Query gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 171
No_of_seqs 112 out of 1735
Neff 7.0
Searched_HMMs 13730
Date Wed Jun 1 04:43:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780427.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xm5a_ d.92.1.15 (A:) Hypothe 100.0 0 0 291.6 17.5 150 7-169 2-151 (152)
2 d1tvia_ d.92.1.15 (A:) Hypothe 100.0 1.1E-42 0 264.3 11.3 112 52-170 29-144 (150)
3 d1oz9a_ d.92.1.15 (A:) Hypothe 100.0 8.7E-41 7E-45 253.3 16.9 123 35-163 17-140 (141)
4 d1lmla_ d.92.1.3 (A:) Leishman 70.2 1 7.3E-05 21.8 1.9 40 96-142 136-175 (475)
5 d1xfia_ e.50.1.1 (A:) Hypothet 55.7 1.2 8.9E-05 21.3 0.2 54 111-170 64-117 (360)
6 d1asta_ d.92.1.8 (A:) Astacin 54.0 2.5 0.00018 19.4 1.5 19 127-145 87-105 (200)
7 d1hv5a_ d.92.1.11 (A:) Stromel 32.6 13 0.00098 15.3 2.5 41 102-146 93-133 (162)
8 d1mmqa_ d.92.1.11 (A:) Matrily 25.7 18 0.0013 14.5 2.2 44 100-147 92-135 (166)
9 d1rm8a_ d.92.1.11 (A:) Matrix 22.4 22 0.0016 14.1 2.3 46 100-147 93-138 (169)
10 d2a6aa2 c.55.1.9 (A:104-193) H 22.3 22 0.0016 14.1 4.4 38 60-117 33-70 (90)
No 1
>d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=291.59 Aligned_cols=150 Identities=40% Similarity=0.652 Sum_probs=126.4
Q ss_pred CCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 35430588885485211113525799999999999974322014667438999985779999999998504898515663
Q gi|254780427|r 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 (171)
Q Consensus 7 ~~~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSF 86 (171)
+..+++|++.+++..+ ++..+ .+.+|+..++... .+..+|||.|||+++|++||++|||+|+|||||||
T Consensus 2 ~~~~idi~~~~~~~~~---lP~~~----~i~~~l~~~l~~~----~~~~evsi~~v~~~~m~~LN~~yr~~d~~TDVLSF 70 (152)
T d1xm5a_ 2 SQVILDLQLACEDNSG---LPEES----QFQTWLNAVIPQF----QEESEVTIRVVDTAESHSLNLTYRGKDKPTNVLSF 70 (152)
T ss_dssp CEEEEEEEECSSSCCS---CCCHH----HHHHHHHTTSHHH----HSEEEEEEEEECHHHHHHHHHHHHCCSSCCSEEEE
T ss_pred CCEEEEEEEECCCCCC---CCCHH----HHHHHHHHHHHHC----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 8349999985378658---88999----9999999999836----89838999999989999999998545888645886
Q ss_pred CCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 25566777656530020465188887446661898999999999998998638889988999999999999999868888
Q gi|254780427|r 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 (171)
Q Consensus 87 P~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~~ 166 (171)
|+... +..+..+||||+||+++|.+||+++++++.+|++||+|||+|||+||||+++++++.|+++|+++|+++|++|
T Consensus 71 p~~~~--~~~~~~~lGdI~I~~~~i~~~A~~~~~~~~~e~~~l~iHG~LHLlGyDH~~~~~~~~M~~~E~~~L~~l~~~n 148 (152)
T d1xm5a_ 71 PFEVP--PGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYED 148 (152)
T ss_dssp ECCCC--SSCCCCEEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ECCCC--CCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 24468--8777453353677599999899883840988888999999999737888984899999999999999869999
Q ss_pred CCC
Q ss_conf 644
Q gi|254780427|r 167 PYE 169 (171)
Q Consensus 167 PY~ 169 (171)
||-
T Consensus 149 PY~ 151 (152)
T d1xm5a_ 149 PYI 151 (152)
T ss_dssp SCC
T ss_pred CCC
T ss_conf 867
No 2
>d1tvia_ d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=1.1e-42 Score=264.29 Aligned_cols=112 Identities=33% Similarity=0.550 Sum_probs=104.0
Q ss_pred CCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 67438999985779999999998504898515663255667776565300204651888874466618989999999999
Q gi|254780427|r 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 (171)
Q Consensus 52 ~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~i 131 (171)
.+.++|||.|||+++|++||++|||+|+||||||||+.+ ...+|||+||+++|.+||.++++++.+|+++++|
T Consensus 29 ~~~~~i~i~~v~d~~m~~LN~~~r~~~~~TDVLSFp~~~-------~~~lGdI~i~~~~i~~~A~~~~~~~~~el~~l~i 101 (150)
T d1tvia_ 29 IGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTFPLME-------EDVYGEIYVCPLIVEENAREFNNTFEKELLEVVI 101 (150)
T ss_dssp TSCCCCEEEECCHHHHHHHHHTTTCCCCCCSEECCCCCS-------SSCCSEEEECHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEECCCC-------CCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 587589999988899999999994899986457751521-------0013565650689888898838419889399999
Q ss_pred HHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHC---CCCCCCCC
Q ss_conf 9899863888998-899999999999999986---88886447
Q gi|254780427|r 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDL---GINDPYEV 170 (171)
Q Consensus 132 HG~LHLlGydH~~-~~~~~~M~~~E~~iL~~l---~i~~PY~~ 170 (171)
||+|||+||||++ ++++..|+.+|+++|+++ +++|||.+
T Consensus 102 HG~LHLlGyDH~~~~~~~~~M~~~E~~il~k~~~~~~~nPye~ 144 (150)
T d1tvia_ 102 HGILHLAGYDHEFEDKNSKEMFEKQKKYVEEVWGEWRSNPSED 144 (150)
T ss_dssp HHHHHHHSCSSCCTTSCCHHHHHHHHHHHHHHHHHHTTSCSCS
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999971888899868999999999999999983188997777
No 3
>d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00 E-value=8.7e-41 Score=253.30 Aligned_cols=123 Identities=38% Similarity=0.535 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHHHH
Q ss_conf 99999999743220146674389999857799999999985048985156632556677765653002046518888744
Q gi|254780427|r 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 (171)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~~e 114 (171)
.+.+++..++...+ ...++|||.|||+++|++||++||++|+||||||||+.+.. ....++|||+||+++|.+|
T Consensus 17 ~l~k~~~~~l~~~~---~~~~evsi~~v~~~~i~~LN~~yr~kd~~TDVLSFp~~~~~---~~~~~lGdI~Is~~~i~~~ 90 (141)
T d1oz9a_ 17 KIEKWAELALSALG---LNNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPMGEEF---GGYKILGDVVISQDTAERQ 90 (141)
T ss_dssp HHHHHHHHHHHHTT---CCSEEEEEEEECHHHHHHHHHHHHSCCSCCSEEEEECCCEE---TTEEEEEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHCC---CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEECCCCCC---CCCCCCCCHHCCHHHHHHH
T ss_conf 99999999999749---99748999998889999999999589998644775253334---5532045310019999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHCC
Q ss_conf 6661898999999999998998638889988-999999999999999868
Q gi|254780427|r 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLERSILEDLG 163 (171)
Q Consensus 115 A~~~~~~~~~e~~~l~iHG~LHLlGydH~~~-~~~~~M~~~E~~iL~~l~ 163 (171)
|.++++++.+|+++|+|||+|||+||||+++ +++..|+.+|+++|+++.
T Consensus 91 a~~~~~~~~~el~~l~iHGlLHLlGyDH~~~~e~~~~M~~~E~~il~~l~ 140 (141)
T d1oz9a_ 91 ARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFRELENYVLSKLS 140 (141)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99909869999999999999997188889998999999999999999836
No 4
>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]}
Probab=70.24 E-value=1 Score=21.76 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 56530020465188887446661898999999999998998638889
Q gi|254780427|r 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 (171)
Q Consensus 96 ~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH 142 (171)
...+..|=|.+++..+..+. ...+.++++|-++|.|||..
T Consensus 136 ~~RPi~G~i~~n~~~i~~~~-------~~~~~~~~~HEi~H~LGfs~ 175 (475)
T d1lmla_ 136 DGHPAVGVINIPAANIASRY-------DQLVTRVVTHEMAHALGFSG 175 (475)
T ss_dssp TSCEEEEEEECCGGGCCCSC-------CHHHHHHHHHHHHHHTTCSH
T ss_pred CCCCCCCEEECCHHHCCCCC-------HHHHHHHHHHHHHHHHCCCH
T ss_conf 77861012541675668730-------05889999999988743583
No 5
>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=55.67 E-value=1.2 Score=21.27 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=31.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 874466618989999999999989986388899889999999999999998688886447
Q gi|254780427|r 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 (171)
Q Consensus 111 i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~~PY~~ 170 (171)
+..-|..+...+..++..+-.|.. .|. .......|...-+++|..+|++|||+.
T Consensus 64 a~~Ra~~f~~~y~~~L~~l~~~p~----~~g--~~~~~~ll~~~re~~Lr~~Gf~DpY~~ 117 (360)
T d1xfia_ 64 APARAEKFAERYAGILEDLKKDPE----SHG--GPPDGILLCRLREQVLRELGFRDIFKK 117 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT----GGG--CSCCHHHHHHHHHHHHHHTTCSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC----CCC--CCCHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 899999999999999999984876----557--601788999999999997699980099
No 6
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]}
Probab=54.01 E-value=2.5 Score=19.44 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHCCCCCCCH
Q ss_conf 9999998998638889988
Q gi|254780427|r 127 VHLIIHGFLHLLGYDHVDD 145 (171)
Q Consensus 127 ~~l~iHG~LHLlGydH~~~ 145 (171)
...++|=++|.||+-|+..
T Consensus 87 ~g~i~HEl~HaLGf~HEh~ 105 (200)
T d1asta_ 87 HGTIIHELMHAIGFYHEHT 105 (200)
T ss_dssp HHHHHHHHHHHHTBCCGGG
T ss_pred CCCCHHHHHHHHCCCCHHH
T ss_conf 6832888887744630444
No 7
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.56 E-value=13 Score=15.26 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=25.6
Q ss_pred HEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 204651888874466618989999999999989986388899889
Q gi|254780427|r 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 (171)
Q Consensus 102 GDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~ 146 (171)
++|.+............+. .+..+++|-+=|.||..|..+.
T Consensus 93 ~~i~~~~~~~~~~~~~~g~----~~~~v~~HEiGHaLGL~H~~~~ 133 (162)
T d1hv5a_ 93 GDVHFDYDETWTIGDNQGT----DLLQVAAHEFGHVLGLQHTTAA 133 (162)
T ss_dssp EEEEEETTSCEESSCSSSE----EHHHHHHHHHHHHTTCCCCSCT
T ss_pred CCEEECCHHCCCCCCCCCC----CHHHHHHHHHHHHCCCCCCCCC
T ss_conf 3155020012100145674----4521014452001167888998
No 8
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.69 E-value=18 Score=14.50 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=26.3
Q ss_pred CHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 002046518888744666189899999999999899863888998899
Q gi|254780427|r 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 100 ~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
..|+|.+....... ..-....++..+++|-+=|.||..|..+.+
T Consensus 92 ~~~~i~~~~~~~~~----~~~~~~~~~~~v~~HEiGHaLGL~H~~~~~ 135 (166)
T d1mmqa_ 92 LGGDAHFDEDERWT----DGSSLGINFLYAATHELGHSLGMGHSSDPN 135 (166)
T ss_dssp TTTCEEEETTSCEE----SSSSSSEEHHHHHHHHHHHHHTBCCCSCTT
T ss_pred CCCEEEECCHHHHH----CCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 23227743212200----013445014333223304434789999998
No 9
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.39 E-value=22 Score=14.07 Aligned_cols=46 Identities=24% Similarity=0.245 Sum_probs=26.2
Q ss_pred CHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 002046518888744666189899999999999899863888998899
Q gi|254780427|r 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 (171)
Q Consensus 100 ~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~ 147 (171)
..+++.+-........... .-...+..+++|-+=|.||.+|..+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~HEiGHaLGL~H~~~~~ 138 (169)
T d1rm8a_ 93 IGGDTHFDSDEPWTLGNPN--HDGNDLFLVAVHELGHALGLEHSNDPT 138 (169)
T ss_dssp TTTCEEEETTSCEESSCCS--SSSEEHHHHHHHHHHHHHTCCCCSCTT
T ss_pred CCCEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 4642564144431000146--876335554456666550688799998
No 10
>d2a6aa2 c.55.1.9 (A:104-193) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=22.30 E-value=22 Score=14.06 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=29.3
Q ss_pred EEECHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHEEEEEHHHHHHHHHH
Q ss_conf 9857799999999985048985156632556677765653002046518888744666
Q gi|254780427|r 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 (171)
Q Consensus 60 ~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~ 117 (171)
..++|++.+++-++| +|.-||- .||+||+.+..+++..
T Consensus 33 sv~sdee~~~i~ke~----~p~~vl~----------------ddi~isp~vlveeser 70 (90)
T d2a6aa2 33 SVVSDEELEEITKEF----SPKIVLK----------------DDLLISPAVLVEESER 70 (90)
T ss_dssp EEEEHHHHHHHHHHH----CCSEEEE----------------SSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHC----CCCEEEE----------------CCEECCCHHHHHHHHH
T ss_conf 405789999999844----9764752----------------0012271777777899
Done!