Query         gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 171
No_of_seqs    112 out of 1735
Neff          7.0 
Searched_HMMs 33803
Date          Wed Jun  1 12:52:54 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780427.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1xm5_A Hypothetical UPF0054 p 100.0       0       0  295.2  19.3  150   11-171     4-153 (155)
  2 >1xax_A Hypothetical UPF0054 p 100.0       0       0  294.2  16.4  152    9-171     2-153 (154)
  3 >1tvi_A Hypothetical UPF0054 p 100.0 1.4E-45       0  284.0  11.4  146    7-171    18-167 (172)
  4 >1oz9_A Hypothetical protein A 100.0 2.4E-44       0  276.1  16.1  144    9-165     5-149 (150)
  5 >1lml_A Leishmanolysin; metall  88.5    0.23 6.9E-06   27.7   1.9   43   94-143   134-176 (197)
  6 >1slm_A Stromelysin-1; hydrola  59.7     6.7  0.0002   19.3   2.5   24  124-147   110-133 (138)
  7 >3lmc_A Peptidase, zinc-depend  58.7      10  0.0003   18.3   3.2   43  102-144   116-161 (210)
  8 >1cge_A Fibroblast collagenase  54.2     9.4 0.00028   18.4   2.5   24  123-146   108-131 (135)
  9 >3edh_A Bone morphogenetic pro  50.0     8.5 0.00025   18.7   1.7   19  126-144    87-105 (106)
 10 >3ba0_A Macrophage metalloelas  50.0     8.6 0.00025   18.6   1.7   24  124-147   105-128 (133)
 11 >3lq0_A Proastacin; metallopep  49.5     6.7  0.0002   19.3   1.1   21  125-145   119-139 (235)
 12 >1qib_A Protein (gelatinase A)  49.4      12 0.00037   17.7   2.5   22  125-146   108-129 (133)
 13 >1sat_A Serratia protease; par  47.6      13 0.00039   17.6   2.4   31  116-146   119-149 (168)
 14 >1kap_P Alkaline protease; cal  47.5      15 0.00043   17.3   2.6   28  119-146   116-143 (162)
 15 >2ovx_A Matrix metalloproteina  44.5      16 0.00049   17.0   2.5   25  123-147   108-132 (136)
 16 >1hv5_A Stromelysin 3; inhibit  44.2      17 0.00049   17.0   2.5   23  124-146   111-133 (138)
 17 >1k7i_A PROC, secreted proteas  42.6      18 0.00053   16.8   2.4   33  114-146   111-143 (162)
 18 >1eak_A 72 kDa type IV collage  41.0      20 0.00059   16.5   2.5   46  100-146    91-136 (171)
 19 >1hy7_A Stromelysin-1, MMP-3;   39.6      19 0.00056   16.6   2.2   24  123-146   110-133 (173)
 20 >830c_A MMP-13, MMP-13; matrix  38.9      22 0.00065   16.3   2.4   27  120-146   107-133 (168)
 21 >1g9k_A Serralysin; beta jelly  38.2      13 0.00039   17.6   1.2   29  119-147   108-136 (156)
 22 >2qga_B Adenylosuccinate lyase  37.5      12 0.00036   17.7   0.9   13  157-169     8-20  (61)
 23 >2ptr_A Adenylosuccinate lyase  36.4      13 0.00039   17.6   0.9   14  156-169     7-20  (59)
 24 >3bhg_A Adenylosuccinate lyase  35.3      14 0.00041   17.5   0.9   14  156-169     7-20  (59)
 25 >2ejq_A Hypothetical protein T  33.4      22 0.00066   16.3   1.7   57  100-156    63-120 (130)
 26 >1ck7_A Protein (gelatinase A)  33.4      31 0.00093   15.4   2.5   80   51-145    53-135 (140)
 27 >1bqq_M CDMT1-MMP, membrane-ty  27.0      43  0.0013   14.6   2.7   26  121-146   115-140 (174)
 28 >1mmq_A Matrilysin; metallopro  25.4      45  0.0013   14.5   2.2   26  121-146   109-134 (170)
 29 >2a97_A BONT/F, botulinum neur  22.9      41  0.0012   14.7   1.6   40  101-140   190-239 (363)
 30 >1rm8_A MMP-16, matrix metallo  22.8      52  0.0015   14.1   2.3   25  123-147   114-138 (169)
 31 >3k9t_A Putative peptidase; st  20.1      23 0.00069   16.1  -0.2   10  134-143    25-34  (59)

No 1  
>>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} (A:)
Probab=100.00  E-value=0  Score=295.18  Aligned_cols=150  Identities=36%  Similarity=0.594  Sum_probs=124.5

Q ss_pred             EEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf             05888854852111135257999999999999743220146674389999857799999999985048985156632556
Q gi|254780427|r   11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF   90 (171)
Q Consensus        11 i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~   90 (171)
                      +.++|.+.+..|.... ...    .+.+++..++...    ...++|||.|||+++|++||++|||+|+||||||||+.+
T Consensus         4 ~~~~i~i~~~~~~~~~-~~~----~~~~~~~~~~~~~----~~~~eisi~~vdd~~i~~LN~~yr~~d~pTDVLSFp~~~   74 (155)
T 1xm5_A            4 VILDLQLACEDNSGLP-EES----QFQTWLNAVIPQF----QEESEVTIRVVDTAESHSLNLTYRGKDKPTNVLSFPFEV   74 (155)
T ss_dssp             EEEEEEECSSSCCSCC-CHH----HHHHHHHTTSHHH----HSEEEEEEEEECHHHHHHHHHHHHCCSSCCSEEEEECCC
T ss_pred             EEEEEEEECCCCCCCC-CHH----HHHHHHHHHHHHC----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             5999887437855888-999----9999999999836----898489999999899999999985458886458763447


Q ss_pred             CCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             67776565300204651888874466618989999999999989986388899889999999999999998688886447
Q gi|254780427|r   91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV  170 (171)
Q Consensus        91 ~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~~PY~~  170 (171)
                      ...  ....+|||||||+++|.+||.++|+++.+|+++|+|||+|||+||||+++++++.|+.+|+++|+.+|+++||..
T Consensus        75 ~~~--~~~~~LGDI~Is~~~~~~qA~~~~~s~~~el~~l~vHG~LHLlGyDH~~~~e~~~M~~~E~~iL~~lg~~~py~~  152 (155)
T 1xm5_A           75 PPG--MEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIA  152 (155)
T ss_dssp             CSS--CCCCEEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             CCC--CCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             887--664434425664999998998809978897678889999997378889817999999999999998699998766


Q ss_pred             C
Q ss_conf             9
Q gi|254780427|r  171 D  171 (171)
Q Consensus       171 ~  171 (171)
                      +
T Consensus       153 ~  153 (155)
T 1xm5_A          153 E  153 (155)
T ss_dssp             -
T ss_pred             C
T ss_conf             6


No 2  
>>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae} (A:)
Probab=100.00  E-value=0  Score=294.16  Aligned_cols=152  Identities=33%  Similarity=0.569  Sum_probs=128.4

Q ss_pred             CCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             43058888548521111352579999999999997432201466743899998577999999999850489851566325
Q gi|254780427|r    9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT   88 (171)
Q Consensus         9 ~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~   88 (171)
                      +.|.++|.+.+..|..... ..    .+.+++..++..    ....++|||.|||+++|++||++|||+|+||||||||+
T Consensus         2 ~~m~~~i~~~n~~~~~~~~-~~----~~~~~~~~~~~~----~~~~~elsi~~vd~~~i~~lN~~~r~~d~pTDVLSFp~   72 (154)
T 1xax_A            2 GSVLVDLQIATENIEGLPT-EE----QIVQWATGAVQP----EGNEVEMTVRIVDEAESHELNLTYRGKDRPTNVLSFPF   72 (154)
T ss_dssp             -CEEEEEEECCSSCSSCCT-HH----HHHHHHHHHHSS----SCCCEEEEEEECCHHHHHHHHHHHTCCCSSCSEEEECC
T ss_pred             CCEEEEEEEECCCCCCCCC-HH----HHHHHHHHHHHH----CCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             8179998873488657989-99----999999999985----18976999999888999999999967998875588504


Q ss_pred             CCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             56677765653002046518888744666189899999999999899863888998899999999999999986888864
Q gi|254780427|r   89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY  168 (171)
Q Consensus        89 ~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~~PY  168 (171)
                      .+..  ..+..+||||+||+++|.+||.++++++.+|+++|+|||+|||+||||.+++++++|+.+|+++|+.+|+++||
T Consensus        73 ~e~~--~~~~~~LGdI~I~~e~i~~qa~~~~~~~~~el~~l~iHG~LHLlGyDH~~~~e~~~M~~~E~~iL~~l~~~~py  150 (154)
T 1xax_A           73 ECPD--EVELPLLGDLVICRQVVEREASEQEKPLMAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPY  150 (154)
T ss_dssp             CCSS--CCCCCCCBEEEECHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCCCCTTTHHHHHHHHHHHHHTTTTC----
T ss_pred             CCCC--CCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             5886--42211256545629999999999789999998999999999972788998689999999999999986999987


Q ss_pred             CCC
Q ss_conf             479
Q gi|254780427|r  169 EVD  171 (171)
Q Consensus       169 ~~~  171 (171)
                      ..+
T Consensus       151 ~~~  153 (154)
T 1xax_A          151 LAE  153 (154)
T ss_dssp             ---
T ss_pred             CCC
T ss_conf             667


No 3  
>>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} (A:)
Probab=100.00  E-value=1.4e-45  Score=283.97  Aligned_cols=146  Identities=27%  Similarity=0.413  Sum_probs=121.2

Q ss_pred             CCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             35430588885485211113525799999999999974322014667438999985779999999998504898515663
Q gi|254780427|r    7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF   86 (171)
Q Consensus         7 ~~~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSF   86 (171)
                      .+.++.|+|..+...+....        .+.+++..++...    .+.++|||.|||+++|++||++|||+|+|||||||
T Consensus        18 ~~~~~~I~i~n~~~~~~~~~--------~~~~~~~~~l~~~----~~~~eisi~fvd~~~i~~LN~~yr~kd~pTDVLSF   85 (172)
T 1tvi_A           18 YFQGHMIRILGEGKGSKLLE--------NLKEKLEEIVKKE----IGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTF   85 (172)
T ss_dssp             -----CCEEEECSTTHHHHH--------HSHHHHHHHHHHH----TSCCCCEEEECCHHHHHHHHHTTTCCCCCCSEECC
T ss_pred             EHHHCCHHHHCCCHHHHHHH--------HHHHHHHHHHHHH----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             11010022206762899999--------9999999999854----48769999999989999999999479987664775


Q ss_pred             CCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHC---
Q ss_conf             2556677765653002046518888744666189899999999999899863888998-899999999999999986---
Q gi|254780427|r   87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDL---  162 (171)
Q Consensus        87 P~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~-~~~~~~M~~~E~~iL~~l---  162 (171)
                      |+.+       ..+|||||||+++|.+||.++++++.+|++++++||+|||+||||++ ++++.+|+.+|+++|+++   
T Consensus        86 p~~e-------~~~lGDI~Is~e~v~~qA~e~~~~~~~el~~l~iHGiLHLlGyDH~~~~~e~~~M~~~E~~iL~~l~~~  158 (172)
T 1tvi_A           86 PLME-------EDVYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKKYVEEVWGE  158 (172)
T ss_dssp             CCCS-------SSCCSEEEECHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCSSCCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-------CCCCCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             0455-------555666656589999999995751999999999999999718888998689999999999999999841


Q ss_pred             CCCCCCCCC
Q ss_conf             888864479
Q gi|254780427|r  163 GINDPYEVD  171 (171)
Q Consensus       163 ~i~~PY~~~  171 (171)
                      |++|||.++
T Consensus       159 ~~~np~~~~  167 (172)
T 1tvi_A          159 WRSNPSEDS  167 (172)
T ss_dssp             HTTSCSCSC
T ss_pred             CCCCCCCCC
T ss_conf             888976678


No 4  
>>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSGC structure funded by NIH; 1.89A {Aquifex aeolicus} (A:)
Probab=100.00  E-value=2.4e-44  Score=276.10  Aligned_cols=144  Identities=34%  Similarity=0.451  Sum_probs=120.3

Q ss_pred             CCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             43058888548521111352579999999999997432201466743899998577999999999850489851566325
Q gi|254780427|r    9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT   88 (171)
Q Consensus         9 ~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~   88 (171)
                      ..++|+|.++...+..   ...    .+..++..++...+   .+.++|||.|||+++|++||++|||+|+||||||||+
T Consensus         5 ~~~~i~i~~~~~~~~~---~~~----~l~~~~~~~l~~~~---~~~~elsi~~vd~~~i~~lN~~yr~kd~pTDVLSFp~   74 (150)
T 1oz9_A            5 KRQKNRVLVKLKKRKV---RKD----KIEKWAELALSALG---LNNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPM   74 (150)
T ss_dssp             ---CCEEEEEESSCSS---CHH----HHHHHHHHHHHHTT---CCSEEEEEEEECHHHHHHHHHHHHSCCSCCSEEEEEC
T ss_pred             HHHHHEEHHHHHHCCC---CHH----HHHHHHHHHHHHCC---CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             4545100333344226---999----99999999999849---9874899999888999999999967999865576435


Q ss_pred             CCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             56677765653002046518888744666189899999999999899863888998-899999999999999986888
Q gi|254780427|r   89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGIN  165 (171)
Q Consensus        89 ~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~-~~~~~~M~~~E~~iL~~l~i~  165 (171)
                      .....   ...+||||+||+++|.+||.++++++.+|++++++||+|||+||||.+ +++++.|+++|+++|+++|++
T Consensus        75 ~~~~~---~~~~lGDI~Is~~~i~~qa~~~~~~~~~e~~~l~iHG~LHLlGyDH~~~~ee~~~M~~~E~~iL~~lg~~  149 (150)
T 1oz9_A           75 GEEFG---GYKILGDVVISQDTAERQARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFRELENYVLSKLSKA  149 (150)
T ss_dssp             CCEET---TEEEEEEEEEEHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCC---CCCCCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             44334---5522355001499999999990999999999999999999807888999899999999999999997521


No 5  
>>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} (A:1-172,A:268-292)
Probab=88.49  E-value=0.23  Score=27.70  Aligned_cols=43  Identities=16%  Similarity=0.279  Sum_probs=33.1

Q ss_pred             CCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             76565300204651888874466618989999999999989986388899
Q gi|254780427|r   94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV  143 (171)
Q Consensus        94 ~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~  143 (171)
                      +....+..|-|.||+..+...       ..+.+.+.++|=+.|.|||=-.
T Consensus       134 d~~~RPi~G~i~inp~~i~~~-------~~~~~~~~~~HEi~HaLG~~~~  176 (197)
T 1lml_A          134 FSDGHPAVGVINIPAANIASR-------YDQLVTRVVTHEMAHALGFYQA  176 (197)
T ss_dssp             CTTSCEEEEEEECCGGGCCCS-------CCHHHHHHHHHHHHHHTTSCEE
T ss_pred             CCCCCCEEEEEECCHHHCCCC-------CCHHHHHHHHHHHHHHHCCCEE
T ss_conf             667896630663377567863-------0068999999999876418075


No 6  
>>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} (A:84-221)
Probab=59.66  E-value=6.7  Score=19.26  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             999999999899863888998899
Q gi|254780427|r  124 NHLVHLIIHGFLHLLGYDHVDDKD  147 (171)
Q Consensus       124 ~e~~~l~iHG~LHLlGydH~~~~~  147 (171)
                      ..+...++|-+.|.||..|..+.+
T Consensus       110 ~~~~~v~~HEiGHaLGL~H~~~~~  133 (138)
T 1slm_A          110 TNLFLVAAHEIGHSLGLFHSANTE  133 (138)
T ss_dssp             EEHHHHHHHHHHHHTTCCCCSCTT
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             414555456423114778789987


No 7  
>>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Methanocorpusculum labreanum} (A:)
Probab=58.74  E-value=10  Score=18.25  Aligned_cols=43  Identities=21%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             HEEEEEHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             204651888874466---6189899999999999899863888998
Q gi|254780427|r  102 GDIVLAYEIIEIEAN---VLGKEFENHLVHLIIHGFLHLLGYDHVD  144 (171)
Q Consensus       102 GDIvIs~~~i~~eA~---~~~~~~~~e~~~l~iHG~LHLlGydH~~  144 (171)
                      |=-|+|.-+...+.-   +...-+...++..++|.+-|++|.+|=.
T Consensus       116 ~vaVvS~~Rl~~~~~~~~~~~~l~~~R~~K~~~HElGHl~GL~HC~  161 (210)
T 3lmc_A          116 GVAIVSPHRLQNEFYGKYADDSALIDRIVKEGAHEIGHLFGLGHCD  161 (210)
T ss_dssp             TEEEECGGGTSGGGGTCCCCHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             8899980214743257887578999999999999889874887889


No 8  
>>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} (A:1-135)
Probab=54.16  E-value=9.4  Score=18.42  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             999999999989986388899889
Q gi|254780427|r  123 ENHLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       123 ~~e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      .......++|-+.|.||..|..+.
T Consensus       108 ~~~~~~v~~HEiGHaLGL~H~~~~  131 (135)
T 1cge_A          108 EYNLHRVAAHELGHSLGLSHSTDI  131 (135)
T ss_dssp             SCBHHHHHHHHHHHHTTCCCCSCT
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             543068763301100168988998


No 9  
>>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} PDB: 3edg_A 3edi_A (A:1-106)
Probab=50.02  E-value=8.5  Score=18.66  Aligned_cols=19  Identities=21%  Similarity=0.510  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999899863888998
Q gi|254780427|r  126 LVHLIIHGFLHLLGYDHVD  144 (171)
Q Consensus       126 ~~~l~iHG~LHLlGydH~~  144 (171)
                      ....++|=+.|.||+.|+.
T Consensus        87 ~~~tv~HEigHALGl~Heh  105 (106)
T 3edh_A           87 KFGIVVHELGHVVGFWHEH  105 (106)
T ss_dssp             SHHHHHHHHHHHHTBCCGG
T ss_pred             CCCHHHHHHHHHHCCCHHH
T ss_conf             7631578888885364175


No 10 
>>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A (A:1-133)
Probab=49.95  E-value=8.6  Score=18.64  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             999999999899863888998899
Q gi|254780427|r  124 NHLVHLIIHGFLHLLGYDHVDDKD  147 (171)
Q Consensus       124 ~e~~~l~iHG~LHLlGydH~~~~~  147 (171)
                      ..+...++|-+.|.||..|..+..
T Consensus       105 ~~~~~v~~HEiGHALGL~H~~~~~  128 (133)
T 3ba0_A          105 TNLFLTAVHEIGHSLGLGHSSDPK  128 (133)
T ss_dssp             EESSHHHHHHHHHHHTCCCCSCTT
T ss_pred             CCCEEEEHHHHHHHCCCCCCCCCC
T ss_conf             552010012244320778756434


No 11 
>>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, zinc, disulfide bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A (A:)
Probab=49.52  E-value=6.7  Score=19.25  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCH
Q ss_conf             999999998998638889988
Q gi|254780427|r  125 HLVHLIIHGFLHLLGYDHVDD  145 (171)
Q Consensus       125 e~~~l~iHG~LHLlGydH~~~  145 (171)
                      .....++|=+.|.||+.|+..
T Consensus       119 ~~~~~v~HElgHaLGl~HEh~  139 (235)
T 3lq0_A          119 VYHGTILHALMHAIGFYHEHT  139 (235)
T ss_dssp             CSHHHHHHHHHHHHHBCCGGG
T ss_pred             CCCCHHHHHHHHHHCCCCHHH
T ss_conf             765545899898856740431


No 12 
>>1qib_A Protein (gelatinase A); inhibitor, matrixin, matrix metalloproteinase-2 (MMP-2), metzincin, hydrolase; 2.80A {Homo sapiens} (A:1-133)
Probab=49.45  E-value=12  Score=17.72  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             9999999989986388899889
Q gi|254780427|r  125 HLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       125 e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      .+...++|-+-|.||..|+...
T Consensus       108 ~~~~v~~HEiGHaLGL~H~~~~  129 (133)
T 1qib_A          108 SLFLVAAHEFGHAMGLEHSQDP  129 (133)
T ss_dssp             EHHHHHHHHHHHHHTCCCCSCT
T ss_pred             CEEEEEEEECCCCCCCCCCCCC
T ss_conf             2135531210423478889998


No 13 
>>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} (A:42-209)
Probab=47.58  E-value=13  Score=17.57  Aligned_cols=31  Identities=29%  Similarity=0.249  Sum_probs=23.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             6618989999999999989986388899889
Q gi|254780427|r  116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       116 ~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      ..........+...++|-+.|.||..|..+.
T Consensus       119 ~~~~~~~~~~~~~t~~HEiGHALGL~H~~~~  149 (168)
T 1sat_A          119 NVKHPATEDYGRQTFTHEIGHALGLSHPGDY  149 (168)
T ss_dssp             HHHCTTTCHHHHHHHHHHHHHHHTCCCSSCC
T ss_pred             CCCCCCCCCCCCEEEEEECCCHHHCCCCCCC
T ss_conf             2247777764420000120652112544101


No 14 
>>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa PAO1} (P:57-218)
Probab=47.54  E-value=15  Score=17.31  Aligned_cols=28  Identities=25%  Similarity=0.213  Sum_probs=21.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             8989999999999989986388899889
Q gi|254780427|r  119 GKEFENHLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       119 ~~~~~~e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      .......+...++|=+.|.||..|+...
T Consensus       116 ~~~~~~~~~~v~~HEiGHaLGL~H~~~~  143 (162)
T 1kap_P          116 NPANGNYGRQTLTHEIGHTLGLSHPGDY  143 (162)
T ss_dssp             SCCTTSHHHHHHHHHHHHHHTCCCSSSC
T ss_pred             CCCCCCHHHHEEHHHHHHHCCCCCCCCC
T ss_conf             7777852331001021143048785434


No 15 
>>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP- 9) (92 kDa type IV collagenase) (92...; hydrolase, S1-prime pocket; HET: 4MR; 2.00A {Homo sapiens} (A:1-136)
Probab=44.53  E-value=16  Score=17.02  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             9999999999899863888998899
Q gi|254780427|r  123 ENHLVHLIIHGFLHLLGYDHVDDKD  147 (171)
Q Consensus       123 ~~e~~~l~iHG~LHLlGydH~~~~~  147 (171)
                      .......++|-+-|.||.+|..+.+
T Consensus       108 ~~~~~~v~~HEiGHaLGL~H~~~~~  132 (136)
T 2ovx_A          108 GYSLFLVAAHQFGHALGLDHSSVPE  132 (136)
T ss_dssp             SEEHHHHHHHHHHHHTTCCCCSCTT
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf             6312477631025433689899997


No 16 
>>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} (A:1-138)
Probab=44.19  E-value=17  Score=16.97  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             99999999989986388899889
Q gi|254780427|r  124 NHLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       124 ~e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      ..+...++|-+-|.||..|..+.
T Consensus       111 ~~~~~t~~HEiGHaLGL~H~~~~  133 (138)
T 1hv5_A          111 TDLLQVAAHEFGHVLGLQHTTAA  133 (138)
T ss_dssp             EEHHHHHHHHHHHHTTCCCCSCT
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             22677776654222057899999


No 17 
>>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} (A:60-221)
Probab=42.55  E-value=18  Score=16.78  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=24.7

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             466618989999999999989986388899889
Q gi|254780427|r  114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       114 eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      ............+...++|=+.|.||..|..+.
T Consensus       111 ~~~~~~~~~g~~~~~t~~HEiGHaLGL~H~~~~  143 (162)
T 1k7i_A          111 QSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEY  143 (162)
T ss_dssp             SHHHHCTTTSHHHHHHHHHHHHHHHTCCCSSSC
T ss_pred             CCCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCC
T ss_conf             665447676753210234211200456783212


No 18 
>>1eak_A 72 kDa type IV collagenase; hydrolyse, matrix metalloproteinase, gelatinase A; 2.66A {Homo sapiens} (A:80-191,A:363-421)
Probab=41.05  E-value=20  Score=16.52  Aligned_cols=46  Identities=20%  Similarity=0.164  Sum_probs=26.1

Q ss_pred             CHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             00204651888874466618989999999999989986388899889
Q gi|254780427|r  100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       100 ~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      .-|||-+--+....... ....-...+.-.++|=+.|.||..|....
T Consensus        91 ~~g~ihfd~~e~w~~~~-~~~~~~~~~~~~~~HEiGHaLGL~H~~~~  136 (171)
T 1eak_A           91 VGGDSHFDDDELWTLGE-GQVVRGYSLFLVAAHQFGHAMGLEHSQDP  136 (171)
T ss_dssp             TTTCEEEETTSCEESSS-SCCCBCEEHHHHHHHHHHHHTTCCCCSCT
T ss_pred             CCCCEECCCCCCEECCC-CCEEECCCEEEEEHHHHCCCCCCCCCCCC
T ss_conf             88645016432444266-60000655566541032331356667998


No 19 
>>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrolase; HET: MBS; 1.50A {Homo sapiens} (A:)
Probab=39.57  E-value=19  Score=16.64  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             999999999989986388899889
Q gi|254780427|r  123 ENHLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       123 ~~e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      ...+...++|-+-|.||..|..+.
T Consensus       110 ~~~~~~t~~HEiGHaLGL~H~~~~  133 (173)
T 1hy7_A          110 GTNLFLVAAHEIGHSLGLFHSANT  133 (173)
T ss_dssp             SEEHHHHHHHHHHHHHTBCCCSCT
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             024566778765122078999986


No 20 
>>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} (A:)
Probab=38.85  E-value=22  Score=16.29  Aligned_cols=27  Identities=33%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             989999999999989986388899889
Q gi|254780427|r  120 KEFENHLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       120 ~~~~~e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      ......+.-.++|-+-|.||.+|..+.
T Consensus       107 ~~~~~~~~~v~~HElGHaLGL~H~~~~  133 (168)
T 830c_A          107 SSKGYNLFLVAAHEFGHSLGLDHSKDP  133 (168)
T ss_dssp             SSSSEEHHHHHHHHHHHHTTBCCCSCT
T ss_pred             CCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf             677733356652201445587888999


No 21 
>>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} (A:49-204)
Probab=38.17  E-value=13  Score=17.57  Aligned_cols=29  Identities=24%  Similarity=0.195  Sum_probs=22.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             89899999999999899863888998899
Q gi|254780427|r  119 GKEFENHLVHLIIHGFLHLLGYDHVDDKD  147 (171)
Q Consensus       119 ~~~~~~e~~~l~iHG~LHLlGydH~~~~~  147 (171)
                      ....-......++|=+.|.||..|..+..
T Consensus       108 ~~~~~~~~~~~~~HEiGHaLGL~H~~~~~  136 (156)
T 1g9k_A          108 TPGEGNYGRQTLTHEIGHTLGLSHPGDYN  136 (156)
T ss_dssp             SCCTTSHHHHHHHHHHHHHHTCCCSSCCC
T ss_pred             CCCCCCEEEEEHHHHHHHHCCCCCCCCCC
T ss_conf             76777322332244555650688775445


No 22 
>>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural genomics consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A (B:384-444)
Probab=37.45  E-value=12  Score=17.75  Aligned_cols=13  Identities=23%  Similarity=0.437  Sum_probs=9.6

Q ss_pred             HHHHHCCCCCCCC
Q ss_conf             9999868888644
Q gi|254780427|r  157 SILEDLGINDPYE  169 (171)
Q Consensus       157 ~iL~~l~i~~PY~  169 (171)
                      -+|...|++|||+
T Consensus         8 TvmRr~g~~~pYE   20 (61)
T 2qga_B            8 IVMKRHNYVDAYE   20 (61)
T ss_dssp             HHHHHTTCSCHHH
T ss_pred             HHHHCCCHHHHHH
T ss_conf             9984448798999


No 23 
>>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A (A:384-442)
Probab=36.43  E-value=13  Score=17.57  Aligned_cols=14  Identities=36%  Similarity=0.952  Sum_probs=10.7

Q ss_pred             HHHHHHCCCCCCCC
Q ss_conf             99999868888644
Q gi|254780427|r  156 RSILEDLGINDPYE  169 (171)
Q Consensus       156 ~~iL~~l~i~~PY~  169 (171)
                      +-+|...|++|||+
T Consensus         7 QTvmRr~g~~~pYE   20 (59)
T 2ptr_A            7 QTVMRRYGIEKPYE   20 (59)
T ss_dssp             HHHHHHTTCSSHHH
T ss_pred             HHHHHHCCCHHHHH
T ss_conf             99998708787999


No 24 
>>3bhg_A Adenylosuccinate lyase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Legionella pneumophila subsp} (A:387-445)
Probab=35.30  E-value=14  Score=17.45  Aligned_cols=14  Identities=14%  Similarity=0.403  Sum_probs=10.4

Q ss_pred             HHHHHHCCCCCCCC
Q ss_conf             99999868888644
Q gi|254780427|r  156 RSILEDLGINDPYE  169 (171)
Q Consensus       156 ~~iL~~l~i~~PY~  169 (171)
                      +-+|...|++|||+
T Consensus         7 QTvmRr~g~~~pYE   20 (59)
T 3bhg_A            7 QTVXRRYNEPNAYE   20 (59)
T ss_dssp             HHHHHHTTCTTHHH
T ss_pred             HHHHHCCCHHHHHH
T ss_conf             99986058076999


No 25 
>>2ejq_A Hypothetical protein TTHA0227; NPPSFA, national project on protein structural and functional analyses; 2.08A {Thermus thermophilus} (A:)
Probab=33.43  E-value=22  Score=16.26  Aligned_cols=57  Identities=19%  Similarity=0.128  Sum_probs=39.0

Q ss_pred             CHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHH
Q ss_conf             0020465188887446661898999999999998998638889988-99999999999
Q gi|254780427|r  100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLER  156 (171)
Q Consensus       100 ~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~-~~~~~M~~~E~  156 (171)
                      .+++-|+=|-.-....-.-.-.+.+.+.+.++|-+=|.+|++-..- .....|+.++.
T Consensus        63 ~~p~rIvlYR~pi~~~~~~~~el~~~V~~tlvhEiahhlG~~~e~iD~~~~e~~~l~~  120 (130)
T 2ejq_A           63 DLGRHIALYYGSFLEVAGEGFDWEAEVWETMLHELRHHLESLAGRDDLVQEDLRRLDA  120 (130)
T ss_dssp             GGCCEEEEEHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred             CCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             9998887433589998668504999999999999999887624668978889999999


No 26 
>>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} (A:82-193,A:365-392)
Probab=33.36  E-value=31  Score=15.39  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=42.0

Q ss_pred             CCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHH---HHHHHHCCCHHHHHH
Q ss_conf             66743899998577999999999850489851566325566777656530020465188887---446661898999999
Q gi|254780427|r   51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE---IEANVLGKEFENHLV  127 (171)
Q Consensus        51 ~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~---~eA~~~~~~~~~e~~  127 (171)
                      ......|.|.|.....     ....--|++..||++.....      ...-|+|-+-.+.-.   ......+    .++.
T Consensus        53 ~~~~AdI~i~f~~~~h-----~~~~~fdG~~g~lahA~~p~------~~~~g~ihfd~~e~wt~~~~~~~~~----~~~~  117 (140)
T 1ck7_A           53 HDGEADIMINFGRWEH-----GDGYPFDGKDGLLAHAFAPG------TGVGGDSHFDDDELWTLGEGQVVRG----YSLF  117 (140)
T ss_dssp             SSSCCSEEEEEECSSC-----SSSCCCCSSSSBCEEECCSS------STTTTCEEEETTSCEESSSSCCCBC----EEHH
T ss_pred             CCCCCCEEEEEECCCC-----CCCCCCCCCCCEEEEECCCC------CCCCCCEEECCHHHHHCCCCCCCCC----CCCE
T ss_conf             7899897998305766-----89988678897568723798------8888557735245320366421017----7534


Q ss_pred             HHHHHHHHHHCCCCCCCH
Q ss_conf             999998998638889988
Q gi|254780427|r  128 HLIIHGFLHLLGYDHVDD  145 (171)
Q Consensus       128 ~l~iHG~LHLlGydH~~~  145 (171)
                      ..++|-+.|.||..|+..
T Consensus       118 ~~~~he~~h~~g~~h~~~  135 (140)
T 1ck7_A          118 LVAAHAFGHAMGLEHSQD  135 (140)
T ss_dssp             HHHHHHHHHHHTCCCCCC
T ss_pred             EEEEEEECCCCCCCCCCC
T ss_conf             776575024657787888


No 27 
>>1bqq_M CDMT1-MMP, membrane-type matrix metalloproteinase, MMP-14; matrix metalloproteinase, tissue inhibitor of metalloproteinases, proteinase complex; 2.75A {Homo sapiens} (M:)
Probab=26.99  E-value=43  Score=14.58  Aligned_cols=26  Identities=27%  Similarity=0.425  Sum_probs=20.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             89999999999989986388899889
Q gi|254780427|r  121 EFENHLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       121 ~~~~e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      .-...+...++|-+=|.||.+|....
T Consensus       115 ~~~~~~~~v~~HEiGHaLGL~H~~~~  140 (174)
T 1bqq_M          115 LNGNDIFLVAVHELGHALGLEHSSDP  140 (174)
T ss_dssp             CSSCBHHHHHHHHHHHTTTCCCCSCT
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             65305899999987654068889998


No 28 
>>1mmq_A Matrilysin; metalloprotease; HET: RRS; 1.90A {Homo sapiens} (A:)
Probab=25.44  E-value=45  Score=14.46  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             89999999999989986388899889
Q gi|254780427|r  121 EFENHLVHLIIHGFLHLLGYDHVDDK  146 (171)
Q Consensus       121 ~~~~e~~~l~iHG~LHLlGydH~~~~  146 (171)
                      .....+...++|-+-|.||..|....
T Consensus       109 ~~~~~~~~v~~HEiGHaLGL~H~~~~  134 (170)
T 1mmq_A          109 SLGINFLYAATHELGHSLGMGHSSDP  134 (170)
T ss_dssp             SSSEEHHHHHHHHHHHHHTBCCCSCT
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             43234655423211112378998999


No 29 
>>2a97_A BONT/F, botulinum neurotoxin type F, bontoxilysin F; clostridium botulinum neurotoxin serotype F, light chain, catalytic domain, X-RAY,; 1.80A {Clostridium botulinum} PDB: 2a8a_A 3fie_A 3fii_A (A:1-275,A:352-439)
Probab=22.94  E-value=41  Score=14.70  Aligned_cols=40  Identities=18%  Similarity=0.134  Sum_probs=31.2

Q ss_pred             HHEEEEEHHHHHHHH----------HHHCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             020465188887446----------6618989999999999989986388
Q gi|254780427|r  101 LGDIVLAYEIIEIEA----------NVLGKEFENHLVHLIIHGFLHLLGY  140 (171)
Q Consensus       101 LGDIvIs~~~i~~eA----------~~~~~~~~~e~~~l~iHG~LHLlGy  140 (171)
                      +-.|-+||+....-.          .++-....=+|.|-+||.+--|.|-
T Consensus       190 i~~I~FsPe~~~~fndv~~n~~~s~~~F~~DPAl~LmheLIh~Lh~LYGi  239 (363)
T 2a97_A          190 INIVTFSPEYEYTFNDISGGHNSSTESFIADPAISLAHELIHALHGLYGA  239 (363)
T ss_dssp             CEEEECCTTEEEEEC----------CCEECCHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEECCCEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCC
T ss_conf             48999745247861233457777756522288999999999988764361


No 30 
>>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} (A:)
Probab=22.79  E-value=52  Score=14.12  Aligned_cols=25  Identities=32%  Similarity=0.559  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             9999999999899863888998899
Q gi|254780427|r  123 ENHLVHLIIHGFLHLLGYDHVDDKD  147 (171)
Q Consensus       123 ~~e~~~l~iHG~LHLlGydH~~~~~  147 (171)
                      ...+....+|.+-|.||.+|..+.+
T Consensus       114 ~~~~~~v~~HEiGH~LGL~H~~d~~  138 (169)
T 1rm8_A          114 GNDLFLVAVHELGHALGLEHSNDPT  138 (169)
T ss_dssp             SEEHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             5256777777776652678789998


No 31 
>>3k9t_A Putative peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.37A {Clostridium acetobutylicum} (A:69-112,A:151-165)
Probab=20.07  E-value=23  Score=16.12  Aligned_cols=10  Identities=30%  Similarity=0.454  Sum_probs=5.8

Q ss_pred             HHHHCCCCCC
Q ss_conf             9986388899
Q gi|254780427|r  134 FLHLLGYDHV  143 (171)
Q Consensus       134 ~LHLlGydH~  143 (171)
                      -||++||...
T Consensus        25 NLHvlgYS~P   34 (59)
T 3k9t_A           25 NLHVXSYSVP   34 (59)
T ss_dssp             GGGBCBTCCC
T ss_pred             CEEEEECCCC
T ss_conf             3688645665


Done!