97 Aligned_cols=146 Identities=27% Similarity=0.413 Sum_probs=121.2 Q ss_pred CCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 35430588885485211113525799999999999974322014667438999985779999999998504898515663 Q gi|254780427|r 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 (171) Q Consensus 7 ~~~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSF 86 (171) .+.++.|+|..+...+.... .+.+++..++... .+.++|||.|||+++|++||++|||+|+||||||| T Consensus 18 ~~~~~~I~i~n~~~~~~~~~--------~~~~~~~~~l~~~----~~~~eisi~fvd~~~i~~LN~~yr~kd~pTDVLSF 85 (172) T 1tvi_A 18 YFQGHMIRILGEGKGSKLLE--------NLKEKLEEIVKKE----IGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTF 85 (172) T ss_dssp -----CCEEEECSTTHHHHH--------HSHHHHHHHHHHH----TSCCCCEEEECCHHHHHHHHHTTTCCCCCCSEECC T ss_pred EHHHCCHHHHCCCHHHHHHH--------HHHHHHHHHHHHH----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEE T ss_conf 11010022206762899999--------9999999999854----48769999999989999999999479987664775 Q ss_pred CCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHC--- Q ss_conf 2556677765653002046518888744666189899999999999899863888998-899999999999999986--- Q gi|254780427|r 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDL--- 162 (171) Q Consensus 87 P~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~-~~~~~~M~~~E~~iL~~l--- 162 (171) |+.+ ..+|||||||+++|.+||.++++++.+|++++++||+|||+||||++ ++++.+|+.+|+++|+++ T Consensus 86 p~~e-------~~~lGDI~Is~e~v~~qA~e~~~~~~~el~~l~iHGiLHLlGyDH~~~~~e~~~M~~~E~~iL~~l~~~ 158 (172) T 1tvi_A 86 PLME-------EDVYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKKYVEEVWGE 158 (172) T ss_dssp CCCS-------SSCCSEEEECHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCSSCCTTSCCHHHHHHHHHHHHHHHHH T ss_pred CCCC-------CCCCCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 0455-------555666656589999999995751999999999999999718888998689999999999999999841 Q ss_pred CCCCCCCCC Q ss_conf 888864479 Q gi|254780427|r 163 GINDPYEVD 171 (171) Q Consensus 163 ~i~~PY~~~ 171 (171) |++|||.++ T Consensus 159 ~~~np~~~~ 167 (172) T 1tvi_A 159 WRSNPSEDS 167 (172) T ss_dssp HTTSCSCSC T ss_pred CCCCCCCCC T ss_conf 888976678 No 4 >>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSGC structure funded by NIH; 1.89A {Aquifex aeolicus} (A:) Probab=100.00 E-value=2.4e-44 Score=276.10 Aligned_cols=144 Identities=34% Similarity=0.451 Sum_probs=120.3 Q ss_pred CCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECC Q ss_conf 43058888548521111352579999999999997432201466743899998577999999999850489851566325 Q gi|254780427|r 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 (171) Q Consensus 9 ~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~ 88 (171) ..++|+|.++...+.. ... .+..++..++...+ .+.++|||.|||+++|++||++|||+|+||||||||+ T Consensus 5 ~~~~i~i~~~~~~~~~---~~~----~l~~~~~~~l~~~~---~~~~elsi~~vd~~~i~~lN~~yr~kd~pTDVLSFp~ 74 (150) T 1oz9_A 5 KRQKNRVLVKLKKRKV---RKD----KIEKWAELALSALG---LNNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPM 74 (150) T ss_dssp ---CCEEEEEESSCSS---CHH----HHHHHHHHHHHHTT---CCSEEEEEEEECHHHHHHHHHHHHSCCSCCSEEEEEC T ss_pred HHHHHEEHHHHHHCCC---CHH----HHHHHHHHHHHHCC---CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEECC T ss_conf 4545100333344226---999----99999999999849---9874899999888999999999967999865576435 Q ss_pred CCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHCCCC Q ss_conf 56677765653002046518888744666189899999999999899863888998-899999999999999986888 Q gi|254780427|r 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGIN 165 (171) Q Consensus 89 ~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~-~~~~~~M~~~E~~iL~~l~i~ 165 (171) ..... ...+||||+||+++|.+||.++++++.+|++++++||+|||+||||.+ +++++.|+++|+++|+++|++ T Consensus 75 ~~~~~---~~~~lGDI~Is~~~i~~qa~~~~~~~~~e~~~l~iHG~LHLlGyDH~~~~ee~~~M~~~E~~iL~~lg~~ 149 (150) T 1oz9_A 75 GEEFG---GYKILGDVVISQDTAERQARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFRELENYVLSKLSKA 149 (150) T ss_dssp CCEET---TEEEEEEEEEEHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHHC- T ss_pred CCCCC---CCCCCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 44334---5522355001499999999990999999999999999999807888999899999999999999997521 No 5 >>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} (A:1-172,A:268-292) Probab=88.49 E-value=0.23 Score=27.70 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=33.1 Q ss_pred CCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 76565300204651888874466618989999999999989986388899 Q gi|254780427|r 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 (171) Q Consensus 94 ~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~ 143 (171) +....+..|-|.||+..+... ..+.+.+.++|=+.|.|||=-. T Consensus 134 d~~~RPi~G~i~inp~~i~~~-------~~~~~~~~~~HEi~HaLG~~~~ 176 (197) T 1lml_A 134 FSDGHPAVGVINIPAANIASR-------YDQLVTRVVTHEMAHALGFYQA 176 (197) T ss_dssp CTTSCEEEEEEECCGGGCCCS-------CCHHHHHHHHHHHHHHTTSCEE T ss_pred CCCCCCEEEEEECCHHHCCCC-------CCHHHHHHHHHHHHHHHCCCEE T ss_conf 667896630663377567863-------0068999999999876418075 No 6 >>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} (A:84-221) Probab=59.66 E-value=6.7 Score=19.26 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 999999999899863888998899 Q gi|254780427|r 124 NHLVHLIIHGFLHLLGYDHVDDKD 147 (171) Q Consensus 124 ~e~~~l~iHG~LHLlGydH~~~~~ 147 (171) ..+...++|-+.|.||..|..+.+ T Consensus 110 ~~~~~v~~HEiGHaLGL~H~~~~~ 133 (138) T 1slm_A 110 TNLFLVAAHEIGHSLGLFHSANTE 133 (138) T ss_dssp EEHHHHHHHHHHHHTTCCCCSCTT T ss_pred CCHHHHHHHHHCCCCCCCCCCCCC T ss_conf 414555456423114778789987 No 7 >>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Methanocorpusculum labreanum} (A:) Probab=58.74 E-value=10 Score=18.25 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=30.2 Q ss_pred HEEEEEHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 204651888874466---6189899999999999899863888998 Q gi|254780427|r 102 GDIVLAYEIIEIEAN---VLGKEFENHLVHLIIHGFLHLLGYDHVD 144 (171) Q Consensus 102 GDIvIs~~~i~~eA~---~~~~~~~~e~~~l~iHG~LHLlGydH~~ 144 (171) |=-|+|.-+...+.- +...-+...++..++|.+-|++|.+|=. T Consensus 116 ~vaVvS~~Rl~~~~~~~~~~~~l~~~R~~K~~~HElGHl~GL~HC~ 161 (210) T 3lmc_A 116 GVAIVSPHRLQNEFYGKYADDSALIDRIVKEGAHEIGHLFGLGHCD 161 (210) T ss_dssp TEEEECGGGTSGGGGTCCCCHHHHHHHHHHHHHHHHHHHTTCCCCS T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 8899980214743257887578999999999999889874887889 No 8 >>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} (A:1-135) Probab=54.16 E-value=9.4 Score=18.42 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 999999999989986388899889 Q gi|254780427|r 123 ENHLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 123 ~~e~~~l~iHG~LHLlGydH~~~~ 146 (171) .......++|-+.|.||..|..+. T Consensus 108 ~~~~~~v~~HEiGHaLGL~H~~~~ 131 (135) T 1cge_A 108 EYNLHRVAAHELGHSLGLSHSTDI 131 (135) T ss_dssp SCBHHHHHHHHHHHHTTCCCCSCT T ss_pred CCCCEEEEEEECCCCCCCCCCCCC T ss_conf 543068763301100168988998 No 9 >>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} PDB: 3edg_A 3edi_A (A:1-106) Probab=50.02 E-value=8.5 Score=18.66 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHCCCCCCC Q ss_conf 9999999899863888998 Q gi|254780427|r 126 LVHLIIHGFLHLLGYDHVD 144 (171) Q Consensus 126 ~~~l~iHG~LHLlGydH~~ 144 (171) ....++|=+.|.||+.|+. T Consensus 87 ~~~tv~HEigHALGl~Heh 105 (106) T 3edh_A 87 KFGIVVHELGHVVGFWHEH 105 (106) T ss_dssp SHHHHHHHHHHHHTBCCGG T ss_pred CCCHHHHHHHHHHCCCHHH T ss_conf 7631578888885364175 No 10 >>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A (A:1-133) Probab=49.95 E-value=8.6 Score=18.64 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=19.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 999999999899863888998899 Q gi|254780427|r 124 NHLVHLIIHGFLHLLGYDHVDDKD 147 (171) Q Consensus 124 ~e~~~l~iHG~LHLlGydH~~~~~ 147 (171) ..+...++|-+.|.||..|..+.. T Consensus 105 ~~~~~v~~HEiGHALGL~H~~~~~ 128 (133) T 3ba0_A 105 TNLFLTAVHEIGHSLGLGHSSDPK 128 (133) T ss_dssp EESSHHHHHHHHHHHTCCCCSCTT T ss_pred CCCEEEEHHHHHHHCCCCCCCCCC T ss_conf 552010012244320778756434 No 11 >>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, zinc, disulfide bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A (A:) Probab=49.52 E-value=6.7 Score=19.25 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCH Q ss_conf 999999998998638889988 Q gi|254780427|r 125 HLVHLIIHGFLHLLGYDHVDD 145 (171) Q Consensus 125 e~~~l~iHG~LHLlGydH~~~ 145 (171) .....++|=+.|.||+.|+.. T Consensus 119 ~~~~~v~HElgHaLGl~HEh~ 139 (235) T 3lq0_A 119 VYHGTILHALMHAIGFYHEHT 139 (235) T ss_dssp CSHHHHHHHHHHHHHBCCGGG T ss_pred CCCCHHHHHHHHHHCCCCHHH T ss_conf 765545899898856740431 No 12 >>1qib_A Protein (gelatinase A); inhibitor, matrixin, matrix metalloproteinase-2 (MMP-2), metzincin, hydrolase; 2.80A {Homo sapiens} (A:1-133) Probab=49.45 E-value=12 Score=17.72 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCHH Q ss_conf 9999999989986388899889 Q gi|254780427|r 125 HLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 125 e~~~l~iHG~LHLlGydH~~~~ 146 (171) .+...++|-+-|.||..|+... T Consensus 108 ~~~~v~~HEiGHaLGL~H~~~~ 129 (133) T 1qib_A 108 SLFLVAAHEFGHAMGLEHSQDP 129 (133) T ss_dssp EHHHHHHHHHHHHHTCCCCSCT T ss_pred CEEEEEEEECCCCCCCCCCCCC T ss_conf 2135531210423478889998 No 13 >>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} (A:42-209) Probab=47.58 E-value=13 Score=17.57 Aligned_cols=31 Identities=29% Similarity=0.249 Sum_probs=23.3 Q ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 6618989999999999989986388899889 Q gi|254780427|r 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 116 ~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~ 146 (171) ..........+...++|-+.|.||..|..+. T Consensus 119 ~~~~~~~~~~~~~t~~HEiGHALGL~H~~~~ 149 (168) T 1sat_A 119 NVKHPATEDYGRQTFTHEIGHALGLSHPGDY 149 (168) T ss_dssp HHHCTTTCHHHHHHHHHHHHHHHTCCCSSCC T ss_pred CCCCCCCCCCCCEEEEEECCCHHHCCCCCCC T ss_conf 2247777764420000120652112544101 No 14 >>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa PAO1} (P:57-218) Probab=47.54 E-value=15 Score=17.31 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=21.3 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 8989999999999989986388899889 Q gi|254780427|r 119 GKEFENHLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 119 ~~~~~~e~~~l~iHG~LHLlGydH~~~~ 146 (171) .......+...++|=+.|.||..|+... T Consensus 116 ~~~~~~~~~~v~~HEiGHaLGL~H~~~~ 143 (162) T 1kap_P 116 NPANGNYGRQTLTHEIGHTLGLSHPGDY 143 (162) T ss_dssp SCCTTSHHHHHHHHHHHHHHTCCCSSSC T ss_pred CCCCCCHHHHEEHHHHHHHCCCCCCCCC T ss_conf 7777852331001021143048785434 No 15 >>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP- 9) (92 kDa type IV collagenase) (92...; hydrolase, S1-prime pocket; HET: 4MR; 2.00A {Homo sapiens} (A:1-136) Probab=44.53 E-value=16 Score=17.02 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.0 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 9999999999899863888998899 Q gi|254780427|r 123 ENHLVHLIIHGFLHLLGYDHVDDKD 147 (171) Q Consensus 123 ~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171) .......++|-+-|.||.+|..+.+ T Consensus 108 ~~~~~~v~~HEiGHaLGL~H~~~~~ 132 (136) T 2ovx_A 108 GYSLFLVAAHQFGHALGLDHSSVPE 132 (136) T ss_dssp SEEHHHHHHHHHHHHTTCCCCSCTT T ss_pred CCCEEEEEEEECCCCCCCCCCCCCC T ss_conf 6312477631025433689899997 No 16 >>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} (A:1-138) Probab=44.19 E-value=17 Score=16.97 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=19.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 99999999989986388899889 Q gi|254780427|r 124 NHLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 124 ~e~~~l~iHG~LHLlGydH~~~~ 146 (171) ..+...++|-+-|.||..|..+. T Consensus 111 ~~~~~t~~HEiGHaLGL~H~~~~ 133 (138) T 1hv5_A 111 TDLLQVAAHEFGHVLGLQHTTAA 133 (138) T ss_dssp EEHHHHHHHHHHHHTTCCCCSCT T ss_pred CHHHHHHHHHHHHHCCCCCCCCC T ss_conf 22677776654222057899999 No 17 >>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} (A:60-221) Probab=42.55 E-value=18 Score=16.78 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=24.7 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 466618989999999999989986388899889 Q gi|254780427|r 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 114 eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~ 146 (171) ............+...++|=+.|.||..|..+. T Consensus 111 ~~~~~~~~~g~~~~~t~~HEiGHaLGL~H~~~~ 143 (162) T 1k7i_A 111 QSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEY 143 (162) T ss_dssp SHHHHCTTTSHHHHHHHHHHHHHHHTCCCSSSC T ss_pred CCCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCC T ss_conf 665447676753210234211200456783212 No 18 >>1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase, gelatinase A; 2.66A {Homo sapiens} (A:80-191,A:363-421) Probab=41.05 E-value=20 Score=16.52 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=26.1 Q ss_pred CHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 00204651888874466618989999999999989986388899889 Q gi|254780427|r 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 100 ~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~ 146 (171) .-|||-+--+....... ....-...+.-.++|=+.|.||..|.... T Consensus 91 ~~g~ihfd~~e~w~~~~-~~~~~~~~~~~~~~HEiGHaLGL~H~~~~ 136 (171) T 1eak_A 91 VGGDSHFDDDELWTLGE-GQVVRGYSLFLVAAHQFGHAMGLEHSQDP 136 (171) T ss_dssp TTTCEEEETTSCEESSS-SCCCBCEEHHHHHHHHHHHHTTCCCCSCT T ss_pred CCCCEECCCCCCEECCC-CCEEECCCEEEEEHHHHCCCCCCCCCCCC T ss_conf 88645016432444266-60000655566541032331356667998 No 19 >>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrolase; HET: MBS; 1.50A {Homo sapiens} (A:) Probab=39.57 E-value=19 Score=16.64 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 999999999989986388899889 Q gi|254780427|r 123 ENHLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 123 ~~e~~~l~iHG~LHLlGydH~~~~ 146 (171) ...+...++|-+-|.||..|..+. T Consensus 110 ~~~~~~t~~HEiGHaLGL~H~~~~ 133 (173) T 1hy7_A 110 GTNLFLVAAHEIGHSLGLFHSANT 133 (173) T ss_dssp SEEHHHHHHHHHHHHHTBCCCSCT T ss_pred CHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 024566778765122078999986 No 20 >>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} (A:) Probab=38.85 E-value=22 Score=16.29 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=20.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 989999999999989986388899889 Q gi|254780427|r 120 KEFENHLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 120 ~~~~~e~~~l~iHG~LHLlGydH~~~~ 146 (171) ......+.-.++|-+-|.||.+|..+. T Consensus 107 ~~~~~~~~~v~~HElGHaLGL~H~~~~ 133 (168) T 830c_A 107 SSKGYNLFLVAAHEFGHSLGLDHSKDP 133 (168) T ss_dssp SSSSEEHHHHHHHHHHHHTTBCCCSCT T ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCC T ss_conf 677733356652201445587888999 No 21 >>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} (A:49-204) Probab=38.17 E-value=13 Score=17.57 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=22.8 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 89899999999999899863888998899 Q gi|254780427|r 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 (171) Q Consensus 119 ~~~~~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171) ....-......++|=+.|.||..|..+.. T Consensus 108 ~~~~~~~~~~~~~HEiGHaLGL~H~~~~~ 136 (156) T 1g9k_A 108 TPGEGNYGRQTLTHEIGHTLGLSHPGDYN 136 (156) T ss_dssp SCCTTSHHHHHHHHHHHHHHTCCCSSCCC T ss_pred CCCCCCEEEEEHHHHHHHHCCCCCCCCCC T ss_conf 76777322332244555650688775445 No 22 >>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural genomics consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A (B:384-444) Probab=37.45 E-value=12 Score=17.75 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=9.6 Q ss_pred HHHHHCCCCCCCC Q ss_conf 9999868888644 Q gi|254780427|r 157 SILEDLGINDPYE 169 (171) Q Consensus 157 ~iL~~l~i~~PY~ 169 (171) -+|...|++|||+ T Consensus 8 TvmRr~g~~~pYE 20 (61) T 2qga_B 8 IVMKRHNYVDAYE 20 (61) T ss_dssp HHHHHTTCSCHHH T ss_pred HHHHCCCHHHHHH T ss_conf 9984448798999 No 23 >>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A (A:384-442) Probab=36.43 E-value=13 Score=17.57 Aligned_cols=14 Identities=36% Similarity=0.952 Sum_probs=10.7 Q ss_pred HHHHHHCCCCCCCC Q ss_conf 99999868888644 Q gi|254780427|r 156 RSILEDLGINDPYE 169 (171) Q Consensus 156 ~~iL~~l~i~~PY~ 169 (171) +-+|...|++|||+ T Consensus 7 QTvmRr~g~~~pYE 20 (59) T 2ptr_A 7 QTVMRRYGIEKPYE 20 (59) T ss_dssp HHHHHHTTCSSHHH T ss_pred HHHHHHCCCHHHHH T ss_conf 99998708787999 No 24 >>3bhg_A Adenylosuccinate lyase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Legionella pneumophila subsp} (A:387-445) Probab=35.30 E-value=14 Score=17.45 Aligned_cols=14 Identities=14% Similarity=0.403 Sum_probs=10.4 Q ss_pred HHHHHHCCCCCCCC Q ss_conf 99999868888644 Q gi|254780427|r 156 RSILEDLGINDPYE 169 (171) Q Consensus 156 ~~iL~~l~i~~PY~ 169 (171) +-+|...|++|||+ T Consensus 7 QTvmRr~g~~~pYE 20 (59) T 3bhg_A 7 QTVXRRYNEPNAYE 20 (59) T ss_dssp HHHHHHTTCTTHHH T ss_pred HHHHHCCCHHHHHH T ss_conf 99986058076999 No 25 >>2ejq_A Hypothetical protein TTHA0227; NPPSFA, national project on protein structural and functional analyses; 2.08A {Thermus thermophilus} (A:) Probab=33.43 E-value=22 Score=16.26 Aligned_cols=57 Identities=19% Similarity=0.128 Sum_probs=39.0 Q ss_pred CHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHH Q ss_conf 0020465188887446661898999999999998998638889988-99999999999 Q gi|254780427|r 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLER 156 (171) Q Consensus 100 ~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~-~~~~~M~~~E~ 156 (171) .+++-|+=|-.-....-.-.-.+.+.+.+.++|-+=|.+|++-..- .....|+.++. T Consensus 63 ~~p~rIvlYR~pi~~~~~~~~el~~~V~~tlvhEiahhlG~~~e~iD~~~~e~~~l~~ 120 (130) T 2ejq_A 63 DLGRHIALYYGSFLEVAGEGFDWEAEVWETMLHELRHHLESLAGRDDLVQEDLRRLDA 120 (130) T ss_dssp GGCCEEEEEHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC------------ T ss_pred CCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 9998887433589998668504999999999999999887624668978889999999 No 26 >>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} (A:82-193,A:365-392) Probab=33.36 E-value=31 Score=15.39 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=42.0 Q ss_pred CCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHH---HHHHHHCCCHHHHHH Q ss_conf 66743899998577999999999850489851566325566777656530020465188887---446661898999999 Q gi|254780427|r 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE---IEANVLGKEFENHLV 127 (171) Q Consensus 51 ~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~---~eA~~~~~~~~~e~~ 127 (171) ......|.|.|..... ....--|++..||++..... ...-|+|-+-.+.-. ......+ .++. T Consensus 53 ~~~~AdI~i~f~~~~h-----~~~~~fdG~~g~lahA~~p~------~~~~g~ihfd~~e~wt~~~~~~~~~----~~~~ 117 (140) T 1ck7_A 53 HDGEADIMINFGRWEH-----GDGYPFDGKDGLLAHAFAPG------TGVGGDSHFDDDELWTLGEGQVVRG----YSLF 117 (140) T ss_dssp SSSCCSEEEEEECSSC-----SSSCCCCSSSSBCEEECCSS------STTTTCEEEETTSCEESSSSCCCBC----EEHH T ss_pred CCCCCCEEEEEECCCC-----CCCCCCCCCCCEEEEECCCC------CCCCCCEEECCHHHHHCCCCCCCCC----CCCE T ss_conf 7899897998305766-----89988678897568723798------8888557735245320366421017----7534 Q ss_pred HHHHHHHHHHCCCCCCCH Q ss_conf 999998998638889988 Q gi|254780427|r 128 HLIIHGFLHLLGYDHVDD 145 (171) Q Consensus 128 ~l~iHG~LHLlGydH~~~ 145 (171) ..++|-+.|.||..|+.. T Consensus 118 ~~~~he~~h~~g~~h~~~ 135 (140) T 1ck7_A 118 LVAAHAFGHAMGLEHSQD 135 (140) T ss_dssp HHHHHHHHHHHTCCCCCC T ss_pred EEEEEEECCCCCCCCCCC T ss_conf 776575024657787888 No 27 >>1bqq_M CDMT1-MMP, membrane-type matrix metalloproteinase, MMP-14; matrix metalloproteinase, tissue inhibitor of metalloproteinases, proteinase complex; 2.75A {Homo sapiens} (M:) Probab=26.99 E-value=43 Score=14.58 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=20.7 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 89999999999989986388899889 Q gi|254780427|r 121 EFENHLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 121 ~~~~e~~~l~iHG~LHLlGydH~~~~ 146 (171) .-...+...++|-+=|.||.+|.... T Consensus 115 ~~~~~~~~v~~HEiGHaLGL~H~~~~ 140 (174) T 1bqq_M 115 LNGNDIFLVAVHELGHALGLEHSSDP 140 (174) T ss_dssp CSSCBHHHHHHHHHHHTTTCCCCSCT T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCC T ss_conf 65305899999987654068889998 No 28 >>1mmq_A Matrilysin; metalloprotease; HET: RRS; 1.90A {Homo sapiens} (A:) Probab=25.44 E-value=45 Score=14.46 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=20.2 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHH Q ss_conf 89999999999989986388899889 Q gi|254780427|r 121 EFENHLVHLIIHGFLHLLGYDHVDDK 146 (171) Q Consensus 121 ~~~~e~~~l~iHG~LHLlGydH~~~~ 146 (171) .....+...++|-+-|.||..|.... T Consensus 109 ~~~~~~~~v~~HEiGHaLGL~H~~~~ 134 (170) T 1mmq_A 109 SLGINFLYAATHELGHSLGMGHSSDP 134 (170) T ss_dssp SSSEEHHHHHHHHHHHHHTBCCCSCT T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 43234655423211112378998999 No 29 >>2a97_A BONT/F, botulinum neurotoxin type F, bontoxilysin F; clostridium botulinum neurotoxin serotype F, light chain, catalytic domain, X-RAY,; 1.80A {Clostridium botulinum} PDB: 2a8a_A 3fie_A 3fii_A (A:1-275,A:352-439) Probab=22.94 E-value=41 Score=14.70 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=31.2 Q ss_pred HHEEEEEHHHHHHHH----------HHHCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 020465188887446----------6618989999999999989986388 Q gi|254780427|r 101 LGDIVLAYEIIEIEA----------NVLGKEFENHLVHLIIHGFLHLLGY 140 (171) Q Consensus 101 LGDIvIs~~~i~~eA----------~~~~~~~~~e~~~l~iHG~LHLlGy 140 (171) +-.|-+||+....-. .++-....=+|.|-+||.+--|.|- T Consensus 190 i~~I~FsPe~~~~fndv~~n~~~s~~~F~~DPAl~LmheLIh~Lh~LYGi 239 (363) T 2a97_A 190 INIVTFSPEYEYTFNDISGGHNSSTESFIADPAISLAHELIHALHGLYGA 239 (363) T ss_dssp CEEEECCTTEEEEEC----------CCEECCHHHHHHHHHHHHHHHHTTC T ss_pred EEEEEECCCEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC T ss_conf 48999745247861233457777756522288999999999988764361 No 30 >>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} (A:) Probab=22.79 E-value=52 Score=14.12 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=20.0 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf 9999999999899863888998899 Q gi|254780427|r 123 ENHLVHLIIHGFLHLLGYDHVDDKD 147 (171) Q Consensus 123 ~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171) ...+....+|.+-|.||.+|..+.+ T Consensus 114 ~~~~~~v~~HEiGH~LGL~H~~d~~ 138 (169) T 1rm8_A 114 GNDLFLVAVHELGHALGLEHSNDPT 138 (169) T ss_dssp SEEHHHHHHHHHHHHHTCCCCSCTT T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 5256777777776652678789998 No 31 >>3k9t_A Putative peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.37A {Clostridium acetobutylicum} (A:69-112,A:151-165) Probab=20.07 E-value=23 Score=16.12 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=5.8 Q ss_pred HHHHCCCCCC Q ss_conf 9986388899 Q gi|254780427|r 134 FLHLLGYDHV 143 (171) Q Consensus 134 ~LHLlGydH~ 143 (171) -||++||... T Consensus 25 NLHvlgYS~P 34 (59) T 3k9t_A 25 NLHVXSYSVP 34 (59) T ss_dssp GGGBCBTCCC T ss_pred CEEEEECCCC T ss_conf 3688645665 Done!