BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] (171 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] gi|254040104|gb|ACT56900.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 346 bits (888), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 171/171 (100%), Positives = 171/171 (100%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV Sbjct: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK Sbjct: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD Sbjct: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 >gi|315122127|ref|YP_004062616.1| hypothetical protein CKC_01885 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495529|gb|ADR52128.1| hypothetical protein CKC_01885 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 163 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 113/166 (68%), Positives = 136/166 (81%), Gaps = 3/166 (1%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N P+L+L IAVE+ LWG++ L LCEVV AKA+S L SK F E+I E+S VFTDS+ Sbjct: 1 MNPPKLNLHIAVESELWGEDFDLSVLCEVVLAKAISFLTSKKDFSLEDI-EVSFVFTDSN 59 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 RI+ LN +YRGIDKPTNVLSFP+ +S S MLGDIVLAYE++E EANVLGK+F++H Sbjct: 60 RIKELNAQYRGIDKPTNVLSFPSVLSSE--YSGAMLGDIVLAYEVMEAEANVLGKKFKDH 117 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LVHLIIHGFLHLL YDHVDD+DA +MEGLERSIL DLGI+DPYE+D Sbjct: 118 LVHLIIHGFLHLLRYDHVDDEDARLMEGLERSILADLGIDDPYELD 163 >gi|227820630|ref|YP_002824600.1| hypothetical protein NGR_c00430 [Sinorhizobium fredii NGR234] gi|254799468|sp|C3MF10|RRMF_RHISN RecName: Full=Probable rRNA maturation factor gi|227339629|gb|ACP23847.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 173 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 101/160 (63%), Gaps = 3/160 (1%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS--KGYFVKENIVELSLVFTDSHRIE 68 LD+QI+VE W E L+ L + V+ LI+ K F ++ ELSLVFTD I Sbjct: 4 LDIQISVEEGDWPSEDELQGLSTRILDVTVAFLIAEEKQPF-PDDPPELSLVFTDDQSIR 62 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+R DKPTNVLSFP + MLGDI++AYE +E EA + K FE HL H Sbjct: 63 EINAEWRNQDKPTNVLSFPAFPVTPGNMPGPMLGDIIVAYETLEREAAEMEKPFEEHLTH 122 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L++HGFLHL GYDH++D +A MEGLE IL LG++DPY Sbjct: 123 LLVHGFLHLFGYDHIEDDEAERMEGLETRILARLGLSDPY 162 >gi|153008092|ref|YP_001369307.1| hypothetical protein Oant_0756 [Ochrobactrum anthropi ATCC 49188] gi|166228855|sp|A6WWX4|RRMF_OCHA4 RecName: Full=Probable rRNA maturation factor gi|151559980|gb|ABS13478.1| protein of unknown function UPF0054 [Ochrobactrum anthropi ATCC 49188] Length = 162 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 94/158 (59%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I VE W DE L L A +NL +K ELS+VFTD I+TLN Sbjct: 8 IDIMVEAGNWPDETALEGLVRKSVEAAWANL-----GLKSAASELSVVFTDDASIQTLNA 62 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+RG DKPTNVLSFP + MLGDI++A E +E EA GK ENHL HL++H Sbjct: 63 EWRGKDKPTNVLSFPAFPVKAGAQPGPMLGDIIIARETVEREAREEGKPLENHLAHLVVH 122 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GFLHLLGYDH D +A VMEG ER IL L I DPY V Sbjct: 123 GFLHLLGYDHETDAEAEVMEGREREILHALAIPDPYAV 160 >gi|150395270|ref|YP_001325737.1| hypothetical protein Smed_0042 [Sinorhizobium medicae WSM419] gi|166227780|sp|A6U5H2|RRMF_SINMW RecName: Full=Probable rRNA maturation factor gi|150026785|gb|ABR58902.1| protein of unknown function UPF0054 [Sinorhizobium medicae WSM419] Length = 168 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/159 (49%), Positives = 99/159 (62%), Gaps = 1/159 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIET 69 LD+QI+VE W E L++ EVV A L + + ELSLVFTD I+ Sbjct: 4 LDIQISVEAGDWPPEDELQSFSEVVLEAAADFLAREERQPLSAEAAELSLVFTDDQSIKA 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+RG DKPTNVLSFP + LMLGDIV+A+E + EA L K F+ HL HL Sbjct: 64 INAEWRGQDKPTNVLSFPAFPVTPGKMPGLMLGDIVVAHETLRREAAELEKPFDAHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HGFLHL GYDH++D +A ME LE IL LG++DPY Sbjct: 124 LVHGFLHLFGYDHIEDDEAERMERLETRILARLGLSDPY 162 >gi|86356031|ref|YP_467923.1| hypothetical protein RHE_CH00374 [Rhizobium etli CFN 42] gi|123513247|sp|Q2KD90|RRMF_RHIEC RecName: Full=Probable rRNA maturation factor gi|86280133|gb|ABC89196.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 171 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/161 (49%), Positives = 101/161 (62%), Gaps = 3/161 (1%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIE 68 LD+QI++E+ W E L CE V A L K F K E+SLVFTD I+ Sbjct: 4 LDIQISIEDIGWPGEETLLVFCERVLGAAAIYLRDNEKQPFPK-MPPEVSLVFTDDASIQ 62 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+RG DKPTNVLSFP MLGDI++A E +E EA L K F++HL H Sbjct: 63 DINAEWRGKDKPTNVLSFPAFPVQRGKVPGPMLGDIIIARETVEREAQELEKSFDDHLTH 122 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L++HGFLHLLGYDH+++ +A MEGLE IL LG++DPYE Sbjct: 123 LLVHGFLHLLGYDHMNNAEAETMEGLETRILAQLGLSDPYE 163 >gi|15964160|ref|NP_384513.1| hypothetical protein SMc01113 [Sinorhizobium meliloti 1021] gi|307301305|ref|ZP_07581067.1| protein of unknown function UPF0054 [Sinorhizobium meliloti BL225C] gi|307317976|ref|ZP_07597413.1| protein of unknown function UPF0054 [Sinorhizobium meliloti AK83] gi|26006908|sp|Q92SI5|RRMF_RHIME RecName: Full=Probable rRNA maturation factor gi|15073336|emb|CAC41844.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306896378|gb|EFN27127.1| protein of unknown function UPF0054 [Sinorhizobium meliloti AK83] gi|306903761|gb|EFN34348.1| protein of unknown function UPF0054 [Sinorhizobium meliloti BL225C] Length = 168 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/159 (48%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIET 69 LD+QI+VE W E L++ CE V A L + + ELSLVFTD I Sbjct: 4 LDIQISVEAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAELSLVFTDDQSIRA 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+RG DK TNVLSFP + MLGDIV+A+E + EA L K F+ HL HL Sbjct: 64 INAEWRGQDKATNVLSFPAFPVTPGRMPGPMLGDIVVAHETLRREAAELEKPFDAHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HGFLHL GYDH++D +A MEGLE IL LG++DPY Sbjct: 124 LVHGFLHLFGYDHIEDDEAERMEGLETRILARLGLSDPY 162 >gi|189025205|ref|YP_001935973.1| Diacyglycerol kinase [Brucella abortus S19] gi|237816495|ref|ZP_04595488.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|189020777|gb|ACD73499.1| Diacyglycerol kinase [Brucella abortus S19] gi|237788562|gb|EEP62777.1| conserved hypothetical protein [Brucella abortus str. 2308 A] Length = 190 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 80/158 (50%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E W DE L +L A A +NL +K ELS+VFTD I+ LN Sbjct: 30 IDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLLNG 84 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL++H Sbjct: 85 EWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVH 144 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 145 GFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 182 >gi|306843573|ref|ZP_07476174.1| conserved hypothetical protein [Brucella sp. BO1] gi|306276264|gb|EFM57964.1| conserved hypothetical protein [Brucella sp. BO1] Length = 195 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 80/158 (50%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E W DE L +L A A +NL +K ELS+VFTD I+ LN Sbjct: 35 IDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLLNG 89 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL++H Sbjct: 90 EWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVH 149 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 150 GFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 187 >gi|241202783|ref|YP_002973879.1| hypothetical protein Rleg_0029 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856673|gb|ACS54340.1| protein of unknown function UPF0054 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 171 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 79/161 (49%), Positives = 101/161 (62%), Gaps = 1/161 (0%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIE 68 LD+QI+VE+ W E L + CE V AV L S+ E+SLVFTD I+ Sbjct: 3 ELDIQISVEDIGWPGEETLLSFCERVLGAAVVYLSDSEKQPFPTLPPEVSLVFTDDASIQ 62 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+RG DK TNVLSFP MLGDI++A E +E EA L K F++HL H Sbjct: 63 DINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETLEREAAELEKSFDDHLTH 122 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 123 LLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|239833204|ref|ZP_04681533.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] gi|239825471|gb|EEQ97039.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] Length = 162 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E W +E L L A SNL +K ELS+VFTD I+TLN Sbjct: 8 IDIMIEAGNWQEENALEGLVRKSVEAAWSNL-----GLKSAASELSVVFTDDASIQTLNA 62 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+RG DKPTNVLSFP + MLGDI++A E +E EA GK ENHLVHL++H Sbjct: 63 EWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIIIARETVEREALEEGKPLENHLVHLVVH 122 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GFLHLLGYDH D +A VMEG ER IL L I DPY V Sbjct: 123 GFLHLLGYDHETDAEAEVMEGREREILHALAIPDPYAV 160 >gi|17988257|ref|NP_540891.1| diacyglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|161620064|ref|YP_001593951.1| hypothetical protein BCAN_A2198 [Brucella canis ATCC 23365] gi|163844169|ref|YP_001628574.1| hypothetical protein BSUIS_A1993 [Brucella suis ATCC 23445] gi|225626522|ref|ZP_03784561.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|225853581|ref|YP_002733814.1| hypothetical protein BMEA_A2215 [Brucella melitensis ATCC 23457] gi|254690287|ref|ZP_05153541.1| Diacyglycerol kinase [Brucella abortus bv. 6 str. 870] gi|254694775|ref|ZP_05156603.1| Diacyglycerol kinase [Brucella abortus bv. 3 str. Tulya] gi|254696403|ref|ZP_05158231.1| Diacyglycerol kinase [Brucella abortus bv. 2 str. 86/8/59] gi|254700785|ref|ZP_05162613.1| Diacyglycerol kinase [Brucella suis bv. 5 str. 513] gi|254705154|ref|ZP_05166982.1| Diacyglycerol kinase [Brucella suis bv. 3 str. 686] gi|254707329|ref|ZP_05169157.1| Diacyglycerol kinase [Brucella pinnipedialis M163/99/10] gi|254709130|ref|ZP_05170941.1| Diacyglycerol kinase [Brucella pinnipedialis B2/94] gi|254713445|ref|ZP_05175256.1| Diacyglycerol kinase [Brucella ceti M644/93/1] gi|254716199|ref|ZP_05178010.1| Diacyglycerol kinase [Brucella ceti M13/05/1] gi|254731316|ref|ZP_05189894.1| Diacyglycerol kinase [Brucella abortus bv. 4 str. 292] gi|256030655|ref|ZP_05444269.1| Diacyglycerol kinase [Brucella pinnipedialis M292/94/1] gi|256045759|ref|ZP_05448637.1| Diacyglycerol kinase [Brucella melitensis bv. 1 str. Rev.1] gi|256060116|ref|ZP_05450298.1| Diacyglycerol kinase [Brucella neotomae 5K33] gi|256112478|ref|ZP_05453399.1| Diacyglycerol kinase [Brucella melitensis bv. 3 str. Ether] gi|256158657|ref|ZP_05456540.1| Diacyglycerol kinase [Brucella ceti M490/95/1] gi|256254061|ref|ZP_05459597.1| Diacyglycerol kinase [Brucella ceti B1/94] gi|256258540|ref|ZP_05464076.1| Diacyglycerol kinase [Brucella abortus bv. 9 str. C68] gi|260169559|ref|ZP_05756370.1| Diacyglycerol kinase [Brucella sp. F5/99] gi|260755827|ref|ZP_05868175.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260759050|ref|ZP_05871398.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260760775|ref|ZP_05873118.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884852|ref|ZP_05896466.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261215102|ref|ZP_05929383.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261217973|ref|ZP_05932254.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221202|ref|ZP_05935483.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314811|ref|ZP_05954008.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261316630|ref|ZP_05955827.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321177|ref|ZP_05960374.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261324093|ref|ZP_05963290.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261751294|ref|ZP_05995003.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755859|ref|ZP_05999568.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987702|ref|ZP_06100259.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265992176|ref|ZP_06104733.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993914|ref|ZP_06106471.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265997163|ref|ZP_06109720.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294851380|ref|ZP_06792053.1| metalloprotease [Brucella sp. NVSL 07-0026] gi|54040443|sp|P67133|RRMF_BRUSU RecName: Full=Probable rRNA maturation factor gi|54042632|sp|P67132|RRMF_BRUME RecName: Full=Probable rRNA maturation factor gi|145572768|sp|Q57AA9|RRMF_BRUAB RecName: Full=Probable rRNA maturation factor gi|145572769|sp|Q2YQS6|RRMF_BRUA2 RecName: Full=Probable rRNA maturation factor gi|189039424|sp|B0CK02|RRMF_BRUSI RecName: Full=Probable rRNA maturation factor gi|189039776|sp|A9M9Y5|RRMF_BRUC2 RecName: Full=Probable rRNA maturation factor gi|254801689|sp|C0RG38|RRMF_BRUMB RecName: Full=Probable rRNA maturation factor gi|17984025|gb|AAL53155.1| diacyglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|161336875|gb|ABX63180.1| conserved hypothetical protein [Brucella canis ATCC 23365] gi|163674892|gb|ABY39003.1| conserved hypothetical protein [Brucella suis ATCC 23445] gi|225618179|gb|EEH15222.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|225641946|gb|ACO01860.1| conserved hypothetical protein [Brucella melitensis ATCC 23457] gi|260669368|gb|EEX56308.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260671207|gb|EEX58028.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675935|gb|EEX62756.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260874380|gb|EEX81449.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916709|gb|EEX83570.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260919786|gb|EEX86439.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260923062|gb|EEX89630.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261293867|gb|EEX97363.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261295853|gb|EEX99349.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261300073|gb|EEY03570.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303837|gb|EEY07334.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261741047|gb|EEY28973.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745612|gb|EEY33538.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262551631|gb|EEZ07621.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|262764895|gb|EEZ10816.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263003242|gb|EEZ15535.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|264659899|gb|EEZ30160.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294819969|gb|EFG36968.1| metalloprotease [Brucella sp. NVSL 07-0026] gi|326410154|gb|ADZ67219.1| diacylglycerol kinase [Brucella melitensis M28] gi|326539872|gb|ADZ88087.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 168 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 80/158 (50%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E W DE L +L A A +NL +K ELS+VFTD I+ LN Sbjct: 8 IDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLLNG 62 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL++H Sbjct: 63 EWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVH 122 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 123 GFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 160 >gi|62290993|ref|YP_222786.1| hypothetical protein BruAb1_2129 [Brucella abortus bv. 1 str. 9-941] gi|260546256|ref|ZP_05821996.1| diacylglycerol kinase [Brucella abortus NCTC 8038] gi|260563055|ref|ZP_05833541.1| diacylglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|260567377|ref|ZP_05837847.1| diacylglycerol kinase [Brucella suis bv. 4 str. 40] gi|261759087|ref|ZP_06002796.1| diacylglycerol kinase [Brucella sp. F5/99] gi|265999239|ref|ZP_05465467.2| diacylglycerol kinase [Brucella melitensis bv. 2 str. 63/9] gi|297247379|ref|ZP_06931097.1| diacylglycerol kinase [Brucella abortus bv. 5 str. B3196] gi|62197125|gb|AAX75425.1| conserved hypothetical protein TIGR00043 [Brucella abortus bv. 1 str. 9-941] gi|260096363|gb|EEW80239.1| diacylglycerol kinase [Brucella abortus NCTC 8038] gi|260153071|gb|EEW88163.1| diacylglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|260156895|gb|EEW91975.1| diacylglycerol kinase [Brucella suis bv. 4 str. 40] gi|261739071|gb|EEY27067.1| diacylglycerol kinase [Brucella sp. F5/99] gi|263092809|gb|EEZ16984.1| diacylglycerol kinase [Brucella melitensis bv. 2 str. 63/9] gi|297174548|gb|EFH33895.1| diacylglycerol kinase [Brucella abortus bv. 5 str. B3196] Length = 171 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/158 (50%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E W DE L +L A A +NL +K ELS+VFTD I+ LN Sbjct: 11 IDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLLNG 65 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL++H Sbjct: 66 EWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVH 125 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 126 GFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 163 >gi|306842736|ref|ZP_07475378.1| conserved hypothetical protein [Brucella sp. BO2] gi|306287080|gb|EFM58585.1| conserved hypothetical protein [Brucella sp. BO2] Length = 158 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/154 (51%), Positives = 93/154 (60%), Gaps = 5/154 (3%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E W DE L +L A A +NL +K ELS+VFTD I+ LN E+RG Sbjct: 2 IEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQVLNGEWRG 56 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL++HGFLH Sbjct: 57 KDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLH 116 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LLGYDH D++A VME ER IL L I DPY V Sbjct: 117 LLGYDHETDEEAEVMEAREREILHALAIPDPYAV 150 >gi|190890044|ref|YP_001976586.1| hypothetical protein RHECIAT_CH0000414 [Rhizobium etli CIAT 652] gi|238692546|sp|B3PZB4|RRMF_RHIE6 RecName: Full=Probable rRNA maturation factor gi|190695323|gb|ACE89408.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 171 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 102/160 (63%), Gaps = 1/160 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLC-EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LD+QI++EN W +E L C V+ A AV S+ E+SLVFTD I+ Sbjct: 4 LDIQISIENIGWPEEETLLAFCGRVLGAAAVYLRDSEKQPFPTMPPEVSLVFTDDASIQD 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+RG DK TNVLSFP MLGDI++A E +E EA+ L K F++HL HL Sbjct: 64 INAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETVEREAHELEKSFDDHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 124 LVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|116250162|ref|YP_766000.1| hypothetical protein RL0393 [Rhizobium leguminosarum bv. viciae 3841] gi|145558823|sp|Q1MMB8|RRMF_RHIL3 RecName: Full=Probable rRNA maturation factor gi|115254810|emb|CAK05884.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 171 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 100/160 (62%), Gaps = 1/160 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIET 69 LD+QI+VE+ W E L + CE V A L S+ E+SLVFTD I+ Sbjct: 4 LDIQISVEDIGWPGEETLLSFCERVLGAAAVYLRDSEKQPFPTMAPEVSLVFTDDASIQD 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+RG DK TNVLSFP MLGDI++A E +E EA L K F++HL HL Sbjct: 64 INAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETLEREAAELEKSFDDHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 124 LVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|23503004|ref|NP_699131.1| hypothetical protein BR2156 [Brucella suis 1330] gi|82700902|ref|YP_415476.1| hypothetical protein BAB1_2156 [Brucella melitensis biovar Abortus 2308] gi|148560239|ref|YP_001259950.1| hypothetical protein BOV_2068 [Brucella ovis ATCC 25840] gi|256370551|ref|YP_003108062.1| metal-dependent hydrolase [Brucella microti CCM 4915] gi|23349044|gb|AAN31046.1| conserved hypothetical protein TIGR00043 [Brucella suis 1330] gi|82617003|emb|CAJ12112.1| Protein of unknown function UPF0054 [Brucella melitensis biovar Abortus 2308] gi|148371496|gb|ABQ61475.1| conserved hypothetical protein TIGR00043 [Brucella ovis ATCC 25840] gi|256000714|gb|ACU49113.1| metal-dependent hydrolase [Brucella microti CCM 4915] Length = 158 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/154 (51%), Positives = 93/154 (60%), Gaps = 5/154 (3%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E W DE L +L A A +NL +K ELS+VFTD I+ LN E+RG Sbjct: 2 IEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLLNGEWRG 56 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL++HGFLH Sbjct: 57 KDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLH 116 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LLGYDH D++A VME ER IL L I DPY V Sbjct: 117 LLGYDHETDEEAEVMEAREREILHALAIPDPYAV 150 >gi|306837707|ref|ZP_07470576.1| conserved hypothetical protein [Brucella sp. NF 2653] gi|306407265|gb|EFM63475.1| conserved hypothetical protein [Brucella sp. NF 2653] Length = 195 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/158 (50%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E W DE L +L A A +NL +K ELS+VFTD I+ LN Sbjct: 35 IDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLLNG 89 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+RG DKPTNVLSFP + +LGDIV+A E +E EA GK ENHL HL++H Sbjct: 90 EWRGKDKPTNVLSFPAFPVKAGSQPGPLLGDIVIARETVEREAKEEGKPIENHLSHLVVH 149 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 150 GFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 187 >gi|327188595|gb|EGE55805.1| hypothetical protein RHECNPAF_850041 [Rhizobium etli CNPAF512] Length = 171 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 78/161 (48%), Positives = 102/161 (63%), Gaps = 1/161 (0%) Query: 10 RLDLQIAVENALWGDEIHLRTLC-EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LD+QI++EN W +E L C V+ A AV S+ E+SLVFTD I+ Sbjct: 3 ELDIQISIENIGWPEEETLLAFCGHVLGAAAVYLRDSEKQPFPTLPPEVSLVFTDDASIQ 62 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+RG DK TNVLSFP MLGDI++A E +E EA+ L K F++HL H Sbjct: 63 DINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETVEREAHELEKSFDDHLTH 122 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 123 LLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|254718193|ref|ZP_05180004.1| Diacyglycerol kinase [Brucella sp. 83/13] gi|265983151|ref|ZP_06095886.1| conserved hypothetical protein [Brucella sp. 83/13] gi|264661743|gb|EEZ32004.1| conserved hypothetical protein [Brucella sp. 83/13] Length = 168 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 79/158 (50%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E W DE L +L A A +NL +K ELS+VFTD I+ LN Sbjct: 8 IDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLLNG 62 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+RG DKPTNVLSFP + +LGDIV+A E +E EA GK ENHL HL++H Sbjct: 63 EWRGKDKPTNVLSFPAFPVKAGSQPGPLLGDIVIARETVEREAKEEGKPIENHLSHLVVH 122 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 123 GFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 160 >gi|222147353|ref|YP_002548310.1| hypothetical protein Avi_0440 [Agrobacterium vitis S4] gi|254803905|sp|B9JZJ4|RRMF_AGRVS RecName: Full=Probable rRNA maturation factor gi|221734343|gb|ACM35306.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 167 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 95/159 (59%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +LD+QIA+E W DE L L + A + ++G E+SLVFT I+ Sbjct: 3 KLDVQIAIEADGWPDEAELEALSTRILDHAADFIAAEGQPFAPMPAEVSLVFTGDTEIQA 62 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+RG DKPTNVLSFP MLGDIV+A + +E EA L K +HL HL Sbjct: 63 INSEWRGQDKPTNVLSFPAYPIEPGDKPGPMLGDIVIARQTVEREAAELEKTITDHLTHL 122 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HGFLHL GYDH+ + +A MEGLE IL LG++DPY Sbjct: 123 MVHGFLHLFGYDHMTEDEAEEMEGLETRILAGLGLSDPY 161 >gi|209547629|ref|YP_002279546.1| hypothetical protein Rleg2_0017 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226701630|sp|B5ZMX9|RRMF_RHILW RecName: Full=Probable rRNA maturation factor gi|209533385|gb|ACI53320.1| protein of unknown function UPF0054 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 171 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 100/160 (62%), Gaps = 1/160 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIET 69 LD+QI+V++ W E L + CE V AV L S+ E+SLVFTD I+ Sbjct: 4 LDIQISVDDIGWPGEETLLSFCERVLGAAVIYLRDSEKQPFPTMPPEVSLVFTDDASIQD 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+RG DK TNVLSFP MLGDI++A E +E E L K F++HL HL Sbjct: 64 INAEWRGKDKATNVLSFPAFPVRPGKMPGPMLGDIIIARETVERETIELEKSFDDHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 124 LVHGFLHLLGYDHMNSDEAEIMEGLETRILAQLGLSDPYE 163 >gi|299133382|ref|ZP_07026577.1| protein of unknown function UPF0054 [Afipia sp. 1NLS2] gi|298593519|gb|EFI53719.1| protein of unknown function UPF0054 [Afipia sp. 1NLS2] Length = 164 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 72/137 (52%), Positives = 85/137 (62%), Gaps = 1/137 (0%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E V +A++ S E+ E++++ TD RI LN E+R DK TNVLSFP A Sbjct: 22 AEAVIQRAIAAAASFVELPAED-TEVAVMLTDDARIRELNKEWRDQDKATNVLSFPAAQP 80 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 LMLGDI +AYE EA GK F+NHL HL IHGFLHLLGYDH+DD +A M Sbjct: 81 PGATPQPLMLGDIAIAYETTRFEAETEGKPFQNHLSHLAIHGFLHLLGYDHLDDDEAEEM 140 Query: 152 EGLERSILEDLGINDPY 168 EGLER IL LGI DPY Sbjct: 141 EGLERDILAKLGIADPY 157 >gi|222084695|ref|YP_002543224.1| hypothetical protein Arad_0658 [Agrobacterium radiobacter K84] gi|221722143|gb|ACM25299.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 169 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/160 (48%), Positives = 99/160 (61%), Gaps = 3/160 (1%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS--KGYFVKENIVELSLVFTDSHRIE 68 LD+QI+VE W E L+ L E V A + L K F K +E+SLVFTD I Sbjct: 5 LDIQISVEEGDWPSEDVLQALAERVLGVAAAYLKKNEKQPFPK-TALEVSLVFTDDAAIR 63 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+R DK TNVLSFP G MLGDI++A E +E EA L K F++HL H Sbjct: 64 EINAEWREQDKATNVLSFPAFPLVPGGKPGPMLGDIIIARETVEREAVELEKSFDDHLTH 123 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L++HGFLHL GYDH+++ +A MEGLE IL LG++DPY Sbjct: 124 LMVHGFLHLFGYDHMNNSEAERMEGLETRILAGLGLSDPY 163 >gi|260461991|ref|ZP_05810236.1| protein of unknown function UPF0054 [Mesorhizobium opportunistum WSM2075] gi|259032238|gb|EEW33504.1| protein of unknown function UPF0054 [Mesorhizobium opportunistum WSM2075] Length = 166 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/162 (45%), Positives = 95/162 (58%), Gaps = 7/162 (4%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 +LP +++ I++E W E L L + A A + + G ELS+VF+D Sbjct: 11 SLP-VEIDISIEAGDWPAEASLARLVDRAVAVAFAETGAAGQ------SELSIVFSDDAH 63 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I TLN ++RG DKPTNVLSFP DG MLGDIVLA E + EA + K ENH+ Sbjct: 64 IRTLNADWRGKDKPTNVLSFPAFPHVKDGPLPPMLGDIVLAAETVAREAALEDKPLENHI 123 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL+IHG LHL+GYDH D +A ME +ER+ L L I DPY Sbjct: 124 THLVIHGLLHLMGYDHETDTEAEAMEAVERAALARLAIPDPY 165 >gi|209883672|ref|YP_002287529.1| putative metalloprotease [Oligotropha carboxidovorans OM5] gi|209871868|gb|ACI91664.1| putative metalloprotease [Oligotropha carboxidovorans OM5] Length = 167 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 75/164 (45%), Positives = 94/164 (57%), Gaps = 12/164 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P D+ IA + W E ++ + A A + + + EL+++ TD I Sbjct: 5 PTADVLIAAD--CWKAEAEAESIVQNAIATAATFVT-----LPAEATELAVMLTDDASIR 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN E+RG DKPTNVLSFP A + DG LMLGDI +AYE EA K F + Sbjct: 58 DLNREWRGQDKPTNVLSFPAAPLPGNTTQDGVP-LMLGDIAIAYETTRREAETDAKPFPH 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL HL +HGFLHLLGYDH++D +A VME LER IL LGI DPY Sbjct: 117 HLSHLAVHGFLHLLGYDHIEDSEAEVMEELERRILAKLGIADPY 160 >gi|121601777|ref|YP_989494.1| hypothetical protein BARBAKC583_1245 [Bartonella bacilliformis KC583] gi|145572753|sp|A1UU41|RRMF_BARBK RecName: Full=Probable rRNA maturation factor gi|120613954|gb|ABM44555.1| conserved hypothetical protein TIGR00043 [Bartonella bacilliformis KC583] Length = 158 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 94/158 (59%), Gaps = 5/158 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + +ENA WGDE L T+ E + L + + ELSL+FT++ R+ + Sbjct: 2 ISINMTIENAEWGDEKILYTITEKALIATIDRL-----SLTQVTSELSLLFTNNMRMAQI 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R +KPTNVLSFP + MLGDIVLA E I EA GK F +HL H+I Sbjct: 57 NTQWRNKNKPTNVLSFPAFPLKAGQNPGPMLGDIVLARETIVYEAEEEGKSFHDHLTHMI 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH D +A ME LE+ IL+ + I +PY Sbjct: 117 VHGILHLLGYDHETDDEAYQMEELEKEILQKIAIKNPY 154 >gi|218508193|ref|ZP_03506071.1| hypothetical protein RetlB5_11662 [Rhizobium etli Brasil 5] Length = 156 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 63/114 (55%), Positives = 81/114 (71%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+SLVFTD I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA Sbjct: 35 EVSLVFTDDASIQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETVEREA 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + L K F++HL HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 95 HELEKSFDDHLTHLLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 148 >gi|49473879|ref|YP_031921.1| hypothetical protein BQ02120 [Bartonella quintana str. Toulouse] gi|59799034|sp|Q6G0N3|RRMF_BARQU RecName: Full=Probable rRNA maturation factor gi|49239382|emb|CAF25715.1| hypothetical protein BQ02120 [Bartonella quintana str. Toulouse] Length = 158 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 7/159 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV-ELSLVFTDSHRIET 69 + + I VE+A W +E L + E +++L EN+V E+SL+FTD + Sbjct: 2 ITIDITVESARWNNEKMLYDITEKALKTTMNHL------SLENVVSEISLLFTDDKHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +K TNVLSFP + LMLGDI++A E + +EA GK F++HL H+ Sbjct: 56 INAQWRNKNKSTNVLSFPALPLKAGDPPGLMLGDIIIAQETVVLEAKKEGKSFQDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGY+H + +AC ME LER IL L INDPY Sbjct: 116 IVHGILHLLGYNHETNDEACQMEELEREILLKLSINDPY 154 >gi|163867520|ref|YP_001608719.1| hypothetical protein Btr_0248 [Bartonella tribocorum CIP 105476] gi|189039700|sp|A9IMW1|RRMF_BART1 RecName: Full=Probable rRNA maturation factor gi|161017166|emb|CAK00724.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 163 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 7/157 (4%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV-ELSLVFTDSHRIETLN 71 + I V++A W DE L + E A+ + EN+V E+SL+FTD + +N Sbjct: 4 IDIMVKDAGWNDEKMLYNITEKALTTAMH------HVSLENVVSEISLLFTDDEHMAKIN 57 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 ++RG +K TNVLSFP + MLGDI++A E + +EA GK F++HL H+I+ Sbjct: 58 AQWRGKNKSTNVLSFPAFPIKAGNPPGPMLGDIIIARETVVLEAEKQGKTFQDHLTHMIV 117 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG LHLLGYDH D +A ME LER IL+ L I DPY Sbjct: 118 HGILHLLGYDHETDDEAHQMEKLEREILQKLSIKDPY 154 >gi|304393796|ref|ZP_07375721.1| putative metalloprotease [Ahrensia sp. R2A130] gi|303293995|gb|EFL88370.1| putative metalloprotease [Ahrensia sp. R2A130] Length = 172 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/154 (44%), Positives = 92/154 (59%), Gaps = 6/154 (3%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + +E WGDE L TL E A A +++ + E+ E S +FT+ + LN ++ Sbjct: 6 LTIEGGEWGDEAALATLIERTLATAAPHIVDG---LPED-AETSFLFTNDEAVRVLNRDW 61 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 RG DKPTNVLSF A G + +LGDI +A E + EA K F+NHL H+I+HG Sbjct: 62 RGQDKPTNVLSF--AANEGGGPVTPLLGDIAIAQETVAREAEEQAKSFDNHLTHMIVHGL 119 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHL+G+DH +D +A ME LER IL DL + DPY Sbjct: 120 LHLIGHDHENDTEADEMEALERRILADLSMADPY 153 >gi|218658441|ref|ZP_03514371.1| hypothetical protein RetlI_01597 [Rhizobium etli IE4771] Length = 127 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/114 (54%), Positives = 80/114 (70%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+SLVFTD I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA Sbjct: 6 EVSLVFTDDASIQDINAEWRGKDKATNVLSFPAFPVKPGKMPGPMLGDIIIARETVEREA 65 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + L K ++HL HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 66 HELEKSLDDHLTHLLVHGFLHLLGYDHMNSTEAEIMEGLETRILAQLGLSDPYE 119 >gi|319405108|emb|CBI78712.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 158 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 68/154 (44%), Positives = 91/154 (59%), Gaps = 5/154 (3%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +E+A W DE L + + + +L + E ELSL+FTD R+ +N ++ Sbjct: 6 ITIESAKWNDEEMLYNITDKALVTTLQHL-----SLNEITSELSLLFTDDTRMAQINAQW 60 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R +KPTNVLSFP + LMLGDIV+A E + EA K F++HL H+IIHG Sbjct: 61 RHHNKPTNVLSFPAFPLKAGQNPRLMLGDIVIAQETVMREAEEERKSFQDHLTHIIIHGI 120 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLLGYDH + +A ME LE+ IL+ L I DPY Sbjct: 121 LHLLGYDHETNNEANQMEKLEKEILQKLSIKDPY 154 >gi|91974722|ref|YP_567381.1| hypothetical protein RPD_0240 [Rhodopseudomonas palustris BisB5] gi|123735849|sp|Q13EK9|RRMF_RHOPS RecName: Full=Probable rRNA maturation factor gi|91681178|gb|ABE37480.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris BisB5] Length = 195 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 63/120 (52%), Positives = 76/120 (63%), Gaps = 6/120 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-SDGC-----SSLMLGDIVLAY 108 EL+++ TD + LN YRGIDKPTNVLSFP D C + MLGDI +AY Sbjct: 69 AELAVMLTDDDGVRALNASYRGIDKPTNVLSFPAPQPDYQDACQDSGGAPQMLGDIAIAY 128 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + + EA+ GK F +HL HL +HGFLHL+GYDH D +A ME ERSIL LGI DPY Sbjct: 129 QTVRREADDEGKPFAHHLSHLAVHGFLHLVGYDHETDAEAETMESTERSILAGLGIPDPY 188 >gi|90421994|ref|YP_530364.1| hypothetical protein RPC_0470 [Rhodopseudomonas palustris BisB18] gi|122477512|sp|Q21C41|RRMF_RHOPB RecName: Full=Probable rRNA maturation factor gi|90104008|gb|ABD86045.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris BisB18] Length = 168 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 61/115 (53%), Positives = 77/115 (66%), Gaps = 2/115 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEI 113 EL+++ TD ++TLN +RGIDKPTNVLSFP D + MLGDI +AY+ Sbjct: 47 ELAVMLTDDAGVQTLNANWRGIDKPTNVLSFPALQPEGDAPDDAPKMLGDIAIAYQTTRR 106 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ GK F++HL HL +HGFLHL+GYDH D +A ME LER IL LG+ DPY Sbjct: 107 EADDEGKPFDHHLSHLAVHGFLHLVGYDHEKDAEAEAMESLEREILAQLGVPDPY 161 >gi|85714183|ref|ZP_01045172.1| hypothetical protein NB311A_08503 [Nitrobacter sp. Nb-311A] gi|85699309|gb|EAQ37177.1| hypothetical protein NB311A_08503 [Nitrobacter sp. Nb-311A] Length = 190 Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 66/117 (56%), Positives = 75/117 (64%), Gaps = 3/117 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEII 111 EL+++ TD I TLN +RGIDKPTNVLSFP S G MLGDI +AYE + Sbjct: 67 AELAIMLTDDAGIHTLNANWRGIDKPTNVLSFPALQPTGPSLPGDPPRMLGDIAIAYETL 126 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ K F +HL HL IHGFLHL+GYDH D DA ME LER IL LGI DPY Sbjct: 127 RREADNEHKPFSHHLSHLAIHGFLHLIGYDHETDADAVEMENLERKILAQLGIPDPY 183 >gi|254503442|ref|ZP_05115593.1| conserved hypothetical protein TIGR00043, putative [Labrenzia alexandrii DFL-11] gi|222439513|gb|EEE46192.1| conserved hypothetical protein TIGR00043, putative [Labrenzia alexandrii DFL-11] Length = 173 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 90/156 (57%), Gaps = 5/156 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + IAVE W DE L L + A A L V E E+SL+FT+ I+ LN Sbjct: 13 IDIAVEAGDWPDETALIKLAQTAIAAA---LKGADLEVLEK-AEVSLLFTNDEGIQKLNH 68 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R DKPTNVLSFP D +LGDIV AYE + EA LG EF NHL HL +H Sbjct: 69 QWRDKDKPTNVLSFP-GNDPQDDVYGPLLGDIVFAYETVAKEAEELGIEFNNHLTHLTVH 127 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHL YDH + +A +ME LE +IL LGI+DPY Sbjct: 128 GLLHLFDYDHQEKDEAELMESLETAILAGLGIDDPY 163 >gi|319898346|ref|YP_004158439.1| hypothetical protein BARCL_0168 [Bartonella clarridgeiae 73] gi|319402310|emb|CBI75849.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 158 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/154 (43%), Positives = 91/154 (59%), Gaps = 5/154 (3%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + +E+A WGDE L + E + +L + E ELSL+FTD + +N ++ Sbjct: 6 MTIESAKWGDEKMLYNITEKALTTTLQHL-----SLNEVRSELSLLFTDDKHMAQINAQW 60 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R +K TNVLSFP+ + LMLGDI++A E I EA K F++HL H+IIHG Sbjct: 61 RHQNKSTNVLSFPSFPLKAGQNPGLMLGDIIIAQETIMREAEEEKKSFQDHLTHIIIHGI 120 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLLGY+H + +A ME LER IL+ L I DPY Sbjct: 121 LHLLGYNHETNDEANQMEKLEREILQKLSIKDPY 154 >gi|159184274|ref|NP_353390.2| hypothetical protein Atu0358 [Agrobacterium tumefaciens str. C58] gi|26006905|sp|Q8UID9|RRMF_AGRT5 RecName: Full=Probable rRNA maturation factor gi|159139601|gb|AAK86175.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 168 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/160 (50%), Positives = 97/160 (60%), Gaps = 3/160 (1%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIE 68 LD+QI+VE W E +L V AV L + F K VELSLVFTD I Sbjct: 4 LDIQISVEAEGWSSEENLAAFATKVLNAAVDFLKREEEQPFPK-MPVELSLVFTDDENIR 62 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+R DK TNVLSFP G MLGDIV+A E +E EA L K FE+HL H Sbjct: 63 EINAEWRDKDKATNVLSFPAFPLEPGGMPGPMLGDIVIARETVEREALELDKSFEDHLTH 122 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L++HGFLHL GYDH+D+++A ME LE IL LG++DPY Sbjct: 123 LLVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSDPY 162 >gi|163757741|ref|ZP_02164830.1| hypothetical protein HPDFL43_20062 [Hoeflea phototrophica DFL-43] gi|162285243|gb|EDQ35525.1| hypothetical protein HPDFL43_20062 [Hoeflea phototrophica DFL-43] Length = 171 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/161 (41%), Positives = 91/161 (56%), Gaps = 1/161 (0%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRI 67 P L +A+E WGDE + L + A ++L ++ E+SLV D + Sbjct: 5 PLFSLALALEAGEWGDEARIEALAQTALEAAAADLTRNEAQPFPSEPPEVSLVLADDAMM 64 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N E+R KPTNVLSFP + MLGDI+LA E IE EA LGK + H+ Sbjct: 65 TGINSEWRAQAKPTNVLSFPAFPLTPGAMPGPMLGDIILARETIEREAGDLGKPVDEHIT 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HGFLHL GYDH+ ++DA ME +E IL L ++DPY Sbjct: 125 HLVVHGFLHLFGYDHIQNEDAEKMEAIETRILTSLNLSDPY 165 >gi|319403638|emb|CBI77223.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 158 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 5/158 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E+A W +E L + E + +L + E ELSL+FTD + + Sbjct: 2 ISIDITIESAKWNNEKMLYNITEKALVTTLQHL-----SLNEITSELSLLFTDDTHMAQI 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R +KPTNVLSFP + LMLGDIV+A E + EA K F++HL H+I Sbjct: 57 NARWRNHNKPTNVLSFPAFPLKAGQNPKLMLGDIVIAQETVMREAEEEKKSFQDHLTHII 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH + +A ME LE+ IL+ L I DPY Sbjct: 117 IHGILHLLGYDHETNDEANQMEKLEKEILQKLTIKDPY 154 >gi|27375904|ref|NP_767433.1| hypothetical protein bll0793 [Bradyrhizobium japonicum USDA 110] gi|46577464|sp|Q89W99|RRMF_BRAJA RecName: Full=Probable rRNA maturation factor gi|27349042|dbj|BAC46058.1| bll0793 [Bradyrhizobium japonicum USDA 110] Length = 183 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 68/142 (47%), Positives = 88/142 (61%), Gaps = 8/142 (5%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVE--LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 E V +AV+ + V E++ E ++++ TD I TLN +RGIDKPTNVLSFP Sbjct: 38 SEAVIQRAVA---AAAESVDEDVAEAEVAVMLTDDAGIRTLNSNWRGIDKPTNVLSFPAL 94 Query: 90 FAS---SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 +G + MLGDI +AYE + EA+ K F++HL HL +HGFLHL+GYDH +D Sbjct: 95 QPEGEWKEGDAPRMLGDIAIAYETMRREADEEKKPFDHHLSHLAVHGFLHLIGYDHENDD 154 Query: 147 DACVMEGLERSILEDLGINDPY 168 DA ME LE IL LGI DPY Sbjct: 155 DAEEMEALETQILAHLGIPDPY 176 >gi|92115656|ref|YP_575385.1| hypothetical protein Nham_0023 [Nitrobacter hamburgensis X14] gi|122418988|sp|Q1QS72|RRMF_NITHX RecName: Full=Probable rRNA maturation factor gi|91798550|gb|ABE60925.1| protein of unknown function UPF0054 [Nitrobacter hamburgensis X14] Length = 190 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/117 (55%), Positives = 77/117 (65%), Gaps = 3/117 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEII 111 EL+++ TD I TLN +RGIDKPTNVLSFP A S + MLGDI +AYE + Sbjct: 67 AELAIMLTDDAGIRTLNANWRGIDKPTNVLSFPALQPTGAPSPDDAPRMLGDIAIAYETL 126 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K F++HL HL IHGFLHL+GYDH D++A ME LER IL LGI DPY Sbjct: 127 RREACDEHKPFDHHLSHLTIHGFLHLIGYDHETDEEAGEMENLERKILARLGIPDPY 183 >gi|319406554|emb|CBI80196.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 158 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/154 (43%), Positives = 89/154 (57%), Gaps = 5/154 (3%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +E+A W +E L + E + +L + E ELSL+FTD + +N + Sbjct: 6 ITIESAKWNNEKMLYNITEKALVTTLQHL-----SLNEITSELSLLFTDDTHMAQINARW 60 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R +KPTNVLSFP + LMLGDIV+A E + EA K F++HL H+IIHG Sbjct: 61 RNHNKPTNVLSFPAFPLKAGQNPKLMLGDIVIAQETVMREAEEEKKSFQDHLTHIIIHGI 120 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLLGYDH + +A ME LE+ IL+ L I DPY Sbjct: 121 LHLLGYDHETNDEANQMEKLEKEILQKLTIKDPY 154 >gi|307942737|ref|ZP_07658082.1| putative metalloprotease [Roseibium sp. TrichSKD4] gi|307773533|gb|EFO32749.1| putative metalloprotease [Roseibium sp. TrichSKD4] Length = 171 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 72/159 (45%), Positives = 95/159 (59%), Gaps = 6/159 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L + +++E WG L+ LCE +AV+ ++ G FV + ELS+V TD I+ L Sbjct: 10 LTIDLSIEAGDWGPLEPLKKLCE----RAVAETLASGLFVVPH-SELSVVLTDDASIKVL 64 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R DKPTNVLSFP + + L LGDIV+A E + EA+ +G EF HL HL Sbjct: 65 NNNWRQKDKPTNVLSFPGSDPDDERYGPL-LGDIVVALETVTREADEMGIEFPAHLTHLF 123 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHL YDH D ++A VME ER I+ LG DPYE Sbjct: 124 VHGLLHLFDYDHQDLEEAEVMERKERQIMRCLGYEDPYE 162 >gi|75674215|ref|YP_316636.1| hypothetical protein Nwi_0016 [Nitrobacter winogradskyi Nb-255] gi|123614405|sp|Q3SWQ7|RRMF_NITWN RecName: Full=Probable rRNA maturation factor gi|74419085|gb|ABA03284.1| Protein of unknown function [Nitrobacter winogradskyi Nb-255] Length = 190 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 68/142 (47%), Positives = 86/142 (60%), Gaps = 8/142 (5%) Query: 32 CEVVFAKAVSNLISKGYFVKENI-VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 E V +A++ + G K+ EL+++ TD I TLN +RG+DKPTNVLSFP A Sbjct: 45 AEAVIHRAIAT--AAGMVDKDTGDAELAIMLTDDAGIRTLNANWRGLDKPTNVLSFP-AL 101 Query: 91 ASSDGC----SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + C MLGDI +AYE + EA K F++HL HL +HGFLHL+GYDH D Sbjct: 102 QPTGPCLPDDPPRMLGDIAIAYETLRREAGDERKTFDHHLSHLAVHGFLHLIGYDHETDG 161 Query: 147 DACVMEGLERSILEDLGINDPY 168 +A ME LER IL LGI DPY Sbjct: 162 EAEEMESLERQILAQLGIPDPY 183 >gi|316931569|ref|YP_004106551.1| hypothetical protein Rpdx1_0174 [Rhodopseudomonas palustris DX-1] gi|315599283|gb|ADU41818.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris DX-1] Length = 167 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/116 (53%), Positives = 75/116 (64%), Gaps = 3/116 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--SSDGCSSLMLGDIVLAYEIIE 112 EL+++ TD I LN +RG DKPTNVLSFP A DG MLGDI +AY+ + Sbjct: 46 AELAVMLTDDEHIRALNASFRGKDKPTNVLSFPAAQPEVQPDGAPR-MLGDIAIAYQTVR 104 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ GK F +HL HL +HGFLHL+GYDH D+ A ME ER+IL LGI DPY Sbjct: 105 READDEGKPFGHHLSHLAVHGFLHLVGYDHETDQQADEMEDAERTILARLGIPDPY 160 >gi|115522233|ref|YP_779144.1| hypothetical protein RPE_0204 [Rhodopseudomonas palustris BisA53] gi|122298061|sp|Q07V70|RRMF_RHOP5 RecName: Full=Probable rRNA maturation factor gi|115516180|gb|ABJ04164.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris BisA53] Length = 172 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/116 (50%), Positives = 77/116 (66%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGCSSLMLGDIVLAYEIIE 112 EL+++ +D + TLN +RG+DKPTNVLSFP A+ + MLGDI +AYE Sbjct: 45 AELAVMLSDDAGVRTLNANWRGLDKPTNVLSFPALQPSATMPDDAPRMLGDIAIAYETTR 104 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ GK F++HL HL +HGFLHL+GYDH + +A ME LER IL LG+ DPY Sbjct: 105 READDEGKPFDHHLSHLAVHGFLHLVGYDHETESEAEAMEQLERRILAQLGVPDPY 160 >gi|240849890|ref|YP_002971278.1| hypothetical protein Bgr_02340 [Bartonella grahamii as4aup] gi|240267013|gb|ACS50601.1| hypothetical protein Bgr_02340 [Bartonella grahamii as4aup] Length = 163 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 7/157 (4%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV-ELSLVFTDSHRIETLN 71 + I V++ W DE L + E KA+ + + + N+V E+SL+FTD + +N Sbjct: 4 IDIMVKSGGWNDEKMLYNITE----KAL--MTTMHHVSLANVVSEISLLFTDDKHMAQIN 57 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 ++R +K TNVLSFP + MLGDI++A E + +EA GK F++HL H+I+ Sbjct: 58 AQWRNKNKSTNVLSFPAFPLKAGNPPGPMLGDIIIARETVVLEAEKQGKTFQDHLTHMIV 117 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG LHLLGYDH D +A ME LER IL+ L I DPY Sbjct: 118 HGILHLLGYDHETDNEAYQMEKLEREILQKLSIKDPY 154 >gi|325291792|ref|YP_004277656.1| hypothetical protein AGROH133_03547 [Agrobacterium sp. H13-3] gi|325059645|gb|ADY63336.1| hypothetical protein AGROH133_03547 [Agrobacterium sp. H13-3] Length = 168 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/159 (48%), Positives = 94/159 (59%), Gaps = 1/159 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIET 69 LD+QI+VE W E L AV L + + VELSLVFTD I Sbjct: 4 LDIQISVEAEGWSSEEDLLAFATKALDAAVDFLKREENQPFPKMPVELSLVFTDDENIRE 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+R DK TNVLSFP G MLGDIV+A E +E EA L K FE+HL HL Sbjct: 64 INAEWRDKDKATNVLSFPAFPLEPGGMPGPMLGDIVIARETVEREALELEKSFEDHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HGFLHL GYDH+D+++A ME LE IL LG++DPY Sbjct: 124 LVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSDPY 162 >gi|217979026|ref|YP_002363173.1| protein of unknown function UPF0054 [Methylocella silvestris BL2] gi|254801577|sp|B8ETG9|RRMF_METSB RecName: Full=Probable rRNA maturation factor gi|217504402|gb|ACK51811.1| protein of unknown function UPF0054 [Methylocella silvestris BL2] Length = 176 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/157 (47%), Positives = 95/157 (60%), Gaps = 7/157 (4%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + IAVE W TL E V + +S S E E+S+VF D I LN Sbjct: 5 IDIAVEAEAWESFEDPATLAETVIVQTISQ--SGAKLAAE--AEISIVFCDDAFIADLNR 60 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++RG+DKPTNVLSFP+ + + +LGDIV+AYE E EA GK F +H+ HLI H Sbjct: 61 KWRGVDKPTNVLSFPSGGPIA---VTPVLGDIVIAYETTEREAQEAGKPFRDHVAHLIAH 117 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GFLHL+GYDH+ DA ME LERS+L LGI+DPY+ Sbjct: 118 GFLHLIGYDHLAAADAEAMEALERSVLARLGIDDPYQ 154 >gi|49475036|ref|YP_033077.1| hypothetical protein BH02240 [Bartonella henselae str. Houston-1] gi|59799036|sp|Q6G4V8|RRMF_BARHE RecName: Full=Probable rRNA maturation factor gi|49237841|emb|CAF27036.1| hypothetical protein BH02240 [Bartonella henselae str. Houston-1] Length = 158 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 100/160 (62%), Gaps = 9/160 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV-ELSLVFTDSHRIET 69 + + I VE+ W DE L + E KA+ ++ + EN+V E+SL+FTD + Sbjct: 2 ITIDILVESDGWNDEKMLYNITE----KALKTIMH--HLSLENVVSEISLLFTDDKHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS-SLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N ++RG +K TNVLSFP AF G S MLGDI++A E + +EA K F++HL H Sbjct: 56 INAQWRGKNKSTNVLSFP-AFPLKVGDSPGPMLGDIIIARETVVLEAENEAKSFQDHLTH 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +I+HG LHLLGY+H +++A ME LER IL+ L I DPY Sbjct: 115 MIVHGILHLLGYNHETNEEASHMEELERKILQKLSIKDPY 154 >gi|146337217|ref|YP_001202265.1| putative metal-dependent hydrolase [Bradyrhizobium sp. ORS278] gi|146190023|emb|CAL74015.1| conserved hypothetical protein; putative metal-dependent hydrolase [Bradyrhizobium sp. ORS278] Length = 180 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/117 (52%), Positives = 74/117 (63%), Gaps = 3/117 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEII 111 E++++ TD I TLN +RGIDKPTNVLSFP D + MLGDI +AYE + Sbjct: 57 AEIAVMLTDDGGIRTLNSNWRGIDKPTNVLSFPALQPTGPRGDEDAPRMLGDIAIAYETM 116 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ K F +HL HL +HGFLHL+GYDH D +A ME LE IL LGI DPY Sbjct: 117 RREADEEQKPFAHHLSHLTVHGFLHLIGYDHETDDEAEEMEALETEILAHLGIPDPY 173 >gi|254295427|ref|YP_003061450.1| hypothetical protein Hbal_3085 [Hirschia baltica ATCC 49814] gi|254043958|gb|ACT60753.1| protein of unknown function UPF0054 [Hirschia baltica ATCC 49814] Length = 161 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 88/137 (64%), Gaps = 5/137 (3%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 CE + A+ K + +VE+ + T+ ++TLN ++RG DKPT+VLSFP A Sbjct: 26 CEAIIETALEAAAQK--TGESGLVEV--LLTNDAEMQTLNAQWRGKDKPTDVLSFPAEGA 81 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 S G + LGD+ L ++ + +++ LG++F H++HL++HGFLHLLGYDH+ D +A M Sbjct: 82 SMPGMQTF-LGDLALGLDVAKADSDKLGRDFRLHVMHLLVHGFLHLLGYDHMSDDEANTM 140 Query: 152 EGLERSILEDLGINDPY 168 EGLE IL LG+ DPY Sbjct: 141 EGLEAQILAPLGLPDPY 157 >gi|163797132|ref|ZP_02191087.1| hypothetical protein BAL199_11501 [alpha proteobacterium BAL199] gi|159177648|gb|EDP62201.1| hypothetical protein BAL199_11501 [alpha proteobacterium BAL199] Length = 182 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 91/161 (56%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTL---CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +DL + V++ W R L E V KAV + ++ VELS+V D + Sbjct: 21 VDLMVRVDHTDW------RALLDDPETVVEKAVLAALDA---LEPEAVELSVVLADDAAV 71 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN ++RG D PTNVLSFP AF G L GD++LA E ++ EA GK +HL Sbjct: 72 RALNRDHRGKDAPTNVLSFPPAFVPPAGPRPL--GDVILALETVQREAVEQGKATVDHLR 129 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LHL GYDH + DA ME LER+IL LG+ DPY Sbjct: 130 HLVVHGVLHLSGYDHETESDAEEMEDLERTILAGLGVADPY 170 >gi|23015403|ref|ZP_00055180.1| COG0319: Predicted metal-dependent hydrolase [Magnetospirillum magnetotacticum MS-1] Length = 164 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 11/163 (6%) Query: 11 LDLQIAVENALWGDEI-HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ + ++ W D + C + A A+ + + E +VELS+V D ++ Sbjct: 5 IDIAVDIQYPAWTDVLPDAEARCGRLAATALGAV-----DLPEGVVELSIVLADDATVQG 59 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC----SSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN ++RG D+PTNVLSF + D + L+LGD++LAYE EA GK +H Sbjct: 60 LNRDWRGKDQPTNVLSF-ASLDDEDAPLVPGAPLLLGDVILAYETCAAEAKDQGKTLADH 118 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LHLLGYDH+DD++A ME LE ++L LGI DPY Sbjct: 119 FGHLVVHGVLHLLGYDHMDDEEAAEMESLETTLLAALGIADPY 161 >gi|260431175|ref|ZP_05785146.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415003|gb|EEX08262.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 164 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 98/172 (56%), Gaps = 20/172 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L+I+VE++ W E + +AVS ++ + ++ E+S++ D RI L Sbjct: 1 MNLEISVEDSRW-------QRLEELSRRAVSATLAY-LRMNPDLCEVSILGCDDSRIAEL 52 Query: 71 NFEYRGIDKPTNVLSFPT------------AFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+RG PTNVLS+P D ++LGDI ++Y+ EAN Sbjct: 53 NNEFRGKPAPTNVLSWPAEDLAPEEPGATPPLPEPDFTGEIVLGDIAISYDTCLREANEA 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GK ++H+VHLI+HG LHLLGYDHV D DA +MEG E IL LGI++PY V Sbjct: 113 GKSMDDHVVHLIVHGVLHLLGYDHVRDPDATLMEGCEIEILGKLGIDNPYNV 164 >gi|170747071|ref|YP_001753331.1| hypothetical protein Mrad2831_0637 [Methylobacterium radiotolerans JCM 2831] gi|170653593|gb|ACB22648.1| protein of unknown function UPF0054 [Methylobacterium radiotolerans JCM 2831] Length = 159 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 4/158 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ +AVE+A W E + L E + +AV ++ + VE+S++ TD + LN Sbjct: 4 EIDLAVEDARW--ETAVADL-EALVTRAVEAGLAVAPEKPDGPVEVSVLLTDDAAVRELN 60 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +RG DKPTNVLSFP A +++ LGD+VLAYE + E+ K +NHL HL++ Sbjct: 61 RTWRGKDKPTNVLSFPAAPQPRHAGTAVPLGDVVLAYETLVRESAEQSKPLQNHLAHLLV 120 Query: 132 HGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 HG LH LG DH + + +A ME LE + L LGI DPY Sbjct: 121 HGTLHCLGQDHEIGETEADAMEALEVAALATLGIPDPY 158 >gi|209966241|ref|YP_002299156.1| hypothetical protein RC1_2976 [Rhodospirillum centenum SW] gi|209959707|gb|ACJ00344.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 226 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 93/187 (49%), Gaps = 37/187 (19%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 +AVE+ W E L E + A +++G V + ELS+V D + TLN +Y Sbjct: 19 VAVESGGW--ETDLPD-AETLVLTAAEAALARGEGVPDGPAELSVVLADDATVRTLNRDY 75 Query: 75 RGIDKPTNVLSFPTAFASSDGCSS---------------------------------LML 101 RG D+PTNVLSF +A D + ++L Sbjct: 76 RGKDRPTNVLSF-ALYADGDDADTPPEGLEVEQDGPEGDIPGDDDAEDSLAQGDAPPVLL 134 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GD++LAYE + EA K +HL HL++HG LHLLGYDH+ D DA ME LE IL Sbjct: 135 GDVILAYETVVREAGEQNKPLADHLTHLVVHGVLHLLGYDHITDPDAERMERLETEILAG 194 Query: 162 LGINDPY 168 LGI+DPY Sbjct: 195 LGISDPY 201 >gi|154245756|ref|YP_001416714.1| hypothetical protein Xaut_1812 [Xanthobacter autotrophicus Py2] gi|154159841|gb|ABS67057.1| protein of unknown function UPF0054 [Xanthobacter autotrophicus Py2] Length = 176 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 59/113 (52%), Positives = 73/113 (64%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ TD RI LN E+RG DK TNVLSFP D + LGDI++A E + EA Sbjct: 59 EVAITLTDDARIRVLNREWRGKDKATNVLSFPQPDLPDDVDAPQPLGDIIVALETLTGEA 118 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +HL HL++HG LHLLGYDH+DD +A ME LER IL LGI+DPY Sbjct: 119 RAEDKTAGHHLAHLVVHGTLHLLGYDHIDDTEAEEMEALERRILAGLGIDDPY 171 >gi|56708799|ref|YP_164840.1| hypothetical protein SPOA0008 [Ruegeria pomeroyi DSS-3] gi|59799077|sp|Q5LLL4|RRMF_SILPO RecName: Full=Probable rRNA maturation factor gi|56680484|gb|AAV97149.1| conserved hypothetical protein TIGR00043 [Ruegeria pomeroyi DSS-3] Length = 165 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 20/173 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L + +E+ W T+ + +A+S +++ E + E+SL+ D RI L Sbjct: 1 MTLDLTLEDPRW-------TILPPLADRAISATLAQMGLDPE-LCEISLLGCDDARITAL 52 Query: 71 NFEYRGIDKPTNVLSFP-----------TAFAS-SDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R PTNVLS+P T A D ++ LGDI +A++ + EA+ Sbjct: 53 NAEFREKPSPTNVLSWPAEDLAAETPGGTPLAPEPDFTGAVPLGDIAIAFDTCQREADAA 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +H+ HLI+HG LHLLGYDH+ D+DA +MEGLE IL +LGI+DPY ++ Sbjct: 113 GKPIADHVTHLIVHGLLHLLGYDHIRDEDATLMEGLETRILGNLGIDDPYTME 165 >gi|254448604|ref|ZP_05062063.1| hypothetical protein GP5015_1989 [gamma proteobacterium HTCC5015] gi|198261793|gb|EDY86079.1| hypothetical protein GP5015_1989 [gamma proteobacterium HTCC5015] Length = 155 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 87/160 (54%), Gaps = 10/160 (6%) Query: 10 RLDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 +LD+ +V+ A W E +R A A++ S G V +EL L + Sbjct: 4 QLDIDPSVQGARWLPSEADVREWTSATLA-AITRSFSAGVEVSFKWLELELS-------Q 55 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +LN +YRG D PTNVLSFP DG L LGDI + ++E EA GK H H Sbjct: 56 SLNCDYRGKDSPTNVLSFPMQMPPIDGELEL-LGDIAICPAVVEREAGEQGKPLRAHWAH 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHL GYDH++D +A ME LER IL LGI DPY Sbjct: 115 MVVHGMLHLCGYDHIEDTEALEMEALERDILASLGIEDPY 154 >gi|13474616|ref|NP_106185.1| hypothetical protein mlr5536 [Mesorhizobium loti MAFF303099] gi|26006933|sp|Q98BK1|RRMF_RHILO RecName: Full=Probable rRNA maturation factor gi|14025370|dbj|BAB51971.1| mlr5536 [Mesorhizobium loti MAFF303099] Length = 166 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/160 (46%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P +D+ I+VE W DE L L + A + G ELS+VF+D I Sbjct: 12 PPVDIDISVEAGDWPDEAGLARLVDRAVDAAFAETGVTGR------SELSVVFSDDAHIR 65 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN E+RG DKPTNVLSFP + G MLGDIVLA E + EA + K +NH+ H Sbjct: 66 TLNAEWRGKDKPTNVLSFPAFPFAQGGPLPPMLGDIVLAAETVSREAALEDKPVQNHITH 125 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L+IHG LHLLG+DH D +A ME +ER+ L L I DPY Sbjct: 126 LVIHGLLHLLGHDHETDAEAEAMEAIERAALARLAIPDPY 165 >gi|319779780|ref|YP_004139256.1| hypothetical protein Mesci_0031 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165668|gb|ADV09206.1| protein of unknown function UPF0054 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 166 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/165 (47%), Positives = 97/165 (58%), Gaps = 13/165 (7%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV---ELSLVFTD 63 N+P +D+ IAVE W DE L L + +AV K F + + ELSLVF+D Sbjct: 11 NIP-VDIDIAVEAGNWPDEASLTRLVD----RAV-----KAAFAETGVAGRSELSLVFSD 60 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 I+ LN +RG DKPTNVLSFP + G MLGDIVLA E + EA + K E Sbjct: 61 DAHIQVLNAGWRGKDKPTNVLSFPAFPFAQGGPLPPMLGDIVLAAETVAHEAVLEDKPVE 120 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 NH+ HL+IHG LHLLGYDH + +A ME +ER+ L L I DPY Sbjct: 121 NHITHLVIHGLLHLLGYDHETEAEAEAMEAVERAALARLAIPDPY 165 >gi|118590491|ref|ZP_01547893.1| hypothetical protein SIAM614_02911 [Stappia aggregata IAM 12614] gi|118436954|gb|EAV43593.1| hypothetical protein SIAM614_02911 [Stappia aggregata IAM 12614] Length = 189 Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 60/114 (52%), Positives = 75/114 (65%), Gaps = 1/114 (0%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+SL+FTD I LN ++R DK TNVLSFP + D L LGDIV AYE + E Sbjct: 67 TEVSLLFTDDASIRQLNAKWRDKDKATNVLSFPGSDPQGDVYGPL-LGDIVFAYETVAAE 125 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A LG EF +HL HL +HG LHL YDH + ++A +ME LE++IL LGI+DPY Sbjct: 126 AADLGIEFSDHLTHLTVHGLLHLFDYDHQESEEAELMESLEKAILASLGIDDPY 179 >gi|323138530|ref|ZP_08073598.1| protein of unknown function UPF0054 [Methylocystis sp. ATCC 49242] gi|322396164|gb|EFX98697.1| protein of unknown function UPF0054 [Methylocystis sp. ATCC 49242] Length = 172 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 58/113 (51%), Positives = 71/113 (62%), Gaps = 3/113 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+ F D I LN E+RG DKPTNVLSFPT ++ +LGDIV+AYE + EA Sbjct: 44 ELSVNFCDDAEIRELNAEWRGKDKPTNVLSFPTPGTLAN---RPLLGDIVIAYETVAREA 100 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H H++IHGFLHL+GYDH +A ME LER I LG+ DPY Sbjct: 101 GEQAKTLRDHTAHMVIHGFLHLIGYDHETSAEAETMEALERRIAAGLGLRDPY 153 >gi|154254050|ref|YP_001414874.1| hypothetical protein Plav_3619 [Parvibaculum lavamentivorans DS-1] gi|171769693|sp|A7HZ84|RRMF_PARL1 RecName: Full=Probable rRNA maturation factor gi|154158000|gb|ABS65217.1| protein of unknown function UPF0054 [Parvibaculum lavamentivorans DS-1] Length = 185 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/124 (50%), Positives = 76/124 (61%), Gaps = 7/124 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-------SSLMLGDIVLA 107 EL +V D + LN YRG + PTNVLSFP A G ++ +LGD+VLA Sbjct: 58 AELCIVLGDDALVAKLNKAYRGKEGPTNVLSFPAAEMPDTGAPEAVFGGATPLLGDVVLA 117 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 E I EA K+F +HL HL +HG LHLLG+DH++D DA ME LER ILEDLGI DP Sbjct: 118 RETIAREALDQNKKFADHLSHLTVHGVLHLLGHDHMEDVDADEMEALERDILEDLGIADP 177 Query: 168 YEVD 171 Y D Sbjct: 178 YGAD 181 >gi|56550970|ref|YP_161809.1| hypothetical protein ZMO0074 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761440|ref|ZP_04759528.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753355|ref|YP_003226248.1| hypothetical protein Za10_1119 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59799005|sp|Q5NRF6|RRMF_ZYMMO RecName: Full=Probable rRNA maturation factor gi|56542544|gb|AAV88698.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis ZM4] gi|241374347|gb|EER63844.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552718|gb|ACV75664.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 176 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 88/154 (57%), Gaps = 6/154 (3%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 LW ++ + L + +AVS S K+ E+S+ F+D+ + LN +R D+P Sbjct: 11 LWPEQSNWEALAQTACQQAVSVSASDFLLAKDYETEISVCFSDNDTVHALNKTWRDKDRP 70 Query: 81 TNVLSFPTAFA------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 TNVLSFP A + S +LGDI+LA+++ + EA G ENH+ HLI HG Sbjct: 71 TNVLSFPMMEAEELAEIKNRVGSECLLGDIILAFDVAKKEALEKGISLENHVTHLITHGT 130 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLLGYDH+ D +A +ME LER L L I DPY Sbjct: 131 LHLLGYDHILDNEAEIMEDLERKALAQLDIPDPY 164 >gi|328545926|ref|YP_004306035.1| metalloprotease [polymorphum gilvum SL003B-26A1] gi|326415666|gb|ADZ72729.1| Putative metalloprotease [Polymorphum gilvum SL003B-26A1] Length = 178 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/162 (46%), Positives = 87/162 (53%), Gaps = 7/162 (4%) Query: 12 DLQI--AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 DLQI AVE W D L L A A N + E LSLVF D I Sbjct: 15 DLQIDLAVEAGDWPDGARLEDLTRAAVAAAFRNAPLRTLPGSE----LSLVFLDDDGIRA 70 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R DKPTNVLSF A G MLGDIVL+ + + EA G F +H HL Sbjct: 71 LNRSWRNKDKPTNVLSFSGGDAVG-GRYGPMLGDIVLSSDTLAREAKEQGISFCDHFSHL 129 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHL GYDH + +A +MEGLER IL DLGI DPY D Sbjct: 130 VVHGLLHLFGYDHQIEAEAEIMEGLERRILADLGIADPYAGD 171 >gi|254475005|ref|ZP_05088391.1| diacyglycerol kinase [Ruegeria sp. R11] gi|214029248|gb|EEB70083.1| diacyglycerol kinase [Ruegeria sp. R11] Length = 189 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/173 (40%), Positives = 95/173 (54%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I++E W L T E + +A ++S + + E+S++ D RI L Sbjct: 14 MGLDISIEEDRW-----LETDLEPLVIEATEAVLSH-FRLDPEACEISVLACDDARIAVL 67 Query: 71 NFEYRGIDKPTNVLSFP-----------TAFAS-SDGCSSLMLGDIVLAYEIIEIEANVL 118 N ++R KPTNVLS+P T A +D + LGDI +AYE EA Sbjct: 68 NEDFRQKAKPTNVLSWPAEELAAEEPGGTPMAPEADFTGEIPLGDIAIAYETCAREAQEA 127 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HLI+HG LHLLGYDH+ D DA +MEGLE IL +GI+DPY V+ Sbjct: 128 GKPLADHLRHLIVHGLLHLLGYDHIRDPDATLMEGLEVEILGKMGIDDPYTVE 180 >gi|319408020|emb|CBI81674.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 158 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 95/159 (59%), Gaps = 11/159 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV--ELSLVFTDSHRIETL 70 + I +E++ W +E +V++ L + + + N V ELSL+FT+ I + Sbjct: 4 IDITIEDSEWDNE-------DVLYDITTKALTTTMHHLSLNQVTSELSLLFTNDDHIAQI 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-SLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 N ++R +KPTNVLSFP AF G + MLGDI++A E I EA GK F++HL H+ Sbjct: 57 NAQWRSQNKPTNVLSFP-AFPLKVGQNPKPMLGDIIIARETIMREAKEEGKSFQDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGY+H + +A ME LER IL L I +PY Sbjct: 116 IVHGLLHLLGYNHETNDEANQMEMLEREILSKLSIKNPY 154 >gi|308050554|ref|YP_003914120.1| hypothetical protein Fbal_2844 [Ferrimonas balearica DSM 9799] gi|307632744|gb|ADN77046.1| protein of unknown function UPF0054 [Ferrimonas balearica DSM 9799] Length = 148 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+AVE D + + E A A+++ EL++ TD + L Sbjct: 3 LDLQLAVE----ADNLPSQAQLESWAALALADRPD---------AELTIRITDEAESQQL 49 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G +LGD+V+ ++ EA K +H H++ Sbjct: 50 NRDYRGKDKPTNVLSFP--FEAPPGIELPLLGDLVICAAVVAREAVEQEKAPMDHWAHMV 107 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 IHG LHL+GYDH+DD+DA ME LER +L LGI DPY+ Sbjct: 108 IHGCLHLIGYDHIDDEDAEEMESLERQLLAQLGIADPYQ 146 >gi|239996132|ref|ZP_04716656.1| hypothetical protein AmacA2_16882 [Alteromonas macleodii ATCC 27126] Length = 158 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 4/155 (2%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I V+ A GDE L + + +N + K + E E+++ FTD ++LN EY Sbjct: 5 IDVQQAFEGDEAILSAIPSPSELELWANAVLKYEGLAEQ--EVTIRFTDEAESQSLNHEY 62 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 RG DKPTNVLSFP F + G +LGD+V+ +I EA K+ NH H+ +HG Sbjct: 63 RGKDKPTNVLSFP--FEAPPGIEINLLGDLVICAPVISREAEEQHKDVSNHYAHMTVHGL 120 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL+GYDH+DD +A ME E IL LGI +PYE Sbjct: 121 LHLMGYDHIDDAEAEEMESKEIDILAHLGIANPYE 155 >gi|258621977|ref|ZP_05717006.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258627066|ref|ZP_05721862.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580584|gb|EEW05537.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258585730|gb|EEW10450.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 154 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 93/158 (58%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+AVEN E L T E FA+ ++ I+ F + E+++ D L Sbjct: 5 LDLQLAVEN-----ENGLPT--EADFAQWLTRTITP--FQPQ--AEVTIRIVDEKESHAL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H++ Sbjct: 54 NLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 112 VHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPY 149 >gi|262172030|ref|ZP_06039708.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451] gi|261893106|gb|EEY39092.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451] Length = 154 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 93/158 (58%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+AVE DE L T E FA+ ++ I+ F + E+++ D L Sbjct: 5 LDLQLAVE-----DENGLPT--EADFAQWLTRTITP--FQPQ--AEVTIRIVDEEESHAL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H++ Sbjct: 54 NLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 112 VHGSLHLLGYDHIEDDEAEEMESLETKIMQEMGFTDPY 149 >gi|198244509|ref|YP_002214657.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205351953|ref|YP_002225754.1| metalloprotease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856133|ref|YP_002242784.1| metalloprotease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226704003|sp|B5FNB0|RRMF_SALDC RecName: Full=Probable rRNA maturation factor YbeY gi|226704004|sp|B5QWB9|RRMF_SALEP RecName: Full=Probable rRNA maturation factor YbeY gi|226704005|sp|B5R815|RRMF_SALG2 RecName: Full=Probable rRNA maturation factor YbeY gi|197939025|gb|ACH76358.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271734|emb|CAR36568.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707936|emb|CAR32225.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326622412|gb|EGE28757.1| Putative metalloprotease ybeY [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626992|gb|EGE33335.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 157 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV-FTDSHRIET 69 LDLQ+A EN H E F + + +I + F +E V + LV T+SH Sbjct: 6 LDLQLACEN-------HAGLPDEAQFQRWLDGVIPQ--FQEEAEVTIRLVDETESH---D 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH+DD +A ME LE I+ +G DPY Sbjct: 112 VVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPY 150 >gi|303250397|ref|ZP_07336595.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252249|ref|ZP_07534146.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650723|gb|EFL80881.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860171|gb|EFM92187.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 163 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ ++ E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLAQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPY 155 >gi|262402696|ref|ZP_06079257.1| predicted metal-dependent hydrolase [Vibrio sp. RC586] gi|262351478|gb|EEZ00611.1| predicted metal-dependent hydrolase [Vibrio sp. RC586] Length = 154 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 93/158 (58%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+AVEN E L T E FA+ ++ I+ F + E+++ D L Sbjct: 5 LDLQLAVEN-----ENGLPT--EADFAQWLTRTITP--FQPQ--AEVTIRIVDEKESHML 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H++ Sbjct: 54 NLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 112 VHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPY 149 >gi|52425735|ref|YP_088872.1| putative metalloprotease [Mannheimia succiniciproducens MBEL55E] gi|59799096|sp|Q65RX3|RRMF_MANSM RecName: Full=Probable rRNA maturation factor gi|52307787|gb|AAU38287.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 156 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 90/161 (55%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA E D+ +L TL + F +N + +F E +++ D L Sbjct: 7 IDLQIASE-----DQSNLPTLEQ--FTLWATNAVRAEHFEPE----ITIRIVDEAESHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 NF YRG D+PTNVLSFP F + +LGD+V+ +++E EA GK H H++ Sbjct: 56 NFTYRGKDRPTNVLSFP--FECPEEVELPLLGDLVICRQVVEREAQEQGKPLTAHWAHMV 113 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I+ LG DPY D Sbjct: 114 VHGSLHLLGYDHIEDDEAVEMESLETEIMTGLGFEDPYSYD 154 >gi|152969255|ref|YP_001334364.1| putative metalloprotease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580847|ref|YP_002239693.1| conserved hypothetical protein TIGR00043 [Klebsiella pneumoniae 342] gi|238893719|ref|YP_002918453.1| putative metalloprotease [Klebsiella pneumoniae NTUH-K2044] gi|262041256|ref|ZP_06014467.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936535|ref|YP_003440594.1| hypothetical protein Kvar_3682 [Klebsiella variicola At-22] gi|290510409|ref|ZP_06549779.1| metalloprotease [Klebsiella sp. 1_1_55] gi|330005962|ref|ZP_08305446.1| translation metalloprotein YbeY [Klebsiella sp. MS 92-3] gi|167016753|sp|A6T6B3|RRMF_KLEP7 RecName: Full=Probable rRNA maturation factor gi|226701661|sp|B5XZQ2|RRMF_KLEP3 RecName: Full=Probable rRNA maturation factor gi|150954104|gb|ABR76134.1| hypothetical protein KPN_00684 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569905|gb|ACI11681.1| conserved hypothetical protein TIGR00043 [Klebsiella pneumoniae 342] gi|238546035|dbj|BAH62386.1| hypothetical protein KP1_1641 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041372|gb|EEW42432.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891244|gb|ADC59562.1| protein of unknown function UPF0054 [Klebsiella variicola At-22] gi|289777125|gb|EFD85123.1| metalloprotease [Klebsiella sp. 1_1_55] gi|328536034|gb|EGF62440.1| translation metalloprotein YbeY [Klebsiella sp. MS 92-3] Length = 157 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 91/158 (57%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E + E +F + V +I F +E+ EL++ D L Sbjct: 6 LDLQLACEETSGLPD-------EALFQRWVDAVIPP--FQEES--ELTIRLVDVAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA+ GK E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEASEQGKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A MEGLE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMEGLETEIMLALGYEDPY 150 >gi|262165202|ref|ZP_06032939.1| predicted metal-dependent hydrolase [Vibrio mimicus VM223] gi|262024918|gb|EEY43586.1| predicted metal-dependent hydrolase [Vibrio mimicus VM223] Length = 154 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE DE L T E FA+ ++ I+ F + E+++ D Sbjct: 4 ELDLQLAVE-----DENGLPT--EADFAQWLTRTITP--FQPQ--AEVTIRIVDEEESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEHEAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPY 149 >gi|16759620|ref|NP_455237.1| metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142607|ref|NP_805949.1| metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179266|ref|YP_215683.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615113|ref|YP_001589078.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168231684|ref|ZP_02656742.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236656|ref|ZP_02661714.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240518|ref|ZP_02665450.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264398|ref|ZP_02686371.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820206|ref|ZP_02832206.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443004|ref|YP_002039912.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448551|ref|YP_002044703.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470785|ref|ZP_03076769.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734762|ref|YP_002113779.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251252|ref|YP_002145645.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262278|ref|ZP_03162352.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390340|ref|ZP_03216951.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930535|ref|ZP_03221465.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213425076|ref|ZP_03357826.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213608001|ref|ZP_03368827.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647867|ref|ZP_03377920.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224582503|ref|YP_002636301.1| metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911618|ref|ZP_04655455.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825601|ref|ZP_06544787.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|26006915|sp|Q8Z8G6|RRMF_SALTI RecName: Full=Probable rRNA maturation factor YbeY gi|75484424|sp|Q57RQ9|RRMF_SALCH RecName: Full=Probable rRNA maturation factor YbeY gi|189041075|sp|A9MUI2|RRMF_SALPB RecName: Full=Probable rRNA maturation factor YbeY gi|226704002|sp|B5EZB0|RRMF_SALA4 RecName: Full=Probable rRNA maturation factor YbeY gi|238690245|sp|B4TB72|RRMF_SALHS RecName: Full=Probable rRNA maturation factor YbeY gi|238693560|sp|B4SYM8|RRMF_SALNS RecName: Full=Probable rRNA maturation factor YbeY gi|238693645|sp|B4TPY8|RRMF_SALSV RecName: Full=Probable rRNA maturation factor YbeY gi|254807367|sp|C0PW97|RRMF_SALPC RecName: Full=Probable rRNA maturation factor YbeY gi|25331411|pir||AI0583 conserved hypothetical protein STY0714 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501912|emb|CAD05139.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138238|gb|AAO69809.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126899|gb|AAX64602.1| putative metal-dependent hydrolase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364477|gb|ABX68245.1| hypothetical protein SPAB_02880 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401667|gb|ACF61889.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406855|gb|ACF67074.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457149|gb|EDX45988.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710264|gb|ACF89485.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197214955|gb|ACH52352.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240533|gb|EDY23153.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290423|gb|EDY29779.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602785|gb|EDZ01331.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320469|gb|EDZ05672.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205334140|gb|EDZ20904.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340341|gb|EDZ27105.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343173|gb|EDZ29937.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347119|gb|EDZ33750.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224467030|gb|ACN44860.1| hypothetical protein SPC_0685 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320084941|emb|CBY94730.1| putative metalloprotease ybeY [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613206|gb|EFY10149.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621274|gb|EFY18131.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623694|gb|EFY20532.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628966|gb|EFY25745.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631688|gb|EFY28442.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637576|gb|EFY34278.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641916|gb|EFY38546.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646760|gb|EFY43266.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651461|gb|EFY47841.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653088|gb|EFY49422.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658809|gb|EFY55064.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664922|gb|EFY61115.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668924|gb|EFY65076.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670570|gb|EFY66703.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675311|gb|EFY71387.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682218|gb|EFY78243.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684953|gb|EFY80950.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713732|gb|EFZ05303.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193989|gb|EFZ79191.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197919|gb|EFZ83041.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202034|gb|EFZ87094.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207167|gb|EFZ92120.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210926|gb|EFZ95789.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214306|gb|EFZ99057.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219289|gb|EGA03780.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225500|gb|EGA09730.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231059|gb|EGA15175.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234109|gb|EGA18198.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238196|gb|EGA22254.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242570|gb|EGA26594.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248453|gb|EGA32387.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251332|gb|EGA35204.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323262139|gb|EGA45701.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264849|gb|EGA48350.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272314|gb|EGA55721.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 157 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A EN H E F + + +I + F +E V + LV D L Sbjct: 6 LDLQLACEN-------HAGLPDEAQFQRWLDGVIPQ--FQEEAEVTIRLV--DEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH+DD +A ME LE I+ +G DPY Sbjct: 113 VHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPY 150 >gi|84687997|ref|ZP_01015860.1| hypothetical protein 1099457000237_RB2654_18208 [Maritimibacter alkaliphilus HTCC2654] gi|84663978|gb|EAQ10479.1| hypothetical protein RB2654_18208 [Rhodobacterales bacterium HTCC2654] Length = 162 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 14/150 (9%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L L E A ++ L G E++L+ D RI LN E+R PTNVLS Sbjct: 15 LGLEALAETACAATLAKLGIAG-------AEIALLACDDDRIAALNTEFRDKPTPTNVLS 67 Query: 86 FPTAFASSDGCSS-------LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 +P+ +D + LGDI +AY+ EA GK +H+ HL++HG LHLL Sbjct: 68 WPSEERGADQPGGDPYPPEDMELGDIAIAYDTCAREAAEAGKPMVDHVTHLVVHGTLHLL 127 Query: 139 GYDHVDDKDACVMEGLERSILEDLGINDPY 168 GYDH+DDKDA +MEGLE IL +G+ DPY Sbjct: 128 GYDHIDDKDAALMEGLETEILGKMGLADPY 157 >gi|32033745|ref|ZP_00134040.1| COG0319: Predicted metal-dependent hydrolase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208174|ref|YP_001053399.1| putative metalloprotease [Actinobacillus pleuropneumoniae L20] gi|165976112|ref|YP_001651705.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150005|ref|YP_001968530.1| hypothetical protein APP7_0736 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263336|ref|ZP_07544954.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|171855089|sp|A3N058|RRMF_ACTP2 RecName: Full=Probable rRNA maturation factor gi|238692332|sp|B3GXC9|RRMF_ACTP7 RecName: Full=Probable rRNA maturation factor gi|126096966|gb|ABN73794.1| hypothetical protein APL_0694 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876213|gb|ABY69261.1| hypothetical protein APJL_0692 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915136|gb|ACE61388.1| hypothetical protein APP7_0736 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871398|gb|EFN03124.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 163 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ ++ E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLAQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESYELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPY 155 >gi|304395672|ref|ZP_07377555.1| protein of unknown function UPF0054 [Pantoea sp. aB] gi|304356966|gb|EFM21330.1| protein of unknown function UPF0054 [Pantoea sp. aB] Length = 157 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 90/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A EN E +F + +S ++ F E+ V + LV D L Sbjct: 6 LDLQVACENTA-------NLPDESLFHRWLSAAVTP--FQPESEVTVRLV--DEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAAEQGKSVEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A MEGLE I+ LG DPY Sbjct: 113 VHGTLHLLGYDHIEDDEADEMEGLETEIMLALGYPDPY 150 >gi|167550793|ref|ZP_02344549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168465846|ref|ZP_02699728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631609|gb|EDX50129.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205324293|gb|EDZ12132.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 157 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A EN H E F + + +I + F +E E+++ D L Sbjct: 6 LDLQLACEN-------HAGLPDEAQFQRWLDGVIPQ--FQEE--AEVTIRLVDEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH+DD +A ME LE I+ +G DPY Sbjct: 113 VHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPY 150 >gi|258544939|ref|ZP_05705173.1| metalloprotease [Cardiobacterium hominis ATCC 15826] gi|258519859|gb|EEV88718.1| metalloprotease [Cardiobacterium hominis ATCC 15826] Length = 161 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 2/125 (1%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD 103 ++ E +EL++ D+ ++ LN EYRG D PTNVLSFP + + +LGD Sbjct: 30 TARATLAIEEALELTIRLVDNDEMQELNREYRGKDYPTNVLSFPCDWDLPE--EPRLLGD 87 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +V+A ++ EA K E H H++IHGFLHLLGYDH++D DA ME ER+IL LG Sbjct: 88 VVIAAAVVNREAKEQKKTMEAHWAHIVIHGFLHLLGYDHIEDADAEKMENTERNILAQLG 147 Query: 164 INDPY 168 DPY Sbjct: 148 YADPY 152 >gi|297581339|ref|ZP_06943263.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534655|gb|EFH73492.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 154 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E FA +S I+ F + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAE--FALWLSRTITP--FQPQ--AEVTIRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++D+G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQDMGFTDPY 149 >gi|254285630|ref|ZP_04960594.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150424492|gb|EDN16429.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 154 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+AVEN E L + E FA ++ I+ + E+++ D L Sbjct: 5 LDLQLAVEN-----EHGLPSEAE--FALWLTRTITPF----QTQAEVTIRIVDEAESHAL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G + +LGD+V+ +++E EA K + H H++ Sbjct: 54 NLNYRGKDKPTNVLSFP--FEAPPGMAMDLLGDLVICRQVVEREAIEQNKPLQAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++D+G DPY Sbjct: 112 VHGSLHLLGYDHIEDDEAEEMESLETEIMQDMGFTDPY 149 >gi|56414203|ref|YP_151278.1| metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363127|ref|YP_002142764.1| metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|62901210|sp|Q5PLS8|RRMF_SALPA RecName: Full=Probable rRNA maturation factor YbeY gi|238689934|sp|B5BCD3|RRMF_SALPK RecName: Full=Probable rRNA maturation factor YbeY gi|56128460|gb|AAV77966.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094604|emb|CAR60125.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 157 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A EN H E F + + +I + F +E V + LV D L Sbjct: 6 LDLQLACEN-------HAGLPDEAQFQRWLDGVIPQ--FQEEAEVTIRLV--DEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH+DD +A ME LE I+ +G DPY Sbjct: 113 VHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPY 150 >gi|126735011|ref|ZP_01750757.1| hypothetical protein RCCS2_14079 [Roseobacter sp. CCS2] gi|126715566|gb|EBA12431.1| hypothetical protein RCCS2_14079 [Roseobacter sp. CCS2] Length = 166 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 93/162 (57%), Gaps = 18/162 (11%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 VE+ WGD + L ++ A+ L ++ ++ E+S++ D RI LN +RG Sbjct: 7 VEDPRWGD---INALAQIATDAALERL-----GLESSVFEISVLACDDARIAVLNEGFRG 58 Query: 77 IDKPTNVLSFPT--AFASSDGCSSLM--------LGDIVLAYEIIEIEANVLGKEFENHL 126 KPTNVLS+P+ A+ DG L LGDI +A++ EA GK ++H Sbjct: 59 KPKPTNVLSWPSDERAAAIDGEMPLAPRPGPDNELGDIAIAFDTCTREAAEAGKTMQDHT 118 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HL++HG LHLLG+DH D+DA +MEGLE IL LGI DPY Sbjct: 119 IHLLVHGTLHLLGFDHERDRDATLMEGLETEILGKLGIPDPY 160 >gi|294142166|ref|YP_003558144.1| hypothetical protein SVI_3395 [Shewanella violacea DSS12] gi|293328635|dbj|BAJ03366.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 158 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 15/170 (8%) Query: 1 MSVKKVNLP-RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 MS+ NL LDLQIA++N + R E+ A+ + +++ EL++ Sbjct: 1 MSLNHKNLELELDLQIAIDNK----SLPSREDFELWVHSALRDTMTQA--------ELTI 48 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 D +TLN YRG DKPTNVLSFP F + +LGD+V+ ++E EA Sbjct: 49 RIVDKAESQTLNSSYRGKDKPTNVLSFP--FEAPPEIDIPLLGDLVICAPVVEFEAKQQN 106 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K + H H+++HG LHLLGYDH+ D +A ME LE ++E LG N+PY+ Sbjct: 107 KSLKAHWAHMVVHGCLHLLGYDHIQDAEAEEMESLETQLIEKLGFNNPYK 156 >gi|16764045|ref|NP_459660.1| metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990678|ref|ZP_02571778.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|17865774|sp|O87574|RRMF_SALTY RecName: Full=Probable rRNA maturation factor YbeY gi|16419182|gb|AAL19619.1| putative metal-dependent hydrolase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205330884|gb|EDZ17648.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245940|emb|CBG23742.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992404|gb|ACY87289.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157268|emb|CBW16756.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911700|dbj|BAJ35674.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226248|gb|EFX51299.1| metal-dependent hydrolase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128985|gb|ADX16415.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987612|gb|AEF06595.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 157 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A EN H E F + + +I + F +E V + LV D L Sbjct: 6 LDLQLACEN-------HAGLPDEAQFQRWLDGVIPQ--FQEEAEVTIRLV--DEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPAGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH+DD +A ME LE I+ +G DPY Sbjct: 113 VHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPY 150 >gi|261341272|ref|ZP_05969130.1| putative metalloprotease [Enterobacter cancerogenus ATCC 35316] gi|288316577|gb|EFC55515.1| putative metalloprotease [Enterobacter cancerogenus ATCC 35316] Length = 155 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ DE +T + V + F +E+ V + LV D Sbjct: 6 LDLQLACEDNSGMPDEAQFQTWLDAVIPQ----------FQEESEVTIRLV--DEAESHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K + H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPGMEMPLLGDLIICRQVVEQEAKEQQKPLDAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH+DD +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIDDDEAEEMESLETEIMLALGYEDPY 150 >gi|307249902|ref|ZP_07531876.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858091|gb|EFM90173.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 163 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 92/163 (56%), Gaps = 8/163 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN+ + L + V +A+++ F + E+++ D Sbjct: 1 MTTPIIDLQIAAENS--ENLPSLEQFTQWV-QRALAHEAQTEDFPE---TEITIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 113 WTHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPY 155 >gi|156934830|ref|YP_001438746.1| putative metalloprotease [Cronobacter sakazakii ATCC BAA-894] gi|166228427|sp|A7MQS7|RRMF_ENTS8 RecName: Full=Probable rRNA maturation factor gi|156533084|gb|ABU77910.1| hypothetical protein ESA_02677 [Cronobacter sakazakii ATCC BAA-894] Length = 155 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E+ DE +T V + F +E+ V + LV D Sbjct: 6 LDLQVACEDTTGLPDEAQFQTWLNAVVPQ----------FQEESEVTVRLV--DEAESHD 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG+DKPTNVLSFP F + G +LGD+++ +++E EA K E H H+ Sbjct: 54 LNLTYRGMDKPTNVLSFP--FEAPPGIDMPLLGDLIICRQVVEREAREQEKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A MEG+E I+ LG +DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEGIETEIMLALGFDDPY 150 >gi|226331002|ref|ZP_03806520.1| hypothetical protein PROPEN_04932 [Proteus penneri ATCC 35198] gi|225201797|gb|EEG84151.1| hypothetical protein PROPEN_04932 [Proteus penneri ATCC 35198] Length = 155 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 64/159 (40%), Positives = 86/159 (54%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A EN E T E V + + + E+++ D Sbjct: 6 LDLQVASENTQGLPTEAQFMTWLEAVLPQF------------QPVSEVTIRIVDEAESHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEKEATEQSKTVEEHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +IHG LHLLGYDH++D +A MEGLE IL++LG DPY Sbjct: 112 VIHGCLHLLGYDHIEDDEAEEMEGLETEILQNLGYADPY 150 >gi|293397292|ref|ZP_06641564.1| metal-dependent hydrolase [Serratia odorifera DSM 4582] gi|291420210|gb|EFE93467.1| metal-dependent hydrolase [Serratia odorifera DSM 4582] Length = 157 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 89/159 (55%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLC-EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E H L E F + + ++ + F E V + LV D Sbjct: 6 LDLQIACE--------HANGLPDEAAFQRWLEGVLPQ--FQAEAEVTIRLV--DEAESHQ 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAVEQGKALEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGLGYQDPY 150 >gi|212712960|ref|ZP_03321088.1| hypothetical protein PROVALCAL_04058 [Providencia alcalifaciens DSM 30120] gi|212684438|gb|EEB43966.1| hypothetical protein PROVALCAL_04058 [Providencia alcalifaciens DSM 30120] Length = 155 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 92/158 (58%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA EN L T E +F + V+ ++ K F E+ E+++ D L Sbjct: 6 LDLQIASENT-----AGLPT--EAMFQRWVNAVLPK--FQAES--EVTIRVVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAAEQQKSEEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A MEGLE IL ++G DPY Sbjct: 113 VHGCLHLLGYDHIEDDEAEEMEGLETEILAEMGYADPY 150 >gi|303252387|ref|ZP_07338553.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247668|ref|ZP_07529709.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648846|gb|EFL79036.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855836|gb|EFM87998.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 163 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ ++ E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLAQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESYELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDVEAEEMEGLETEIMQSLGFEDPY 155 >gi|260913090|ref|ZP_05919572.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260632677|gb|EEX50846.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 156 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN + + + +AV +S VE+++ D L Sbjct: 6 IDLQIATENT---ENLPTEAQIQEWANRAVQPELSD--------VEMTVRIVDEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 NF YRG DKPTNVLSFP F D +LGD+V+ +++E EA GK H H++ Sbjct: 55 NFTYRGKDKPTNVLSFP--FECPDEVELGLLGDLVICRQVVEKEAEEQGKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMENLETEIMQSLGFEDPY 150 >gi|92114457|ref|YP_574385.1| hypothetical protein Csal_2336 [Chromohalobacter salexigens DSM 3043] gi|122419590|sp|Q1QV22|RRMF_CHRSD RecName: Full=Probable rRNA maturation factor gi|91797547|gb|ABE59686.1| protein of unknown function UPF0054 [Chromohalobacter salexigens DSM 3043] Length = 154 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 14/162 (8%) Query: 9 PRLDLQIAVENA--LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 P +D Q+A+E A L + L V A+ + ELS+ F + Sbjct: 3 PDIDRQVALETATELLPTQADLEAWVGAVLARHPDT----------DRHELSVRFVTADE 52 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + LN +YRG DKPTNVLSFP F + G +LGD+ + + ++ EA GK +H Sbjct: 53 SQALNRDYRGKDKPTNVLSFP--FEAPPGLPLALLGDLAICHAVVVDEAAEQGKPLAHHY 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H++IHG LHLLGYDH+DD++A ME LER +L I DPY Sbjct: 111 AHMVIHGTLHLLGYDHIDDREAEEMEALERELLAHFAIGDPY 152 >gi|163739045|ref|ZP_02146458.1| hypothetical protein RGBS107_09406 [Phaeobacter gallaeciensis BS107] gi|161387850|gb|EDQ12206.1| hypothetical protein RGBS107_09406 [Phaeobacter gallaeciensis BS107] Length = 176 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 91/172 (52%), Gaps = 20/172 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYF-VKENIVELSLVFTDSHRIETLN 71 L I++E+ W D + + A G+F + + ELSL+ D RI LN Sbjct: 3 LDISIEDTRWQDADLTTHAVQAIHAVL-------GHFGLDADDCELSLLACDDARIMELN 55 Query: 72 FEYRGIDKPTNVLSFPTAFASS------------DGCSSLMLGDIVLAYEIIEIEANVLG 119 E+R KPTNVLS+P SS D + LGDI +AYE EA G Sbjct: 56 TEFRQKAKPTNVLSWPAEDLSSEEAGDEPLLPEADFTGEIPLGDIAIAYETCAREAEDAG 115 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K +HL HLI+HG LHLLGYDH+ D DA +ME LE IL +GI+DPY +D Sbjct: 116 KSLADHLRHLIVHGVLHLLGYDHIRDPDATLMERLEVQILGKMGIDDPYTLD 167 >gi|197284345|ref|YP_002150217.1| metalloprotease [Proteus mirabilis HI4320] gi|227358511|ref|ZP_03842836.1| metal-dependent hydrolase [Proteus mirabilis ATCC 29906] gi|238693170|sp|B4EV26|RRMF_PROMH RecName: Full=Probable rRNA maturation factor gi|194681832|emb|CAR41113.1| conserved hypothetical protein [Proteus mirabilis HI4320] gi|227161222|gb|EEI46296.1| metal-dependent hydrolase [Proteus mirabilis ATCC 29906] Length = 155 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/159 (40%), Positives = 86/159 (54%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A EN E T E V + + I E+++ D Sbjct: 6 LDLQVATENTQGLPSEAQFITWLEAVLPQF------------QPISEVTIRIVDEAESHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D+PTNVLSFP F + +LGD+++ +++E EA+ K E H H+ Sbjct: 54 LNLTYRGKDRPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEKEADEQNKTVEEHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +IHG LHLLGYDH++D +A MEGLE IL+ LG DPY Sbjct: 112 VIHGCLHLLGYDHIEDDEAEEMEGLETEILQKLGYEDPY 150 >gi|229529945|ref|ZP_04419335.1| hypothetical protein VCG_003049 [Vibrio cholerae 12129(1)] gi|229333719|gb|EEN99205.1| hypothetical protein VCG_003049 [Vibrio cholerae 12129(1)] gi|327483684|gb|AEA78091.1| metal-dependent hydrolase [Vibrio cholerae LMA3894-4] Length = 154 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E FA ++ I+ F + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAE--FALWLTRTITP--FQPQ--AEVTVRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++D+G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQDMGFTDPY 149 >gi|163741714|ref|ZP_02149104.1| hypothetical protein RG210_04075 [Phaeobacter gallaeciensis 2.10] gi|161384887|gb|EDQ09266.1| hypothetical protein RG210_04075 [Phaeobacter gallaeciensis 2.10] Length = 176 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 92/174 (52%), Gaps = 20/174 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYF-VKENIVELSLVFTDSHRIET 69 + L I++E+ W D + + A G+F + + ELSL+ D RI Sbjct: 1 MTLDISIEDTRWQDADLTTHAVQAIHAVL-------GHFGLDADDCELSLLACDDARIME 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS------------DGCSSLMLGDIVLAYEIIEIEANV 117 LN E+R KPTNVLS+P SS D + LGDI +AYE EA Sbjct: 54 LNTEFRQKAKPTNVLSWPVEDLSSEEAGDEPLLPEADFTGEIPLGDIAIAYETCAREAED 113 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HLI+HG LHLLGYDH+ D DA +ME LE IL +GI+DPY +D Sbjct: 114 AGKSLADHLRHLIVHGVLHLLGYDHIRDPDATLMERLEVQILGKMGIDDPYTLD 167 >gi|86136019|ref|ZP_01054598.1| hypothetical protein MED193_17889 [Roseobacter sp. MED193] gi|85826893|gb|EAQ47089.1| hypothetical protein MED193_17889 [Roseobacter sp. MED193] Length = 170 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/171 (39%), Positives = 92/171 (53%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I +E++ W E L L A+ + + + E++L+ D +I LN Sbjct: 3 LEITIEDSRW-QEAGLEALAHQAVGAALGH-----FGLDPEDCEIALLACDDDQIAGLNA 56 Query: 73 EYRGIDKPTNVLSFPT------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 E+R PTNVLS+P A +D + LGDI +AY+ EA+ K Sbjct: 57 EFREKPVPTNVLSWPAEDLAASEPGGQPAVPEADFTGEIPLGDIAIAYDTCLREADAANK 116 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HL HLI+HG LHLLGYDH+ D DA VMEGLE IL +LG++DPY VD Sbjct: 117 PLADHLRHLIVHGVLHLLGYDHISDLDATVMEGLEVEILGNLGLDDPYTVD 167 >gi|332140831|ref|YP_004426569.1| hypothetical protein MADE_1007145 [Alteromonas macleodii str. 'Deep ecotype'] gi|238693281|sp|B4S0S0|RRMF_ALTMD RecName: Full=Probable rRNA maturation factor gi|327550853|gb|AEA97571.1| hypothetical protein MADE_1007145 [Alteromonas macleodii str. 'Deep ecotype'] Length = 158 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 2/116 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ FTD ++LN EYRG KPTNVLSFP F + G +LGD+V+ +I EA Sbjct: 44 EVTIRFTDEAESQSLNSEYRGKHKPTNVLSFP--FEAPPGIEINLLGDLVICAPVISREA 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K+ +H H+ +HG LHL+GYDH+DD +A MEG E IL LGI++PY+ D Sbjct: 102 EEQDKQVSDHYAHMTVHGLLHLMGYDHIDDAEAEEMEGKEIDILAQLGIDNPYDAD 157 >gi|291616692|ref|YP_003519434.1| YbeY [Pantoea ananatis LMG 20103] gi|291151722|gb|ADD76306.1| YbeY [Pantoea ananatis LMG 20103] gi|327393117|dbj|BAK10539.1| hypothetical UPF0054 protein YbeY [Pantoea ananatis AJ13355] Length = 157 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E D + + + AV+ F E+ V + LV D L Sbjct: 6 LDLQLACEQT---DNLPTESQFQRWLEAAVTP------FQPESEVTIRLV--DEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAQEQGKTPEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH++D +A MEG+E I+ LG DPY Sbjct: 113 IHGTLHLLGYDHIEDSEAEEMEGIETEIMLALGYPDPY 150 >gi|322514461|ref|ZP_08067501.1| metal-dependent hydrolase [Actinobacillus ureae ATCC 25976] gi|322119624|gb|EFX91692.1| metal-dependent hydrolase [Actinobacillus ureae ATCC 25976] Length = 163 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 91/163 (55%), Gaps = 8/163 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN+ + L + V +A+++ F + E+++ D Sbjct: 1 MTTPIIDLQIAAENS--ENLPSLEQFTQWV-QRALAHKAQTEDFPE---TEITIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F +G +LGD+++ ++E EA E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRHVVEKEAQEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 113 WAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPY 155 >gi|157376605|ref|YP_001475205.1| putative metalloprotease [Shewanella sediminis HAW-EB3] gi|189040151|sp|A8FZ04|RRMF_SHESH RecName: Full=Probable rRNA maturation factor gi|157318979|gb|ABV38077.1| protein of unknown function UPF0054 [Shewanella sediminis HAW-EB3] Length = 158 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A+EN+ + + K ++ EL++ D + L Sbjct: 12 LDLQLAIENSQLPSKQNFELWVRTALPKTMAE------------AELTIRIVDEAESQEL 59 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ ++E+EA K + H H++ Sbjct: 60 NSTYRGKDKPTNVLSFP--FEAPPEIEIPLLGDLIICAPVVELEALQQNKPLQAHWAHMV 117 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D +A ME LE ++E LG N+PY+ Sbjct: 118 VHGCLHLLGYDHINDAEAEEMESLETQLVESLGFNNPYK 156 >gi|147673894|ref|YP_001216433.1| putative metalloprotease [Vibrio cholerae O395] gi|153827447|ref|ZP_01980114.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153831226|ref|ZP_01983893.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|183179697|ref|ZP_02957908.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|262168626|ref|ZP_06036321.1| predicted metal-dependent hydrolase [Vibrio cholerae RC27] gi|172047421|sp|A5F2X4|RRMF_VIBC3 RecName: Full=Probable rRNA maturation factor gi|146315777|gb|ABQ20316.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148873296|gb|EDL71431.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149738624|gb|EDM52977.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|183013108|gb|EDT88408.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227012777|gb|ACP08987.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262022744|gb|EEY41450.1| predicted metal-dependent hydrolase [Vibrio cholerae RC27] Length = 154 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E FA +S I+ F + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAE--FALWLSRTITP--FQPQ--AEVTVRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPY 149 >gi|304320424|ref|YP_003854067.1| hypothetical protein PB2503_04252 [Parvularcula bermudensis HTCC2503] gi|303299326|gb|ADM08925.1| hypothetical protein PB2503_04252 [Parvularcula bermudensis HTCC2503] Length = 158 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/115 (47%), Positives = 70/115 (60%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++L TD ++ LN +RG D PTNVLSFP S+ L LGDI +AY + EA Sbjct: 40 IALRLTDDTELQALNKSFRGKDTPTNVLSFPADPFSTPPGEDLFLGDIAIAYGVCAREAE 99 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 + HL HLI+HGFLHLLGYDH D DA VME LE ++++ LG +PY D Sbjct: 100 ARAFPLDRHLAHLILHGFLHLLGYDHQSDADAAVMEDLEATLMDRLGYGNPYAGD 154 >gi|254486624|ref|ZP_05099829.1| conserved hypothetical protein TIGR00043 [Roseobacter sp. GAI101] gi|214043493|gb|EEB84131.1| conserved hypothetical protein TIGR00043 [Roseobacter sp. GAI101] Length = 171 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 67/171 (39%), Positives = 91/171 (53%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L I E+ W + L TL E + +L + ++ E++++ D RI LN Sbjct: 4 LDIVEEDPRWA-ALDLETLAESALITTLKHL-----NLDPDVSEITILACDDARIADLNA 57 Query: 73 EYRGIDKPTNVLSFPT--AFASSDGCSSLM----------LGDIVLAYEIIEIEANVLGK 120 ++RG PTNVLS+P A+ DG L LGDI ++Y+ EA GK Sbjct: 58 DFRGKPTPTNVLSWPADERGAAQDGGLPLTVTADFDGMLELGDIAISYDTCAKEARAAGK 117 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H+ HLIIHG LHLLGYDH D DA +MEG+E IL LG++DPY D Sbjct: 118 SMTDHVTHLIIHGTLHLLGYDHDRDADATLMEGIEVEILGKLGLDDPYRED 168 >gi|86747718|ref|YP_484214.1| hypothetical protein RPB_0592 [Rhodopseudomonas palustris HaA2] gi|123004691|sp|Q2J2K7|RRMF_RHOP2 RecName: Full=Probable rRNA maturation factor gi|86570746|gb|ABD05303.1| Protein of unknown function UPF0054 [Rhodopseudomonas palustris HaA2] Length = 195 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/120 (50%), Positives = 74/120 (61%), Gaps = 6/120 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS------LMLGDIVLAY 108 EL+++ TD I LN YRG DKPTNVLSFP G + +LGDI +AY Sbjct: 69 AELAVMLTDDDGIRALNASYRGQDKPTNVLSFPAPQPDYQGAAQGSDVAPKLLGDIAIAY 128 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + + EA+ GK F++HL HL +HGFLHL+GYDH D +A ME ER IL LGI DPY Sbjct: 129 QTVRREADDEGKRFDHHLSHLAVHGFLHLVGYDHETDAEAETMEAAERRILAGLGIPDPY 188 >gi|146329108|ref|YP_001210119.1| hypothetical protein DNO_1243 [Dichelobacter nodosus VCS1703A] gi|172047331|sp|A5EXA5|RRMF_DICNV RecName: Full=Probable rRNA maturation factor gi|146232578|gb|ABQ13556.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 155 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 54/114 (47%), Positives = 74/114 (64%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +E+++ D+ I LN EYRG + PTNVLSFP + + +LGDIV+A +I+ E Sbjct: 42 LEVTIRLVDNDEITELNAEYRGKNAPTNVLSFPCDWDLPE--EPRLLGDIVIAVQIVNQE 99 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K+ E H H+ IHG LHLL YDH+++K+A +ME LER+IL LG DPY Sbjct: 100 AKAQKKKMEQHWAHMTIHGLLHLLDYDHIEEKEAQIMEDLERTILAQLGFPDPY 153 >gi|15602910|ref|NP_245982.1| putative metalloprotease [Pasteurella multocida subsp. multocida str. Pm70] gi|13431990|sp|P57900|RRMF_PASMU RecName: Full=Probable rRNA maturation factor gi|12721379|gb|AAK03129.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 158 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 54/114 (47%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+++ D LN YRG DKPTNVLSFP F D +LGD+V+ +++E E Sbjct: 39 VEMTVRIVDEAESHDLNLTYRGKDKPTNVLSFP--FECPDEVELSLLGDLVICRQVVEKE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK H H+++HG LHLLGYDH++D +A MEGLE I++ LG +DPY Sbjct: 97 AEEQGKPLMAHWAHMVVHGCLHLLGYDHIEDAEAEEMEGLETEIMQSLGFDDPY 150 >gi|145298101|ref|YP_001140942.1| hypothetical protein ASA_1072 [Aeromonas salmonicida subsp. salmonicida A449] gi|166228140|sp|A4SJX2|RRMF_AERS4 RecName: Full=Probable rRNA maturation factor gi|142850873|gb|ABO89194.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 154 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG DKPTNVLSFP F + G +LGD+V+ +++E E Sbjct: 38 AEVTVRIVDEAESRELNLTYRGKDKPTNVLSFP--FEAPPGMELPLLGDLVICRQVVEQE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K E H H+++HG LHLLGYDH++D +A ME LER I+++LG DPY Sbjct: 96 ATEQNKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEQLERDIMQELGFADPY 149 >gi|300722330|ref|YP_003711615.1| putative metal-dependent hydrolase [Xenorhabdus nematophila ATCC 19061] gi|297628832|emb|CBJ89410.1| putative metal-dependent hydrolase [Xenorhabdus nematophila ATCC 19061] Length = 155 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 93/161 (57%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA EN E E +F + + ++ + F E+ V + LV D L Sbjct: 6 LDLQIACENPKGLPE-------EALFQRWLEGVLPQ--FQAESEVTIRLV--DEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVL+FP F S +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLTFP--FESPPEIELPLLGDLIICRQVVEKEAEEQQKTVEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH+D+ +A ME LE IL+ +G +DPY+++ Sbjct: 113 VHGSLHLLGYDHIDNDEAEEMEFLETEILKKMGYSDPYQIE 153 >gi|288959690|ref|YP_003450031.1| metal-dependent hydrolase [Azospirillum sp. B510] gi|288911998|dbj|BAI73487.1| metal-dependent hydrolase [Azospirillum sp. B510] Length = 168 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/124 (48%), Positives = 75/124 (60%), Gaps = 3/124 (2%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDI 104 Y +E ELS+V D + LN +YRG DKPTNVLSF A +MLGD+ Sbjct: 36 YDDEEGPAELSVVLADDALVHQLNRDYRGKDKPTNVLSFALTEAEEPEPEEGMPVMLGDV 95 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +LA+E + EA+ GK E+HL HL++HG LHLLGYDH D +A ME LE +L GI Sbjct: 96 ILAFETVVREASEQGKSLEDHLTHLVMHGVLHLLGYDHETDDEAEEMEALETRLLASFGI 155 Query: 165 NDPY 168 DPY Sbjct: 156 ADPY 159 >gi|229523248|ref|ZP_04412655.1| hypothetical protein VIF_000104 [Vibrio cholerae TM 11079-80] gi|262190519|ref|ZP_06048763.1| predicted metal-dependent hydrolase [Vibrio cholerae CT 5369-93] gi|229339611|gb|EEO04626.1| hypothetical protein VIF_000104 [Vibrio cholerae TM 11079-80] gi|262033592|gb|EEY52086.1| predicted metal-dependent hydrolase [Vibrio cholerae CT 5369-93] Length = 154 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E FA ++ I+ F + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAE--FALWLTRTITP--FQPQ--AEVTIRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPY 149 >gi|161504168|ref|YP_001571280.1| putative metalloprotease [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189041074|sp|A9MKB9|RRMF_SALAR RecName: Full=Probable rRNA maturation factor YbeY gi|160865515|gb|ABX22138.1| hypothetical protein SARI_02274 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 155 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A EN H E F + + +I + F + + V + LV D L Sbjct: 6 LDLQLACEN-------HSGLPDEAQFQRWLDGVIPQ--FQEASEVTIRLV--DEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQDKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH+DD +A ME LE I+ +G DPY Sbjct: 113 VHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPY 150 >gi|110636245|ref|YP_676453.1| hypothetical protein Meso_3921 [Mesorhizobium sp. BNC1] gi|123161515|sp|Q11BD7|RRMF_MESSB RecName: Full=Probable rRNA maturation factor gi|110287229|gb|ABG65288.1| protein of unknown function UPF0054 [Chelativorans sp. BNC1] Length = 163 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 57/114 (50%), Positives = 71/114 (62%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 LS++FTD + LN +RG DKPTNVLSFP + + GDI L YE + E Sbjct: 49 ASLSVLFTDDAEMRALNARFRGKDKPTNVLSFPAPDSMVPPGTPRHFGDIALGYETVSRE 108 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK FE+HL HL++HGFLHL G+DH + +A ME LER IL+ L I DPY Sbjct: 109 AKEEGKSFEHHLTHLVVHGFLHLAGHDHETEVEAEEMEQLEREILQSLAIGDPY 162 >gi|163752488|ref|ZP_02159677.1| hypothetical protein KT99_21054 [Shewanella benthica KT99] gi|161327632|gb|EDP98827.1| hypothetical protein KT99_21054 [Shewanella benthica KT99] Length = 158 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 15/170 (8%) Query: 1 MSVKKVNLP-RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 MS+ NL LDLQ+A +N + + + N EL++ Sbjct: 1 MSLNHNNLELDLDLQVATDNERLPSQEDFELWVRIALRDTM------------NQAELTI 48 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 D +TLN YRG DKPTNVLSFP F + +LGD+++ ++E EA Sbjct: 49 RIVDEAESQTLNSSYRGKDKPTNVLSFP--FEAPPEIDIPLLGDLIICAPVVEFEAKQQN 106 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K ++H H+++HG LHLLGYDH+ D +A ME LE ++E LG N+PY+ Sbjct: 107 KSLQSHWAHMVVHGCLHLLGYDHIQDAEAEEMESLETQLIESLGFNNPYK 156 >gi|218708743|ref|YP_002416364.1| putative metalloprotease [Vibrio splendidus LGP32] gi|254806592|sp|B7VKG1|RRMF_VIBSL RecName: Full=Probable rRNA maturation factor gi|218321762|emb|CAV17717.1| Hypothetical protein VS_0722 [Vibrio splendidus LGP32] Length = 153 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN + ++ K + +EN EL++ D+ Sbjct: 4 ELDLQLAVENE---QGLPTEQDIQLWLDKTIPQF-------QEN-AELTVRIVDTQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHEYRGKDKPTNVLSFP--FEAPPGIELDLLGDLIICRQVVEKEAEEQSKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQSMGFEDPY 149 >gi|221134936|ref|ZP_03561239.1| hypothetical protein GHTCC_08396 [Glaciecola sp. HTCC2999] Length = 162 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 98/161 (60%), Gaps = 6/161 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+Q A+ E + L + + K V+++++ +++ EL++ F DS ++L Sbjct: 8 IDIQWAISEPSQLSETQAQ-LSDDIIIKTVTSVLNNH---NDSVGELTIRFVDSVESQSL 63 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR DKPTNVLSFP D S +LGD+++ +++ EA K +H HLI Sbjct: 64 NHTYRDKDKPTNVLSFPAEIP--DFIESTLLGDLIICDAVVKTEAKEQQKSLIHHYQHLI 121 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG+DH+++ +A VME E ++L +LGI+DPY+VD Sbjct: 122 VHGTLHLLGFDHIENNEAVVMENHEIAVLNELGIDDPYQVD 162 >gi|121729827|ref|ZP_01682260.1| conserved hypothetical protein [Vibrio cholerae V52] gi|229512947|ref|ZP_04402413.1| hypothetical protein VCB_000590 [Vibrio cholerae TMA 21] gi|121628431|gb|EAX60925.1| conserved hypothetical protein [Vibrio cholerae V52] gi|229349840|gb|EEO14794.1| hypothetical protein VCB_000590 [Vibrio cholerae TMA 21] Length = 154 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E FA ++ I+ F + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAE--FALWLTRTITP--FQPQ--AEVTVRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPY 149 >gi|251790530|ref|YP_003005251.1| putative metalloprotease [Dickeya zeae Ech1591] gi|247539151|gb|ACT07772.1| protein of unknown function UPF0054 [Dickeya zeae Ech1591] Length = 161 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 86/159 (54%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E +L E + E V + + + E+++ D Sbjct: 6 LDLQIASEQSLGLPSEADFQRWLEAVLPQF------------QEVAEVTIRVVDEEESHH 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAVEQGKSTEEHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 112 VVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPY 150 >gi|15640976|ref|NP_230607.1| putative metalloprotease [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591013|ref|ZP_01678330.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153820004|ref|ZP_01972671.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153823312|ref|ZP_01975979.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081134|ref|YP_002809685.1| hypothetical protein VCM66_0916 [Vibrio cholerae M66-2] gi|229505440|ref|ZP_04394950.1| hypothetical protein VCF_000648 [Vibrio cholerae BX 330286] gi|229510890|ref|ZP_04400369.1| hypothetical protein VCE_002297 [Vibrio cholerae B33] gi|229518011|ref|ZP_04407455.1| hypothetical protein VCC_002035 [Vibrio cholerae RC9] gi|229608459|ref|YP_002879107.1| metalloprotease [Vibrio cholerae MJ-1236] gi|254848091|ref|ZP_05237441.1| metalloprotease [Vibrio cholerae MO10] gi|255744743|ref|ZP_05418694.1| predicted metal-dependent hydrolase [Vibrio cholera CIRS 101] gi|262161123|ref|ZP_06030234.1| predicted metal-dependent hydrolase [Vibrio cholerae INDRE 91/1] gi|298498924|ref|ZP_07008731.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|26006919|sp|Q9KTE2|RRMF_VIBCH RecName: Full=Probable rRNA maturation factor gi|254807269|sp|C3LTK8|RRMF_VIBCM RecName: Full=Probable rRNA maturation factor gi|9655419|gb|AAF94122.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547123|gb|EAX57255.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126509455|gb|EAZ72049.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519176|gb|EAZ76399.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227009022|gb|ACP05234.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229344726|gb|EEO09700.1| hypothetical protein VCC_002035 [Vibrio cholerae RC9] gi|229350855|gb|EEO15796.1| hypothetical protein VCE_002297 [Vibrio cholerae B33] gi|229357663|gb|EEO22580.1| hypothetical protein VCF_000648 [Vibrio cholerae BX 330286] gi|229371114|gb|ACQ61537.1| hypothetical protein VCD_003377 [Vibrio cholerae MJ-1236] gi|254843796|gb|EET22210.1| metalloprotease [Vibrio cholerae MO10] gi|255737774|gb|EET93168.1| predicted metal-dependent hydrolase [Vibrio cholera CIRS 101] gi|262028873|gb|EEY47526.1| predicted metal-dependent hydrolase [Vibrio cholerae INDRE 91/1] gi|297543257|gb|EFH79307.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 154 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E FA ++ I+ F + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAE--FALWLTRTITP--FQAQ--AEVTVRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPSGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPY 149 >gi|260773263|ref|ZP_05882179.1| predicted metal-dependent hydrolase [Vibrio metschnikovii CIP 69.14] gi|260612402|gb|EEX37605.1| predicted metal-dependent hydrolase [Vibrio metschnikovii CIP 69.14] Length = 154 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 92/161 (57%), Gaps = 17/161 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCE--VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 LDLQIAVE DE L + + + F+ AV+ S+ E+++ D Sbjct: 4 ELDLQIAVE-----DEQGLPSFDDFLIWFSAAVTPFQSQA--------EVTIRIVDQAES 50 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YRG DKPTNVLSFP F + +LGD+V+ +++E EA K H Sbjct: 51 HQLNLNYRGKDKPTNVLSFP--FEAPAEIELDLLGDLVICRQVVEQEALEQEKPLMAHWA 108 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+++HG LHLLGYDH+DD++A ME LE I++++G +DPY Sbjct: 109 HMVVHGTLHLLGYDHIDDQEADEMEALETEIMQNMGFDDPY 149 >gi|110834797|ref|YP_693656.1| hypothetical protein ABO_1936 [Alcanivorax borkumensis SK2] gi|123345401|sp|Q0VN64|RRMF_ALCBS RecName: Full=Probable rRNA maturation factor gi|110647908|emb|CAL17384.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 175 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 67/165 (40%), Positives = 87/165 (52%), Gaps = 13/165 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +D+Q A + DE HL CE V A I+ G V + ++L D Sbjct: 4 IPTPTVDIQWASDAPDAPDETHL---CEWVRHAA----IAAGGVVGD----ITLRIVDEE 52 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 I TLN +YR D PTNVLSFP +G ++GDI++ ++ EAN K Sbjct: 53 EIRTLNRDYRDKDAPTNVLSFPFEMPEGLPEGAMDPLVGDIIICAAVVRREANEQHKPLV 112 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H++ HG LHLLGYDH+DD DA VME LE L +LG DPY Sbjct: 113 AHWAHMVTHGVLHLLGYDHIDDDDAIVMETLEIRALGELGFPDPY 157 >gi|307245551|ref|ZP_07527638.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254505|ref|ZP_07536341.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258964|ref|ZP_07540695.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853610|gb|EFM85828.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862555|gb|EFM94513.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866988|gb|EFM98845.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 163 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ ++ E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLAQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DK TNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESHELNLTYRGKDKSTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPY 155 >gi|88798162|ref|ZP_01113748.1| hypothetical protein MED297_12927 [Reinekea sp. MED297] gi|88778938|gb|EAR10127.1| hypothetical protein MED297_12927 [Reinekea sp. MED297] Length = 163 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 66/163 (40%), Positives = 90/163 (55%), Gaps = 18/163 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA + E F + VS +S GY + VE+S+ + + L Sbjct: 6 LDLQIATDAE--------NIPAEASFRQWVSAALS-GY---DREVEMSIRVVSAEESQDL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHL 126 N YRG DKPTNVLSFP F + G + +LGD+V+ ++E EA K +H Sbjct: 54 NATYRGKDKPTNVLSFP--FEAPPGVADAGIDRLLGDLVICAPVVEEEAQAQRKHLSHHW 111 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+++HG LHLLGYDH++D +A ME ER+IL L I DPY+ Sbjct: 112 AHMVVHGTLHLLGYDHIEDDEAEQMEQAERTILAALSIPDPYQ 154 >gi|260597075|ref|YP_003209646.1| metal-binding heat shock protein [Cronobacter turicensis z3032] gi|260216252|emb|CBA29173.1| Putative metalloprotease ESA_02677 [Cronobacter turicensis z3032] Length = 155 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/159 (40%), Positives = 89/159 (55%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E+ DE +T V + F +E+ V + LV D Sbjct: 6 LDLQVACEDTSGLPDEAQFQTWLNAVVPQ----------FQEESEVTVRLV--DEAESHD 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG+DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 54 LNLTYRGMDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEREAREQEKPLAAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A MEG+E I+ LG +DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEGIETEIMLALGFDDPY 150 >gi|153213843|ref|ZP_01949049.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124115677|gb|EAY34497.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 154 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E FA ++ I+ F + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAE--FALWLTRTITP--FQAQ--AEVTVRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPY 149 >gi|256821543|ref|YP_003145506.1| hypothetical protein Kkor_0317 [Kangiella koreensis DSM 16069] gi|256795082|gb|ACV25738.1| protein of unknown function UPF0054 [Kangiella koreensis DSM 16069] Length = 169 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A +++ DEI ++ F + + E+++ + + L Sbjct: 9 LDLQVACDSSTVPDEIDIKQWLATAFEVEAAKFGRAKTLAQP--FEMTVRVVEQAESQAL 66 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLV 127 N +YRG D PTNVLSFP F +G L +LGD+ + E++E EA KE +H Sbjct: 67 NNDYRGKDNPTNVLSFP--FEMPEGIEGLELSILGDLAICAEVVEQEAAEQKKELRSHWT 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+++HG LHLLGYDH+ D +A ME LE IL LG+ +PY+ Sbjct: 125 HMVVHGGLHLLGYDHIKDNEALEMESLEIEILAQLGVENPYQ 166 >gi|296103384|ref|YP_003613530.1| putative metalloprotease [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057843|gb|ADF62581.1| putative metalloprotease [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295096598|emb|CBK85688.1| conserved hypothetical protein TIGR00043 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 155 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 89/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E+ E E F K + +I + F +E+ V + LV D L Sbjct: 6 LDLQLACEDNSGMPE-------EAQFQKWLDAVIPQ--FQEESEVTIRLV--DEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAKEQQKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYEDPY 150 >gi|145630707|ref|ZP_01786486.1| hypothetical protein CGSHi22421_02154 [Haemophilus influenzae R3021] gi|144983833|gb|EDJ91283.1| hypothetical protein CGSHi22421_02154 [Haemophilus influenzae R3021] Length = 154 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN I E + A + +G N VE+++ D + L Sbjct: 6 VDLQIATEN------IEGLPTEEQIVQWATGAVQPEG-----NEVEMTVRIVDEAESQEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG +DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPY 150 >gi|308186035|ref|YP_003930166.1| metalloprotease [Pantoea vagans C9-1] gi|308056545|gb|ADO08717.1| Putative metalloprotease [Pantoea vagans C9-1] Length = 157 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 15/159 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A +N A DE F + +S ++ F E+ V + LV D Sbjct: 6 LDLQVACDNTADLPDEGQ--------FHRWLSAAVTP--FQPESEVTVRLV--DEAESHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAAEQGKSVEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A MEGLE I+ LG DPY Sbjct: 112 VVHGTLHLLGYDHIEDDEADEMEGLETEIMLALGYPDPY 150 >gi|149186038|ref|ZP_01864352.1| predicted metal-dependent hydrolase [Erythrobacter sp. SD-21] gi|148830069|gb|EDL48506.1| predicted metal-dependent hydrolase [Erythrobacter sp. SD-21] Length = 161 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 64/143 (44%), Positives = 81/143 (56%), Gaps = 8/143 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---- 88 EV+ KA + + + + SL+FT ++ LN E+RG DKPTNVLSFP Sbjct: 17 EVISQKAYEAIAQVEFALAHPRLTTSLLFTSEEQVHELNKEWRGKDKPTNVLSFPMLERV 76 Query: 89 --AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-D 145 +DG MLGDI LA+E + EA+ G +H HL+IHGFLHL G+DHVD D Sbjct: 77 DLIALEADGPPE-MLGDIALAFETCQREADEKGVSVRDHTAHLLIHGFLHLAGHDHVDSD 135 Query: 146 KDACVMEGLERSILEDLGINDPY 168 + A ME LE L LGI DPY Sbjct: 136 EQAAAMEKLEIEALAKLGIADPY 158 >gi|290476184|ref|YP_003469084.1| putative metal-dependent hydrolase [Xenorhabdus bovienii SS-2004] gi|289175517|emb|CBJ82320.1| putative metal-dependent hydrolase [Xenorhabdus bovienii SS-2004] Length = 155 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA EN + E +F + + +++ + F E+ V + LV D L Sbjct: 6 LDLQIACENPEGLPD-------EALFQRWLESILPQ--FQAESEVTIRLV--DEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAEEQQKTVEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH++D +A ME LE IL+ +G DPY Sbjct: 113 IHGSLHLLGYDHIEDDEAEEMESLETEILQKMGYADPY 150 >gi|253990621|ref|YP_003041977.1| metalloprotease [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782071|emb|CAQ85235.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 155 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV-FTDSHRIET 69 LDLQIA EN+ E E +F + + ++ + F E+ V + +V T+SH Sbjct: 6 LDLQIACENSQNLPE-------ETLFQRWLDGVLPQ--FQPESEVTIRIVDETESH---D 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPEVDLPLLGDLIICRQVVEKEAEEQQKTVEEHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH+ D +A ME LE I++ LG +DPY Sbjct: 112 VVHGCLHLLGYDHIADDEAEEMESLETEIMQKLGYSDPY 150 >gi|117617448|ref|YP_857734.1| hypothetical protein AHA_3243 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|145558811|sp|A0KN83|RRMF_AERHH RecName: Full=Probable rRNA maturation factor gi|117558855|gb|ABK35803.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 154 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG DKPTNVLSFP F + G +LGD+V+ +++E E Sbjct: 38 AEVTVRIVDEAESNELNLTYRGKDKPTNVLSFP--FEAPPGLELPLLGDLVICRQVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK H H+++HG LHLLGYDH++D +A ME LER I+++LG DPY Sbjct: 96 AAEQGKPLMAHWAHMVVHGSLHLLGYDHIEDDEAEEMETLERDIMQELGFADPY 149 >gi|261343535|ref|ZP_05971180.1| putative metalloprotease [Providencia rustigianii DSM 4541] gi|282568684|gb|EFB74219.1| putative metalloprotease [Providencia rustigianii DSM 4541] Length = 155 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENALWGDEIHLRTL-CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA EN + L E +F V+ ++ K F E+ E+++ D Sbjct: 6 LDLQIASEN--------IEGLPSEAMFQHWVNAVLPK--FQAES--EVTIRIVDEAESHD 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLIICRQVVEKEATEQQKSEEEHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A MEGLE IL ++G DPY Sbjct: 112 VVHGCLHLLGYDHIEDDEAEEMEGLETEILAEMGYADPY 150 >gi|159043564|ref|YP_001532358.1| hypothetical protein Dshi_1015 [Dinoroseobacter shibae DFL 12] gi|189038542|sp|A8LSE3|RRMF_DINSH RecName: Full=Probable rRNA maturation factor gi|157911324|gb|ABV92757.1| protein of unknown function UPF0054 [Dinoroseobacter shibae DFL 12] Length = 181 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 70/182 (38%), Positives = 95/182 (52%), Gaps = 20/182 (10%) Query: 2 SVKKVNLPRLDLQIAVENALWGDEIHLRTLC-EVVFAKAVSNLISKGYFVKENIVELSLV 60 +++ + R ++IA E+A W D + L L V A V+ + F E+S++ Sbjct: 4 TIRPDDPARATVEIATEDAAW-DALDLEALAGRAVDATLVALDLPPAAF------EVSIL 56 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLM---------LGDIVLAY 108 D RI TLN E+RG PTNVLS+P + D G L LGD+ LA+ Sbjct: 57 ACDDARIATLNGEFRGKPTPTNVLSWPAEDRAPDTPGGAPHLPDPGDPMAAELGDLALAH 116 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK +H+ HLI+HG LHLLG+DH D DA MEGLE IL+ L + +PY Sbjct: 117 GTCAREAAEAGKPLADHVTHLIVHGTLHLLGFDHETDADAARMEGLEVKILQTLNMANPY 176 Query: 169 EV 170 E Sbjct: 177 ET 178 >gi|103487640|ref|YP_617201.1| hypothetical protein Sala_2159 [Sphingopyxis alaskensis RB2256] gi|123078201|sp|Q1GR54|RRMF_SPHAL RecName: Full=Probable rRNA maturation factor gi|98977717|gb|ABF53868.1| protein of unknown function UPF0054 [Sphingopyxis alaskensis RB2256] Length = 168 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 59/122 (48%), Positives = 75/122 (61%), Gaps = 8/122 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIVL 106 +VE+++ TD + TLN ++RG DKPTNVLSFP + A+SD ++LGDIVL Sbjct: 44 LVEVAVRLTDDAEVHTLNRDFRGRDKPTNVLSFPQVQNDLLESLANSDD-GEILLGDIVL 102 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 A E EA+ G H HLI+HG LHL+GYDH+DD A ME LE L LGI + Sbjct: 103 ARETCAREADEKGVSLAAHATHLIVHGALHLVGYDHMDDVSAAAMEALEVKALASLGIAN 162 Query: 167 PY 168 PY Sbjct: 163 PY 164 >gi|86148577|ref|ZP_01066862.1| hypothetical protein MED222_02087 [Vibrio sp. MED222] gi|85833643|gb|EAQ51816.1| hypothetical protein MED222_02087 [Vibrio sp. MED222] Length = 153 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L T + + + K + EL++ D+ Sbjct: 4 ELDLQLAVEN-----EQGLPT------EQDIQLWLDKTIPQFQESAELTVRIVDTQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEAPPGVELDLLGDLIICRQVVEKEAEEQSKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQTMGFEDPY 149 >gi|307545981|ref|YP_003898460.1| hypothetical protein HELO_3391 [Halomonas elongata DSM 2581] gi|307218005|emb|CBV43275.1| K07042 [Halomonas elongata DSM 2581] Length = 171 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 54/113 (47%), Positives = 74/113 (65%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ F D+ LN +YR D+PTNVLSFP F S + +LGD+V+ + ++ EA Sbjct: 42 ELTIRFVDAEESRHLNRDYRDRDRPTNVLSFP--FESPPTVALPLLGDLVICHPVVVDEA 99 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H H+++HG LHLLGYDH++D +A VME LER IL +LGI DPY Sbjct: 100 ETQHKSLLDHYAHMVVHGTLHLLGYDHIEDDEAEVMEALEREILAELGIADPY 152 >gi|332288753|ref|YP_004419605.1| putative metalloprotease [Gallibacterium anatis UMN179] gi|330431649|gb|AEC16708.1| putative metalloprotease [Gallibacterium anatis UMN179] Length = 158 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA E D+ +L TL + + ++ +++ VE+++ D L Sbjct: 9 VDLQIASE-----DQSNLPTLQQFTY------WATQAVKPQQDNVEMTIRIVDEEESHHL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 NF YRG D+PTNVLSFP F +G + +LGD+V+ +++E EA E H HL Sbjct: 58 NFTYRGKDRPTNVLSFP--FEVPEGIALPLLGDLVICRQVVEKEAQEQQISLEAHYAHLT 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ +G DPY Sbjct: 116 VHGCLHLLGYDHIEDDEAEEMENLETEIMLSMGYADPY 153 >gi|37197841|dbj|BAC93679.1| predicted metal-dependent hydrolase [Vibrio vulnificus YJ016] Length = 250 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+AVE D+ L + A+ + K + E+++ DS L Sbjct: 101 LDLQLAVE-----DQNGLPS------AQDFQTWLDKTIPPFQPQAEVTIRIVDSQESHQL 149 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K H H++ Sbjct: 150 NHDYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEQEAIEQDKPLMAHWAHMV 207 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 208 VHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPY 245 >gi|311280445|ref|YP_003942676.1| hypothetical protein Entcl_3146 [Enterobacter cloacae SCF1] gi|308749640|gb|ADO49392.1| protein of unknown function UPF0054 [Enterobacter cloacae SCF1] Length = 155 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A EN E L E F + + +I + F +E+ V + LV D L Sbjct: 6 LDLQLACEN-----EAGLPQ--EAQFQRWLDAVIPQ--FQEESEVTVRLV--DDAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DK TNVLSFP F + G +LGD+++ +++E EA GK E H H++ Sbjct: 55 NLTYRGKDKSTNVLSFP--FEAPPGMEMPLLGDLIICRQVVEREAEEQGKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG +DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYDDPY 150 >gi|16271980|ref|NP_438177.1| putative metalloprotease [Haemophilus influenzae Rd KW20] gi|145636793|ref|ZP_01792459.1| hypothetical protein CGSHiHH_06750 [Haemophilus influenzae PittHH] gi|145641868|ref|ZP_01797443.1| hypothetical protein CGSHiR3021_01322 [Haemophilus influenzae R3021] gi|260580692|ref|ZP_05848519.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|2495567|sp|P71335|RRMF_HAEIN RecName: Full=Probable rRNA maturation factor gi|60593985|pdb|1XAX|A Chain A, Nmr Structure Of Hi0004, A Putative Essential Gene Product From Haemophilus Influenzae gi|1572948|gb|AAC21683.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|145270091|gb|EDK10028.1| hypothetical protein CGSHiHH_06750 [Haemophilus influenzae PittHH] gi|145273490|gb|EDK13361.1| hypothetical protein CGSHiR3021_01322 [Haemophilus influenzae 22.4-21] gi|260092754|gb|EEW76690.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 154 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN I E + A + +G N VE+++ D L Sbjct: 6 VDLQIATEN------IEGLPTEEQIVQWATGAVQPEG-----NEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA+ K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREASEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG +DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPY 150 >gi|307256716|ref|ZP_07538495.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261160|ref|ZP_07542836.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306864764|gb|EFM96668.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869142|gb|EFN00943.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 163 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ ++ E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLAQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DK TNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESHELNLTYRGKDKSTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDVEAEEMEGLETEIMQSLGFEDPY 155 >gi|126666979|ref|ZP_01737955.1| predicted metal-dependent hydrolase [Marinobacter sp. ELB17] gi|126628695|gb|EAZ99316.1| predicted metal-dependent hydrolase [Marinobacter sp. ELB17] Length = 158 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N LDLQ+ + A E R ++ + + E+++ D Sbjct: 1 MNFVTLDLQLVSDAANIPSEDQFRQWSQLAWQG-------------DEPTEVTIRIVDES 47 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++ LNF+YRG DKPTNVLSFP F + G L+ GD+V+ I+ EA K+ H Sbjct: 48 EMQALNFQYRGKDKPTNVLSFP--FEAPAGIQILLAGDLVICAPIVAQEAREQYKDTHAH 105 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+IIHG LHL YDH+DD +A MEGLE +L +GI +PY+ Sbjct: 106 WAHMIIHGMLHLQSYDHIDDNEAEEMEGLEIRLLAQIGITNPYD 149 >gi|90420540|ref|ZP_01228447.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90335268|gb|EAS49021.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 203 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 88/160 (55%), Gaps = 6/160 (3%) Query: 11 LDLQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 L + + VE+ W D + + F+ A + L G V E +SL D + Sbjct: 18 LTVALTVEDPRWDDAGLGDIPAMAAETFSVAAARLGLPGDLVSE----ISLTLADDETVR 73 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+R DKPTN+LSFP A + +LGD+++A+E + EA+ K F +H H Sbjct: 74 AVNAEWRNKDKPTNILSFPMADLAPGERPGPLLGDLLVAFETVAREADEEAKAFADHFRH 133 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L++HGFLHL+G DH+ D +A ME E +IL + GI DPY Sbjct: 134 LLVHGFLHLMGLDHMVDTEADDMEAAEIAILAEFGIADPY 173 >gi|296447883|ref|ZP_06889794.1| protein of unknown function UPF0054 [Methylosinus trichosporium OB3b] gi|296254624|gb|EFH01740.1| protein of unknown function UPF0054 [Methylosinus trichosporium OB3b] Length = 168 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 73/161 (45%), Positives = 93/161 (57%), Gaps = 9/161 (5%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P +D I V W + L L + V+ ++ ++ ELS+ FTD I Sbjct: 3 PSID--IIVTAPCWEQQTGLDELTQSTVRGCVA--VTAARLAQD--CELSVNFTDDATIR 56 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN ++RGIDKPTNVLSF T + L LGDIV+A+E + EA+ GK FE HL H Sbjct: 57 ELNAQWRGIDKPTNVLSFETPGPLA---RRLSLGDIVIAHETVAREADEQGKSFEAHLTH 113 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LIIHGFLHL+GYDH ++A ME LER I LG+ DPYE Sbjct: 114 LIIHGFLHLIGYDHQAAREAEEMEALERRIAATLGLADPYE 154 >gi|301168606|emb|CBW28195.1| conserved protein [Haemophilus influenzae 10810] Length = 154 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN I E + A + + +G N VE+++ D L Sbjct: 6 VDLQIATEN------IEGLPTEEQIVQWATAAIQPEG-----NEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG +DPY Sbjct: 113 VHGCLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPY 150 >gi|320539650|ref|ZP_08039314.1| putative conserved protein [Serratia symbiotica str. Tucson] gi|320030262|gb|EFW12277.1| putative conserved protein [Serratia symbiotica str. Tucson] Length = 157 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 88/159 (55%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E++ DE + E V + F +E V + LV D Sbjct: 6 LDLQIACEDSNNLPDETAFQRWLEAVLLQ----------FQEEAEVTVRLV--DEAESNE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G + +LGD+++ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPGIALPLLGDLIICRQVVEQEAAEQGKTSEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDAAEEMESLETEIMHGLGYPDPY 150 >gi|145629144|ref|ZP_01784943.1| hypothetical protein CGSHi22121_10090 [Haemophilus influenzae 22.1-21] gi|145633443|ref|ZP_01789173.1| hypothetical protein CGSHi3655_04405 [Haemophilus influenzae 3655] gi|145639708|ref|ZP_01795311.1| hypothetical protein CGSHiII_09331 [Haemophilus influenzae PittII] gi|148825715|ref|YP_001290468.1| putative metalloprotease [Haemophilus influenzae PittEE] gi|166229102|sp|A5UBD4|RRMF_HAEIE RecName: Full=Probable rRNA maturation factor gi|144978647|gb|EDJ88370.1| hypothetical protein CGSHi22121_10090 [Haemophilus influenzae 22.1-21] gi|144986006|gb|EDJ92608.1| hypothetical protein CGSHi3655_04405 [Haemophilus influenzae 3655] gi|145271265|gb|EDK11179.1| hypothetical protein CGSHiII_09331 [Haemophilus influenzae PittII] gi|148715875|gb|ABQ98085.1| hypothetical protein CGSHiEE_03300 [Haemophilus influenzae PittEE] gi|309750677|gb|ADO80661.1| Conserved hypothetical protein [Haemophilus influenzae R2866] Length = 154 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN I E + A + + +G N VE+++ D L Sbjct: 6 VDLQIATEN------IEGLPTEEQIVQWATAAIQPEG-----NEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG +DPY Sbjct: 113 VHGGLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPY 150 >gi|260582082|ref|ZP_05849877.1| metal-dependent hydrolase [Haemophilus influenzae NT127] gi|260094972|gb|EEW78865.1| metal-dependent hydrolase [Haemophilus influenzae NT127] Length = 154 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN I E + A + +G N VE+++ D + L Sbjct: 6 VDLQIATEN------IEGLPTEEQIVQWATGAVQPEG-----NEVEMTVRIVDEAESQEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFADPY 150 >gi|229525570|ref|ZP_04414975.1| hypothetical protein VCA_003202 [Vibrio cholerae bv. albensis VL426] gi|229339151|gb|EEO04168.1| hypothetical protein VCA_003202 [Vibrio cholerae bv. albensis VL426] Length = 154 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E FA + I+ F + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAE--FALWLIRTITP--FQPQ--AEVTIRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FETPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPY 149 >gi|50593431|gb|AAT79462.1| putative metal-dependent hydrolase [Agrobacterium luteum] Length = 186 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/121 (48%), Positives = 77/121 (63%), Gaps = 8/121 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIVLA 107 +E+S+ +D+ ++TLN YRG DKPTNVLSFP A++D +L LGDI+LA Sbjct: 63 IEVSVKLSDNAEVQTLNKAYRGKDKPTNVLSFPQIQPDLLDTLANTDDGEAL-LGDIILA 121 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 YE EA F +H+ HLI+HG LHLLGYDH ++ DA VME E + L LGI +P Sbjct: 122 YETCRDEAVAKDISFSSHITHLIVHGSLHLLGYDHENEVDAGVMENCEINALATLGIANP 181 Query: 168 Y 168 Y Sbjct: 182 Y 182 >gi|119386401|ref|YP_917456.1| hypothetical protein Pden_3693 [Paracoccus denitrificans PD1222] gi|145558815|sp|A1B8B6|RRMF_PARDP RecName: Full=Probable rRNA maturation factor gi|119376996|gb|ABL71760.1| protein of unknown function UPF0054 [Paracoccus denitrificans PD1222] Length = 174 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 87/163 (53%), Gaps = 15/163 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E+ W D L + E A+AV + F ++ ++ D RI LN Sbjct: 15 VDIVLEDDRWED-ADLPAMAERA-ARAVGEWLGLDAF------QVVVMGCDDARIAALNA 66 Query: 73 EYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 E+RG KPTNVLS+P A + + LGDI ++Y+ EA GK F +H Sbjct: 67 EFRGKPKPTNVLSWPAVEFEAREPGAHPEPPGAEELGDIAISYDTCLREAEAQGKPFADH 126 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++H LHL GYDH+DD+DA ME ERSIL LGI DPY Sbjct: 127 ATHLLVHAMLHLAGYDHIDDEDAETMEDAERSILGKLGIPDPY 169 >gi|229845426|ref|ZP_04465556.1| putative metalloprotease [Haemophilus influenzae 6P18H1] gi|319896426|ref|YP_004134619.1| hypothetical protein HIBPF00040 [Haemophilus influenzae F3031] gi|229811622|gb|EEP47321.1| putative metalloprotease [Haemophilus influenzae 6P18H1] gi|317431928|emb|CBY80274.1| conserved protein [Haemophilus influenzae F3031] Length = 154 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN I E + A + +G N VE+++ D L Sbjct: 6 VDLQIATEN------IEGLPTEEQIVQWATGAVQPEG-----NEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG +DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPY 150 >gi|148981400|ref|ZP_01816396.1| hypothetical protein VSWAT3_09548 [Vibrionales bacterium SWAT-3] gi|145960892|gb|EDK26222.1| hypothetical protein VSWAT3_09548 [Vibrionales bacterium SWAT-3] Length = 153 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L T ++ + K + EL++ D+ Sbjct: 4 ELDLQLAVEN-----EQGLPTEHDIQL------WLDKTIPQFQKSAELTIRIVDTEESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP F + G LGD+++ +++E EA K H H+ Sbjct: 53 LNHEYRGKDKPTNVLSFP--FEAPPGIELDFLGDLIICRQVVEKEAEEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQAMGFEDPY 149 >gi|323499964|ref|ZP_08104922.1| metal-binding heat shock protein [Vibrio sinaloensis DSM 21326] gi|323314981|gb|EGA68034.1| metal-binding heat shock protein [Vibrio sinaloensis DSM 21326] Length = 155 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 90/161 (55%), Gaps = 17/161 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEV--VFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 LDLQ+AVE DE L T ++ AV+ + E+++ D Sbjct: 4 ELDLQLAVE-----DESGLPTFDDIHLWLNSAVAKFQPQA--------EVTVRLVDEQES 50 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LNF+YRG DKPTNVLSFP F + G +LGD+++ +++E EA K H Sbjct: 51 HQLNFDYRGKDKPTNVLSFP--FEAPPGIEMDLLGDLIICRQVVEREAIEQQKPLMAHWA 108 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+++HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 109 HMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFLDPY 149 >gi|283834042|ref|ZP_06353783.1| putative metalloprotease YbeY [Citrobacter youngae ATCC 29220] gi|291070183|gb|EFE08292.1| putative metalloprotease YbeY [Citrobacter youngae ATCC 29220] Length = 157 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 90/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E DE L T E F + +I + F +E+ V + LV D L Sbjct: 6 LDLQLACE-----DESGLPT--ESQFQGWLDAVIPQ--FQEESEVTIRLV--DDAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DK TNVLSFP F + G +LGD+++ +++E EA GK E H H++ Sbjct: 55 NLTYRGKDKSTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEKEAQEQGKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYEDPY 150 >gi|229047214|ref|NP_933708.2| putative metalloprotease [Vibrio vulnificus YJ016] gi|46577353|sp|Q7MN02|RRMF_VIBVY RecName: Full=Probable rRNA maturation factor Length = 154 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE D+ L + A+ + K + E+++ DS Sbjct: 4 ELDLQLAVE-----DQNGLPS------AQDFQTWLDKTIPPFQPQAEVTIRIVDSQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEQEAIEQDKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPY 149 >gi|192288881|ref|YP_001989486.1| hypothetical protein Rpal_0450 [Rhodopseudomonas palustris TIE-1] gi|192282630|gb|ACE99010.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris TIE-1] Length = 167 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/116 (52%), Positives = 76/116 (65%), Gaps = 3/116 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--SSDGCSSLMLGDIVLAYEIIE 112 EL+++ TD I LN +R DKPTNVLSFP A DG MLGDI +AY+ + Sbjct: 46 AELAVMLTDDDHIRQLNASFRDKDKPTNVLSFPAAQPEVQPDGAPR-MLGDIAIAYQTVR 104 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ GK F++HL HL +HGFLHL+GYDH D++A ME ER+IL LGI DPY Sbjct: 105 READDEGKPFDHHLSHLAVHGFLHLVGYDHETDEEAEEMEDAERAILARLGIPDPY 160 >gi|254361290|ref|ZP_04977433.1| possible metal-dependent hydrolase [Mannheimia haemolytica PHL213] gi|261493920|ref|ZP_05990429.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496864|ref|ZP_05993233.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092786|gb|EDN73829.1| possible metal-dependent hydrolase [Mannheimia haemolytica PHL213] gi|261307481|gb|EEY08815.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310423|gb|EEY11617.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 160 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENA--LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 +DLQIA EN L ++ + + + +A ++ + E+++ D Sbjct: 6 IDLQIACENTENLPSEQQFYTWVQKALAVEAKTDDFPES--------EITIRIVDEAESH 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP F + +G +LGD+V+ +++E EA G E+H H Sbjct: 58 ELNLTYRGKDKPTNVLSFP--FEAPEGIEMPLLGDLVICRQVMEKEAEEQGISAESHWAH 115 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L IHG LHLLGYDH+++ +A ME LE I++ LG DPY Sbjct: 116 LAIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPY 155 >gi|320157149|ref|YP_004189528.1| metal-dependent hydrolase [Vibrio vulnificus MO6-24/O] gi|319932461|gb|ADV87325.1| metal-dependent hydrolase [Vibrio vulnificus MO6-24/O] Length = 154 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE D+ L + A+ + K + E+++ DS Sbjct: 4 ELDLQLAVE-----DQNGLPS------AQDFQTWLDKTIPPFQPQAEVTIRIVDSQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEQEAIEQDKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPY 149 >gi|68248555|ref|YP_247667.1| putative metalloprotease [Haemophilus influenzae 86-028NP] gi|148827164|ref|YP_001291917.1| putative metalloprotease [Haemophilus influenzae PittGG] gi|81337018|sp|Q4QPP0|RRMF_HAEI8 RecName: Full=Probable rRNA maturation factor gi|166228383|sp|A5UFH8|RRMF_HAEIG RecName: Full=Probable rRNA maturation factor gi|68056754|gb|AAX87007.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP] gi|148718406|gb|ABQ99533.1| hypothetical protein CGSHiGG_02480 [Haemophilus influenzae PittGG] gi|309972862|gb|ADO96063.1| Conserved hypothetical protein [Haemophilus influenzae R2846] Length = 154 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN I E + A + +G N VE+++ D L Sbjct: 6 VDLQIATEN------IEGLPTEEQIVQWATGAVQPEG-----NEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG +DPY Sbjct: 113 VHGCLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPY 150 >gi|27363747|ref|NP_759275.1| metal-binding heat shock protein [Vibrio vulnificus CMCP6] gi|29428187|sp|Q8DFE6|RRMF_VIBVU RecName: Full=Probable rRNA maturation factor gi|27359863|gb|AAO08802.1| predicted metal-dependent hydrolase [Vibrio vulnificus CMCP6] Length = 154 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE D+ L + A+ + K + E+++ DS Sbjct: 4 ELDLQLAVE-----DQNGLPS------AQDFQTWLDKTIPPFQPQAEVTIRIVDSQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEQEAIDQDKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPY 149 >gi|33152458|ref|NP_873811.1| putative metalloprotease [Haemophilus ducreyi 35000HP] gi|46577397|sp|Q7VLN5|RRMF_HAEDU RecName: Full=Probable rRNA maturation factor gi|33148681|gb|AAP96200.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 158 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 18/165 (10%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN-----IVELSLVFTD 63 P +DLQIA EN+ + A+ S+ + + + EL++ D Sbjct: 3 PIIDLQIASENS-----------QGLPSAQQFSDWVKHALTYEAQTSNIPLTELTIRIVD 51 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN YRG DKPTNVLSFP F +G +LGD+++ +I+E EA + Sbjct: 52 EAESHHLNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRQIVEKEALEQKISLD 109 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH+D+ +A MEGLE I++ LG DPY Sbjct: 110 AHWAHLTIHGTLHLLGYDHIDEHEAEQMEGLESDIMQQLGFQDPY 154 >gi|268590391|ref|ZP_06124612.1| putative metalloprotease [Providencia rettgeri DSM 1131] gi|291314304|gb|EFE54757.1| putative metalloprotease [Providencia rettgeri DSM 1131] Length = 155 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA EN E F + ++ ++ K + + E+++ D L Sbjct: 6 LDLQIACENPN-------GLPSEAEFQRWLAAVLPKF----QALSEVTIRVVDEQESHHL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQEAIDQQKTAEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A MEGLE IL +LG DPY Sbjct: 113 VHGCLHLLGYDHIEDDEAEEMEGLETEILAELGYEDPY 150 >gi|323259260|gb|EGA42903.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 146 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 58/136 (42%), Positives = 79/136 (58%), Gaps = 6/136 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + +I + F +E V + LV D LN YRG DKPTNVLSFP F + Sbjct: 10 EAQFQRWLDGVIPQ--FQEEAEVTIRLV--DEAESHDLNLTYRGKDKPTNVLSFP--FEA 63 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 G +LGD+++ +++E EA K E H H+++HG LHLLGYDH+DD +A ME Sbjct: 64 PPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHGSLHLLGYDHIDDDEAEEME 123 Query: 153 GLERSILEDLGINDPY 168 LE I+ +G DPY Sbjct: 124 SLETEIMLAMGYEDPY 139 >gi|237730636|ref|ZP_04561117.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226906175|gb|EEH92093.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 155 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 90/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E DE L T E F + +I + F +E+ V + LV D L Sbjct: 6 LDLQLACE-----DESGLPT--ESQFQGWLDAVIPQ--FQEESEVTIRLV--DDAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DK TNVLSFP F + G +LGD+++ +++E EA GK E H H++ Sbjct: 55 NLTYRGKDKSTNVLSFP--FEAPPGIEMSLLGDLIICRQVVEKEAQEQGKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYEDPY 150 >gi|157369460|ref|YP_001477449.1| hypothetical protein Spro_1217 [Serratia proteamaculans 568] gi|166977828|sp|A8GB31|RRMF_SERP5 RecName: Full=Probable rRNA maturation factor gi|157321224|gb|ABV40321.1| protein of unknown function UPF0054 [Serratia proteamaculans 568] Length = 157 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 88/159 (55%), Gaps = 15/159 (9%) Query: 11 LDLQIA-VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A +N+ DE + E V + F +E V + LV D Sbjct: 6 LDLQLACADNSGLPDEATFQRWLEGVLPQ----------FQEEAEVTIRLV--DEAESNE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG+DKPTNVLSFP F + G +LGD+++ +++E EA K E H H+ Sbjct: 54 LNLTYRGMDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEREAAEQDKALEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMESLETEIMHGLGYPDPY 150 >gi|114561894|ref|YP_749407.1| putative metalloprotease [Shewanella frigidimarina NCIMB 400] gi|122300720|sp|Q087J6|RRMF_SHEFN RecName: Full=Probable rRNA maturation factor gi|114333187|gb|ABI70569.1| protein of unknown function UPF0054 [Shewanella frigidimarina NCIMB 400] Length = 156 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/169 (39%), Positives = 94/169 (55%), Gaps = 15/169 (8%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 MS + ++L LDLQIAV+N R + F V I + + +VEL++ Sbjct: 1 MSQQGISL-DLDLQIAVDNP--------RLPTQAEFETWVRAAIGQ----TKPVVELTIR 47 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D + LN YRG DKPTNVLSFP F + +LGD+V+ ++E EA K Sbjct: 48 IVDIAESQQLNSTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLVICAPVVEQEAIEQNK 105 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H H++IHG LHLLGYDH+ D++A ME LE ++E LG ++PY+ Sbjct: 106 PLIAHWAHMVIHGSLHLLGYDHIIDEEADEMESLETQLVEGLGFDNPYK 154 >gi|84394392|ref|ZP_00993111.1| hypothetical protein V12B01_09906 [Vibrio splendidus 12B01] gi|84374994|gb|EAP91922.1| hypothetical protein V12B01_09906 [Vibrio splendidus 12B01] Length = 153 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIAVEN E L T + + + K + EL++ D+ Sbjct: 4 ELDLQIAVEN-----EQGLPT------EQDIQLWLDKTIPQFQENAELTVRIVDTEESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEVPPGMELDLLGDLIICRQVVEKEAEEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQTMGFEDPY 149 >gi|83595101|ref|YP_428853.1| hypothetical protein Rru_A3772 [Rhodospirillum rubrum ATCC 11170] gi|123525364|sp|Q2RMS9|RRMF_RHORT RecName: Full=Probable rRNA maturation factor gi|83578015|gb|ABC24566.1| Protein of unknown function UPF0054 [Rhodospirillum rubrum ATCC 11170] Length = 200 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/144 (44%), Positives = 84/144 (58%), Gaps = 6/144 (4%) Query: 30 TLCEVVFAKAVSNLISKGY-FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L E AV+ GY +E+SL+ TD ++ LN +YRG DKPTNVLSF Sbjct: 45 ALVEQAVLAAVAAGDPSGYGLTPGTPLEISLLLTDDAAVQALNRDYRGQDKPTNVLSFAA 104 Query: 89 AFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 A DG ++LGD+ LA E + EA LG +H+ HL++HG LHLLGYDH + Sbjct: 105 LDAEEPLPEDG-EPVLLGDVALARETVVREAADLGIAPADHVFHLVVHGVLHLLGYDHEE 163 Query: 145 DKDACVMEGLERSILEDLGINDPY 168 +++A MEGLE +IL GI DPY Sbjct: 164 EEEALDMEGLETAILGARGIADPY 187 >gi|229846922|ref|ZP_04467028.1| putative metalloprotease [Haemophilus influenzae 7P49H1] gi|229810006|gb|EEP45726.1| putative metalloprotease [Haemophilus influenzae 7P49H1] Length = 154 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN I E + A + +G N VE+++ D L Sbjct: 6 VDLQIATEN------IEGLPTEEQIVQWATGAVQPEG-----NEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAVEQDKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG +DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPY 150 >gi|319774955|ref|YP_004137443.1| hypothetical protein HICON_02870 [Haemophilus influenzae F3047] gi|329123148|ref|ZP_08251718.1| metal-dependent hydrolase [Haemophilus aegyptius ATCC 11116] gi|317449546|emb|CBY85750.1| conserved protein [Haemophilus influenzae F3047] gi|327471703|gb|EGF17145.1| metal-dependent hydrolase [Haemophilus aegyptius ATCC 11116] Length = 154 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN I E + A + +G N VE+++ D L Sbjct: 6 VDLQIATEN------IEGLPTEEQIVQWATVAIQPEG-----NEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG +DPY Sbjct: 113 VHGCLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPY 150 >gi|271499715|ref|YP_003332740.1| hypothetical protein Dd586_1151 [Dickeya dadantii Ech586] gi|270343270|gb|ACZ76035.1| protein of unknown function UPF0054 [Dickeya dadantii Ech586] Length = 161 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA EN+ E F + + ++ + F E E+++ D L Sbjct: 6 LDLQIASENSH-------GLPSEADFQRWLEAVLPQ--FQDE--AEVTIRVVDEEESHHL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E EA GK E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAVEQGKSEEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 113 VHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPY 150 >gi|39933523|ref|NP_945799.1| hypothetical protein RPA0446 [Rhodopseudomonas palustris CGA009] gi|59799039|sp|Q6NCM6|RRMF_RHOPA RecName: Full=Probable rRNA maturation factor gi|39647369|emb|CAE25890.1| Protein of unknown function UPF0054 [Rhodopseudomonas palustris CGA009] Length = 190 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 61/116 (52%), Positives = 78/116 (67%), Gaps = 3/116 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--SSDGCSSLMLGDIVLAYEIIE 112 EL+++ TD I LN +RG DKPTNVLSFP A DG + MLGDI +AY+ + Sbjct: 69 AELAVMLTDDDHIRQLNASFRGKDKPTNVLSFPAAQPEVQPDG-APRMLGDIAIAYQTVR 127 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ GK F++HL HL +HGFLHL+GYDH +++A ME ER+IL LGI DPY Sbjct: 128 READDEGKPFDHHLSHLAVHGFLHLVGYDHETEEEAEEMEDAERAILARLGIPDPY 183 >gi|288942384|ref|YP_003444624.1| hypothetical protein Alvin_2683 [Allochromatium vinosum DSM 180] gi|288897756|gb|ADC63592.1| protein of unknown function UPF0054 [Allochromatium vinosum DSM 180] Length = 178 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/164 (40%), Positives = 89/164 (54%), Gaps = 14/164 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E+A + L E A++ + + EL++ D + L Sbjct: 7 LDLQVATEDA----DHPLPPRFERWVRAALAQVDPPFQRAR---AELTIRLVDPDESQAL 59 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----MLGDIVLAYEIIEIEANVLGKEFENH 125 N +YRG DKPTNVLSFP F + G + +LGD+V+ E++ EA GK E H Sbjct: 60 NLQYRGRDKPTNVLSFP--FEAPPGLDADDPIHDLLGDLVICTEVVRREALEQGKTPEAH 117 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+++HG LHLL YDHV D +A VME LE +IL LG PYE Sbjct: 118 WAHMVVHGVLHLLDYDHVTDAEAAVMETLETAILGGLGFPPPYE 161 >gi|251791997|ref|YP_003006717.1| putative metalloprotease [Aggregatibacter aphrophilus NJ8700] gi|247533384|gb|ACS96630.1| putative metalloprotease in flp 5' region [Aggregatibacter aphrophilus NJ8700] Length = 154 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 85/158 (53%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA E E L T A+ + + + + VE+++ D L Sbjct: 6 IDLQIACEQ-----ETGLPT------AEQIEQWATVAVQPQTDEVEMTVRIVDEAESHAL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA GK H H++ Sbjct: 55 NLNYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAQEQGKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMIGLGFVDPY 150 >gi|326796265|ref|YP_004314085.1| metalloprotease ybeY [Marinomonas mediterranea MMB-1] gi|326547029|gb|ADZ92249.1| metalloprotease ybeY [Marinomonas mediterranea MMB-1] Length = 155 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D +TLN EYRG +KPTNVLSFP F DG +LGD+V+ +++E EA Sbjct: 41 EMTIRLVDEEESQTLNNEYRGKNKPTNVLSFP--FEVPDGVELPLLGDLVICRQVVEREA 98 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K+ +H H+++HG LHL GYDH+ D +A ME LE IL L I DPY Sbjct: 99 RDQKKDLNHHWCHMVVHGILHLRGYDHIKDDEAEEMEALETQILATLNIPDPY 151 >gi|110681055|ref|YP_684062.1| hypothetical protein RD1_3919 [Roseobacter denitrificans OCh 114] gi|122972520|sp|Q161G7|RRMF_ROSDO RecName: Full=Probable rRNA maturation factor gi|109457171|gb|ABG33376.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 166 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 18/172 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ I +E+ W + L L V +A+S+ ++ + E+S + D RI L Sbjct: 1 MDIDILIEDDRWA-AMDLDVLVRDVL-RAISDTLT----LDLAAAEVSYLACDDARIALL 54 Query: 71 NFEYRGIDKPTNVLSFPTA------------FASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N ++R TNVLS+P A + D +L LGD+ +AYE E EA L Sbjct: 55 NADFREKATATNVLSWPAADLAPVVAGAVPTTPTVDVTGALTLGDVAIAYETCEREAADL 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GK H+ HLI+HG LHLLGYDH+ D DA +M+G+E IL +G +DPY V Sbjct: 115 GKPLAEHVTHLIVHGTLHLLGYDHIRDSDAALMQGVEAKILGKMGFDDPYMV 166 >gi|152979599|ref|YP_001345228.1| putative metalloprotease [Actinobacillus succinogenes 130Z] gi|171704389|sp|A6VQP6|RRMF_ACTSZ RecName: Full=Probable rRNA maturation factor gi|150841322|gb|ABR75293.1| protein of unknown function UPF0054 [Actinobacillus succinogenes 130Z] Length = 156 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 2/116 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D LN YRG D+PTNVLSFP F + +LGD+V+ +++E EA Sbjct: 41 EITIRIVDEAESHDLNLTYRGKDRPTNVLSFP--FECPEEVELPLLGDLVICRQVVEREA 98 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK H H+++HG LHLLGYDH++D +A ME LE I+ +LG DPY D Sbjct: 99 EQQGKPLPAHWAHMVVHGCLHLLGYDHIEDDEAVEMESLETQIMTELGFEDPYSYD 154 >gi|91228824|ref|ZP_01262731.1| hypothetical protein V12G01_00175 [Vibrio alginolyticus 12G01] gi|269965465|ref|ZP_06179584.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91187629|gb|EAS73954.1| hypothetical protein V12G01_00175 [Vibrio alginolyticus 12G01] gi|269829944|gb|EEZ84174.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 154 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E + ++ L + K + + E+++ D Sbjct: 4 ELDLQLAVENE------------EGLPSQQDFQLWLDKTIPLFQPQAEVTIRIVDEQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H Sbjct: 52 TLNHEYRGKDKPTNVLSFP--FEAPPGMEIDLLGDLIICRQVVEKEAVEQSKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPY 149 >gi|259415656|ref|ZP_05739577.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259348886|gb|EEW60648.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 170 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/168 (41%), Positives = 91/168 (54%), Gaps = 18/168 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + +E+A W D L EV A ++ L + E+ E++++ D RI LN Sbjct: 3 LDVVIEDARW-DAAALNKQAEVAVAATLAYL----ELLDEDW-EVTVLGCDDARIADLNA 56 Query: 73 EYRGIDKPTNVLSFPT---AFASSDGCSS---------LMLGDIVLAYEIIEIEANVLGK 120 E+R KPTNVLS+P A A G + LGDI ++YE EA + K Sbjct: 57 EFREKPKPTNVLSWPAQELAAAQEGGQPAPPEVDFMGDAALGDIAISYETCMKEAEIAQK 116 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+H+ HL++HG LHLLGYDH+ D DA VME LE IL LGI DPY Sbjct: 117 PPEDHIRHLLVHGTLHLLGYDHIRDGDATVMETLEVGILGKLGIPDPY 164 >gi|114319557|ref|YP_741240.1| hypothetical protein Mlg_0396 [Alkalilimnicola ehrlichii MLHE-1] gi|122312505|sp|Q0ABN7|RRMF_ALHEH RecName: Full=Probable rRNA maturation factor gi|114225951|gb|ABI55750.1| protein of unknown function UPF0054 [Alkalilimnicola ehrlichii MLHE-1] Length = 166 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 79/141 (56%), Gaps = 6/141 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + VS ++ G L++ D LN +YRG D PTNVLSFP F + Sbjct: 28 EAAFRRWVSAALAAGGHT--GPAALAVRVVDKAEGRRLNHDYRGRDYPTNVLSFP--FEA 83 Query: 93 SDGCSSLM--LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 G + LGD+V+ ++E EA GK +H HL++HG LHLLGYDH ++A Sbjct: 84 PPGLDEPLPELGDLVICAPVVEREAREQGKPEADHWAHLVVHGVLHLLGYDHEAAEEAEA 143 Query: 151 MEGLERSILEDLGINDPYEVD 171 MEGLER IL LGI DPY +D Sbjct: 144 MEGLERRILAGLGIADPYRLD 164 >gi|127513853|ref|YP_001095050.1| putative metalloprotease [Shewanella loihica PV-4] gi|171855250|sp|A3QH43|RRMF_SHELP RecName: Full=Probable rRNA maturation factor gi|126639148|gb|ABO24791.1| protein of unknown function UPF0054 [Shewanella loihica PV-4] Length = 157 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A + +++ + E A+ N++ + E+++ D + L Sbjct: 11 LDLQVATQ----AEQLPSQEEFESWVRLALGNVMPEA--------EMTIRLVDEAESQQL 58 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F S +LGD+V+ ++E EA + GK H H++ Sbjct: 59 NHTYRGKDKPTNVLSFP--FESPPEVELPLLGDLVICVPVVEQEAEIQGKSLTAHWAHMV 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH+ D +A ME LE ++E LG +PY+ Sbjct: 117 VHGCLHLLGYDHIIDSEAEEMESLETQLIESLGFPNPYK 155 >gi|262394982|ref|YP_003286836.1| putative metal-dependent hydrolase [Vibrio sp. Ex25] gi|262338576|gb|ACY52371.1| predicted metal-dependent hydrolase [Vibrio sp. Ex25] Length = 154 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E + ++ L + K + + E+++ D Sbjct: 4 ELDLQLAVENE------------EGLPSQQDFQLWLDKTIPLFQPQAEVTIRIVDEQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H Sbjct: 52 TLNHEYRGKDKPTNVLSFP--FEAPPGMEIDLLGDLIICRQVVEKEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPY 149 >gi|170728027|ref|YP_001762053.1| putative metalloprotease [Shewanella woodyi ATCC 51908] gi|238688644|sp|B1KDV6|RRMF_SHEWM RecName: Full=Probable rRNA maturation factor gi|169813374|gb|ACA87958.1| protein of unknown function UPF0054 [Shewanella woodyi ATCC 51908] Length = 158 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA +N ++ + E+ A+ N +++ EL++ D+ + L Sbjct: 12 LDLQIATDN----KQLPTQQDFELWVRTALRNTMTEA--------ELTVRVVDAEESQAL 59 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ ++E EA K + H H++ Sbjct: 60 NSTYRGKDKPTNVLSFP--FEAPAEIELPLLGDLIICASVVEHEAIQQNKPLQAHWAHMV 117 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D +A ME +E ++E LG N+PY+ Sbjct: 118 VHGCLHLLGYDHINDIEAEEMESIETQLIESLGFNNPYK 156 >gi|89069598|ref|ZP_01156937.1| hypothetical protein OG2516_13526 [Oceanicola granulosus HTCC2516] gi|89044796|gb|EAR50896.1| hypothetical protein OG2516_13526 [Oceanicola granulosus HTCC2516] Length = 163 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 60/125 (48%), Positives = 75/125 (60%), Gaps = 9/125 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLM-------LGD 103 ++ E++L+ D RI LN ++RG PTNVLS+P+ A G + L LGD Sbjct: 37 DLYEVTLLGCDDARIAALNGDFRGKPAPTNVLSWPSEERGARIAGETPLPPEPTDPELGD 96 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I +AYE EA+ GK E H HLI+HG LHLLGYDH D DA +MEGLE IL LG Sbjct: 97 IAIAYETCAREASEAGKPLETHATHLIVHGTLHLLGYDHERDGDATLMEGLEVEILGKLG 156 Query: 164 INDPY 168 + DPY Sbjct: 157 LPDPY 161 >gi|254509288|ref|ZP_05121380.1| putative metalloprotease [Vibrio parahaemolyticus 16] gi|219547776|gb|EED24809.1| putative metalloprotease [Vibrio parahaemolyticus 16] Length = 154 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL++ D LN EYRG DKPTNVLSFP F G +LGD+++ +++E E Sbjct: 38 AELTIRIVDEEESHQLNHEYRGKDKPTNVLSFP--FEVPPGIEINLLGDLIICKQVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K H H+++HG LHLLGYDH++D +A ME LE I++++G DPY Sbjct: 96 AQEQNKPLLAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFEDPY 149 >gi|91792174|ref|YP_561825.1| putative metalloprotease [Shewanella denitrificans OS217] gi|123061206|sp|Q12R24|RRMF_SHEDO RecName: Full=Probable rRNA maturation factor gi|91714176|gb|ABE54102.1| protein of unknown function UPF0054 [Shewanella denitrificans OS217] Length = 153 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 87/159 (54%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIAV++ + T + + EL++ + ++L Sbjct: 7 LDLQIAVDSNQLPSQADFETWVRTALGNTL------------DTAELTIRLVEIAESQSL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G +LGD+V+ ++E EA K + H H++ Sbjct: 55 NHDYRGKDKPTNVLSFP--FEAPPGMELPLLGDLVICVAVVEQEALEQNKPLQAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 IHG LHLLGYDH+ D++A ME LE ++E LG ++PY+ Sbjct: 113 IHGCLHLLGYDHIIDQEAEEMESLETQLIEGLGFSNPYK 151 >gi|330445219|ref|ZP_08308871.1| conserved protein involved in translation [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489410|dbj|GAA03368.1| conserved protein involved in translation [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 154 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN EYRG D+PTNVLSFP F + G +LGD+++ +++E E Sbjct: 38 AEVTIRLVDEADSHELNLEYRGKDRPTNVLSFP--FEAPPGIELELLGDLIICRQVVEKE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K + H H+++HG LHLLGYDH++D +A MEGLE I++++G DPY Sbjct: 96 ALEQNKPLKAHWAHMVVHGSLHLLGYDHIEDDEAEEMEGLETEIMQNMGFVDPY 149 >gi|167625136|ref|YP_001675430.1| putative metalloprotease [Shewanella halifaxensis HAW-EB4] gi|189039845|sp|B0TR40|RRMF_SHEHH RecName: Full=Probable rRNA maturation factor gi|167355158|gb|ABZ77771.1| protein of unknown function UPF0054 [Shewanella halifaxensis HAW-EB4] Length = 156 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/159 (40%), Positives = 90/159 (56%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIAVE G E+ + E+ A+ + +S+ EL++ D + L Sbjct: 10 LDLQIAVE----GFELPSQAELELWVKTALRDTMSEA--------ELTIRIVDVEESQEL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+V+ +++ EA K H H++ Sbjct: 58 NSTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLVICAAVVKQEAMDQNKPLIAHWAHMV 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH+DD +A ME LE ++E LG +PY+ Sbjct: 116 VHGCLHLLGYDHIDDSEAEEMESLETHLIESLGYINPYK 154 >gi|269469147|gb|EEZ80692.1| hypothetical protein Sup05_0085 [uncultured SUP05 cluster bacterium] Length = 146 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 2/103 (1%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ LN YR D+PTNVLSFP+ ++LGDIV+ I+ EA + K FE+HL Sbjct: 46 IQNLNKTYRDKDQPTNVLSFPSDLPIE--IDEMILGDIVICTSIVANEAKLQNKTFEHHL 103 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +H+ IHG LHLLGYDHV+ DA ME LE ILE + IN+PYE Sbjct: 104 IHMAIHGTLHLLGYDHVEPMDAQKMESLEIKILEKMQINNPYE 146 >gi|261822379|ref|YP_003260485.1| metalloprotease [Pectobacterium wasabiae WPP163] gi|261606392|gb|ACX88878.1| protein of unknown function UPF0054 [Pectobacterium wasabiae WPP163] Length = 159 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E A E E F + + ++ + + + E+++ D L Sbjct: 6 LDLQIASEQAQGLPE-------EKDFQRWLEGVLPQF----QEVSEVTIRIVDEAESRDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H++ Sbjct: 55 NNTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEREAAEQEKTVEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 113 VHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYTDPY 150 >gi|188534466|ref|YP_001908263.1| Conserved hypothetical protein (UPF0054) [Erwinia tasmaniensis Et1/99] gi|238689711|sp|B2VBL6|RRMF_ERWT9 RecName: Full=Probable rRNA maturation factor gi|188029508|emb|CAO97385.1| Conserved hypothetical protein (UPF0054) [Erwinia tasmaniensis Et1/99] Length = 155 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A EN E F + + ++ + F E+ V + LV D L Sbjct: 6 LDLQLACEN-------EQGLPAETDFQRWLEAVLPQ--FQPESEVTIRLV--DEAESREL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR DKPTNVLSFP F + G +LGD+++ +++E EA GK E H H++ Sbjct: 55 NHTYRSKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAVEQGKTREAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 IHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYPDPY 150 >gi|240139954|ref|YP_002964431.1| putative metalloprotease [Methylobacterium extorquens AM1] gi|240009928|gb|ACS41154.1| putative metalloprotease [Methylobacterium extorquens AM1] Length = 161 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 4/159 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAI---PELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQALN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A S + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPSQPGLARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYD 160 >gi|315634775|ref|ZP_07890057.1| metal-dependent hydrolase [Aggregatibacter segnis ATCC 33393] gi|315476327|gb|EFU67077.1| metal-dependent hydrolase [Aggregatibacter segnis ATCC 33393] Length = 154 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 84/158 (53%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA E E L T A+ + + + + VE+++ D L Sbjct: 6 IDLQIACEQ-----ESGLPT------AEQIEQWATAAVQPQSDEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLNYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAQEQDKPVMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLEAQIMTGLGFADPY 150 >gi|254562379|ref|YP_003069474.1| metalloprotease [Methylobacterium extorquens DM4] gi|254269657|emb|CAX25629.1| putative metalloprotease [Methylobacterium extorquens DM4] Length = 161 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 4/159 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAI---PELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQELN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A S + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPSQPGVARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYD 160 >gi|312882699|ref|ZP_07742436.1| putative metalloprotease [Vibrio caribbenthicus ATCC BAA-2122] gi|309369660|gb|EFP97175.1| putative metalloprotease [Vibrio caribbenthicus ATCC BAA-2122] Length = 154 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 96/158 (60%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIAVEN + L T +++ + + ++K F + E+++ D + L Sbjct: 5 LDLQIAVEN-----DKDLPTYEDILLW--LDSTLAK--FKPQ--AEVTVRVVDEPESQEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K +H H++ Sbjct: 54 NHDYRGKDKPTNVLSFP--FEAPPGIDIDLLGDLVICKQVVEREAIEQNKPLISHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D++A ME LE I++ +G +DPY Sbjct: 112 VHGCLHLLGYDHIEDQEAEEMESLETEIMKSMGYSDPY 149 >gi|120555651|ref|YP_960002.1| hypothetical protein Maqu_2740 [Marinobacter aquaeolei VT8] gi|145572774|sp|A1U496|RRMF_MARAV RecName: Full=Probable rRNA maturation factor gi|120325500|gb|ABM19815.1| protein of unknown function UPF0054 [Marinobacter aquaeolei VT8] Length = 157 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 15/161 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQ+A + G + +TL E +A+A + EN E+++ D+ L Sbjct: 6 VDLQMAFD----GTGVPSKTLFEA-WAEAA--------WQGENPTEVTIRIVDNDESREL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G + + GD+V+ ++E EA K+ H H++ Sbjct: 53 NHQYRGKDKPTNVLSFP--FEAPAGITVPLAGDLVICAPVVEQEAREQNKDAVAHWAHMV 110 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHL GYDH++ +A VME LE +L LG +PYE + Sbjct: 111 VHGMLHLQGYDHIEVNEAEVMEALEIRLLAQLGFANPYEAE 151 >gi|85058787|ref|YP_454489.1| hypothetical protein SG0809 [Sodalis glossinidius str. 'morsitans'] gi|123519813|sp|Q2NUU1|RRMF_SODGM RecName: Full=Probable rRNA maturation factor gi|84779307|dbj|BAE74084.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 156 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + E+++ D LN YRG D+PTNVLSFP F + +LGD+V+ ++++E Sbjct: 37 DCAEVTVRLVDEAESHELNMTYRGKDRPTNVLSFP--FEAPPEVELPLLGDLVICHQVVE 94 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K E H H+++HG LHLLGYDH+ D++A ME LE I++ LG DPY Sbjct: 95 REAQQQEKALEAHWAHMVVHGSLHLLGYDHIQDEEALEMESLETEIMQKLGYPDPY 150 >gi|307130058|ref|YP_003882074.1| hypothetical protein Dda3937_02469 [Dickeya dadantii 3937] gi|306527587|gb|ADM97517.1| conserved protein [Dickeya dadantii 3937] Length = 161 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 85/159 (53%), Gaps = 15/159 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA EN + E + E V + + + E+++ D Sbjct: 6 LDLQIASENNSGLPSEADFQRWLEAVLPQF------------QEVAEVTIRVVDEEESHH 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR DKPTNVLSFP F + +LGD+++ +++E EA GK E H H+ Sbjct: 54 LNLTYRCKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAVEQGKSAEEHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 112 VVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPY 150 >gi|163852621|ref|YP_001640664.1| hypothetical protein Mext_3206 [Methylobacterium extorquens PA1] gi|163664226|gb|ABY31593.1| protein of unknown function UPF0054 [Methylobacterium extorquens PA1] Length = 161 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 4/159 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAI---PELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQELN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A S + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPSQPGLARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYD 160 >gi|229592785|ref|YP_002874904.1| putative metalloprotease [Pseudomonas fluorescens SBW25] gi|259647080|sp|C3K2K8|RRMF_PSEFS RecName: Full=Probable rRNA maturation factor gi|229364651|emb|CAY52573.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 164 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E A E R C + + ++ EL++ D L Sbjct: 4 LDLQLATE-APAPSEAQFREWCALALRQRTAD------------SELTIRLVDEPEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R D TNVLSFP A + +LGD+V+ E++E EA GKE E H HL+ Sbjct: 51 NHTWRQKDYATNVLSFP-ADVPDELLDIPLLGDLVICVEVVEREAKEQGKELEAHWAHLV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD +A ME LE+++L +LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDDEAEEMETLEQTLLAELGHPDPYADD 150 >gi|260774883|ref|ZP_05883784.1| predicted metal-dependent hydrolase [Vibrio coralliilyticus ATCC BAA-450] gi|260609138|gb|EEX35296.1| predicted metal-dependent hydrolase [Vibrio coralliilyticus ATCC BAA-450] Length = 156 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 88/162 (54%), Gaps = 19/162 (11%) Query: 10 RLDLQIAVENALW---GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 LDLQ+AVE+ +++HL AV+ + E+++ D Sbjct: 4 ELDLQLAVEDEKGLPSSEDVHLW------LTSAVAKFQPQA--------EVTVRIVDEQE 49 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN +YRG DKPTNVLSFP F + G +LGD+++ +++E EA+ K H Sbjct: 50 SHQLNHDYRGKDKPTNVLSFP--FEAPPGIEMDLLGDLIICRQVVEQEADQQSKPLMAHW 107 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+++HG LHLLGYDH++D +A ME LE I+ +G DPY Sbjct: 108 AHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMLGMGFEDPY 149 >gi|253687589|ref|YP_003016779.1| hypothetical protein PC1_1195 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645749|sp|C6DBX6|RRMF_PECCP RecName: Full=Probable rRNA maturation factor gi|251754167|gb|ACT12243.1| protein of unknown function UPF0054 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 159 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E A E E F + + ++ + + + E+++ D L Sbjct: 6 LDLQIASEQAQGLPE-------EKDFQRWLEGVLPQF----QEVSEVTIRIVDEAESRDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H++ Sbjct: 55 NNTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAAEQEKTVEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 113 VHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPY 150 >gi|114706888|ref|ZP_01439788.1| hypothetical protein FP2506_18769 [Fulvimarina pelagi HTCC2506] gi|114537836|gb|EAU40960.1| hypothetical protein FP2506_18769 [Fulvimarina pelagi HTCC2506] Length = 188 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGY-FVKENIVELSLVF 61 V + + L ++VE+ W E L F A + +++ + F K ELS+ Sbjct: 11 VPETGASWVSLALSVEDDRW--EAALGN--PEAFVTATLDAVARRFEFSKPFASELSVTL 66 Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 +D + +N ++R DKPTNVLSFP +LGD++LAYE EA K Sbjct: 67 SDDETVREINGQWREKDKPTNVLSFPMVDLEPGERPGPLLGDLILAYETCAREAAGEAKP 126 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 F NH HL++HGFLH LGYDH++D +A ME LE SIL LGI DPY+V Sbjct: 127 FVNHARHLLVHGFLHCLGYDHIEDDEAEEMEALETSILAGLGIPDPYDV 175 >gi|149377494|ref|ZP_01895235.1| predicted metal-dependent hydrolase [Marinobacter algicola DG893] gi|149358186|gb|EDM46667.1| predicted metal-dependent hydrolase [Marinobacter algicola DG893] Length = 157 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 76/127 (59%), Gaps = 2/127 (1%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDI 104 ++ ++ EN E+++ S LN +YRG PTNVLSFP F + G + + GD+ Sbjct: 27 ARAAWLGENPSEVTIRIVASDESADLNSQYRGKSGPTNVLSFP--FEAPAGITVPLAGDL 84 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ ++E EA K + H H+++HG LHL GYDH++D DA VME LE +L LG Sbjct: 85 IICAPVVEKEATEQQKTLKEHWAHMVVHGMLHLQGYDHIEDNDAEVMEALEIRLLGQLGF 144 Query: 165 NDPYEVD 171 ++PYE + Sbjct: 145 SNPYETE 151 >gi|212636646|ref|YP_002313171.1| putative metalloprotease [Shewanella piezotolerans WP3] gi|226706243|sp|B8CSF8|RRMF_SHEPW RecName: Full=Probable rRNA maturation factor gi|212558130|gb|ACJ30584.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 156 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 14/160 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE G E+ E+ A+ + + + EL++ D + Sbjct: 9 ELDLQVAVE----GVELPSVQEMELWVKTALRDSMDQA--------ELTIRIVDVAESQM 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++ EA K H H+ Sbjct: 57 LNSTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLVVCAAVVKQEAIDQNKPLNAHWAHM 114 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HG LHLLGYDH++D +A ME LE ++E LG N+PY+ Sbjct: 115 VVHGCLHLLGYDHIEDIEAEEMESLETQLIESLGYNNPYQ 154 >gi|188582642|ref|YP_001926087.1| hypothetical protein Mpop_3401 [Methylobacterium populi BJ001] gi|179346140|gb|ACB81552.1| protein of unknown function UPF0054 [Methylobacterium populi BJ001] Length = 161 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 4/159 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W + E +AV ++ VE+S++ D ++TLN Sbjct: 5 EIDIAVEDARWEQAV---PDLEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQTLN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAADGPLQPGMARPLGDVVLAYDTLLRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HG LHLLG DH + +A ME LE + L LGI +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRTLGIPNPYD 160 >gi|323495443|ref|ZP_08100520.1| metal-binding heat shock protein [Vibrio brasiliensis LMG 20546] gi|323310366|gb|EGA63553.1| metal-binding heat shock protein [Vibrio brasiliensis LMG 20546] Length = 154 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 90/161 (55%), Gaps = 17/161 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTL--CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 LDLQ+AVE+ E L +L ++ + AV+ + E+++ D Sbjct: 4 ELDLQLAVES-----EDGLPSLEDIQLWLSSAVTKFQPQA--------EVTVRIVDEQES 50 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +YRG DKPTNVLSFP F + G +LGD+++ +++E EA K H Sbjct: 51 HQLNHDYRGKDKPTNVLSFP--FEAPPGMEIDLLGDLIICRQVVEREAIEQNKPLMAHWA 108 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 109 HMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFEDPY 149 >gi|109898525|ref|YP_661780.1| hypothetical protein Patl_2208 [Pseudoalteromonas atlantica T6c] gi|123064566|sp|Q15TR2|RRMF_PSEA6 RecName: Full=Probable rRNA maturation factor gi|109700806|gb|ABG40726.1| protein of unknown function UPF0054 [Pseudoalteromonas atlantica T6c] Length = 152 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 2/114 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ ++ + LN YRG DKPTNVLSFP F + G S +LGD+V+ +++ EA Sbjct: 39 ELTVRIVETQESQELNLTYRGKDKPTNVLSFP--FEAPPGLSLNLLGDLVVCADVVAHEA 96 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + K+ +H H+I+HG LHLLG+DH++D +A ME LE IL+ I+DPY+ Sbjct: 97 DEQHKKLHHHWAHMIVHGALHLLGFDHINDDEAKEMEALEVDILKQFSIDDPYQ 150 >gi|323143880|ref|ZP_08078544.1| translation metalloprotein YbeY [Succinatimonas hippei YIT 12066] gi|322416352|gb|EFY07022.1| translation metalloprotein YbeY [Succinatimonas hippei YIT 12066] Length = 157 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 93/158 (58%), Gaps = 11/158 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQ+A++ +I TL +AK S LI Y K++ + + +V +D I+ L Sbjct: 5 IDLQVAIDPKESLPDIDELTL----WAK--SALIGADYH-KDSEITVRIVASDE--IQEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYR D PTN+LSFP F D +LGD+++ EI+ EA V K ++ H HLI Sbjct: 56 NREYRHKDCPTNILSFP--FECPDVIDLPLLGDLIICDEIVRREAKVQEKTYKEHFAHLI 113 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++ KDA ME LE I+ LG DPY Sbjct: 114 VHGCLHLLGYDHIEAKDAAKMEPLEVKIITKLGYPDPY 151 >gi|148555304|ref|YP_001262886.1| hypothetical protein Swit_2389 [Sphingomonas wittichii RW1] gi|166228577|sp|A5V8Y2|RRMF_SPHWW RecName: Full=Probable rRNA maturation factor gi|148500494|gb|ABQ68748.1| protein of unknown function UPF0054 [Sphingomonas wittichii RW1] Length = 169 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 W D L A+ + E+S+ TD + LN +YR DKPT Sbjct: 12 WADGTDWERLAIEAVTAAMRTTPHAAMLDAAYMAEVSIRLTDDDEVHALNRQYRQKDKPT 71 Query: 82 NVLSFPTAF--------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 NVLSFP S DG ++LGDI+LA + EA G H HLI+HG Sbjct: 72 NVLSFPMVQDDLIEGLDNSDDG--EVLLGDIILARGVCVREAAEKGVPTAEHATHLIVHG 129 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LHLLGYDH++D +A ME LER L LGI+DPY + Sbjct: 130 TLHLLGYDHIEDDEAEAMEDLERVALATLGIDDPYAI 166 >gi|227327388|ref|ZP_03831412.1| putative metalloprotease [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 159 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E A E E F + + ++ + + + E+++ D L Sbjct: 6 LDLQIASEQAQGLPE-------EKDFQRWLEGVLPQF----QEVSEVTIRIVDEAESRDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H++ Sbjct: 55 NNTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEREAAEQEKTVEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 113 VHGSLHLLGYDHIEDSEAEEMEALETEIMQGMGYADPY 150 >gi|157962956|ref|YP_001502990.1| putative metalloprotease [Shewanella pealeana ATCC 700345] gi|189039823|sp|A8H7B8|RRMF_SHEPA RecName: Full=Probable rRNA maturation factor gi|157847956|gb|ABV88455.1| protein of unknown function UPF0054 [Shewanella pealeana ATCC 700345] Length = 156 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+Q+AVE G E+ + E+ A+ + +S+ EL++ D + L Sbjct: 10 LDVQVAVE----GFELPSQAELELWVKTALRDTMSEA--------ELTIRIVDVEESQEL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+V+ ++E EA K H H++ Sbjct: 58 NMTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLVICAAVVEQEAIDQNKPLLAHWAHMV 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D +A ME LE ++E LG +PY+ Sbjct: 116 VHGCLHLLGYDHIEDVEAEEMESLETQLIESLGYINPYK 154 >gi|148251672|ref|YP_001236257.1| hypothetical protein BBta_0048 [Bradyrhizobium sp. BTAi1] gi|172047308|sp|A5E857|RRMF_BRASB RecName: Full=Probable rRNA maturation factor gi|146403845|gb|ABQ32351.1| hypothetical protein BBta_0048 [Bradyrhizobium sp. BTAi1] Length = 169 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/117 (51%), Positives = 75/117 (64%), Gaps = 3/117 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEII 111 E++++ TD I TLN +RGIDKPTNVLSFP D + MLGDI +AYE + Sbjct: 46 AEIAVMLTDDAGIRTLNSNWRGIDKPTNVLSFPALQPTGPRGDDDAPRMLGDIAIAYETM 105 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ K F++HL HL +HGFLHL+GYDH D +A ME LE IL LG+ DPY Sbjct: 106 RREADEEQKPFDHHLSHLTVHGFLHLIGYDHESDAEAEEMEALETEILAHLGVPDPY 162 >gi|99080031|ref|YP_612185.1| hypothetical protein TM1040_0190 [Ruegeria sp. TM1040] gi|99036311|gb|ABF62923.1| protein of unknown function UPF0054 [Ruegeria sp. TM1040] Length = 194 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/171 (39%), Positives = 94/171 (54%), Gaps = 18/171 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 R+ L + +E+A W D L + +AVS ++ E+ E++++ D RI Sbjct: 24 RMILDVVIEDARW-DAAALEKQAQ----EAVSATLAYLELEDEDW-EVTVLGCDDARIAD 77 Query: 70 LNFEYRGIDKPTNVLSFPTA--FASSDGCSSL----------MLGDIVLAYEIIEIEANV 117 LN E+R KPTNVLS+P A+ DG LGDI ++Y+ EAN+ Sbjct: 78 LNAEFREKPKPTNVLSWPAQELAAAQDGGQPTPPEVDFMGDAALGDIAISYDTCVKEANL 137 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K E+H+ HL++HG LHLLGYDH+ D DA +ME LE IL LGI DPY Sbjct: 138 AHKSREDHVRHLLVHGTLHLLGYDHIRDGDATIMETLEVGILGKLGIPDPY 188 >gi|190573586|ref|YP_001971431.1| putative metalloprotease [Stenotrophomonas maltophilia K279a] gi|229553943|sp|B2FJ87|RRMF_STRMK RecName: Full=Probable rRNA maturation factor gi|190011508|emb|CAQ45126.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 161 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 70/116 (60%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D+ ++LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAIRVVDAKEGQSLNRHYRGKDYATNVLSFPAEVPEGLPKGVKFPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ GK H HL +HG LHLLG+DH DDK+A ME LER IL +LGI+DPY Sbjct: 102 READEQGKALNAHYAHLTVHGVLHLLGWDHEDDKEAEAMEQLEREILAELGIDDPY 157 >gi|325920327|ref|ZP_08182264.1| hypothetical protein TIGR00043 [Xanthomonas gardneri ATCC 19865] gi|325549189|gb|EGD20106.1| hypothetical protein TIGR00043 [Xanthomonas gardneri ATCC 19865] Length = 166 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/116 (46%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D +LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 47 ADLAVRIVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLPKGVKMPLLGDLVICAPVVA 106 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK +H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY Sbjct: 107 REAAEQGKSLASHYAHLTVHGTLHLLGWDHADDKEADAMEQLEREILADLGIDDPY 162 >gi|242238552|ref|YP_002986733.1| metalloprotease [Dickeya dadantii Ech703] gi|242130609|gb|ACS84911.1| protein of unknown function UPF0054 [Dickeya dadantii Ech703] Length = 161 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA N E F + + ++ + + + E+++ D L Sbjct: 6 LDLQIACAN-------QDGLPAESTFQRWLEAVLPQF----QEVAEVTVRLVDEEESHHL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAAEQEKTTEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 113 VHGCLHLLGYDHIEDSEAEEMEALETEIMQGMGYADPY 150 >gi|270263721|ref|ZP_06191990.1| putative metalloprotease YbeY [Serratia odorifera 4Rx13] gi|270042605|gb|EFA15700.1| putative metalloprotease YbeY [Serratia odorifera 4Rx13] Length = 157 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/136 (41%), Positives = 79/136 (58%), Gaps = 6/136 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + ++ + F +E V + LV D LN YRG DKPTNVLSFP F + Sbjct: 21 EATFQRWLEGVLPQ--FQEEAEVTIRLV--DEAESNELNLTYRGKDKPTNVLSFP--FEA 74 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 G +LGD+++ +++E EA K E H H+++HG LHLLGYDH++D +A ME Sbjct: 75 PPGIELPLLGDLIICRQVVEQEAVEQDKALEAHWAHMVVHGSLHLLGYDHIEDDEAEEME 134 Query: 153 GLERSILEDLGINDPY 168 LE I+ LG DPY Sbjct: 135 SLETEIMHGLGYPDPY 150 >gi|50120256|ref|YP_049423.1| putative metalloprotease [Pectobacterium atrosepticum SCRI1043] gi|59799108|sp|Q6D7K8|RRMF_ERWCT RecName: Full=Probable rRNA maturation factor gi|49610782|emb|CAG74227.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 159 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E A E E F + + ++ + + + E+++ D L Sbjct: 6 LDLQIASEQAQGLPE-------EKDFQRWLEGVLPQF----QEVSEVTIRIVDEAESRDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H++ Sbjct: 55 NNTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEREAVEQEKTVEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 113 VHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPY 150 >gi|59711364|ref|YP_204140.1| putative metalloprotease [Vibrio fischeri ES114] gi|71658769|sp|Q5E6U4|RRMF_VIBF1 RecName: Full=Probable rRNA maturation factor gi|59479465|gb|AAW85252.1| conserved protein [Vibrio fischeri ES114] Length = 153 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 83/160 (51%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA EN E L T V + EL++ D Sbjct: 4 ELDLQIACENENGLPSEKELMTWLNAVIPQFQPQ------------AELTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H Sbjct: 52 ELNHEYRGKDKPTNVLSFP--FEAPPGLELNLLGDLIICRQVVEEEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH++D +A ME LE +++ +G DPY Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETELMQGMGFEDPY 149 >gi|294676667|ref|YP_003577282.1| hypothetical protein RCAP_rcc01117 [Rhodobacter capsulatus SB 1003] gi|294475487|gb|ADE84875.1| protein of unknown function UPF0054 [Rhodobacter capsulatus SB 1003] Length = 170 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/128 (45%), Positives = 73/128 (57%), Gaps = 13/128 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLM-----------LG 102 E+SL+ D RI LN E+RG PTNVLS+P A DG LG Sbjct: 43 EISLIGCDDARIADLNAEFRGKPTPTNVLSWPAQDLAAEDDGEEPYFPEPFVPGERDSLG 102 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI ++Y+ EA GK +H+ HL+IHG LHLLGYDH+ D DA +ME +E IL L Sbjct: 103 DIAISYQTCLREAEAAGKSVHDHVTHLVIHGVLHLLGYDHIRDADAQLMESIEVRILAAL 162 Query: 163 GINDPYEV 170 GI +PYE+ Sbjct: 163 GIANPYEI 170 >gi|153835655|ref|ZP_01988322.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|156973537|ref|YP_001444444.1| putative metalloprotease [Vibrio harveyi ATCC BAA-1116] gi|269961559|ref|ZP_06175921.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|166228922|sp|A7N1G7|RRMF_VIBHB RecName: Full=Probable rRNA maturation factor gi|148867723|gb|EDL66985.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|156525131|gb|ABU70217.1| hypothetical protein VIBHAR_01228 [Vibrio harveyi ATCC BAA-1116] gi|269833600|gb|EEZ87697.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 154 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 87/160 (54%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E + ++ L + K + + EL++ D Sbjct: 4 ELDLQLAVENE------------EGLPSEQDFQLWLDKTIPLFQPQAELTIRIVDEQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP F G +LGD+++ +++E EA K H H Sbjct: 52 ELNHEYRGKDKPTNVLSFP--FEVPPGMEMDLLGDLIICRQVVEKEAVEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPY 149 >gi|94501474|ref|ZP_01307993.1| hypothetical protein RED65_05912 [Oceanobacter sp. RED65] gi|94426439|gb|EAT11428.1| hypothetical protein RED65_05912 [Oceanobacter sp. RED65] Length = 154 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 14/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+QIA+E GD + T + A+++L + ELS+ D+ ++L Sbjct: 4 VDVQIAIE----GDNLPTPTQLQSWVTAALASLRPEA--------ELSIRLVDNSESQSL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYRG DKPTNVLSFP ++ + ++GD+V+ + ++ EA K E+H H Sbjct: 52 NHEYRGKDKPTNVLSFPFEIPPELAEIENFTLIGDLVICHPVVCQEAAEQKKPLEHHYAH 111 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++IHG LHLLGYDH+++ +A ME LE IL L I DPY Sbjct: 112 MVIHGCLHLLGYDHINEDEAEEMERLETDILATLNIPDPY 151 >gi|119944306|ref|YP_941986.1| hypothetical protein Ping_0533 [Psychromonas ingrahamii 37] gi|145558834|sp|A1SSC2|RRMF_PSYIN RecName: Full=Probable rRNA maturation factor gi|119862910|gb|ABM02387.1| hypothetical protein UPF0054 [Psychromonas ingrahamii 37] Length = 158 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 2/133 (1%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F K + I G EL++ D I LN +YR I K TNVL+FP F + G Sbjct: 23 FEKWIEAAILGGSESHREEAELTVRIVDQDEIMQLNHQYRNISKTTNVLAFP--FQNPPG 80 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + +LGD+++ E++E EA + GK H H+ IH LHLLGYDH++ +A ME LE Sbjct: 81 LTLPLLGDLIICKEVVESEAKLQGKSLTAHWAHMSIHSTLHLLGYDHIEQAEAVEMESLE 140 Query: 156 RSILEDLGINDPY 168 +L +LG DPY Sbjct: 141 TKLLTELGFTDPY 153 >gi|254521495|ref|ZP_05133550.1| conserved hypothetical protein TIGR00043 [Stenotrophomonas sp. SKA14] gi|219719086|gb|EED37611.1| conserved hypothetical protein TIGR00043 [Stenotrophomonas sp. SKA14] Length = 156 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D+ ++LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 37 ADLAIRVVDAKEGQSLNRHYRGKDYATNVLSFPAELPEGLPKGVKFPLLGDLVICAPVVA 96 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ GK H HL +HG LHLLG+DH DDK+A ME LER IL +LGI DPY Sbjct: 97 READEQGKALNAHYAHLTVHGVLHLLGWDHEDDKEAEAMEQLEREILAELGIADPY 152 >gi|70732739|ref|YP_262502.1| putative metalloprotease [Pseudomonas fluorescens Pf-5] gi|123652712|sp|Q4K5I1|RRMF_PSEF5 RecName: Full=Probable rRNA maturation factor gi|68347038|gb|AAY94644.1| conserved hypothetical protein TIGR00043 [Pseudomonas fluorescens Pf-5] Length = 152 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ A + DE R CE+ + ++ EL++ D L Sbjct: 4 LDLQRASQQPAPSDE-QFRQWCELALRQRTAD------------SELTIRLVDEAEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R D TNVLSFP A + +LGD+V+ ++E EA GKE + H HL+ Sbjct: 51 NHTWRHKDYATNVLSFP-ADVPDELLDIPLLGDLVICIAVVEREAAEQGKELQAHWAHLV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD +A ME LER++L +LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDDEAEEMEALERTLLAELGHPDPYADD 150 >gi|83949575|ref|ZP_00958308.1| hypothetical protein ISM_00735 [Roseovarius nubinhibens ISM] gi|83837474|gb|EAP76770.1| hypothetical protein ISM_00735 [Roseovarius nubinhibens ISM] Length = 166 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 10/125 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLM--------LGDIV 105 E+SL+ D RI LN E+R +PTNVLS+P+ A + G + LGDI Sbjct: 42 EISLLACDDARIAGLNEEFRDKPRPTNVLSWPSEERGAETPGARPDLPEPGFDPELGDIA 101 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +++E EA GK E+H+ HLI+H LHLLGYDH+ D+DA +ME E IL +LG++ Sbjct: 102 ISWETCAAEARAAGKPVEDHVTHLIVHAVLHLLGYDHIRDQDATLMEAEEVVILGNLGLD 161 Query: 166 DPYEV 170 DPY V Sbjct: 162 DPYSV 166 >gi|153840647|ref|ZP_01993314.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|260900743|ref|ZP_05909138.1| putative metalloprotease [Vibrio parahaemolyticus AQ4037] gi|149745688|gb|EDM56819.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|308108997|gb|EFO46537.1| putative metalloprotease [Vibrio parahaemolyticus AQ4037] Length = 154 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E + ++ L + K + + E+++ D Sbjct: 4 ELDLQLAVENE------------EGLPSQQDFQLWLDKTIPLFQPQAEVTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H Sbjct: 52 ALNHEYRGKDKPTNVLSFP--FEAPPGMEIDLLGDLIICRQVVEKEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPY 149 >gi|183598129|ref|ZP_02959622.1| hypothetical protein PROSTU_01494 [Providencia stuartii ATCC 25827] gi|188020288|gb|EDU58328.1| hypothetical protein PROSTU_01494 [Providencia stuartii ATCC 25827] Length = 155 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 85/159 (53%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E DE + E V K F ++ E+++ D Sbjct: 6 LDLQLACEETTGLPDEALFQRWLEAVLPK----------FQPQS--EVTIRIVDEEESHH 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAIEQQKSAEEHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE IL +LG DPY Sbjct: 112 VVHGCLHLLGYDHIEDDEAEEMESLETEILAELGYADPY 150 >gi|166711740|ref|ZP_02242947.1| hypothetical protein Xoryp_09845 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 161 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/116 (46%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D +LN+ YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAVRVVDEKEGCSLNYHYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY Sbjct: 102 REAAEQGKSLAAHYAHLTVHGTLHLLGWDHDDDKEADAMEQLEREILADLGIDDPY 157 >gi|28897505|ref|NP_797110.1| putative metalloprotease [Vibrio parahaemolyticus RIMD 2210633] gi|260363860|ref|ZP_05776612.1| putative metalloprotease [Vibrio parahaemolyticus K5030] gi|260878353|ref|ZP_05890708.1| putative metalloprotease [Vibrio parahaemolyticus AN-5034] gi|260898987|ref|ZP_05907428.1| putative metalloprotease [Vibrio parahaemolyticus Peru-466] gi|31077048|sp|Q87RP6|RRMF_VIBPA RecName: Full=Probable rRNA maturation factor gi|28805717|dbj|BAC58994.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087470|gb|EFO37165.1| putative metalloprotease [Vibrio parahaemolyticus Peru-466] gi|308090264|gb|EFO39959.1| putative metalloprotease [Vibrio parahaemolyticus AN-5034] gi|308114631|gb|EFO52171.1| putative metalloprotease [Vibrio parahaemolyticus K5030] gi|328472486|gb|EGF43349.1| metal-binding heat shock protein [Vibrio parahaemolyticus 10329] Length = 154 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 88/160 (55%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E + ++ L + K + + E+++ D Sbjct: 4 ELDLQLAVENE------------EGLPSQQDFQLWLDKTIPLFQPQAEVTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H Sbjct: 52 ALNHEYRGKDKPTNVLSFP--FEAPPGMEIDLLGDLIICRQVVEKEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPY 149 >gi|302185145|ref|ZP_07261818.1| putative metalloprotease [Pseudomonas syringae pv. syringae 642] Length = 166 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E + DE R CE+ G + EL++ D L Sbjct: 4 LDLQVASETSA-PDEAQFRLWCEM------------GLRQRSADSELTIRLVDESEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEADEMEALERTLLEELGYPDPYADD 150 >gi|261867460|ref|YP_003255382.1| putative metalloprotease [Aggregatibacter actinomycetemcomitans D11S-1] gi|46577549|sp|Q9JRS8|RRMF_AGGAC RecName: Full=Probable rRNA maturation factor gi|8096199|dbj|BAA96100.1| unnamed protein product [Actinobacillus actinomycetemcomitans] gi|261412792|gb|ACX82163.1| putative metalloprotease in flp 5' region [Aggregatibacter actinomycetemcomitans D11S-1] Length = 154 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 82/158 (51%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA DE L T A + + + VE+++ D L Sbjct: 6 IDLQIAS-----ADESGLPT------AAQIEQWATAAVQPQSGEVEMTVRIVDETESHAL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 NF YRG D PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NFNYRGKDHPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAQEQEKPLIAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMMGLGFVDPY 150 >gi|301155988|emb|CBW15458.1| conserved protein [Haemophilus parainfluenzae T3T1] Length = 154 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+++ D LN YRG D+PTNVLSFP F D +LGD+V+ +++E E Sbjct: 39 VEMTVRIVDEAESHDLNLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVERE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K H H+I+HG LHLLGYDH+DD +A ME LE I++ LG DPY Sbjct: 97 AIEQEKPLMAHWAHMIVHGSLHLLGYDHIDDDEAEEMESLETEIMQGLGFADPY 150 >gi|90407493|ref|ZP_01215676.1| hypothetical protein PCNPT3_11282 [Psychromonas sp. CNPT3] gi|90311414|gb|EAS39516.1| hypothetical protein PCNPT3_11282 [Psychromonas sp. CNPT3] Length = 157 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 86/158 (54%), Gaps = 9/158 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA DE L +L + + I KG + EL++ DS + L Sbjct: 5 IDLQIAT-----MDEKALPSLA--LIETWIKEAIIKGSSITREEAELTVRIVDSVESQQL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR DKPTNVLSFP F + G +LGD+V+ +I+E EA K+ H H++ Sbjct: 58 NGQYRHKDKPTNVLSFP--FQAPMGIQLPLLGDLVICKQIVEQEALEQNKDLNAHWAHML 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLG+DH+ ++ A ME LE IL LG PY Sbjct: 116 IHGSLHLLGFDHIIEQQALEMESLETKILVTLGFPPPY 153 >gi|145572763|sp|Q1GK93|RRMF_SILST RecName: Full=Probable rRNA maturation factor Length = 170 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 18/168 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + +E+A W D L + +AVS ++ E+ E++++ D RI LN Sbjct: 3 LDVVIEDARW-DAAALEKQAQ----EAVSATLAYLELEDEDW-EVTVLGCDDARIADLNA 56 Query: 73 EYRGIDKPTNVLSFPTA--FASSDGCSSL----------MLGDIVLAYEIIEIEANVLGK 120 E+R KPTNVLS+P A+ DG LGDI ++Y+ EAN+ K Sbjct: 57 EFREKPKPTNVLSWPAQELAAAQDGGQPTPPEVDFMGDAALGDIAISYDTCVKEANLAHK 116 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+H+ HL++HG LHLLGYDH+ D DA +ME LE IL LGI DPY Sbjct: 117 SREDHVRHLLVHGTLHLLGYDHIRDGDATIMETLEVGILGKLGIPDPY 164 >gi|194365130|ref|YP_002027740.1| putative metalloprotease [Stenotrophomonas maltophilia R551-3] gi|238693470|sp|B4SQK2|RRMF_STRM5 RecName: Full=Probable rRNA maturation factor gi|194347934|gb|ACF51057.1| protein of unknown function UPF0054 [Stenotrophomonas maltophilia R551-3] Length = 161 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D+ ++LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAIRVVDAKEGQSLNRHYRGKDYATNVLSFPADVPEGLPKGVKFPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA+ GK H HL +HG LHLLG+DH DDK+A ME LER IL +LGI DPY Sbjct: 102 READEQGKALNAHYAHLTVHGVLHLLGWDHEDDKEAEAMEQLEREILAELGIADPY 157 >gi|83854732|ref|ZP_00948262.1| hypothetical protein NAS141_08391 [Sulfitobacter sp. NAS-14.1] gi|83842575|gb|EAP81742.1| hypothetical protein NAS141_08391 [Sulfitobacter sp. NAS-14.1] Length = 174 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 90/171 (52%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + E+ W + L TLC A+++L + + E++++ D I TLN Sbjct: 4 LDVIEEDPRWAG-LDLDTLCPRAMRAALAHL-----SLDADTAEVTVLACDDAHIATLNA 57 Query: 73 EYRGIDKPTNVLSFPT--AFASSDG----------CSSLMLGDIVLAYEIIEIEANVLGK 120 ++R PTNVLS+P A DG + L LGDI ++Y+ EA G+ Sbjct: 58 DFRDKPTPTNVLSWPAEERGAVRDGELPLPVTPGFDNMLELGDIAISYDTCHAEAEAAGR 117 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H+ HLI+HG LHLLGYDH D DA +ME LE IL LG++DPY D Sbjct: 118 PMADHVTHLIVHGLLHLLGYDHERDGDATLMERLEVEILGKLGLDDPYRDD 168 >gi|218531462|ref|YP_002422278.1| hypothetical protein Mchl_3530 [Methylobacterium chloromethanicum CM4] gi|218523765|gb|ACK84350.1| protein of unknown function UPF0054 [Methylobacterium chloromethanicum CM4] Length = 161 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 4/159 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAI---PELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQALN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPFQPGVARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYD 160 >gi|148244289|ref|YP_001218983.1| hypothetical protein COSY_0125 [Candidatus Vesicomyosocius okutanii HA] gi|166200323|sp|A5CXS1|RRMF_VESOH RecName: Full=Probable rRNA maturation factor gi|146326116|dbj|BAF61259.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 145 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 55/113 (48%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL + D I+ LN YR D+PTNVLSFPT +LGD+V+ +I+ E+ Sbjct: 35 ELLVRLVDEAEIQNLNKVYRYKDEPTNVLSFPTDLPIE--IDEKILGDVVICIQIVLKES 92 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K F NHL+H+ +HG LHLLGYDH+D KDA M LER IL +GIN+PY Sbjct: 93 IEQHKSFNNHLMHMAVHGTLHLLGYDHIDTKDAQNMANLERKILAKIGINNPY 145 >gi|83941255|ref|ZP_00953717.1| hypothetical protein EE36_03463 [Sulfitobacter sp. EE-36] gi|83847075|gb|EAP84950.1| hypothetical protein EE36_03463 [Sulfitobacter sp. EE-36] Length = 174 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 90/171 (52%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + E+ W + L TLC +++L + + E++++ D I TLN Sbjct: 4 LDVIEEDPRWAG-LDLDTLCPRAMRATLAHL-----SLDADTAEVTVLACDDAHIATLNA 57 Query: 73 EYRGIDKPTNVLSFPT--AFASSDG----------CSSLMLGDIVLAYEIIEIEANVLGK 120 ++R PTNVLS+P A+ DG + L LGDI ++Y+ EA G+ Sbjct: 58 DFRDKPTPTNVLSWPAEERGAARDGELPLPVTPGFDNMLELGDIAISYDTCHAEAEAAGR 117 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H+ HLI+HG LHLLGYDH D DA +ME LE IL LG++DPY D Sbjct: 118 PMADHVTHLIVHGLLHLLGYDHERDGDATLMERLEVEILGKLGLDDPYRDD 168 >gi|37525277|ref|NP_928621.1| putative metalloprotease [Photorhabdus luminescens subsp. laumondii TTO1] gi|46577360|sp|Q7N748|RRMF_PHOLL RecName: Full=Probable rRNA maturation factor gi|36784704|emb|CAE13604.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 155 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLC-EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E H + L E +F + ++ + F E+ E+++ D Sbjct: 6 LDLQIACE--------HSQGLPKETLFQHWLDGVLPQ--FQSES--EVTIRIVDEAESHD 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG +KPTNVLSFP F + +LGD+++ +++E EA K E H H+ Sbjct: 54 LNLTYRGKNKPTNVLSFP--FEAPPEIDLPLLGDLIICRQVVEKEAEEQQKTIEEHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I++ LG DPY Sbjct: 112 VVHGCLHLLGYDHIEDDEAEEMESLETEIMQKLGYADPY 150 >gi|227114978|ref|ZP_03828634.1| putative metalloprotease [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 159 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E E E F + + ++ + + I E+++ D L Sbjct: 6 LDLQIASEQTQGLPE-------EKDFQRWLEGVLPQF----QEISEVTIRIVDEAESRDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E E+ K E H H++ Sbjct: 55 NNTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVERESAEQEKTVEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 113 VHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPY 150 >gi|71280897|ref|YP_270242.1| hypothetical protein CPS_3574 [Colwellia psychrerythraea 34H] gi|123631588|sp|Q47Y78|RRMF_COLP3 RecName: Full=Probable rRNA maturation factor gi|71146637|gb|AAZ27110.1| conserved hypothetical protein TIGR00043 [Colwellia psychrerythraea 34H] Length = 155 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ ++ + LN +YR DKPTNVLSFP F DG +LGD+++ E+++ EA Sbjct: 42 ELTIRLVNNEESQQLNKQYRDKDKPTNVLSFP--FEVPDGIELNLLGDLIICIEVMKQEA 99 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K H HL+IHG LHL+G+DH+ D +A ME +E +ILE LGI++PY Sbjct: 100 QEQNKALFEHWAHLVIHGCLHLVGFDHISDTEALEMESIEITILEKLGISNPY 152 >gi|152996922|ref|YP_001341757.1| hypothetical protein Mmwyl1_2911 [Marinomonas sp. MWYL1] gi|189039860|sp|A6VZE3|RRMF_MARMS RecName: Full=Probable rRNA maturation factor gi|150837846|gb|ABR71822.1| protein of unknown function UPF0054 [Marinomonas sp. MWYL1] Length = 154 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 85/160 (53%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA E A E R E KA+ + + E+++ D Sbjct: 5 ELDLQIATEETANLPSEADFRLWVE----KALPEVDEE--------FEVTIRIVDEEESH 52 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP F + G +LGD+V+ +I+ EA KE +H H Sbjct: 53 ALNHEYRGKDKPTNVLSFP--FEAPPGLELPLLGDLVICAQIVAKEAAEQNKELFHHWAH 110 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHL GYDH++D +A ME +E +L L I+DPY Sbjct: 111 MTIHGILHLRGYDHINDDEADEMESIETELLASLSISDPY 150 >gi|289665628|ref|ZP_06487209.1| putative metalloprotease [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 161 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 54/116 (46%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D +LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAKLPEGLPKGIKMPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY Sbjct: 102 REAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEADAMEQLEREILADLGIDDPY 157 >gi|289671363|ref|ZP_06492438.1| putative metalloprotease [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 161 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 54/116 (46%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D +LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPKGLPQGIKMPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY Sbjct: 102 REAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEADAMEQLEREILADLGIDDPY 157 >gi|194439895|ref|ZP_03071958.1| conserved hypothetical protein [Escherichia coli 101-1] gi|253774357|ref|YP_003037188.1| metalloprotease [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160738|ref|YP_003043846.1| putative metalloprotease [Escherichia coli B str. REL606] gi|300907838|ref|ZP_07125454.1| hypothetical protein HMPREF9536_05750 [Escherichia coli MS 84-1] gi|300931596|ref|ZP_07146908.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 187-1] gi|301302142|ref|ZP_07208275.1| hypothetical protein HMPREF9347_00710 [Escherichia coli MS 124-1] gi|194421189|gb|EDX37213.1| conserved hypothetical protein [Escherichia coli 101-1] gi|242376433|emb|CAQ31135.1| conserved protein involved in translation [Escherichia coli BL21(DE3)] gi|253325401|gb|ACT30003.1| protein of unknown function UPF0054 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972639|gb|ACT38310.1| hypothetical protein ECB_00627 [Escherichia coli B str. REL606] gi|253976833|gb|ACT42503.1| hypothetical protein ECD_00627 [Escherichia coli BL21(DE3)] gi|300400470|gb|EFJ84008.1| hypothetical protein HMPREF9536_05750 [Escherichia coli MS 84-1] gi|300460620|gb|EFK24113.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 187-1] gi|300842694|gb|EFK70454.1| hypothetical protein HMPREF9347_00710 [Escherichia coli MS 124-1] gi|315255034|gb|EFU35002.1| putative metalloprotease YbeY [Escherichia coli MS 85-1] gi|323963227|gb|EGB58795.1| hypothetical protein ERGG_00413 [Escherichia coli H489] gi|332342006|gb|AEE55340.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 155 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F KE+ E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQKES--EVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|254427071|ref|ZP_05040778.1| conserved hypothetical protein TIGR00043, putative [Alcanivorax sp. DG881] gi|196193240|gb|EDX88199.1| conserved hypothetical protein TIGR00043, putative [Alcanivorax sp. DG881] Length = 175 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 66/168 (39%), Positives = 88/168 (52%), Gaps = 13/168 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + + P +D+Q A + DE HL CE V A I+ G V + ++L Sbjct: 1 MNGIPTPTVDIQWASDAPDAPDEPHL---CEWVRHAA----IAAGGVVGD----ITLRIV 49 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D I TLN +YR D TNVLSFP +G +LGDI++ ++ EA+ K Sbjct: 50 DEDEIRTLNRDYRDKDATTNVLSFPFDMPEGLPEGAVEPLLGDIIICDAVVCREASEQHK 109 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + H H++ HG LHLLGYDH+DD DA VME LE L +LG DPY Sbjct: 110 PLDAHWAHMVTHGVLHLLGYDHIDDDDALVMETLEIRALGELGFPDPY 157 >gi|58582392|ref|YP_201408.1| putative metalloprotease [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624266|ref|YP_451638.1| putative metalloprotease [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|62901406|sp|Q5GZ48|RRMF_XANOR RecName: Full=Probable rRNA maturation factor gi|123521734|sp|Q2P263|RRMF_XANOM RecName: Full=Probable rRNA maturation factor gi|58426986|gb|AAW76023.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368206|dbj|BAE69364.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 161 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 54/116 (46%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D +LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAVRLVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY Sbjct: 102 REAAEQGKSLAAHYAHLTVHGTLHLLGWDHDDDKEADAMEQLEREILADLGIDDPY 157 >gi|152985334|ref|YP_001346512.1| putative metalloprotease [Pseudomonas aeruginosa PA7] gi|150960492|gb|ABR82517.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 168 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 86/171 (50%), Gaps = 15/171 (8%) Query: 2 SVKKVNLP-RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 + + V +P LDLQ+A + A E R CE+ + + EL++ Sbjct: 3 AARAVTMPLELDLQVASDAADLPSEAQFRAWCELALRQRAES-------------ELTIR 49 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D LN YR D TNVLSFP A + +LGD+V+ ++ EA K Sbjct: 50 LVDEAEGLELNSTYRHKDYATNVLSFP-ADVPEEFLDIPLLGDLVICAPVVAREAREQHK 108 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 + H HL+IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 109 PLQAHWAHLVIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 159 >gi|119470864|ref|ZP_01613475.1| hypothetical protein ATW7_05976 [Alteromonadales bacterium TW-7] gi|119446091|gb|EAW27370.1| hypothetical protein ATW7_05976 [Alteromonadales bacterium TW-7] Length = 152 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 89/168 (52%), Gaps = 32/168 (19%) Query: 10 RLDLQIAVEN---------ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 LDLQIA E ALW D KA+S + EL++V Sbjct: 4 ELDLQIACEFDNLPSEAQFALWAD-------------KALSQYRDES--------ELTIV 42 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 +D + + LN +YRG +KPTNVLSF F + G ++GD+V+ I+ EA K Sbjct: 43 ISDEAQSQQLNNDYRGKNKPTNVLSF--EFEAPPGIELPLVGDLVICPAIVLAEAVEQEK 100 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 F +H H++IHG LHLLG+DH+ +DA ME +E+ +L +L I DPY Sbjct: 101 SFHDHFAHMVIHGCLHLLGFDHIKSEDALQMESIEKQLLAELNIADPY 148 >gi|293391337|ref|ZP_06635671.1| putative metalloprotease in flp 5' region [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951871|gb|EFE01990.1| putative metalloprotease in flp 5' region [Aggregatibacter actinomycetemcomitans D7S-1] Length = 154 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 82/158 (51%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA DE L T A + + + +E+++ D L Sbjct: 6 IDLQIAS-----ADESGLPT------AAQIEQWATAAVQPQSGEIEMTVRIVDETESHAL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLNYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAQEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMIGLGFVDPY 150 >gi|126730911|ref|ZP_01746720.1| hypothetical protein SSE37_13898 [Sagittula stellata E-37] gi|126708627|gb|EBA07684.1| hypothetical protein SSE37_13898 [Sagittula stellata E-37] Length = 178 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/141 (42%), Positives = 80/141 (56%), Gaps = 19/141 (13%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGCSSLML------ 101 FV ++ E++++ RI LN ++RG PTNVLS+PT S D L Sbjct: 34 FVADD-YEIAVMGCSDGRIAILNADFRGRPAPTNVLSWPTQELTSPDAGGDPFLPHLDDD 92 Query: 102 ----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 GD+ LA+E E EA K +H+ HL++HG LHL+GYDH+ D DA +M Sbjct: 93 FEAMGEPHHLGDLALAWETCEREAAEQDKSMADHVTHLLVHGVLHLMGYDHIRDADATLM 152 Query: 152 EGLERSILEDLGINDPY-EVD 171 EGLER IL +LGI DPY E+D Sbjct: 153 EGLERGILGNLGIADPYREID 173 >gi|21243197|ref|NP_642779.1| metalloprotease [Xanthomonas axonopodis pv. citri str. 306] gi|294624980|ref|ZP_06703631.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664274|ref|ZP_06729644.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|26006928|sp|Q8PJR6|RRMF_XANAC RecName: Full=Probable rRNA maturation factor gi|21108723|gb|AAM37315.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gi|292600702|gb|EFF44788.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605946|gb|EFF49227.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 161 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 54/116 (46%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D +LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY Sbjct: 102 REAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEAEAMEQLEREILADLGIDDPY 157 >gi|262274720|ref|ZP_06052531.1| predicted metal-dependent hydrolase [Grimontia hollisae CIP 101886] gi|262221283|gb|EEY72597.1| predicted metal-dependent hydrolase [Grimontia hollisae CIP 101886] Length = 154 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA +N D + T + F +AV + + E+++ D ++L Sbjct: 5 VDLQIATQNT---DNLPTDTQFQQWFEQAVQSFREQA--------EVTIRLVDEEESQSL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K+ H H++ Sbjct: 54 NRDYRGKDKPTNVLSFP--FDAPPGIELDLLGDLVICRQVVEKEAEEQNKDLFAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D++A ME LE SI+ LG ++PY D Sbjct: 112 VHGSLHLLGYDHINDEEAEEMESLEISIMNALGFDNPYAAD 152 >gi|325578691|ref|ZP_08148767.1| metal-dependent hydrolase [Haemophilus parainfluenzae ATCC 33392] gi|325159730|gb|EGC71861.1| metal-dependent hydrolase [Haemophilus parainfluenzae ATCC 33392] Length = 154 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 52/114 (45%), Positives = 69/114 (60%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+++ D LN YRG D+PTNVLSFP F D +LGD+V+ +++E E Sbjct: 39 VEMTVRIVDKAESHDLNLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVERE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K H H+I+HG LHLLGYDH++D +A ME LE I++ LG DPY Sbjct: 97 AIEQEKPLMAHWAHMIVHGSLHLLGYDHIEDDEAEEMESLETEIMQGLGFADPY 150 >gi|325914749|ref|ZP_08177087.1| hypothetical protein TIGR00043 [Xanthomonas vesicatoria ATCC 35937] gi|325539026|gb|EGD10684.1| hypothetical protein TIGR00043 [Xanthomonas vesicatoria ATCC 35937] Length = 161 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/116 (46%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D +LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG+DH DDK+A ME LER IL DLGI DPY Sbjct: 102 REAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEADAMEQLEREILADLGIEDPY 157 >gi|254511649|ref|ZP_05123716.1| conserved hypothetical protein TIGR00043 [Rhodobacteraceae bacterium KLH11] gi|221535360|gb|EEE38348.1| conserved hypothetical protein TIGR00043 [Rhodobacteraceae bacterium KLH11] Length = 164 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 22/173 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYF-VKENIVELSLVFTDSHRIET 69 ++L++ +E+ W E + A++ ++ GY ++ ++ E+SL+ + RI Sbjct: 1 MNLEVTLEDDRW-------QALEPLARHAIAEVL--GYCGLEADLCEISLLGCNDARIAI 51 Query: 70 LNFEYRGIDKPTNVLSFPT------------AFASSDGCSSLMLGDIVLAYEIIEIEANV 117 LN E+R PTNVLS+P D + LGDI ++Y+ EA Sbjct: 52 LNAEFRETPTPTNVLSWPAEDLAADLPGDKPRQPKPDFTGEIALGDIAISYDTCAREAAE 111 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GK H+ HLI+HG LHLLGYDH+ D DA +ME +E IL LGI+DPY V Sbjct: 112 AGKPMGAHVTHLIVHGALHLLGYDHIRDPDATLMEAVEVEILGKLGIDDPYNV 164 >gi|163747523|ref|ZP_02154873.1| hypothetical protein OIHEL45_01040 [Oceanibulbus indolifex HEL-45] gi|161379201|gb|EDQ03620.1| hypothetical protein OIHEL45_01040 [Oceanibulbus indolifex HEL-45] Length = 181 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 18/170 (10%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D I +E+ W + + L L + +L + E++L+ D RI LN Sbjct: 14 DFDIVIEDDRW-EAVDLERLAHAAAQATLGHL-----GLDAETAEMTLLACDDARIAVLN 67 Query: 72 FEYRGIDKPTNVLSFPT--AFASSDGCSSLM----------LGDIVLAYEIIEIEANVLG 119 ++RG + TNVLS+P A++ G L LGDI +AYE EA+ Sbjct: 68 EDFRGKARATNVLSWPAEERGAAAPGGDPLPVAPGIDGMLELGDIAMAYETCAAEASAAA 127 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K H+ HLI+HG LHLLGYDH +D DA +MEGLER IL +G +DPY+ Sbjct: 128 KPLNAHVTHLIVHGLLHLLGYDHENDPDAMLMEGLEREILGKMGYDDPYK 177 >gi|82775936|ref|YP_402283.1| putative metalloprotease [Shigella dysenteriae Sd197] gi|309786321|ref|ZP_07680947.1| uncharacterized family UPF0054 family protein [Shigella dysenteriae 1617] gi|123563234|sp|Q32IR3|RRMF_SHIDS RecName: Full=Probable rRNA maturation factor YbeY gi|81240084|gb|ABB60794.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308925715|gb|EFP71196.1| uncharacterized family UPF0054 family protein [Shigella dysenteriae 1617] Length = 155 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E++++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTILVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|188576119|ref|YP_001913048.1| putative metalloprotease [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520571|gb|ACD58516.1| conserved hypothetical protein, putative [Xanthomonas oryzae pv. oryzae PXO99A] Length = 137 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/116 (46%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D +LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 18 ADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVA 77 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY Sbjct: 78 REAAEQGKSLAAHYAHLTVHGTLHLLGWDHDDDKEADAMEQLEREILADLGIDDPY 133 >gi|260767224|ref|ZP_05876165.1| predicted metal-dependent hydrolase [Vibrio furnissii CIP 102972] gi|260617732|gb|EEX42910.1| predicted metal-dependent hydrolase [Vibrio furnissii CIP 102972] gi|315180849|gb|ADT87763.1| hypothetical protein vfu_A02642 [Vibrio furnissii NCTC 11218] Length = 154 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN EYRG DK TNVLSFP F + G +LGD+V+ +++E E Sbjct: 38 AEVTIRIVDEPESHQLNLEYRGKDKSTNVLSFP--FEAPPGIEMDLLGDLVICRQVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K H H+++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 96 AVEQNKPLLAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQTMGFEDPY 149 >gi|3639064|gb|AAC36473.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 140 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 77/136 (56%), Gaps = 6/136 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + +I + F +E V + LV D L YRG DKPTNVLSFP F + Sbjct: 6 EAQFQTWLDGVIPQ--FQEEAEVTIRLV--DEAETPDLILTYRGKDKPTNVLSFP--FEA 59 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 G +LGD++++ +++E EA E H H+++HG LHLLGYDH+DD +A ME Sbjct: 60 PAGIEMPLLGDLIISRQVVEQEAQEQTNPLEAHWAHMVVHGSLHLLGYDHIDDDEAEEME 119 Query: 153 GLERSILEDLGINDPY 168 LE I+ +G DPY Sbjct: 120 SLETEIMLAMGYEDPY 135 >gi|304310520|ref|YP_003810118.1| Protein of unknown function UPF0054 [gamma proteobacterium HdN1] gi|301796253|emb|CBL44461.1| Protein of unknown function UPF0054 [gamma proteobacterium HdN1] Length = 166 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/113 (48%), Positives = 67/113 (59%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL+L LN EYRG D PTNVLSFP F + G S +LGD+ + EI+E EA Sbjct: 50 ELTLRVVLPTESRELNREYRGKDAPTNVLSFP--FEAPPGISIPILGDLAICAEIVEQEA 107 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GK H H++IHG LHLLG+DH+ D +A ME LE S+L I DPY Sbjct: 108 REQGKASNAHWAHMVIHGTLHLLGFDHIHDDEADAMEALEISLLAGFDITDPY 160 >gi|332532465|ref|ZP_08408343.1| A heat shock protein involved in translation, predicted protease [Pseudoalteromonas haloplanktis ANT/505] gi|332038108|gb|EGI74555.1| A heat shock protein involved in translation, predicted protease [Pseudoalteromonas haloplanktis ANT/505] Length = 152 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 89/171 (52%), Gaps = 32/171 (18%) Query: 10 RLDLQIAVEN---------ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 LDLQIA E ALW D KA+S + ELS+V Sbjct: 4 ELDLQIACEFDNLPSEEQFALWAD-------------KALSQYRDES--------ELSIV 42 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 +D + + LN +YRG +KPTNVLSF F + G ++GD+++ I+ EA K Sbjct: 43 ISDEAQSQQLNNDYRGKNKPTNVLSF--EFEAPPGIDIPLVGDLIICPAIVLAEAIEQEK 100 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 F +H H++IHG LHLLG+DH+ DA ME +E+ +L +L I DPY D Sbjct: 101 SFHDHFAHMVIHGCLHLLGFDHIKSDDALEMESIEKQLLAELNIADPYRDD 151 >gi|315127053|ref|YP_004069056.1| hypothetical protein PSM_A1982 [Pseudoalteromonas sp. SM9913] gi|315015567|gb|ADT68905.1| hypothetical protein PSM_A1982 [Pseudoalteromonas sp. SM9913] Length = 152 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 2/116 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++V +D + + LN +YRG +KPTNVLSF F + G ++GD+++ I+ EA Sbjct: 38 ELTIVISDEAQSQQLNNDYRGKNKPTNVLSF--EFEAPPGIDIPLVGDLIICPAIVLAEA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K F +H H++IHG LHLLG+DH+ +DA ME +E+ +L +L I DPY D Sbjct: 96 QEQEKSFHDHFAHMVIHGCLHLLGFDHIKSEDALEMESIEKQLLAELNIADPYRDD 151 >gi|310766986|gb|ADP11936.1| conserved uncharacterized protein YbeY [Erwinia sp. Ejp617] Length = 155 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 89/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A ++ E L T E F + + ++ + F E+ V + LV D L Sbjct: 6 LDLQLACKS-----EQGLPT--EADFQRWLEAVLPQ--FQPESEVTIRLV--DEAESHQL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E H H++ Sbjct: 55 NHTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAAEQEKVLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH+ D +A ME LE I+ LG DPY Sbjct: 113 IHGSLHLLGYDHIVDDEAEEMESLETEIMLALGYPDPY 150 >gi|319786434|ref|YP_004145909.1| hypothetical protein Psesu_0825 [Pseudoxanthomonas suwonensis 11-1] gi|317464946|gb|ADV26678.1| protein of unknown function UPF0054 [Pseudoxanthomonas suwonensis 11-1] Length = 163 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 2/140 (1%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 V A++ ++ + +L++ D+ + LN YRG D TNVLSFP Sbjct: 21 VPAAQSFRKWVAAALAGRIREADLAIRIVDAPEGQALNRHYRGKDYATNVLSFPAEMPEG 80 Query: 94 --DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A M Sbjct: 81 LPKGIKFPLLGDLVICAPVVAREAAEQGKPLAAHYAHLTVHGTLHLLGWDHEDDKEAEAM 140 Query: 152 EGLERSILEDLGINDPYEVD 171 E LER IL LG+ DPY + Sbjct: 141 EQLEREILAGLGLPDPYAAE 160 >gi|85374528|ref|YP_458590.1| metal-dependent hydrolase [Erythrobacter litoralis HTCC2594] gi|122544125|sp|Q2N948|RRMF_ERYLH RecName: Full=Probable rRNA maturation factor gi|84787611|gb|ABC63793.1| predicted metal-dependent hydrolase [Erythrobacter litoralis HTCC2594] Length = 161 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/122 (49%), Positives = 70/122 (57%), Gaps = 10/122 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-------MLGDIVLA 107 +E S++FT ++ LN E+R DKPTNVLSFP D +L MLGDI LA Sbjct: 38 LETSVLFTSDEQVHVLNREWRERDKPTNVLSFP--MLDRDRLRALEPEGPPEMLGDIALA 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGIND 166 YE EA G E H HLI+HG LHL G+DHVD D A ME LE + L LGI D Sbjct: 96 YETCAREAEEKGISLEAHATHLIVHGLLHLAGHDHVDSDAQAEEMEALEIAALAKLGIAD 155 Query: 167 PY 168 PY Sbjct: 156 PY 157 >gi|310815236|ref|YP_003963200.1| Putative metalloprotease [Ketogulonicigenium vulgare Y25] gi|308753971|gb|ADO41900.1| Putative metalloprotease [Ketogulonicigenium vulgare Y25] Length = 165 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 10/124 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML----------GDI 104 +E+SL+ + RI LN ++RG KPTNVLS+P+ + + + GDI Sbjct: 38 LEISLLACNDARIAELNADFRGKPKPTNVLSWPSEERGARTAGDMPMLPQAGDDPEIGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A+E EA+ GK + H+ HL++HG LHLLG+DH D+DA +MEGLE IL +GI Sbjct: 98 AIAFETCAREADEGGKALDVHVTHLLVHGCLHLLGFDHERDEDAALMEGLETEILGKMGI 157 Query: 165 NDPY 168 DPY Sbjct: 158 ADPY 161 >gi|21231768|ref|NP_637685.1| putative metalloprotease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768106|ref|YP_242868.1| putative metalloprotease [Xanthomonas campestris pv. campestris str. 8004] gi|188991236|ref|YP_001903246.1| putative metalloprotease [Xanthomonas campestris pv. campestris str. B100] gi|26006927|sp|Q8P8B2|RRMF_XANCP RecName: Full=Probable rRNA maturation factor gi|81305917|sp|Q4UVS5|RRMF_XANC8 RecName: Full=Probable rRNA maturation factor gi|229554360|sp|B0RRV9|RRMF_XANCB RecName: Full=Probable rRNA maturation factor gi|21113476|gb|AAM41609.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573438|gb|AAY48848.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732996|emb|CAP51194.1| Conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length = 161 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D +LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAEMPQGLPKGVKMPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG+DH DDK+A ME LER IL +LGI+DPY Sbjct: 102 REAAEQGKSLSAHYAHLTVHGTLHLLGWDHEDDKEADAMEQLEREILAELGIDDPY 157 >gi|261253664|ref|ZP_05946237.1| predicted metal-dependent hydrolase [Vibrio orientalis CIP 102891] gi|260937055|gb|EEX93044.1| predicted metal-dependent hydrolase [Vibrio orientalis CIP 102891] Length = 110 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 2/106 (1%) Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D LN +YRG DKPTNVLSFP F + G +LGD+++ +++E EA K Sbjct: 2 DEKESHQLNHDYRGKDKPTNVLSFP--FEAPPGIEIDLLGDLIICRQVVEREAIEQNKPL 59 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH++D +A ME LE I++ +G NDPY Sbjct: 60 MAHWAHMVVHGSLHLLGYDHIEDDEAEKMESLETEIMQRMGFNDPY 105 >gi|285018848|ref|YP_003376559.1| hypothetical protein XALc_2084 [Xanthomonas albilineans GPE PC73] gi|283474066|emb|CBA16567.1| hypothetical protein XALc_2084 [Xanthomonas albilineans] Length = 161 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/116 (44%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAIRLVDQREGRALNQHYRGKDYATNVLSFPAELPDGLPKGIRLPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG+DH DDK+A ME LER IL +LG++DPY Sbjct: 102 REAAEQGKPLNAHYAHLTVHGVLHLLGWDHEDDKEAEAMEQLERQILGELGLSDPY 157 >gi|329847362|ref|ZP_08262390.1| uncharacterized protein family UPF0054 family protein [Asticcacaulis biprosthecum C19] gi|328842425|gb|EGF91994.1| uncharacterized protein family UPF0054 family protein [Asticcacaulis biprosthecum C19] Length = 160 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 89/160 (55%), Gaps = 7/160 (4%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P +D++I E W D L +VV + L + + + ++V ++ D ++ Sbjct: 3 PLIDIEI--EEDGWLDA--LPDAVDVVETAVTAALKAVNFTDQADVV---VLLCDDAEMK 55 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYR DK TNVLSFP + LGD+ L + EA GK +NH++H Sbjct: 56 RLNAEYRNKDKATNVLSFPAPKSMQIKGVLDHLGDMALGLQTCVREAREQGKTLKNHVLH 115 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L +HG LHLLGYDH+ D +A ME LERSIL++LG+ DPY Sbjct: 116 LSVHGTLHLLGYDHLHDAEAETMENLERSILKNLGVADPY 155 >gi|121997682|ref|YP_001002469.1| hypothetical protein Hhal_0891 [Halorhodospira halophila SL1] gi|145558843|sp|A1WVF5|RRMF_HALHL RecName: Full=Probable rRNA maturation factor gi|121589087|gb|ABM61667.1| protein of unknown function UPF0054 [Halorhodospira halophila SL1] Length = 154 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 1/115 (0%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIE 114 EL++ D LN +YRG DKPTNVLSFP ++ +LGD+V+ ++ E Sbjct: 38 ELTVRIVDEDESRALNRDYRGRDKPTNVLSFPCELPPGLPAEAAQILGDLVVCAPVVARE 97 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 A GK +H H+++HG LHLLGYDH D A ME ER IL LG+ DPY+ Sbjct: 98 AAEQGKPEADHWAHMLVHGALHLLGYDHEDPAQAERMEAEERRILAALGVPDPYQ 152 >gi|187730605|ref|YP_001879332.1| putative metalloprotease [Shigella boydii CDC 3083-94] gi|238691682|sp|B2TU61|RRMF_SHIB3 RecName: Full=Probable rRNA maturation factor YbeY gi|187427597|gb|ACD06871.1| conserved hypothetical protein [Shigella boydii CDC 3083-94] Length = 155 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETKIMLALGYEDPY 150 >gi|84515223|ref|ZP_01002585.1| hypothetical protein SKA53_01156 [Loktanella vestfoldensis SKA53] gi|84510506|gb|EAQ06961.1| hypothetical protein SKA53_01156 [Loktanella vestfoldensis SKA53] Length = 164 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 10/145 (6%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-----A 89 A+ S+ + ++ ++ E++++ D RI LN ++RG PTNVLS+P+ A Sbjct: 19 ALAQQASDAVFDRLGLEPSVFEIAVLACDDARIAALNADFRGKPAPTNVLSWPSDERAPA 78 Query: 90 FA-----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 A D LGDI +AY+ EA G +F +H +HL++HG LHLLG+DH Sbjct: 79 VAGEMPLPPDPVMDTELGDIAIAYDTCLREAEAAGSQFIHHCLHLLVHGTLHLLGFDHER 138 Query: 145 DKDACVMEGLERSILEDLGINDPYE 169 D DA +MEGLE IL +G+++PY Sbjct: 139 DLDATLMEGLEVEILGKMGVDNPYR 163 >gi|300927234|ref|ZP_07142966.1| hypothetical protein HMPREF9548_05209 [Escherichia coli MS 182-1] gi|301329191|ref|ZP_07222182.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 78-1] gi|300416800|gb|EFK00111.1| hypothetical protein HMPREF9548_05209 [Escherichia coli MS 182-1] gi|300844479|gb|EFK72239.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 78-1] Length = 155 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A EN + +E +T V + F +E+ E+++ D+ + Sbjct: 6 LDLQLACENNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|85709121|ref|ZP_01040187.1| predicted metal-dependent hydrolase [Erythrobacter sp. NAP1] gi|85690655|gb|EAQ30658.1| predicted metal-dependent hydrolase [Erythrobacter sp. NAP1] Length = 161 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/118 (47%), Positives = 72/118 (61%), Gaps = 6/118 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-----SDGCSSLMLGDIVLAYEII 111 +S++FT + TLN E+R DKPTNVLSFP + + MLGDI LAYE Sbjct: 40 VSILFTSDGEVHTLNREWRQRDKPTNVLSFPMMERAELLELGEEGPPAMLGDIALAYETC 99 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 EA ++H HLI+HG LHL G+DHV +++A VME LERS L ++GI DPY Sbjct: 100 AREAAEKNIPLDHHAAHLIVHGLLHLAGHDHVHCEEEAQVMEDLERSALANMGIADPY 157 >gi|77359990|ref|YP_339565.1| hypothetical protein PSHAa1044 [Pseudoalteromonas haloplanktis TAC125] gi|123589178|sp|Q3IK77|RRMF_PSEHT RecName: Full=Probable rRNA maturation factor gi|76874901|emb|CAI86122.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 152 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 89/168 (52%), Gaps = 32/168 (19%) Query: 10 RLDLQIAVEN---------ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 LDLQIA E ALW D KA+S + EL++V Sbjct: 4 ELDLQIACEFDNLPSEAQFALWAD-------------KALSQYRDES--------ELTIV 42 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 +D + + LN +YRG +KPTNVLSF F + G ++GD+V+ I+ EA K Sbjct: 43 ISDEAQSQQLNNDYRGKNKPTNVLSF--EFEAPPGIDIPLVGDLVICPAIVLAEAIEQEK 100 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 F +H H++IHG LHLLG+DH+ +DA ME +E+ +L +L I DPY Sbjct: 101 SFHDHFAHMVIHGCLHLLGFDHIKSEDAFEMESIEKQLLAELNIADPY 148 >gi|117924738|ref|YP_865355.1| hypothetical protein Mmc1_1438 [Magnetococcus sp. MC-1] gi|145572756|sp|A0L7K6|RRMF_MAGSM RecName: Full=Probable rRNA maturation factor gi|117608494|gb|ABK43949.1| protein of unknown function UPF0054 [Magnetococcus sp. MC-1] Length = 147 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 8/122 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-------SLMLGDIVLA 107 +E+S++ +D ++ LN +YRG DKPTN+LSF + D +LGD++LA Sbjct: 25 LEVSVLLSDDEAVQALNAQYRGKDKPTNILSFAMEEEADDAMPMPIMAGEPRLLGDLILA 84 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDLGIND 166 Y+ ++ EA K F+ HL HL++HG LHLLGYDH +D A E E +IL LG+ + Sbjct: 85 YQTVQREAAEQDKPFDQHLTHLLVHGTLHLLGYDHERSEDEAQQQEAREIAILAQLGLPN 144 Query: 167 PY 168 PY Sbjct: 145 PY 146 >gi|83313564|ref|YP_423828.1| metal-dependent hydrolase [Magnetospirillum magneticum AMB-1] gi|123540295|sp|Q2VYQ6|RRMF_MAGSA RecName: Full=Probable rRNA maturation factor gi|82948405|dbj|BAE53269.1| Predicted metal-dependent hydrolase [Magnetospirillum magneticum AMB-1] Length = 164 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 5/123 (4%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC----SSLMLGDIV 105 + + +VELS+V D ++ LN ++RG D+PTNVLSF + D + L+LGD++ Sbjct: 40 LPDGVVELSIVLADDATVQGLNRDWRGKDQPTNVLSF-ASLDDEDAPVVPGAPLLLGDVI 98 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LA+E EA+ GK +H HL++HG LHLLGYDH+DD++A ME LE ++L LGI+ Sbjct: 99 LAFETCAAEAHDQGKTLADHFSHLVVHGVLHLLGYDHMDDEEAAEMEALETTLLAALGID 158 Query: 166 DPY 168 DPY Sbjct: 159 DPY 161 >gi|149914113|ref|ZP_01902645.1| S-adenosylmethionine synthetase [Roseobacter sp. AzwK-3b] gi|149812397|gb|EDM72228.1| S-adenosylmethionine synthetase [Roseobacter sp. AzwK-3b] Length = 165 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 18/156 (11%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L L E A+++L + + E++++ D RI LN ++R PTNVLS Sbjct: 15 LDLPGLAETAARAALTHL-----GLAPDAWEIAILACDDARIAALNADFRDKPVPTNVLS 69 Query: 86 FPT-------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +P A A + + LGDI +A++ + EA GK +H+ HLI+H Sbjct: 70 WPETDLAPDTPGARPEAPAQAGDDAPTPLGDIAIAWDTCQREAEAAGKPLPDHVTHLIVH 129 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLLGYDH+ D+DA +ME E +IL LG+ DPY Sbjct: 130 AVLHLLGYDHIRDQDATLMETTEVAILGKLGVPDPY 165 >gi|16128642|ref|NP_415192.1| metal-binding heat shock protein required for rRNA maturation [Escherichia coli str. K-12 substr. MG1655] gi|24112043|ref|NP_706553.1| putative metalloprotease [Shigella flexneri 2a str. 301] gi|30062154|ref|NP_836325.1| putative metalloprotease [Shigella flexneri 2a str. 2457T] gi|74311195|ref|YP_309614.1| putative metalloprotease [Shigella sonnei Ss046] gi|82543103|ref|YP_407050.1| metalloprotease [Shigella boydii Sb227] gi|89107528|ref|AP_001308.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|91209702|ref|YP_539688.1| putative metalloprotease [Escherichia coli UTI89] gi|110804693|ref|YP_688213.1| putative metalloprotease [Shigella flexneri 5 str. 8401] gi|157156781|ref|YP_001461830.1| putative metalloprotease [Escherichia coli E24377A] gi|157160147|ref|YP_001457465.1| putative metalloprotease [Escherichia coli HS] gi|170020984|ref|YP_001725938.1| putative metalloprotease [Escherichia coli ATCC 8739] gi|170080339|ref|YP_001729659.1| hypothetical protein ECDH10B_0728 [Escherichia coli str. K-12 substr. DH10B] gi|188492875|ref|ZP_03000145.1| conserved hypothetical protein [Escherichia coli 53638] gi|191168675|ref|ZP_03030455.1| conserved hypothetical protein [Escherichia coli B7A] gi|193063449|ref|ZP_03044539.1| conserved hypothetical protein [Escherichia coli E22] gi|193069038|ref|ZP_03049996.1| conserved hypothetical protein [Escherichia coli E110019] gi|194429738|ref|ZP_03062254.1| conserved hypothetical protein [Escherichia coli B171] gi|209917921|ref|YP_002292005.1| putative metalloprotease [Escherichia coli SE11] gi|218549764|ref|YP_002383555.1| metalloprotease [Escherichia fergusonii ATCC 35469] gi|218553201|ref|YP_002386114.1| putative metalloprotease [Escherichia coli IAI1] gi|218557590|ref|YP_002390503.1| metalloprotease [Escherichia coli S88] gi|218694098|ref|YP_002401765.1| putative metalloprotease [Escherichia coli 55989] gi|237707372|ref|ZP_04537853.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|238899936|ref|YP_002925732.1| hypothetical protein BWG_0530 [Escherichia coli BW2952] gi|256020611|ref|ZP_05434476.1| putative metalloprotease [Shigella sp. D9] gi|256023730|ref|ZP_05437595.1| putative metalloprotease [Escherichia sp. 4_1_40B] gi|260842885|ref|YP_003220663.1| hypothetical protein ECO103_0666 [Escherichia coli O103:H2 str. 12009] gi|260853910|ref|YP_003227801.1| hypothetical protein ECO26_0734 [Escherichia coli O26:H11 str. 11368] gi|260866807|ref|YP_003233209.1| hypothetical protein ECO111_0689 [Escherichia coli O111:H- str. 11128] gi|291281608|ref|YP_003498426.1| hypothetical protein G2583_0822 [Escherichia coli O55:H7 str. CB9615] gi|293413953|ref|ZP_06656602.1| metalloprotease ybeY [Escherichia coli B185] gi|293418772|ref|ZP_06661207.1| metalloprotease ybeY [Escherichia coli B088] gi|300817820|ref|ZP_07098034.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 107-1] gi|300823023|ref|ZP_07103157.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 119-7] gi|300937872|ref|ZP_07152665.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 21-1] gi|300951161|ref|ZP_07165024.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 116-1] gi|300959235|ref|ZP_07171310.1| hypothetical protein HMPREF9547_04899 [Escherichia coli MS 175-1] gi|301028857|ref|ZP_07192033.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 196-1] gi|301643925|ref|ZP_07243952.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 146-1] gi|307137275|ref|ZP_07496631.1| putative metalloprotease [Escherichia coli H736] gi|307312624|ref|ZP_07592256.1| protein of unknown function UPF0054 [Escherichia coli W] gi|309795472|ref|ZP_07689889.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 145-7] gi|312970736|ref|ZP_07784917.1| uncharacterized family UPF0054 family protein [Escherichia coli 1827-70] gi|331641162|ref|ZP_08342297.1| putative metalloprotease YbeY [Escherichia coli H736] gi|331651672|ref|ZP_08352691.1| putative metalloprotease YbeY [Escherichia coli M718] gi|331667014|ref|ZP_08367888.1| putative metalloprotease YbeY [Escherichia coli TA271] gi|331672192|ref|ZP_08372984.1| putative metalloprotease YbeY [Escherichia coli TA280] gi|331676321|ref|ZP_08377033.1| putative metalloprotease YbeY [Escherichia coli H591] gi|332281801|ref|ZP_08394214.1| conserved hypothetical protein [Shigella sp. D9] gi|62906654|sp|P0A898|RRMF_ECOLI RecName: Full=Probable rRNA maturation factor YbeY gi|62906655|sp|P0A899|RRMF_SHIFL RecName: Full=Probable rRNA maturation factor YbeY gi|122424610|sp|Q1REQ7|RRMF_ECOUT RecName: Full=Probable rRNA maturation factor YbeY gi|122957569|sp|Q0T6R8|RRMF_SHIF8 RecName: Full=Probable rRNA maturation factor YbeY gi|123560316|sp|Q324N6|RRMF_SHIBS RecName: Full=Probable rRNA maturation factor YbeY gi|123617771|sp|Q3Z4D3|RRMF_SHISS RecName: Full=Probable rRNA maturation factor YbeY gi|166919068|sp|A7ZJ51|RRMF_ECO24 RecName: Full=Probable rRNA maturation factor YbeY gi|166919069|sp|A7ZXS8|RRMF_ECOHS RecName: Full=Probable rRNA maturation factor YbeY gi|189041073|sp|B1IYE9|RRMF_ECOLC RecName: Full=Probable rRNA maturation factor YbeY gi|226704001|sp|B6HYM8|RRMF_ECOSE RecName: Full=Probable rRNA maturation factor YbeY gi|226710475|sp|B7MFS5|RRMF_ECO45 RecName: Full=Probable rRNA maturation factor YbeY gi|226710477|sp|B7M5I6|RRMF_ECO8A RecName: Full=Probable rRNA maturation factor YbeY gi|226710480|sp|B7LKU5|RRMF_ESCF3 RecName: Full=Probable rRNA maturation factor YbeY gi|229485211|sp|B1X654|RRMF_ECODH RecName: Full=Probable rRNA maturation factor YbeY gi|254807365|sp|B7L9K6|RRMF_ECO55 RecName: Full=Probable rRNA maturation factor YbeY gi|259710207|sp|C4ZWE6|RRMF_ECOBW RecName: Full=Probable rRNA maturation factor YbeY gi|56554600|pdb|1XM5|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|56554601|pdb|1XM5|B Chain B, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|56554602|pdb|1XM5|C Chain C, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|56554603|pdb|1XM5|D Chain D, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|1778578|gb|AAB40861.1| HI0004 homolog [Escherichia coli] gi|1786880|gb|AAC73760.1| metal-binding heat shock protein required for rRNA maturation [Escherichia coli str. K-12 substr. MG1655] gi|4062278|dbj|BAA35314.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|24050866|gb|AAN42260.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30040399|gb|AAP16131.1| hypothetical protein S0645 [Shigella flexneri 2a str. 2457T] gi|73854672|gb|AAZ87379.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81244514|gb|ABB65222.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91071276|gb|ABE06157.1| hypothetical protein UTI89_C0657 [Escherichia coli UTI89] gi|110614241|gb|ABF02908.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|157065827|gb|ABV05082.1| conserved hypothetical protein [Escherichia coli HS] gi|157078811|gb|ABV18519.1| conserved hypothetical protein [Escherichia coli E24377A] gi|169755912|gb|ACA78611.1| protein of unknown function UPF0054 [Escherichia coli ATCC 8739] gi|169888174|gb|ACB01881.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|188488074|gb|EDU63177.1| conserved hypothetical protein [Escherichia coli 53638] gi|190901267|gb|EDV61036.1| conserved hypothetical protein [Escherichia coli B7A] gi|192931033|gb|EDV83637.1| conserved hypothetical protein [Escherichia coli E22] gi|192957582|gb|EDV88027.1| conserved hypothetical protein [Escherichia coli E110019] gi|194412219|gb|EDX28525.1| conserved hypothetical protein [Escherichia coli B171] gi|209776878|gb|ACI86751.1| hypothetical protein ECs0697 [Escherichia coli] gi|209776884|gb|ACI86754.1| hypothetical protein ECs0697 [Escherichia coli] gi|209911180|dbj|BAG76254.1| conserved hypothetical protein [Escherichia coli SE11] gi|218350830|emb|CAU96526.1| putative metal-dependent hydrolase [Escherichia coli 55989] gi|218357305|emb|CAQ89940.1| putative metal-dependent hydrolase [Escherichia fergusonii ATCC 35469] gi|218359969|emb|CAQ97513.1| putative metal-dependent hydrolase [Escherichia coli IAI1] gi|218364359|emb|CAR02034.1| putative metal-dependent hydrolase [Escherichia coli S88] gi|226898582|gb|EEH84841.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|238860283|gb|ACR62281.1| conserved protein [Escherichia coli BW2952] gi|257752559|dbj|BAI24061.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257758032|dbj|BAI29529.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257763163|dbj|BAI34658.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|260450174|gb|ACX40596.1| protein of unknown function UPF0054 [Escherichia coli DH1] gi|281600007|gb|ADA72991.1| putative metal-dependent hydrolase [Shigella flexneri 2002017] gi|284920459|emb|CBG33520.1| conserved hypothetical protein [Escherichia coli 042] gi|290761481|gb|ADD55442.1| conserved hypothetical protein [Escherichia coli O55:H7 str. CB9615] gi|291325300|gb|EFE64715.1| metalloprotease ybeY [Escherichia coli B088] gi|291434011|gb|EFF06984.1| metalloprotease ybeY [Escherichia coli B185] gi|294491060|gb|ADE89816.1| conserved hypothetical protein [Escherichia coli IHE3034] gi|299878162|gb|EFI86373.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 196-1] gi|300314164|gb|EFJ63948.1| hypothetical protein HMPREF9547_04899 [Escherichia coli MS 175-1] gi|300449564|gb|EFK13184.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 116-1] gi|300457115|gb|EFK20608.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 21-1] gi|300524372|gb|EFK45441.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 119-7] gi|300529517|gb|EFK50579.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 107-1] gi|301077695|gb|EFK92501.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 146-1] gi|306907326|gb|EFN37831.1| protein of unknown function UPF0054 [Escherichia coli W] gi|307627910|gb|ADN72214.1| putative metalloprotease [Escherichia coli UM146] gi|308120847|gb|EFO58109.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 145-7] gi|309700897|emb|CBJ00194.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|310337385|gb|EFQ02523.1| uncharacterized family UPF0054 family protein [Escherichia coli 1827-70] gi|313649695|gb|EFS14119.1| uncharacterized family UPF0054 family protein [Shigella flexneri 2a str. 2457T] gi|315059913|gb|ADT74240.1| conserved protein [Escherichia coli W] gi|315135325|dbj|BAJ42484.1| hypothetical protein ECDH1ME8569_0628 [Escherichia coli DH1] gi|315287092|gb|EFU46506.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 110-3] gi|315616420|gb|EFU97037.1| uncharacterized family UPF0054 family protein [Escherichia coli 3431] gi|320174709|gb|EFW49841.1| putative metalloprotease [Shigella dysenteriae CDC 74-1112] gi|320183047|gb|EFW57912.1| putative metalloprotease [Shigella flexneri CDC 796-83] gi|320198215|gb|EFW72819.1| putative metalloprotease [Escherichia coli EC4100B] gi|320638109|gb|EFX07873.1| metal-binding heat shock protein [Escherichia coli O157:H7 str. G5101] gi|320643513|gb|EFX12683.1| metal-binding heat shock protein [Escherichia coli O157:H- str. 493-89] gi|320648848|gb|EFX17475.1| metal-binding heat shock protein [Escherichia coli O157:H- str. H 2687] gi|320654432|gb|EFX22479.1| metal-binding heat shock protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660114|gb|EFX27644.1| metal-binding heat shock protein [Escherichia coli O55:H7 str. USDA 5905] gi|320664912|gb|EFX32047.1| metal-binding heat shock protein [Escherichia coli O157:H7 str. LSU-61] gi|323153614|gb|EFZ39862.1| hypothetical protein ECEPECA14_4414 [Escherichia coli EPECa14] gi|323158886|gb|EFZ44897.1| hypothetical protein ECE128010_4803 [Escherichia coli E128010] gi|323170784|gb|EFZ56434.1| hypothetical protein ECLT68_4849 [Escherichia coli LT-68] gi|323179862|gb|EFZ65419.1| hypothetical protein ECOK1180_1271 [Escherichia coli 1180] gi|323379523|gb|ADX51791.1| protein of unknown function UPF0054 [Escherichia coli KO11] gi|323938420|gb|EGB34674.1| hypothetical protein ERCG_00456 [Escherichia coli E1520] gi|323943073|gb|EGB39232.1| hypothetical protein ERDG_00410 [Escherichia coli E482] gi|323945134|gb|EGB41196.1| hypothetical protein EREG_03318 [Escherichia coli H120] gi|323952770|gb|EGB48638.1| hypothetical protein ERKG_00543 [Escherichia coli H252] gi|323958412|gb|EGB54118.1| hypothetical protein ERLG_00402 [Escherichia coli H263] gi|323967605|gb|EGB63021.1| hypothetical protein ERJG_01183 [Escherichia coli M863] gi|323972113|gb|EGB67327.1| hypothetical protein ERHG_01926 [Escherichia coli TA007] gi|323976359|gb|EGB71449.1| hypothetical protein ERFG_02795 [Escherichia coli TW10509] gi|324006278|gb|EGB75497.1| hypothetical protein HMPREF9532_04037 [Escherichia coli MS 57-2] gi|324016066|gb|EGB85285.1| hypothetical protein HMPREF9542_05327 [Escherichia coli MS 117-3] gi|324114780|gb|EGC08748.1| hypothetical protein ERIG_00774 [Escherichia fergusonii B253] gi|324116733|gb|EGC10648.1| hypothetical protein ERBG_03409 [Escherichia coli E1167] gi|325498162|gb|EGC96021.1| metal-binding heat shock protein required for rRNA maturation [Escherichia fergusonii ECD227] gi|327254343|gb|EGE65965.1| hypothetical protein ECSTEC7V_0796 [Escherichia coli STEC_7v] gi|331037960|gb|EGI10180.1| putative metalloprotease YbeY [Escherichia coli H736] gi|331049950|gb|EGI22008.1| putative metalloprotease YbeY [Escherichia coli M718] gi|331066238|gb|EGI38122.1| putative metalloprotease YbeY [Escherichia coli TA271] gi|331070659|gb|EGI42022.1| putative metalloprotease YbeY [Escherichia coli TA280] gi|331076379|gb|EGI47661.1| putative metalloprotease YbeY [Escherichia coli H591] gi|332097751|gb|EGJ02725.1| hypothetical protein SB359474_0560 [Shigella boydii 3594-74] gi|332104153|gb|EGJ07499.1| conserved hypothetical protein [Shigella sp. D9] gi|332760969|gb|EGJ91257.1| hypothetical protein SF434370_0836 [Shigella flexneri 4343-70] gi|332761159|gb|EGJ91445.1| hypothetical protein SF274771_0770 [Shigella flexneri 2747-71] gi|332763338|gb|EGJ93578.1| hypothetical protein SFK671_0733 [Shigella flexneri K-671] gi|332768237|gb|EGJ98422.1| conserved protein involved in translation [Shigella flexneri 2930-71] gi|333007427|gb|EGK26907.1| hypothetical protein SFVA6_1074 [Shigella flexneri VA-6] gi|333008105|gb|EGK27581.1| hypothetical protein SFK218_0936 [Shigella flexneri K-218] gi|333010075|gb|EGK29510.1| hypothetical protein SFK272_0934 [Shigella flexneri K-272] gi|333020906|gb|EGK40166.1| hypothetical protein SFK227_0890 [Shigella flexneri K-227] gi|333021512|gb|EGK40762.1| hypothetical protein SFK304_0840 [Shigella flexneri K-304] Length = 155 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|218699023|ref|YP_002406652.1| putative metalloprotease [Escherichia coli IAI39] gi|226710476|sp|B7NM10|RRMF_ECO7I RecName: Full=Probable rRNA maturation factor YbeY gi|218369009|emb|CAR16763.1| putative metal-dependent hydrolase [Escherichia coli IAI39] Length = 155 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ DS Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDSAESHC 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|78048198|ref|YP_364373.1| putative metalloprotease [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925033|ref|ZP_08186455.1| hypothetical protein TIGR00043 [Xanthomonas perforans 91-118] gi|123730288|sp|Q3BS90|RRMF_XANC5 RecName: Full=Probable rRNA maturation factor gi|78036628|emb|CAJ24319.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544545|gb|EGD15906.1| hypothetical protein TIGR00043 [Xanthomonas perforans 91-118] Length = 161 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 54/116 (46%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D +LN YRG D TNVLSFP G +LGD+V+ ++ Sbjct: 42 ADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY Sbjct: 102 REAAEQGKLLAAHYAHLTVHGTLHLLGWDHEDDKEAEAMEQLEREILADLGIDDPY 157 >gi|170718769|ref|YP_001783953.1| hypothetical protein HSM_0615 [Haemophilus somnus 2336] gi|238688012|sp|B0US54|RRMF_HAES2 RecName: Full=Probable rRNA maturation factor gi|168826898|gb|ACA32269.1| protein of unknown function UPF0054 [Haemophilus somnus 2336] Length = 154 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN-IVELSLVFTDSHRIET 69 +DLQIA E+A +L ++ ++ L + EN E+++ D Sbjct: 6 IDLQIASEDA-----TNLPSVEQI-------QLWANAAIRAENSQPEMTVRIVDEEESHH 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F D ++GD+V+ +++E EA K H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FECPDEIELPLIGDLVICRQVVEREATEQEKPLMAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 IVHGSLHLLGYDHIEDDEAEEMERLETEIMLSLGFTDPY 150 >gi|300920524|ref|ZP_07136950.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 115-1] gi|300412463|gb|EFJ95773.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 115-1] Length = 155 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|323163922|gb|EFZ49731.1| hypothetical protein SS53G_5761 [Shigella sonnei 53G] gi|323184986|gb|EFZ70353.1| hypothetical protein ECOK1357_1645 [Escherichia coli 1357] Length = 152 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ D+ + Sbjct: 3 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDTAESHS 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 51 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 109 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 147 >gi|194434467|ref|ZP_03066728.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|194417318|gb|EDX33426.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|320178450|gb|EFW53418.1| putative metalloprotease [Shigella boydii ATCC 9905] gi|332094331|gb|EGI99382.1| hypothetical protein SB521682_0667 [Shigella boydii 5216-82] gi|332096773|gb|EGJ01763.1| hypothetical protein SD15574_0958 [Shigella dysenteriae 155-74] Length = 155 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTVRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|114798379|ref|YP_758839.1| hypothetical protein HNE_0105 [Hyphomonas neptunium ATCC 15444] gi|123129252|sp|Q0C604|RRMF_HYPNA RecName: Full=Probable rRNA maturation factor gi|114738553|gb|ABI76678.1| conserved hypothetical protein TIGR00043 [Hyphomonas neptunium ATCC 15444] Length = 150 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 12/155 (7%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 VE+ W L LC F A Y ++L+ D+H + LN ++R Sbjct: 8 VEDDSWAALGDLEALCRKAFDAA-------EYVAPVEEGNIALLLADNHVLHQLNLDFRS 60 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 DKPT+VLSFP+ LGDI +A+ + +A + GK + HLVHL+IHG+LH Sbjct: 61 KDKPTDVLSFPSL-----PMDRPFLGDIAVAWGVSASDAKIQGKPLDAHLVHLLIHGYLH 115 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LLG+DH D +A ME LE L L I +PY D Sbjct: 116 LLGFDHETDDEAAEMEALEIKALASLDIANPYRND 150 >gi|88860581|ref|ZP_01135219.1| hypothetical protein PTD2_16192 [Pseudoalteromonas tunicata D2] gi|88817779|gb|EAR27596.1| hypothetical protein PTD2_16192 [Pseudoalteromonas tunicata D2] Length = 152 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 2/116 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ D + LN +YRG +KPTNVLSFP F + G ++GD+++ +++ EA Sbjct: 37 ELTIRIADEAESQQLNNDYRGKNKPTNVLSFP--FEAPPGIELPLVGDLIICPQVVYQEA 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K F +H H+++HG LHLLG+DH++ +DA ME E+ IL LGI+DPY D Sbjct: 95 LEQEKSFHDHFAHMVVHGCLHLLGFDHIEAEDAEEMESNEKEILAKLGISDPYRDD 150 >gi|119477444|ref|ZP_01617635.1| hypothetical protein GP2143_00682 [marine gamma proteobacterium HTCC2143] gi|119449370|gb|EAW30609.1| hypothetical protein GP2143_00682 [marine gamma proteobacterium HTCC2143] Length = 166 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 87/161 (54%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA E+ D + + V A S+ +EN VEL++ D + L Sbjct: 6 VDLQIASED---DDHPPPASFEQWVQAAVASH--------QEN-VELTVRIVDEEESQYL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRGI+KPTNVLSFP D +LGD+++ ++ EA K H H++ Sbjct: 54 NDRYRGINKPTNVLSFPADL--PDHIDIPLLGDLIICAPVVAQEAKAQNKPCLCHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH+DD DA ME LE IL L I +PY ++ Sbjct: 112 VHGTLHLLGYDHIDDHDAEEMEALEVKILASLEIANPYSIN 152 >gi|167643996|ref|YP_001681659.1| hypothetical protein Caul_0023 [Caulobacter sp. K31] gi|189030198|sp|B0T157|RRMF_CAUSK RecName: Full=Probable rRNA maturation factor gi|167346426|gb|ABZ69161.1| protein of unknown function UPF0054 [Caulobacter sp. K31] Length = 162 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/110 (47%), Positives = 65/110 (59%), Gaps = 1/110 (0%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ D ++TLN ++R D TNVLSFP+ S +GDI LA+ + + EA Sbjct: 46 ILLADDDSVQTLNRDFRQKDYATNVLSFPS-VTSPGANPEGQIGDIALAFGVCQREAAEQ 104 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GK +HL HL+ HG LHLLGYDH DD DA ME ER IL L I DPY Sbjct: 105 GKSLAHHLQHLVAHGVLHLLGYDHQDDADAEAMEAFEREILAGLDIPDPY 154 >gi|15800372|ref|NP_286384.1| putative metalloprotease [Escherichia coli O157:H7 EDL933] gi|15829951|ref|NP_308724.1| metalloprotease [Escherichia coli O157:H7 str. Sakai] gi|168752228|ref|ZP_02777250.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|168758301|ref|ZP_02783308.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|168764665|ref|ZP_02789672.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|168767105|ref|ZP_02792112.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|168777601|ref|ZP_02802608.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|168779149|ref|ZP_02804156.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|168786508|ref|ZP_02811515.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|168802432|ref|ZP_02827439.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|195939396|ref|ZP_03084778.1| putative metalloprotease [Escherichia coli O157:H7 str. EC4024] gi|208808538|ref|ZP_03250875.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208816422|ref|ZP_03257601.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208822844|ref|ZP_03263162.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209397406|ref|YP_002269294.1| hypothetical protein ECH74115_0752 [Escherichia coli O157:H7 str. EC4115] gi|217326196|ref|ZP_03442280.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254791822|ref|YP_003076659.1| putative metalloprotease [Escherichia coli O157:H7 str. TW14359] gi|261224127|ref|ZP_05938408.1| hypothetical protein EscherichiacoliO157_05909 [Escherichia coli O157:H7 str. FRIK2000] gi|261257821|ref|ZP_05950354.1| hypothetical protein EscherichiacoliO157EcO_18684 [Escherichia coli O157:H7 str. FRIK966] gi|26006914|sp|Q8XBK1|RRMF_ECO57 RecName: Full=Probable rRNA maturation factor YbeY gi|226704000|sp|B5YQL0|RRMF_ECO5E RecName: Full=Probable rRNA maturation factor YbeY gi|12513568|gb|AAG54992.1|AE005245_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13360155|dbj|BAB34120.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187767195|gb|EDU31039.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188013886|gb|EDU52008.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189002868|gb|EDU71854.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189354845|gb|EDU73264.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189363348|gb|EDU81767.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189365375|gb|EDU83791.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189373611|gb|EDU92027.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189375556|gb|EDU93972.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|208728339|gb|EDZ77940.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208733070|gb|EDZ81758.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208737037|gb|EDZ84721.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209158806|gb|ACI36239.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|209776880|gb|ACI86752.1| hypothetical protein ECs0697 [Escherichia coli] gi|209776882|gb|ACI86753.1| hypothetical protein ECs0697 [Escherichia coli] gi|209776886|gb|ACI86755.1| hypothetical protein ECs0697 [Escherichia coli] gi|217322417|gb|EEC30841.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254591222|gb|ACT70583.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|320193065|gb|EFW67705.1| putative metalloprotease [Escherichia coli O157:H7 str. EC1212] gi|326341409|gb|EGD65201.1| putative metalloprotease [Escherichia coli O157:H7 str. 1044] gi|326345811|gb|EGD69550.1| putative metalloprotease [Escherichia coli O157:H7 str. 1125] Length = 155 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQMVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|113460492|ref|YP_718555.1| metal-dependent hydrolase [Haemophilus somnus 129PT] gi|123327121|sp|Q0I1E6|RRMF_HAES1 RecName: Full=Probable rRNA maturation factor gi|112822535|gb|ABI24624.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 154 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 67/113 (59%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D LN YRG DKPTNVLSFP F D ++GD+V+ +++E EA Sbjct: 40 EMTVRIVDEEESHHLNLTYRGKDKPTNVLSFP--FECPDEIELPLIGDLVICRQVVEREA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K H H+I+HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 98 TEQEKPLMAHWAHMIVHGSLHLLGYDHIEDDEAEEMERLETEIMLSLGFTDPY 150 >gi|170767743|ref|ZP_02902196.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|170123231|gb|EDS92162.1| conserved hypothetical protein [Escherichia albertii TW07627] Length = 155 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ V + LV D+ + Sbjct: 6 LDLQLACEDNSGQPEESQFQTWLNAVIPQ----------FQEESEVTIRLV--DTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEQEALEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|67459578|ref|YP_247202.1| putative metalloprotease [Rickettsia felis URRWXCal2] gi|75536024|sp|Q4UK98|RRMF_RICFE RecName: Full=Probable rRNA maturation factor gi|67005111|gb|AAY62037.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2] Length = 167 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/130 (44%), Positives = 76/130 (58%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSL-------- 99 F K ELS++ T++ I TLN ++R I+K TNVLSFP+ D S L Sbjct: 38 FSKIKQFELSILLTNTAEILTLNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDY 97 Query: 100 -MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDI YE+I E+ K FENH +HL+IH LHL+G+DH +D +A +ME LE I Sbjct: 98 IHLGDIAFCYEVIYNESCEQQKNFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEI 157 Query: 159 LEDLGINDPY 168 L GI+ PY Sbjct: 158 LSYFGISSPY 167 >gi|254373021|ref|ZP_04988510.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570748|gb|EDN36402.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 168 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V LS+V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 34 LVADKHHISHAEVNLSIVSNDE--IQQINKQFRNKDKPTNIISFEFEKPQGLP--DDIAN 89 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGYDH DD++A VME LE + Sbjct: 90 DFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQL 149 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 150 LAQLGIANPY 159 >gi|254461073|ref|ZP_05074489.1| conserved hypothetical protein TIGR00043 [Rhodobacterales bacterium HTCC2083] gi|206677662|gb|EDZ42149.1| conserved hypothetical protein TIGR00043 [Rhodobacteraceae bacterium HTCC2083] Length = 162 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 16/162 (9%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E++ W + L TL E K ++ L + + E++++ D RI LN E+R Sbjct: 7 IEDSRWQ-TVDLATLAETAARKTLTQL-----DLDPTVFEIAILACDDTRIAELNTEFRD 60 Query: 77 IDKPTNVLSFPTAFASSD--GCSS--------LMLGDIVLAYEIIEIEANVLGKEFENHL 126 PTNVLS+P+ +SD G LGDI ++Y+ EA K +H Sbjct: 61 KPTPTNVLSWPSDERASDIDGARPEKPVLPMDAELGDIAISYDTCAREAQSANKPLTDHT 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HLIIHG LHLLGYDH+ D DA +ME E IL LG++ PY Sbjct: 121 THLIIHGVLHLLGYDHIRDLDATLMEQTEVLILGTLGVDTPY 162 >gi|51473908|ref|YP_067665.1| putative metalloprotease [Rickettsia typhi str. Wilmington] gi|59799025|sp|Q68W09|RRMF_RICTY RecName: Full=Probable rRNA maturation factor gi|51460220|gb|AAU04183.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 167 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 83/151 (54%), Gaps = 11/151 (7%) Query: 29 RTLCEVVFAKAVSN-LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 R + + + K N L+ +F K ELS++ T++ I TLN ++R I+K TNVLSFP Sbjct: 17 RKINKGLIKKITQNVLVRFDHFDKIKQFELSILLTNTAEILTLNQQFRSIEKATNVLSFP 76 Query: 88 TAFASSDGCSS----------LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 + S + LGDI YE+I E+ K FENH +H++IH LHL Sbjct: 77 NNELNWHNLYSKLEFLYYSDYMHLGDIAFCYEVIYNESCEQQKTFENHFIHMLIHSILHL 136 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +G+DH +D DA +ME LE IL GI PY Sbjct: 137 IGFDHQNDTDANIMESLEIEILSYFGIPSPY 167 >gi|332678363|gb|AEE87492.1| predicted metal-dependent hydrolase [Francisella cf. novicida Fx1] Length = 162 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V LS+V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 28 LVADKHHISHAEVNLSIVSND--EIQQINKQFRNKDKPTNIISFEFEKPQGLP--DDIAN 83 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGYDH DD++A VME LE + Sbjct: 84 DFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQL 143 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 144 LAQLGIANPY 153 >gi|259909114|ref|YP_002649470.1| hypothetical protein YbeY [Erwinia pyrifoliae Ep1/96] gi|224964736|emb|CAX56253.1| conserved uncharacterized protein YbeY [Erwinia pyrifoliae Ep1/96] gi|283479141|emb|CAY75057.1| putative metalloprotease ybeY [Erwinia pyrifoliae DSM 12163] Length = 155 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA Sbjct: 40 EVTIRLVDEAESHQLNHTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K E H H++IHG LHLLGYDH+ D +A ME LE I+ LG DPY Sbjct: 98 AEQEKVLEAHWAHMVIHGSLHLLGYDHIVDDEAEEMESLETEIMLALGYPDPY 150 >gi|78484820|ref|YP_390745.1| hypothetical protein Tcr_0475 [Thiomicrospira crunogena XCL-2] gi|123555910|sp|Q31IF2|RRMF_THICR RecName: Full=Probable rRNA maturation factor gi|78363106|gb|ABB41071.1| Conserved hypothetical protein; UPF0054 [Thiomicrospira crunogena XCL-2] Length = 160 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/166 (39%), Positives = 88/166 (53%), Gaps = 14/166 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD Q+A E DE L T + + V+ L + + EL++ D I+TL Sbjct: 4 LDYQVAAEEV---DEAELPTYEQCLKWVEVALLDDR----LDGETELTIRIVDEDEIQTL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD-----GCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 N +YRG D+ TNVLSFP F + G +GD+V+ +++ EA K E H Sbjct: 57 NRDYRGKDQTTNVLSFP--FENPPVLVDLGEELPYIGDLVICAQVVAQEAKAQHKPLEAH 114 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHL G DHVDD +A ME LE IL DLG + PYE D Sbjct: 115 WAHMVIHGCLHLQGMDHVDDDEAIKMEALEAEILADLGYDSPYESD 160 >gi|332306416|ref|YP_004434267.1| hypothetical protein Glaag_2054 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173745|gb|AEE22999.1| protein of unknown function UPF0054 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 152 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D + LN YRG DKPTNVLSFP F + G S +LGD+V+ ++ EA Sbjct: 39 EITVRIVDKEESQDLNHTYRGKDKPTNVLSFP--FEAPPGLSLNLLGDLVVCASVVADEA 96 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K +H H+I+HG LHLLG+DH+ D +A ME +E IL+ I+DPY+ Sbjct: 97 KEQHKALAHHWAHMIVHGALHLLGFDHITDDEAQQMEAVEVIILKQFSIDDPYQ 150 >gi|89053194|ref|YP_508645.1| hypothetical protein Jann_0703 [Jannaschia sp. CCS1] gi|122499500|sp|Q28UJ2|RRMF_JANSC RecName: Full=Probable rRNA maturation factor gi|88862743|gb|ABD53620.1| protein of unknown function UPF0054 [Jannaschia sp. CCS1] Length = 160 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 10/146 (6%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 LC + + V+ L + + LS++ D RI TLN ++RG PTNVLS+P+ Sbjct: 17 LCGLAQSACVATLTD--LSLDPDDFALSILACDDARIATLNTQFRGKPTPTNVLSWPSED 74 Query: 91 ASSDGCSSLM--------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + + ++ LGD+ LA+E EA GK +H+ HLI+HG LH LG+DH Sbjct: 75 RAPETPGAMPHLSDLAAELGDLALAFETCAREAADGGKPLPDHISHLIVHGLLHCLGFDH 134 Query: 143 VDDKDACVMEGLERSILEDLGINDPY 168 D DA +ME LE IL LG+ DPY Sbjct: 135 ETDADADLMERLETRILARLGVPDPY 160 >gi|15604575|ref|NP_221093.1| putative metalloprotease [Rickettsia prowazekii str. Madrid E] gi|2073493|emb|CAA72455.1| hypothetical protein [Rickettsia prowazekii] gi|3861270|emb|CAA15169.1| unknown [Rickettsia prowazekii] Length = 180 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------- 98 F K ELS++ T++ I TLN ++R I+K TNVLSFP + S Sbjct: 51 FSKIKQFELSILLTNTAEILTLNQQFRSIEKATNVLSFPNNELNWHNLYSKLEFLYYSDY 110 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGDI YE+I E+ K FENH +H++IH LHL+G+DH +D DA +ME LE I Sbjct: 111 MHLGDIAFCYEVIYNESCEQQKTFENHFIHMLIHSILHLIGFDHQNDTDANIMESLEIEI 170 Query: 159 LEDLGINDPY 168 L GI PY Sbjct: 171 LSYFGIPSPY 180 >gi|322833886|ref|YP_004213913.1| hypothetical protein Rahaq_3192 [Rahnella sp. Y9602] gi|321169087|gb|ADW74786.1| protein of unknown function UPF0054 [Rahnella sp. Y9602] Length = 157 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 92/160 (57%), Gaps = 17/160 (10%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV-FTDSHRIE 68 LDLQIA E+A E +T E V + F +E+ V + LV +SH Sbjct: 6 LDLQIACEDAAGLPSENDFQTWLEAVLPQ----------FQEESEVTIRLVDIPESHE-- 53 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG+DKPTNVLSFP F + G +LGD+++ +++E EA KE H H Sbjct: 54 -LNMTYRGMDKPTNVLSFP--FEAPPGMEMPLLGDLIICRQVVEKEAKEQDKELLAHWAH 110 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++IHG LHLLGYDH+ D++A ME +E I++ LG DPY Sbjct: 111 MVIHGSLHLLGYDHIVDEEAEEMESIETEIMQGLGYPDPY 150 >gi|11387300|sp|P57517|RRMF_BUCAI RecName: Full=Probable rRNA maturation factor Length = 155 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 55/136 (40%), Positives = 79/136 (58%), Gaps = 6/136 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 ++ F K + ++ K K+NI +++ D I+ LNF YR +KPTN+LSFP F Sbjct: 21 KLYFKKWIQKILCK----KKNINIITIRIVDEWEIKKLNFNYRKKNKPTNILSFP--FNK 74 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + +LGD+VL IIE E+ K E+H H+ IHG LHLLGYDH ++K+A +ME Sbjct: 75 FIKINYKLLGDLVLCKNIIEKESLKYNKSLESHWAHITIHGTLHLLGYDHQNNKEADIME 134 Query: 153 GLERSILEDLGINDPY 168 LE I+ L P+ Sbjct: 135 RLENKIMLSLNYKKPH 150 >gi|26246634|ref|NP_752674.1| putative metalloprotease [Escherichia coli CFT073] gi|110640881|ref|YP_668609.1| putative metalloprotease [Escherichia coli 536] gi|170681098|ref|YP_001742777.1| putative metalloprotease [Escherichia coli SMS-3-5] gi|191173958|ref|ZP_03035476.1| conserved hypothetical protein [Escherichia coli F11] gi|215485692|ref|YP_002328123.1| putative metalloprotease [Escherichia coli O127:H6 str. E2348/69] gi|227884367|ref|ZP_04002172.1| metal-dependent hydrolase [Escherichia coli 83972] gi|293408784|ref|ZP_06652623.1| metalloprotease [Escherichia coli B354] gi|300989981|ref|ZP_07179057.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 45-1] gi|300996643|ref|ZP_07181501.1| hypothetical protein HMPREF9553_04968 [Escherichia coli MS 200-1] gi|301025207|ref|ZP_07188778.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 69-1] gi|301049851|ref|ZP_07196789.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 185-1] gi|306812917|ref|ZP_07447110.1| putative metalloprotease [Escherichia coli NC101] gi|312965100|ref|ZP_07779337.1| uncharacterized family UPF0054 family protein [Escherichia coli 2362-75] gi|331645816|ref|ZP_08346919.1| putative metalloprotease YbeY [Escherichia coli M605] gi|331656681|ref|ZP_08357643.1| putative metalloprotease YbeY [Escherichia coli TA206] gi|331682077|ref|ZP_08382701.1| putative metalloprotease YbeY [Escherichia coli H299] gi|29428208|sp|Q8FJY3|RRMF_ECOL6 RecName: Full=Probable rRNA maturation factor YbeY gi|123049385|sp|Q0TK21|RRMF_ECOL5 RecName: Full=Probable rRNA maturation factor YbeY gi|226710479|sp|B1LLB0|RRMF_ECOSM RecName: Full=Probable rRNA maturation factor YbeY gi|254807364|sp|B7UKU2|RRMF_ECO27 RecName: Full=Probable rRNA maturation factor YbeY gi|26107033|gb|AAN79217.1|AE016757_121 Hypothetical protein ybeY [Escherichia coli CFT073] gi|110342473|gb|ABG68710.1| hypothetical protein YbeY [Escherichia coli 536] gi|170518816|gb|ACB16994.1| conserved hypothetical protein [Escherichia coli SMS-3-5] gi|190905734|gb|EDV65355.1| conserved hypothetical protein [Escherichia coli F11] gi|215263764|emb|CAS08100.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|222032412|emb|CAP75151.1| metalloprotease ybeY [Escherichia coli LF82] gi|227838453|gb|EEJ48919.1| metal-dependent hydrolase [Escherichia coli 83972] gi|281177807|dbj|BAI54137.1| conserved hypothetical protein [Escherichia coli SE15] gi|291471962|gb|EFF14445.1| metalloprotease [Escherichia coli B354] gi|300298385|gb|EFJ54770.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 185-1] gi|300304472|gb|EFJ58992.1| hypothetical protein HMPREF9553_04968 [Escherichia coli MS 200-1] gi|300396159|gb|EFJ79697.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 69-1] gi|300407256|gb|EFJ90794.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 45-1] gi|305853680|gb|EFM54119.1| putative metalloprotease [Escherichia coli NC101] gi|307552523|gb|ADN45298.1| putative metal-dependent hydrolase YbeY [Escherichia coli ABU 83972] gi|312290191|gb|EFR18074.1| uncharacterized family UPF0054 family protein [Escherichia coli 2362-75] gi|312945199|gb|ADR26026.1| putative metalloprotease [Escherichia coli O83:H1 str. NRG 857C] gi|315292082|gb|EFU51434.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 153-1] gi|315299191|gb|EFU58445.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 16-3] gi|320194165|gb|EFW68797.1| putative metalloprotease [Escherichia coli WV_060327] gi|323191292|gb|EFZ76556.1| hypothetical protein ECRN5871_0581 [Escherichia coli RN587/1] gi|324010386|gb|EGB79605.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 60-1] gi|330910416|gb|EGH38926.1| metal-dependent hydrolase [Escherichia coli AA86] gi|331044568|gb|EGI16695.1| putative metalloprotease YbeY [Escherichia coli M605] gi|331054929|gb|EGI26938.1| putative metalloprotease YbeY [Escherichia coli TA206] gi|331080756|gb|EGI51930.1| putative metalloprotease YbeY [Escherichia coli H299] Length = 155 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME +E I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEAIETEIMLALGYEDPY 150 >gi|292487619|ref|YP_003530491.1| putative metalloprotease ybeY [Erwinia amylovora CFBP1430] gi|292898857|ref|YP_003538226.1| hypothetical protein EAM_1139 [Erwinia amylovora ATCC 49946] gi|291198705|emb|CBJ45814.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291553038|emb|CBA20083.1| putative metalloprotease ybeY [Erwinia amylovora CFBP1430] gi|312171726|emb|CBX79984.1| putative metalloprotease ybeY [Erwinia amylovora ATCC BAA-2158] Length = 155 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E+ + L T E F + + ++ + F E+ V + LV D L Sbjct: 6 LDLQLACES-----QQGLPT--EADFQRWLEAVLPQ--FQSESEVTIRLV--DEAESHHL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG +KPTNVLSFP F + G +LGD+++ +++E EA K E H H++ Sbjct: 55 NHTYRGKEKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEHEAAEQEKALEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH+ D +A ME LE I+ LG DPY Sbjct: 113 IHGSLHLLGYDHIVDDEAEEMESLETEIMLALGYPDPY 150 >gi|300715841|ref|YP_003740644.1| conserved uncharacterized protein YbeY [Erwinia billingiae Eb661] gi|299061677|emb|CAX58793.1| conserved uncharacterized protein YbeY [Erwinia billingiae Eb661] Length = 157 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 15/159 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E A E R E V + F +E+ E+++ D Sbjct: 6 LDLQLACEKPAGLPAESDFRRWLEAVLPQ----------FQEES--EVTVRVVDEAESHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 54 LNHTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEKEAAEQEKPVLAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME +E I+ LG +DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEADEMESIETEIMLALGYDDPY 150 >gi|26007037|sp|O05960|RRMF_RICPR RecName: Full=Probable rRNA maturation factor gi|292572382|gb|ADE30297.1| Putative metal-dependent hydrolase [Rickettsia prowazekii Rp22] Length = 167 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------- 98 F K ELS++ T++ I TLN ++R I+K TNVLSFP + S Sbjct: 38 FSKIKQFELSILLTNTAEILTLNQQFRSIEKATNVLSFPNNELNWHNLYSKLEFLYYSDY 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGDI YE+I E+ K FENH +H++IH LHL+G+DH +D DA +ME LE I Sbjct: 98 MHLGDIAFCYEVIYNESCEQQKTFENHFIHMLIHSILHLIGFDHQNDTDANIMESLEIEI 157 Query: 159 LEDLGINDPY 168 L GI PY Sbjct: 158 LSYFGIPSPY 167 >gi|239947061|ref|ZP_04698814.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921337|gb|EER21361.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 167 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------- 98 F K +ELS++ T++ I TLN ++R I+K TNVLSFP+ + S Sbjct: 38 FSKIKQLELSILLTNTVEILTLNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDY 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGDI YE+I E+ K FENH +HL+IH LHL+G+DH +D +A +ME LE I Sbjct: 98 MHLGDIAFCYEVIYNESCEQQKTFENHFIHLLIHSVLHLIGFDHQNDTEANIMENLEIEI 157 Query: 159 LEDLGINDPY 168 L GI+ PY Sbjct: 158 LSYFGISSPY 167 >gi|171473045|sp|A6V0C7|RRMF_PSEA7 RecName: Full=Probable rRNA maturation factor Length = 160 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A + A E R CE+ + + EL++ D L Sbjct: 5 LDLQVASDAADLPSEAQFRAWCELALRQRAES-------------ELTIRLVDEAEGLEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D TNVLSFP A + +LGD+V+ ++ EA K + H HL+ Sbjct: 52 NSTYRHKDYATNVLSFP-ADVPEEFLDIPLLGDLVICAPVVAREAREQHKPLQAHWAHLV 110 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 111 IHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|283784429|ref|YP_003364294.1| hypothetical protein ROD_06711 [Citrobacter rodentium ICC168] gi|282947883|emb|CBG87445.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 155 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 87/159 (54%), Gaps = 15/159 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A EN A +E +T + F +E V + LV D Sbjct: 6 LDLQLACENNAGLPEEARFQTWLNAAIPQ----------FQEEAEVTIRLV--DEAESHD 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAREQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|163734561|ref|ZP_02142000.1| hypothetical protein RLO149_14078 [Roseobacter litoralis Och 149] gi|161392054|gb|EDQ16384.1| hypothetical protein RLO149_14078 [Roseobacter litoralis Och 149] Length = 166 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 73/127 (57%), Gaps = 12/127 (9%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------------AFASSDGCSSLMLGD 103 E+S + D RI LN ++R TNVLS+P A ++D L LGD Sbjct: 40 EVSYLACDDARITLLNADFREKTTATNVLSWPAVDLAPVIAGAVPAPPTADLTGVLALGD 99 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + +AYE EA L K +H+ HLI+HG LHLLGYDH+ D DA +M+G+E IL +G Sbjct: 100 VAIAYETCLREATDLRKPLADHVTHLIVHGTLHLLGYDHIRDPDATLMQGVEAKILGKMG 159 Query: 164 INDPYEV 170 ++DPY V Sbjct: 160 LDDPYMV 166 >gi|254470656|ref|ZP_05084059.1| diacyglycerol kinase [Pseudovibrio sp. JE062] gi|211959798|gb|EEA94995.1| diacyglycerol kinase [Pseudovibrio sp. JE062] Length = 168 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 61/115 (53%), Positives = 76/115 (66%), Gaps = 1/115 (0%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+SLVFTD I+ LN +R DKPTNVLSFP S + +LGDI++A E ++ E Sbjct: 47 TEVSLVFTDDAHIQELNKMWRQKDKPTNVLSFP-GDDSEEPPFGPLLGDIIIANETVKRE 105 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 A LG FE+HL+HLI+HG LHL GYDH D++A ME ER IL L I DPY+ Sbjct: 106 AVELGIPFEHHLIHLIVHGTLHLFGYDHQIDEEAEEMEAEERLILASLQIPDPYK 160 >gi|296116297|ref|ZP_06834913.1| hypothetical protein GXY_10882 [Gluconacetobacter hansenii ATCC 23769] gi|295977116|gb|EFG83878.1| hypothetical protein GXY_10882 [Gluconacetobacter hansenii ATCC 23769] Length = 192 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 13/165 (7%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVEL------SLVFTDSHRIET 69 V +GD+I + ++ E + +A+ N + V+ + EL ++V D + Sbjct: 18 VPQPPFGDDIDV-SITERRWHRAMPNPAREVQRAVRAAMRELDVSGAVTVVLADDLTVRR 76 Query: 70 LNFEYRGIDKPTNVLSF---PTAFASSDGCSSLML--GDIVLAYEIIEIEANVLGKEFEN 124 LN +RG +KPTNVL+F P +A +D S + L GDI+LA+ +E EA G+ N Sbjct: 77 LNHLHRGRNKPTNVLTFEYAPADYAPTDSGSGIWLWGGDIILAFATVEREARAAGRSVRN 136 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H++HL++HG LHL GYDH DA ME E IL +GI +P++ Sbjct: 137 HMMHLLVHGVLHLSGYDHHHAGDARAMEMEESRILGRMGIPNPWK 181 >gi|182678043|ref|YP_001832189.1| hypothetical protein Bind_1057 [Beijerinckia indica subsp. indica ATCC 9039] gi|238691235|sp|B2IIK7|RRMF_BEII9 RecName: Full=Probable rRNA maturation factor gi|182633926|gb|ACB94700.1| protein of unknown function UPF0054 [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 56/114 (49%), Positives = 76/114 (66%), Gaps = 3/114 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+SL+F D I LN ++RG+DKPTNVLSFP+ D + +LGDI++A+E E Sbjct: 50 AEVSLLFCDDAFIRGLNHQWRGLDKPTNVLSFPS---DEDLEDARLLGDIIIAFETSAGE 106 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K H+ HL++HGFLHL+GYDH + ++A ME +E+ IL DLGI DPY Sbjct: 107 AKAEAKSLAAHVSHLVVHGFLHLIGYDHEEAEEAEEMERMEQVILADLGIADPY 160 >gi|218703992|ref|YP_002411511.1| putative metalloprotease [Escherichia coli UMN026] gi|293403920|ref|ZP_06647914.1| metalloprotease [Escherichia coli FVEC1412] gi|298379695|ref|ZP_06989300.1| metalloprotease ybeY [Escherichia coli FVEC1302] gi|300901172|ref|ZP_07119276.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 198-1] gi|331662026|ref|ZP_08362949.1| putative metalloprotease YbeY [Escherichia coli TA143] gi|226710478|sp|B7N9R4|RRMF_ECOLU RecName: Full=Probable rRNA maturation factor YbeY gi|218431089|emb|CAR11965.1| putative metal-dependent hydrolase [Escherichia coli UMN026] gi|291428506|gb|EFF01531.1| metalloprotease [Escherichia coli FVEC1412] gi|298279393|gb|EFI20901.1| metalloprotease ybeY [Escherichia coli FVEC1302] gi|300355386|gb|EFJ71256.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 198-1] gi|331060448|gb|EGI32412.1| putative metalloprotease YbeY [Escherichia coli TA143] Length = 155 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 90/159 (56%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLIYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|56707741|ref|YP_169637.1| hypothetical protein FTT_0616c [Francisella tularensis subsp. tularensis SCHU S4] gi|110670212|ref|YP_666769.1| hypothetical protein FTF0616c [Francisella tularensis subsp. tularensis FSC198] gi|254370244|ref|ZP_04986250.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874554|ref|ZP_05247264.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|59799004|sp|Q5NH55|RRMF_FRATT RecName: Full=Probable rRNA maturation factor gi|123359556|sp|Q14IK7|RRMF_FRAT1 RecName: Full=Probable rRNA maturation factor gi|56604233|emb|CAG45249.1| cconserved hypothetical protein, UPF0054 family [Francisella tularensis subsp. tularensis SCHU S4] gi|110320545|emb|CAL08632.1| cconserved hypothetical protein, UPF0054 family [Francisella tularensis subsp. tularensis FSC198] gi|151568488|gb|EDN34142.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254840553|gb|EET18989.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 168 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V L++V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 34 LVANKHHISHAEVNLNIVSNDE--IQQINKQFRNKDKPTNIISFEFEKPQGLP--DDIAN 89 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGYDH DD++A VME LE + Sbjct: 90 DFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQL 149 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 150 LAQLGIANPY 159 >gi|254490268|ref|ZP_05103457.1| conserved hypothetical protein TIGR00043, putative [Methylophaga thiooxidans DMS010] gi|224464401|gb|EEF80661.1| conserved hypothetical protein TIGR00043, putative [Methylophaga thiooxydans DMS010] Length = 155 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/119 (46%), Positives = 70/119 (58%), Gaps = 2/119 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 E ELS+ D LN +YRG PTNVLSFP F S +LGD+V+ I+ Sbjct: 33 EEDCELSIRLVDEDESAELNSQYRGKTGPTNVLSFP--FDSDIALEPTLLGDLVICVPIV 90 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 E EA K E+H H++IHG LHLLGYDH++D +A ME LE IL + I +PYE+ Sbjct: 91 EKEAQQQDKIAEHHWAHMVIHGCLHLLGYDHIEDDEAEEMETLEIQILHKMNITNPYEL 149 >gi|157804110|ref|YP_001492659.1| putative metalloprotease [Rickettsia canadensis str. McKiel] gi|166227281|sp|A8EZU1|RRMF_RICCK RecName: Full=Probable rRNA maturation factor gi|157785373|gb|ABV73874.1| hypothetical protein A1E_04765 [Rickettsia canadensis str. McKiel] Length = 172 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 58/135 (42%), Positives = 75/135 (55%), Gaps = 15/135 (11%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSS--------- 98 F K ELS++ T++ I TLN ++R IDK TNVLSFP+ D C S Sbjct: 38 FSKIKQFELSILLTNTAEILTLNKQFRNIDKATNVLSFPSNKLNWQDLCFSNVSPKLELL 97 Query: 99 -----LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 + LGDI YE+I E+ K ENH +HL+IH LHL+G+DH +D +A +ME Sbjct: 98 IGYDYMHLGDIAFCYEVIYNESYEQQKTSENHFIHLLIHSILHLIGFDHQNDTEANIMEN 157 Query: 154 LERSILEDLGINDPY 168 LE IL GI PY Sbjct: 158 LEIEILSYFGIASPY 172 >gi|56460051|ref|YP_155332.1| metal-dependent hydrolase [Idiomarina loihiensis L2TR] gi|59799006|sp|Q5QYC3|RRMF_IDILO RecName: Full=Probable rRNA maturation factor gi|56179061|gb|AAV81783.1| Predicted metal-dependent hydrolase [Idiomarina loihiensis L2TR] Length = 163 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 54/124 (43%), Positives = 76/124 (61%), Gaps = 4/124 (3%) Query: 49 FVKEN--IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106 +++EN VEL++ + LN E+R D TNVLSFP F S +LGD+V+ Sbjct: 33 YLQENDKAVELTVRIAALEEAQQLNNEFRNKDYATNVLSFP--FNSPVELPVTLLGDLVI 90 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 ++E EA K +H H++IHG LHLLGYDH++D +A ME +ER+IL LGI+D Sbjct: 91 CQSVVEREAEEQQKSAIDHWTHMVIHGTLHLLGYDHIEDDEAEEMEQIERNILASLGISD 150 Query: 167 PYEV 170 PY+ Sbjct: 151 PYQT 154 >gi|224456812|ref|ZP_03665285.1| hypothetical protein FtultM_03352 [Francisella tularensis subsp. tularensis MA00-2987] gi|282158912|gb|ADA78303.1| hypothetical protein NE061598_03525 [Francisella tularensis subsp. tularensis NE061598] Length = 162 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V L++V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 28 LVANKHHISHAEVNLNIVSND--EIQQINKQFRNKDKPTNIISFEFEKPQGLP--DDIAN 83 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGYDH DD++A VME LE + Sbjct: 84 DFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQL 143 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 144 LAQLGIANPY 153 >gi|146279876|ref|YP_001170034.1| hypothetical protein Rsph17025_3874 [Rhodobacter sphaeroides ATCC 17025] gi|145558117|gb|ABP72729.1| hypothetical protein Rsph17025_3874 [Rhodobacter sphaeroides ATCC 17025] Length = 167 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 86/169 (50%), Gaps = 27/169 (15%) Query: 17 VENALWGDEIHLRTLC----EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +E+ W +E+ L L E FA +L +G+ L ++ D RI LN Sbjct: 9 IEDGRW-EELDLPALATRAAEATFAGL--DLRPEGFI-------LVVMGCDDARIAELNG 58 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCS-------------SLMLGDIVLAYEIIEIEANVLG 119 +R KPTNVLS+P+ +SD LGDI +AYE EA G Sbjct: 59 TFRQKGKPTNVLSWPSEERASDEAGVAPEPPEPGEPEDPEHLGDIAIAYETCAREAAEQG 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H+ HL++HG LHLLGYDHVD+ DA +ME E IL LG+ DPY Sbjct: 119 KPVPDHVTHLLVHGILHLLGYDHVDEADADLMEATETRILAGLGVPDPY 167 >gi|254374471|ref|ZP_04989952.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151572190|gb|EDN37844.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 168 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V L++V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 34 LVADKHHISHAEVNLNIVSNDE--IQQINKQFRNKDKPTNIISFEFEKPQGLP--DDIAN 89 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGYDH DD++A VME LE + Sbjct: 90 DFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQL 149 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 150 LAQLGIANPY 159 >gi|229587097|ref|YP_002845598.1| putative metalloprotease [Rickettsia africae ESF-5] gi|259645703|sp|C3PLL5|RRMF_RICAE RecName: Full=Probable rRNA maturation factor gi|228022147|gb|ACP53855.1| Putative metal-dependent hydrolase [Rickettsia africae ESF-5] Length = 167 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------AFASSDGCSS 98 F K ELS++ T++ I TLN ++R I+K TNVLSFP+ D Sbjct: 38 FSKIKQFELSILLTNAAEILTLNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLDDSDY 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGDI YE+I E+ K FENH +HL+IH LHL+G+DH +D +A +ME LE I Sbjct: 98 MHLGDIAFCYEVIYNESCEQHKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEI 157 Query: 159 LEDLGINDPY 168 L GI PY Sbjct: 158 LSYFGIFPPY 167 >gi|118497656|ref|YP_898706.1| hypothetical protein FTN_1065 [Francisella tularensis subsp. novicida U112] gi|194323628|ref|ZP_03057404.1| conserved hypothetical protein, putative [Francisella tularensis subsp. novicida FTE] gi|208779717|ref|ZP_03247061.1| conserved hypothetical protein [Francisella novicida FTG] gi|145572751|sp|A0Q6T7|RRMF_FRATN RecName: Full=Probable rRNA maturation factor gi|118423562|gb|ABK89952.1| conserved protein of unknown function [Francisella novicida U112] gi|194321992|gb|EDX19474.1| conserved hypothetical protein, putative [Francisella tularensis subsp. novicida FTE] gi|208744172|gb|EDZ90472.1| conserved hypothetical protein [Francisella novicida FTG] Length = 162 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V L++V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 28 LVADKHHISHAEVNLNIVSND--EIQQINKQFRNKDKPTNIISFEFEKPQGLP--DDIAN 83 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGYDH DD++A VME LE + Sbjct: 84 DFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQL 143 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 144 LAQLGIANPY 153 >gi|157826181|ref|YP_001493901.1| putative metalloprotease [Rickettsia akari str. Hartford] gi|166229073|sp|A8GPR8|RRMF_RICAH RecName: Full=Probable rRNA maturation factor gi|157800139|gb|ABV75393.1| hypothetical protein A1C_05790 [Rickettsia akari str. Hartford] Length = 167 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------- 98 F K ELS++ T++ I TLN ++R I+K TNVL+FP+ + S Sbjct: 38 FSKIKQFELSMLLTNTAEILTLNKQFRNIEKATNVLAFPSNELNWQDLYSKLEFLGDSDY 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGD+ YE+I E+ K FENH +HL+IH LHL+G+DH +D +A +ME LE I Sbjct: 98 MHLGDVAFCYEVIYNESCEQQKTFENHFIHLLIHSILHLIGFDHQNDTEAHIMENLEIEI 157 Query: 159 LEDLGINDPY 168 L GI+ PY Sbjct: 158 LSYFGISSPY 167 >gi|167010863|ref|ZP_02275794.1| hypothetical protein Ftulh_09158 [Francisella tularensis subsp. holarctica FSC200] gi|254369232|ref|ZP_04985244.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|145558840|sp|Q2A3U8|RRMF_FRATH RecName: Full=Probable rRNA maturation factor gi|157122182|gb|EDO66322.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 168 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V L++V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 34 LVADKHHISHAEVNLNIVSNDE--IQQINKQFRNKDKPTNIISFEFEKPQGLP--DDIAN 89 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGYDH DD++A VME LE + Sbjct: 90 DFLGDIVIAPAVLENEAKEQNKEINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQL 149 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 150 LAQLGIANPY 159 >gi|87199002|ref|YP_496259.1| hypothetical protein Saro_0980 [Novosphingobium aromaticivorans DSM 12444] gi|123490218|sp|Q2G9P8|RRMF_NOVAD RecName: Full=Probable rRNA maturation factor gi|87134683|gb|ABD25425.1| protein of unknown function UPF0054 [Novosphingobium aromaticivorans DSM 12444] Length = 167 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 14/173 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ P L++ I + +WGD I ++ A + EN++ +S+V D Sbjct: 1 MSAPILEMDI---DPVWGDAIDWE---DIASRAAEAAAKVAPELAHENLL-VSVVLADDD 53 Query: 66 RIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 + LN ++R DKPTNVLSFP A++D + MLGD++LA+ + EA G Sbjct: 54 EVHALNKQWRAKDKPTNVLSFPMLSREEVLHAAADEGAPGMLGDMILAHGVCTREAAEKG 113 Query: 120 KEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYEVD 171 E H HL++HG LHL GYDH + + +A ME LER L +GI DPY V+ Sbjct: 114 VSVETHATHLVVHGLLHLAGYDHELGEAEAEEMENLERKALALMGIADPYAVE 166 >gi|126727645|ref|ZP_01743477.1| hypothetical protein RB2150_15740 [Rhodobacterales bacterium HTCC2150] gi|126703061|gb|EBA02162.1| hypothetical protein RB2150_15740 [Rhodobacterales bacterium HTCC2150] Length = 188 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 12/124 (9%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM------------LGDI 104 +S++ D +I TLN ++RG PTNVLS+P+ + LGDI Sbjct: 51 ISVLACDDAKIATLNADFRGKPTPTNVLSWPSEERGVEVAGDTPELPDIGQEIPYELGDI 110 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++++ EA V FE H++HL+IHG LHLLGYDH+ DKDA +MEG+E +L LG+ Sbjct: 111 AISFDTCLQEAKVSNTPFEQHVLHLMIHGTLHLLGYDHIFDKDAALMEGIETEVLATLGV 170 Query: 165 NDPY 168 DPY Sbjct: 171 PDPY 174 >gi|114778655|ref|ZP_01453471.1| Predicted metal-dependent hydrolase [Mariprofundus ferrooxydans PV-1] gi|114551120|gb|EAU53681.1| Predicted metal-dependent hydrolase [Mariprofundus ferrooxydans PV-1] Length = 159 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 2/133 (1%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 A AV S F E + L + F + LN ++RG+D T+VLSFP S Sbjct: 24 IAAAVQAACSVAGFQNEPM--LCIRFAGDAEVRELNSQWRGLDCVTDVLSFPMQDDSDAI 81 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + LGDI LA ++ EA LG +H++HLI+H LHLL YDH+DD++A M+ LE Sbjct: 82 DPNQSLGDIALALPFVQQEAGRLGLPQADHILHLIVHATLHLLDYDHIDDEEAAQMQQLE 141 Query: 156 RSILEDLGINDPY 168 R ++ LG++DPY Sbjct: 142 RQAMQQLGLHDPY 154 >gi|331005427|ref|ZP_08328807.1| A heat shock protein involved in translation [gamma proteobacterium IMCC1989] gi|330420760|gb|EGG95046.1| A heat shock protein involved in translation [gamma proteobacterium IMCC1989] Length = 177 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 5/128 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L++K V+ EL++ D + LN +YR DKPTNVLSFP D +LG Sbjct: 50 LLNKPSLVQ---AELTIRLVDEPESQQLNNDYRQKDKPTNVLSFPADL--PDIVDLPLLG 104 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 D+++ ++ EA K ++H H+++HG LHLLGYDH+D+ DA +ME +E +L + Sbjct: 105 DLIICAPVVIKEAEEQQKPLQSHWAHMVVHGTLHLLGYDHIDENDANIMEAIETDVLAAM 164 Query: 163 GINDPYEV 170 GI PY V Sbjct: 165 GIACPYTV 172 >gi|89256242|ref|YP_513604.1| hypothetical protein FTL_0884 [Francisella tularensis subsp. holarctica LVS] gi|89144073|emb|CAJ79323.1| cconserved hypothetical protein, UPF0054 family [Francisella tularensis subsp. holarctica LVS] Length = 173 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V L++V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 39 LVADKHHISHAEVNLNIVSNDE--IQQINKQFRNKDKPTNIISFEFEKPQGLP--DDIAN 94 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGYDH DD++A VME LE + Sbjct: 95 DFLGDIVIAPAVLENEAKEQNKEINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQL 154 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 155 LAQLGIANPY 164 >gi|115314700|ref|YP_763423.1| hypothetical protein FTH_0870 [Francisella tularensis subsp. holarctica OSU18] gi|156502302|ref|YP_001428367.1| hypothetical protein FTA_0935 [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953584|ref|ZP_06558205.1| hypothetical protein FtulhU_04454 [Francisella tularensis subsp. holarctica URFT1] gi|295313085|ref|ZP_06803775.1| hypothetical protein FtulhU_04439 [Francisella tularensis subsp. holarctica URFT1] gi|122325277|sp|Q0BM98|RRMF_FRATO RecName: Full=Probable rRNA maturation factor gi|171769928|sp|A7NBQ8|RRMF_FRATF RecName: Full=Probable rRNA maturation factor gi|115129599|gb|ABI82786.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|156252905|gb|ABU61411.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 162 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V L++V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 28 LVADKHHISHAEVNLNIVSND--EIQQINKQFRNKDKPTNIISFEFEKPQGLP--DDIAN 83 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGYDH DD++A VME LE + Sbjct: 84 DFLGDIVIAPAVLENEAKEQNKEINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQL 143 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 144 LAQLGIANPY 153 >gi|197106913|ref|YP_002132290.1| hypothetical protein PHZ_c3452 [Phenylobacterium zucineum HLK1] gi|196480333|gb|ACG79861.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 154 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 5/114 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++L+ D + LN +RG D TNVLSFP LGD+ LA + EA Sbjct: 40 VTLLLADDAAVRELNARFRGKDSATNVLSFPAPP-----NPERHLGDVALACGVCAREAA 94 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GK +HL HL++HG LHLLGYDH+ + +A MEGLER IL LG+ DPY V Sbjct: 95 EQGKPLAHHLQHLVVHGVLHLLGYDHMREDEAEAMEGLERDILAGLGVPDPYAV 148 >gi|218688476|ref|YP_002396688.1| putative metalloprotease [Escherichia coli ED1a] gi|254807366|sp|B7MPH5|RRMF_ECO81 RecName: Full=Probable rRNA maturation factor YbeY gi|218426040|emb|CAR06857.1| putative metal-dependent hydrolase [Escherichia coli ED1a] Length = 155 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ D+ Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDTAESHC 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+++ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLIICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME +E I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEAIETEIMLALGYEDPY 150 >gi|238897293|ref|YP_002922970.1| putative metal-dependent hydrolase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259585969|sp|C4K8I5|RRMF_HAMD5 RecName: Full=Probable rRNA maturation factor gi|229465048|gb|ACQ66822.1| putative metal-dependent hydrolase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 151 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D LNF+YR IDKPTNVLSFP F S +LGD+++ +I+E EA Sbjct: 40 EVTIRLVDEIESRQLNFQYRQIDKPTNVLSFP--FISPVQVPLPLLGDLIICRQIVEKEA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + K H H+++HG LHLLGYDH+ + DA ME +E I+ LG +PY+ Sbjct: 98 VLQKKALWAHWAHMVVHGALHLLGYDHILNDDAKKMESIETEIMMYLGYPNPYD 151 >gi|254496479|ref|ZP_05109355.1| metal dependent hydrolase [Legionella drancourtii LLAP12] gi|254354296|gb|EET12955.1| metal dependent hydrolase [Legionella drancourtii LLAP12] Length = 158 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 3/132 (2%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 V++L + Y K EL++ F + I LN YR +KPTNVL+FP+ Sbjct: 25 VASLALRDYQKK---AELTVRFVNHEEITYLNNTYRKKNKPTNVLAFPSELPLEIQLECP 81 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD+++ +++ E+N L K E H ++IHG LHLLGYDH+ D+DA VM+ +E +L Sbjct: 82 LLGDVIICPDVLLAESNELNKTLEAHWSLILIHGILHLLGYDHIKDEDAAVMQSIEIKLL 141 Query: 160 EDLGINDPYEVD 171 +LG +PY+ + Sbjct: 142 AELGYANPYDAE 153 >gi|15893065|ref|NP_360779.1| putative metalloprotease [Rickettsia conorii str. Malish 7] gi|238650628|ref|YP_002916480.1| putative metalloprotease [Rickettsia peacockii str. Rustic] gi|26006916|sp|Q92GI1|RRMF_RICCN RecName: Full=Probable rRNA maturation factor gi|259646950|sp|C4K1I1|RRMF_RICPU RecName: Full=Probable rRNA maturation factor gi|15620268|gb|AAL03680.1| unknown [Rickettsia conorii str. Malish 7] gi|238624726|gb|ACR47432.1| putative metalloprotease [Rickettsia peacockii str. Rustic] Length = 167 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 75/130 (57%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------- 98 F K ELS++ T++ I TLN ++R I+K TNVLSFP+ + S Sbjct: 38 FSKIKQFELSILLTNAAEILTLNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDY 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGDI YE+I E+ K FENH +HL+IH LHL+G+DH +D +A +ME LE I Sbjct: 98 MHLGDIAFCYEVIYNESCEQHKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEI 157 Query: 159 LEDLGINDPY 168 L GI PY Sbjct: 158 LSYFGIFPPY 167 >gi|328675995|gb|AEB28670.1| hypothetical protein FN3523_0813 [Francisella cf. novicida 3523] Length = 162 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----CSS 98 L++ + + V +++V D I+ +N ++R DKPTN++SF F G + Sbjct: 28 LVADKHNISHAEVNVNIVSND--EIQQINKQFRNKDKPTNIISF--EFEKPQGLPEDIAD 83 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA GKE +H H+ IHG LHLLGYDH DD++A VME LE + Sbjct: 84 DFLGDIVIAPAVLEKEAKEQGKELNHHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQL 143 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 144 LAQLGIANPY 153 >gi|87119368|ref|ZP_01075266.1| hypothetical protein MED121_13900 [Marinomonas sp. MED121] gi|86165759|gb|EAQ67026.1| hypothetical protein MED121_13900 [Marinomonas sp. MED121] Length = 154 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ D + LN +YRG DK TNVLSFP F DG +LGD+V+ +++E EA Sbjct: 40 ELTVRIVDEEESQNLNHQYRGKDKSTNVLSFP--FEVPDGIELPLLGDLVICRQVVEKEA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K+ +H H++IHG LHL G+DH+ + DA ME LE SIL L I +PY Sbjct: 98 VEQNKKLFHHWAHMVIHGTLHLRGFDHIKEDDAQEMESLEISILGQLDIPNPY 150 >gi|117622868|ref|YP_851781.1| putative metalloprotease [Escherichia coli APEC O1] gi|145558845|sp|A1A8S7|RRMF_ECOK1 RecName: Full=Probable rRNA maturation factor YbeY gi|115511992|gb|ABJ00067.1| putative metal-dependent hydrolase [Escherichia coli APEC O1] Length = 155 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/159 (40%), Positives = 89/159 (55%), Gaps = 15/159 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + F +E+ E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ----------FQEES--EVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ L DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALDYEDPY 150 >gi|312963221|ref|ZP_07777705.1| metalloprotease [Pseudomonas fluorescens WH6] gi|311282487|gb|EFQ61084.1| metalloprotease [Pseudomonas fluorescens WH6] Length = 152 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/116 (46%), Positives = 69/116 (59%), Gaps = 1/116 (0%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ D LN +R D TNVLSFP A + +LGD+V+ ++E EA Sbjct: 36 ELTIRLVDEPEGRELNRTWRQKDYATNVLSFP-ADVPDELLDIPLLGDLVICVAVVEREA 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL+IHG LHLLGYDH+DD +A ME LER++L +LG DPY D Sbjct: 95 KEQGKALEAHWAHLVIHGCLHLLGYDHIDDDEAEEMEALERTLLAELGHPDPYADD 150 >gi|226943046|ref|YP_002798119.1| putative metalloprotease [Azotobacter vinelandii DJ] gi|259710170|sp|C1DMW4|RRMF_AZOVD RecName: Full=Probable rRNA maturation factor gi|226717973|gb|ACO77144.1| conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 162 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 85/162 (52%), Gaps = 16/162 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A L E R CE+ + ++ EL++ D L Sbjct: 4 LDLQVASVRPLPA-EDDFRRWCELALRQRSAD------------SELTIRLVDEEEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 N +R D PTNVLSFP +G + +LGD+V+ ++E EA K + H HL Sbjct: 51 NRTWRHKDYPTNVLSFPAEV--PEGLLDIPLLGDLVICVPVVEREAAEQDKAADAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH++D +A ME LER +L +LG DPY+ D Sbjct: 109 VIHGCLHLLGYDHIEDAEAEEMESLERDLLAELGYPDPYDGD 150 >gi|119775709|ref|YP_928449.1| putative metalloprotease [Shewanella amazonensis SB2B] gi|145572772|sp|A1S8S3|RRMF_SHEAM RecName: Full=Probable rRNA maturation factor gi|119768209|gb|ABM00780.1| protein of unknown function UPF0054 [Shewanella amazonensis SB2B] Length = 153 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 83/159 (52%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ AV E T V + EL++ D+ + L Sbjct: 7 LDLQFAVNPGNLPTEAEFETWVRVALGDTLDE------------AELTIRIVDATESQQL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G +LGD+V+ ++E EA K E H H++ Sbjct: 55 NRDYRGKDKPTNVLSFP--FEAPPGMELPLLGDLVICASVVENEALEQHKALEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH+DD +A ME LE ++L LG DPY+ Sbjct: 113 VHGCLHLLGYDHIDDAEAEEMEALETTLLTGLGYPDPYK 151 >gi|84502866|ref|ZP_01000979.1| hypothetical protein OB2597_14786 [Oceanicola batsensis HTCC2597] gi|84388849|gb|EAQ01719.1| hypothetical protein OB2597_14786 [Oceanicola batsensis HTCC2597] Length = 164 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 10/123 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----------LGDIV 105 E+SL+ D RI LN ++RG PTNVLS+P+ +++ + LGDI Sbjct: 41 EISLLACDDARIAALNGDFRGRRAPTNVLSWPSEERAAEAPGQVPTPPDPDGDPELGDIA 100 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A+E + EA G+ +H+ HLI+H LHLLGYDH D DA +MEG E IL +G+ Sbjct: 101 IAFETCDREAREAGRPMADHVTHLIVHATLHLLGYDHESDLDATLMEGSEVEILGKMGLP 160 Query: 166 DPY 168 +PY Sbjct: 161 NPY 163 >gi|254516560|ref|ZP_05128619.1| putative metalloprotease H16_A0526 [gamma proteobacterium NOR5-3] gi|219674983|gb|EED31350.1| putative metalloprotease H16_A0526 [gamma proteobacterium NOR5-3] Length = 163 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E +L D+ ++ LN +YRG D+PTNVLSFP + + +LGDIV+ +++ EA Sbjct: 40 EAALRIVDAKEMQQLNAQYRGKDRPTNVLSFPADLPAD--VTLDLLGDIVICAPVVQEEA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK H H++IHG LHLLG+DH D +A ME LE L LG PY+ D Sbjct: 98 ATQGKPLAAHWDHMLIHGVLHLLGFDHESDAEATHMELLETQALATLGWPCPYQAD 153 >gi|254787741|ref|YP_003075170.1| hypothetical protein TERTU_3876 [Teredinibacter turnerae T7901] gi|237685656|gb|ACR12920.1| conserved hypothetical protein TIGR00043 [Teredinibacter turnerae T7901] Length = 155 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 80/162 (49%), Gaps = 13/162 (8%) Query: 10 RLDLQIA--VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +LD Q A VE + DE L + VFA F + NI + D Sbjct: 4 QLDFQNASTVETSAMPDERDLLSWLNAVFAS------QPATFTEPNIC---VRIVDEGES 54 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 E LN YRG PTNVLSFP G +LGD+V+ +++ EA K H Sbjct: 55 EELNSTYRGKHSPTNVLSFPADLPP--GVDIELLGDLVICAQVVAREAEEQAKAPAAHWA 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+++HG LHLLGYDH++D +A ME LE IL+ L PYE Sbjct: 113 HMVVHGCLHLLGYDHIEDDEADAMEALETKILQALDFPPPYE 154 >gi|157964881|ref|YP_001499705.1| putative metalloprotease [Rickettsia massiliae MTU5] gi|157844657|gb|ABV85158.1| Putative metal-dependent hydrolase [Rickettsia massiliae MTU5] Length = 177 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------- 98 F K ELS++ T+ I TLN ++R I+K TNVLSFP+ + S Sbjct: 48 FSKIKQCELSILLTNVAEILTLNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDY 107 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGDI YE+I E+ K FENH +HL+IH LHL+G+DH +D +A +ME LE I Sbjct: 108 MHLGDIAFCYEVIYNESCEQQKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEI 167 Query: 159 LEDLGINDPY 168 L GI PY Sbjct: 168 LSYFGIFSPY 177 >gi|149192274|ref|ZP_01870486.1| hypothetical protein VSAK1_11415 [Vibrio shilonii AK1] gi|148833889|gb|EDL50914.1| hypothetical protein VSAK1_11415 [Vibrio shilonii AK1] Length = 154 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 90/162 (55%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIAVE+ E L + A + K + EL++ D + Sbjct: 4 ELDLQIAVES-----EQGLPS------ADEFQGWLDKTITPFQQDAELTIRIVDEEESQQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNRDYRGKDKPTNVLSFP--FEAPPGVEMDLLGDMIICRQVVEKEAIEQSKPLIAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I+ D+G +DPY V+ Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLDMGFDDPYLVE 152 >gi|34581258|ref|ZP_00142738.1| hypothetical protein [Rickettsia sibirica 246] gi|28262643|gb|EAA26147.1| unknown [Rickettsia sibirica 246] Length = 167 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 75/130 (57%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------- 98 F K ELS++ T++ I TLN ++R I+K TNVLSFP+ + S Sbjct: 38 FSKIKQFELSILLTNAAEILTLNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDY 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGDI YE+I E+ K FENH +HL+IH LHL+G+DH +D +A +ME LE I Sbjct: 98 MHLGDIAFCYEVIYNESCEQHKTFENHFIHLLIHSILHLIGFDHQNDTEANIMEDLEIEI 157 Query: 159 LEDLGINDPY 168 L GI PY Sbjct: 158 LSYFGIFPPY 167 >gi|134302076|ref|YP_001122045.1| hypothetical protein FTW_1112 [Francisella tularensis subsp. tularensis WY96-3418] gi|166228884|sp|A4IYC3|RRMF_FRATW RecName: Full=Probable rRNA maturation factor gi|134049853|gb|ABO46924.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 162 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V L++V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 28 LVADKHHISHAEVNLNIVSND--EIQQINKQFRNKDKPTNIISFKFEKPQGLP--DDIAN 83 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGY+H DD++A VME LE + Sbjct: 84 DFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYNHQDDQEAEVMENLEIQL 143 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 144 LAQLGIANPY 153 >gi|254450088|ref|ZP_05063525.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 238] gi|198264494|gb|EDY88764.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 238] Length = 156 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 75/133 (56%), Gaps = 10/133 (7%) Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGCSSLM--- 100 G ++ E+SL+ D RI LN ++R PTNVLS+P+ A +DG + Sbjct: 23 SGVGLEAAAFEISLLACDDARICVLNADFRQKGTPTNVLSWPSNERGAEADGDMPVQPQL 82 Query: 101 -----LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LGDI ++Y+ EA G F +H+ HLI+HG LHLLG+DH+ D D +MEGLE Sbjct: 83 PQDTELGDIAISYDTCAREAAQSGTPFADHVTHLIVHGTLHLLGFDHLRDLDGALMEGLE 142 Query: 156 RSILEDLGINDPY 168 IL L I DPY Sbjct: 143 TEILGKLDIADPY 155 >gi|254467206|ref|ZP_05080617.1| conserved hypothetical protein TIGR00043 [Rhodobacterales bacterium Y4I] gi|206688114|gb|EDZ48596.1| conserved hypothetical protein TIGR00043 [Rhodobacterales bacterium Y4I] Length = 170 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/136 (40%), Positives = 78/136 (57%), Gaps = 12/136 (8%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGCSS------- 98 + + + E+SL+ D I LN E+R PTNVLS+P A +DG + Sbjct: 32 FGLDAEMCEISLLGCDDAEIAGLNAEFREKPVPTNVLSWPAEERAADTDGGTPVPPEPDF 91 Query: 99 ---LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + LGDI ++Y EA+ G+ +H HLI+HG LHLLGYDH+ D+DA +MEG+E Sbjct: 92 TGEIPLGDIAISYGTCAREASEAGRTLADHARHLIVHGTLHLLGYDHIRDRDAALMEGIE 151 Query: 156 RSILEDLGINDPYEVD 171 IL +GI +PY V+ Sbjct: 152 VLILGKMGIANPYIVE 167 >gi|157826441|ref|YP_001495505.1| putative metalloprotease [Rickettsia bellii OSU 85-389] gi|166229380|sp|A8GUH2|RRMF_RICB8 RecName: Full=Probable rRNA maturation factor gi|157801745|gb|ABV78468.1| hypothetical protein A1I_00310 [Rickettsia bellii OSU 85-389] Length = 183 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 76/135 (56%), Gaps = 22/135 (16%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--------AFASSDGCSS--------- 98 ELS++ T++ I TLN ++R I+K TNVLSFP F+ ++ SS Sbjct: 45 ELSILLTNNEEILTLNKQFRNIEKATNVLSFPANELNWQDLRFSGNEIASSNKPIILENL 104 Query: 99 -----LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 + LGDI Y++I E+ K FENH +HL+IH LHL+G+DH +D + +ME Sbjct: 105 GDSDYMHLGDIAFCYDVIYNESYEQQKTFENHFIHLLIHSILHLIGFDHQNDTETKIMEN 164 Query: 154 LERSILEDLGINDPY 168 LE IL GI+ PY Sbjct: 165 LEIEILAHFGISSPY 179 >gi|157146731|ref|YP_001454050.1| putative metalloprotease [Citrobacter koseri ATCC BAA-895] gi|166228386|sp|A8AJF1|RRMF_CITK8 RecName: Full=Probable rRNA maturation factor gi|157083936|gb|ABV13614.1| hypothetical protein CKO_02504 [Citrobacter koseri ATCC BAA-895] Length = 155 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E+ H E F ++ +I + F +E+ V + LV D L Sbjct: 6 LDLQLACED-------HSGLPEESQFQTWLNAVIPQ--FQEESEVTIRLV--DEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGMEMPLLGDLIICRQVVEQEAKEQDKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|317047310|ref|YP_004114958.1| hypothetical protein Pat9b_1080 [Pantoea sp. At-9b] gi|316948927|gb|ADU68402.1| protein of unknown function UPF0054 [Pantoea sp. At-9b] Length = 157 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A + E E F + + ++ F E+ V + LV D L Sbjct: 6 LDLQLACAESQGLPE-------EAAFQRWLEAAVTP--FQPESEVTIRLV--DEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAVEQGKSLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGTLHLLGYDHIEDDEAEEMEALETEIMLALGYPDPY 150 >gi|83648012|ref|YP_436447.1| metal-dependent hydrolase [Hahella chejuensis KCTC 2396] gi|123531265|sp|Q2SBF2|RRMF_HAHCH RecName: Full=Probable rRNA maturation factor gi|83636055|gb|ABC32022.1| predicted metal-dependent hydrolase [Hahella chejuensis KCTC 2396] Length = 156 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 15/158 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+QIA E A E L +++A+A + E+++ D+ L Sbjct: 5 VDIQIASEEADLPSEEQL-----ILWAQAA--------LRETGDREVTIRIVDAEESREL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G + +LGD+V+ ++ EA K H H++ Sbjct: 52 NAQYRGKDKPTNVLSFP--FENPPGLTLPLLGDLVICAPVVFNEAVEQQKTAAAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHL GYDH+ D++A VME LE ++ LG PY Sbjct: 110 IHGMLHLQGYDHIIDEEAEVMESLETELVTSLGFPPPY 147 >gi|238762865|ref|ZP_04623833.1| metalloprotease [Yersinia kristensenii ATCC 33638] gi|238698876|gb|EEP91625.1| metalloprotease [Yersinia kristensenii ATCC 33638] Length = 130 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E+++ D LN YRG DKPTNVLSFP F + +LGD+++ +++ Sbjct: 9 QEVSEVTIRVVDEAESHELNLTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLIICRQVV 66 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E EA K H H+++HG LHLLGYDH+ D +A ME +E I+++LG DPY Sbjct: 67 EQEAVEQEKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQNLGYPDPY 123 >gi|123443202|ref|YP_001007176.1| putative metalloprotease [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160872|ref|YP_004297449.1| putative metalloprotease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|145572776|sp|A1JQ74|RRMF_YERE8 RecName: Full=Probable rRNA maturation factor gi|122090163|emb|CAL13026.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604775|emb|CBY26273.1| metal-dependent hydrolase [Yersinia enterocolitica subsp. palearctica Y11] gi|325665102|gb|ADZ41746.1| putative metalloprotease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863404|emb|CBX73526.1| putative metalloprotease YE2987 [Yersinia enterocolitica W22703] Length = 157 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E+++ D LN YRG DKPTNVLSFP F + +LGD+++ +++ Sbjct: 36 QEVSEVTIRVVDEAESHELNLTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLIICRQVV 93 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E EA K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 94 EQEAVEQEKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 150 >gi|332993748|gb|AEF03803.1| hypothetical protein ambt_11410 [Alteromonas sp. SN2] Length = 155 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/141 (45%), Positives = 82/141 (58%), Gaps = 9/141 (6%) Query: 36 FAKAVSNL-----ISKGYFVKENI--VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 AKA+ +L + V EN E+++ FTD +TLN EYRG DKPTNVLSFP Sbjct: 17 MAKAIPSLEQIEAWANAVLVAENTGEQEITVRFTDDEESQTLNHEYRGKDKPTNVLSFP- 75 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 F G +LGD+V+ +I EA K NH H+++HG LHLLGYDH+DD DA Sbjct: 76 -FEVPPGIEMNLLGDLVICVPVIMREAEEQDKTPTNHYAHMVVHGILHLLGYDHIDDADA 134 Query: 149 CVMEGLERSILEDLGINDPYE 169 +ME E IL L I +PY+ Sbjct: 135 DIMEAKEIRILASLNIGNPYQ 155 >gi|329897208|ref|ZP_08271948.1| heat shock protein involved in translation [gamma proteobacterium IMCC3088] gi|328921363|gb|EGG28757.1| heat shock protein involved in translation [gamma proteobacterium IMCC3088] Length = 157 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 87/158 (55%), Gaps = 11/158 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + V+ A GD + F + VS + K V+L +V DS+ I+ L Sbjct: 1 MNISVCVDRACGGDSPD-----DDSFRRWVSAALKACR--KSGHVDLKIV--DSNEIQYL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D TNVLSFP+ G S +LGD+ L +IE EA+ K +H HL Sbjct: 52 NKTYRGKDAATNVLSFPSELPP--GIPSDLLGDLALCTPVIEREASEQRKVLMHHWAHLT 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHL+G+DH++D DA +ME LE IL L + +PY Sbjct: 110 IHGTLHLIGFDHIEDTDAEIMESLEIDILASLSLPNPY 147 >gi|326386703|ref|ZP_08208324.1| hypothetical protein Y88_2596 [Novosphingobium nitrogenifigens DSM 19370] gi|326208756|gb|EGD59552.1| hypothetical protein Y88_2596 [Novosphingobium nitrogenifigens DSM 19370] Length = 164 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 56/121 (46%), Positives = 70/121 (57%), Gaps = 11/121 (9%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TAFASSDGCSSLMLGDIVLAY 108 +SLV D + LN ++R DKPTNVLSFP +A + D + MLGD++LA+ Sbjct: 45 VSLVLADDEEVHELNKQWRAKDKPTNVLSFPMLSREEVLSAAEAPDAPA--MLGDLILAH 102 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDP 167 + EA G + H HLI+HG LHL GYDH + DA MEGLER L LGI DP Sbjct: 103 GVCAREAVEKGVTQDAHTSHLIVHGLLHLAGYDHETGEADAEEMEGLERKALALLGIADP 162 Query: 168 Y 168 Y Sbjct: 163 Y 163 >gi|300024988|ref|YP_003757599.1| hypothetical protein Hden_3487 [Hyphomicrobium denitrificans ATCC 51888] gi|299526809|gb|ADJ25278.1| protein of unknown function UPF0054 [Hyphomicrobium denitrificans ATCC 51888] Length = 171 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 4/112 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +++ + +E LN ++RG KPTNVLSFP + +G +GD++LA E + EA+ Sbjct: 54 VAVALSSDASVEVLNGQFRGKPKPTNVLSFP----AGEGAPDDFIGDVILAAETVRREAD 109 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G E+HL HL++HG LHL G+DH+ +A ME +E SIL LG+ +PY Sbjct: 110 EQGVSPEHHLQHLVVHGILHLFGFDHMSADEAEHMEAIEISILSKLGVANPY 161 >gi|71733514|ref|YP_276505.1| metalloprotease [Pseudomonas syringae pv. phaseolicola 1448A] gi|123635049|sp|Q48DN6|RRMF_PSE14 RecName: Full=Probable rRNA maturation factor gi|71554067|gb|AAZ33278.1| conserved hypothetical protein TIGR00043 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322686|gb|EFW78779.1| putative metalloprotease [Pseudomonas syringae pv. glycinea str. B076] gi|320330529|gb|EFW86508.1| putative metalloprotease [Pseudomonas syringae pv. glycinea str. race 4] gi|330873683|gb|EGH07832.1| metal-binding heat shock protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 166 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 66/161 (40%), Positives = 88/161 (54%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E + DE R CE+ G + EL++ D + L Sbjct: 4 LDLQIASETSA-PDEARFRLWCEM------------GLRQRSADSELTIRLVDENEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADAPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 150 >gi|187931464|ref|YP_001891448.1| hypothetical protein FTM_0691 [Francisella tularensis subsp. mediasiatica FSC147] gi|238691552|sp|B2SG11|RRMF_FRATM RecName: Full=Probable rRNA maturation factor gi|187712373|gb|ACD30670.1| conserved hypothetical protein, putative [Francisella tularensis subsp. mediasiatica FSC147] Length = 162 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 8/130 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----PTAFASSDGCSS 98 L++ + + V L++V D I+ +N ++R DKPTN++SF P D ++ Sbjct: 28 LVADKHHISHAEVNLNIVSND--EIQQINKQFRNKDKPTNIISFEFEKPQGLP--DDIAN 83 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV+A ++E EA KE +H H+ IHG LHLLGYDH D++A VME LE + Sbjct: 84 DFLGDIVIAPAVLENEAKEQNKELNDHWQHIFIHGLLHLLGYDHQGDQEAEVMENLEIQL 143 Query: 159 LEDLGINDPY 168 L LGI +PY Sbjct: 144 LAQLGIANPY 153 >gi|302381346|ref|YP_003817169.1| hypothetical protein Bresu_0231 [Brevundimonas subvibrioides ATCC 15264] gi|302191974|gb|ADK99545.1| protein of unknown function UPF0054 [Brevundimonas subvibrioides ATCC 15264] Length = 153 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 55/110 (50%), Positives = 67/110 (60%), Gaps = 1/110 (0%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ TD + LN +RG D+PTNVLSFP A G LGDIVLAY + EA Sbjct: 39 VLLTDDATVRDLNARFRGKDRPTNVLSFPAADMPDTG-GPRPLGDIVLAYGVCAGEATAQ 97 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GK HL HL++HG LHLLG DH D+ +A ME ER+IL LG+ DPY Sbjct: 98 GKTLTGHLTHLVVHGVLHLLGRDHEDEAEAETMEAEERTILARLGVADPY 147 >gi|158421634|ref|YP_001522926.1| hypothetical protein AZC_0010 [Azorhizobium caulinodans ORS 571] gi|172048013|sp|A8IG05|RRMF_AZOC5 RecName: Full=Probable rRNA maturation factor gi|158328523|dbj|BAF86008.1| protein of unknown function [Azorhizobium caulinodans ORS 571] Length = 159 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/114 (50%), Positives = 72/114 (63%), Gaps = 1/114 (0%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+S+ TD RI LN E+R DKPTNVLSFP A +G LGD+++A E + E Sbjct: 41 AEMSITLTDDARIRVLNREWRDKDKPTNVLSFPAA-ELPEGVVPQPLGDVIVARETVFSE 99 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K +HL HL++HG LHL+G+DH DD +A ME ER IL LGI+DPY Sbjct: 100 ALAEDKTPAHHLAHLVVHGTLHLMGFDHEDDDEAEEMEAAERQILAGLGIDDPY 153 >gi|71902417|ref|ZP_00684373.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] gi|71727855|gb|EAO30096.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] Length = 213 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 75/163 (46%), Gaps = 23/163 (14%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 LPR L AV W A + I K +L++ D Sbjct: 68 LPRTKLPAAVSFRKW-------------VAATLQGRIRKA--------DLAIRIVDEKEG 106 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN+ YR D TNVLSFP +LGDIV+ +I EA GK H Sbjct: 107 RALNYHYRNKDYATNVLSFPAQLPEPFPKALKIPLLGDIVMCAPVIAREATEQGKSLSAH 166 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL +HG LHLLG++H D ++A ME LER IL +LGI+DPY Sbjct: 167 YAHLTVHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPY 209 >gi|71276466|ref|ZP_00652742.1| Protein of unknown function UPF0054 [Xylella fastidiosa Dixon] gi|71898875|ref|ZP_00681042.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] gi|71162782|gb|EAO12508.1| Protein of unknown function UPF0054 [Xylella fastidiosa Dixon] gi|71731287|gb|EAO33351.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] Length = 213 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 75/163 (46%), Gaps = 23/163 (14%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 LPR L AV W A + I K +L++ D Sbjct: 68 LPRTKLPAAVSFRKW-------------VAATLQGRIRKA--------DLAIRIVDEKEG 106 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN+ YR D TNVLSFP +LGDIV+ +I EA GK H Sbjct: 107 RALNYHYRNKDYATNVLSFPAQLPEPFPKALKIPLLGDIVMCAPVIAREATEQGKSLSAH 166 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL +HG LHLLG++H D ++A ME LER IL +LGI+DPY Sbjct: 167 YAHLTVHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPY 209 >gi|16124310|ref|NP_418874.1| hypothetical protein CC_0054 [Caulobacter crescentus CB15] gi|221232991|ref|YP_002515427.1| metal-dependent hydrolase [Caulobacter crescentus NA1000] gi|26006909|sp|Q9AC14|RRMF_CAUCR RecName: Full=Probable rRNA maturation factor gi|254799469|sp|B8GX09|RRMF_CAUCN RecName: Full=Probable rRNA maturation factor gi|13421148|gb|AAK22042.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220962163|gb|ACL93519.1| predicted metal-dependent hydrolase [Caulobacter crescentus NA1000] Length = 157 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 67/113 (59%), Gaps = 5/113 (4%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ TD ++ LN ++R D TNVLSFP+ + +G +GDI LAY + EA Sbjct: 46 ILLTDDDSVQALNRDFRKKDYATNVLSFPSP-PNPEG----QIGDIALAYGVCAREAAEQ 100 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HL+ HG LHLLGYDH D +A ME LER IL L + DPY D Sbjct: 101 GKPLAHHLQHLVAHGVLHLLGYDHERDDEAEAMEALEREILAGLDVPDPYASD 153 >gi|165933701|ref|YP_001650490.1| metal-binding heat shock protein [Rickettsia rickettsii str. Iowa] gi|189038666|sp|B0BV24|RRMF_RICRO RecName: Full=Probable rRNA maturation factor gi|165908788|gb|ABY73084.1| hypothetical metal-binding protein [Rickettsia rickettsii str. Iowa] Length = 167 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------- 98 F K ELS++ T++ I LN ++R I+K TNVLSFP+ + S Sbjct: 38 FSKIKQFELSILLTNAAEILILNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDY 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGDI YE+I E+ K FENH +HL+IH LHL+G+DH +D +A +ME LE I Sbjct: 98 MHLGDIAFCYEVIYNESCEQHKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEI 157 Query: 159 LEDLGINDPY 168 L GI PY Sbjct: 158 LSYFGIFPPY 167 >gi|71892097|ref|YP_277827.1| hypothetical protein BPEN_324 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641012|sp|Q492Z0|RRMF_BLOPB RecName: Full=Probable rRNA maturation factor gi|71796203|gb|AAZ40954.1| conserved hypothetical protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 157 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 13/153 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQ+A +N L + K + +S + + + +EL++ D + L Sbjct: 8 IDLQLACKN-----------LHGLPNRKMFQSWVSAIFSIYKKKIELTVRIVDIKEMHYL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N+ Y D PTNVLSFP F G S +LGD+VL +IIE E+ +H H+I Sbjct: 57 NWYYLKKDCPTNVLSFP--FTPPLGMKSPLLGDVVLCRQIIEYESKEKNVPGRSHWAHMI 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 IHG LHLLGY+H+ DK+A +M+ +ER+IL+ G Sbjct: 115 IHGSLHLLGYNHIVDKEAILMQRVERNILQKCG 147 >gi|28199652|ref|NP_779966.1| putative metalloprotease [Xylella fastidiosa Temecula1] gi|170731019|ref|YP_001776452.1| putative metalloprotease [Xylella fastidiosa M12] gi|182682398|ref|YP_001830558.1| putative metalloprotease [Xylella fastidiosa M23] gi|32130366|sp|Q87AP2|RRMF_XYLFT RecName: Full=Probable rRNA maturation factor gi|238687948|sp|B0U4P3|RRMF_XYLFM RecName: Full=Probable rRNA maturation factor gi|238691098|sp|B2I8U3|RRMF_XYLF2 RecName: Full=Probable rRNA maturation factor gi|28057767|gb|AAO29615.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|167965812|gb|ACA12822.1| conserved hypothetical protein [Xylella fastidiosa M12] gi|182632508|gb|ACB93284.1| protein of unknown function UPF0054 [Xylella fastidiosa M23] gi|307578678|gb|ADN62647.1| putative metalloprotease [Xylella fastidiosa subsp. fastidiosa GB514] Length = 161 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D LN+ YR D TNVLSFP +LGDIV+ +I Sbjct: 42 ADLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEPFPKALKIPLLGDIVMCAPVIA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG++H D ++A ME LER IL +LGI+DPY Sbjct: 102 REATEQGKSLSAHYAHLTVHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPY 157 >gi|52841670|ref|YP_095469.1| metal dependent hydrolase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294525|ref|YP_126940.1| hypothetical protein lpl1601 [Legionella pneumophila str. Lens] gi|54297350|ref|YP_123719.1| hypothetical protein lpp1395 [Legionella pneumophila str. Paris] gi|148358971|ref|YP_001250178.1| metal dependent hydrolase [Legionella pneumophila str. Corby] gi|296107020|ref|YP_003618720.1| Predicted metal-dependent hydrolase [Legionella pneumophila 2300/99 Alcoy] gi|59799081|sp|Q5WW59|RRMF_LEGPL RecName: Full=Probable rRNA maturation factor gi|59799082|sp|Q5X5C5|RRMF_LEGPA RecName: Full=Probable rRNA maturation factor gi|59799085|sp|Q5ZVK0|RRMF_LEGPH RecName: Full=Probable rRNA maturation factor gi|166235104|sp|A5IBT2|RRMF_LEGPC RecName: Full=Probable rRNA maturation factor gi|52628781|gb|AAU27522.1| metal dependent hydrolase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751135|emb|CAH12546.1| hypothetical protein lpp1395 [Legionella pneumophila str. Paris] gi|53754357|emb|CAH15841.1| hypothetical protein lpl1601 [Legionella pneumophila str. Lens] gi|148280744|gb|ABQ54832.1| metal dependent hydrolase [Legionella pneumophila str. Corby] gi|295648921|gb|ADG24768.1| Predicted metal-dependent hydrolase [Legionella pneumophila 2300/99 Alcoy] Length = 158 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 71/117 (60%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL++ D + LN YR +KPTNVL+FP + ++ +LGD+V+ E++ E Sbjct: 37 AELTVRLVDVEEMTYLNHTYRKKNKPTNVLAFPCSLPANIELECPLLGDVVICPEVLLAE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 + K H ++IHG LHLLGYDH+ D++A +M+ LE +L +LG +PYEV+ Sbjct: 97 SAQFNKSLHAHWSLILIHGVLHLLGYDHIKDEEASIMQMLEAKLLAELGYANPYEVE 153 >gi|312797210|ref|YP_004030132.1| hypothetical protein [Burkholderia rhizoxinica HKI 454] gi|312168985|emb|CBW75988.1| Hypothetical metal-binding protein [Burkholderia rhizoxinica HKI 454] Length = 157 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL++ F D LN YRG D PTNVL+F A+ SD + + GD+VL ++E E Sbjct: 44 AELTIRFVDEQEGRALNRSYRGKDYPTNVLTF--AYGESD--NEPVSGDLVLCCPVVESE 99 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K + H HLI+HG LH GYDH DD+ A ME +E IL LG DPY Sbjct: 100 AREQHKPLDAHYAHLIVHGVLHAQGYDHEDDEQAREMESIETDILARLGYPDPY 153 >gi|241662039|ref|YP_002980399.1| unkown domain/ metalloprotease fusion protein [Ralstonia pickettii 12D] gi|240864066|gb|ACS61727.1| protein of unknown function UPF0054 [Ralstonia pickettii 12D] Length = 270 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 74/147 (50%), Gaps = 7/147 (4%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 +GDE+ + + + I+ F +L++ F TLN YRG D T Sbjct: 128 YGDELKAAARKALPKERDIEAWIAPALFAD---AQLNVRFVGEEEGRTLNRTYRGKDYAT 184 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 NVL+F A ++ D S+ DIVL ++E EA K H HLI+HG LH GYD Sbjct: 185 NVLTFSYAESAEDPVSA----DIVLCCAVVEKEAKEQKKPLTAHYAHLIVHGALHAQGYD 240 Query: 142 HVDDKDACVMEGLERSILEDLGINDPY 168 H D DA MEG+E IL DLG DPY Sbjct: 241 HEDAADAKEMEGIETEILRDLGFADPY 267 >gi|157828976|ref|YP_001495218.1| putative metalloprotease [Rickettsia rickettsii str. 'Sheila Smith'] gi|166228797|sp|A8GTI5|RRMF_RICRS RecName: Full=Probable rRNA maturation factor gi|157801457|gb|ABV76710.1| hypothetical protein A1G_06285 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 167 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 10/130 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------- 98 F K ELS++ T++ I LN ++R I+K TNVLSFP+ + S Sbjct: 38 FSKIKQFELSILLTNAAEILILNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDY 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + LGDI YE+I E+ K FENH +HL+IH LHL+G+DH +D +A +ME LE I Sbjct: 98 MHLGDIAFCYEVIYNESCEQYKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEI 157 Query: 159 LEDLGINDPY 168 L GI PY Sbjct: 158 LSYFGIFPPY 167 >gi|15599177|ref|NP_252671.1| metalloprotease [Pseudomonas aeruginosa PAO1] gi|107103500|ref|ZP_01367418.1| hypothetical protein PaerPA_01004570 [Pseudomonas aeruginosa PACS2] gi|116052021|ref|YP_789136.1| putative metalloprotease [Pseudomonas aeruginosa UCBPP-PA14] gi|254236875|ref|ZP_04930198.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254242668|ref|ZP_04935990.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296387490|ref|ZP_06876965.1| putative metalloprotease [Pseudomonas aeruginosa PAb1] gi|313109422|ref|ZP_07795382.1| hypothetical protein PA39016_001790022 [Pseudomonas aeruginosa 39016] gi|26006910|sp|Q9HX37|RRMF_PSEAE RecName: Full=Probable rRNA maturation factor gi|122261168|sp|Q02SF0|RRMF_PSEAB RecName: Full=Probable rRNA maturation factor gi|9950173|gb|AAG07369.1|AE004816_5 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115587242|gb|ABJ13257.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126168806|gb|EAZ54317.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196046|gb|EAZ60109.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|310881884|gb|EFQ40478.1| hypothetical protein PA39016_001790022 [Pseudomonas aeruginosa 39016] Length = 160 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 79/161 (49%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E R CE+ + + EL++ D L Sbjct: 5 LDLQVASAAPDLPSEAQFRAWCELALRQRPES-------------ELTIRLVDEAEGLEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D TNVLSFP A + +LGD+V+ ++ EA K + H HL+ Sbjct: 52 NSTYRHKDYATNVLSFP-ADVPDELLDIPLLGDLVICAPVVAREALEQRKPLQAHWAHLV 110 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 111 IHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|238791655|ref|ZP_04635293.1| metalloprotease [Yersinia intermedia ATCC 29909] gi|238729271|gb|EEQ20787.1| metalloprotease [Yersinia intermedia ATCC 29909] Length = 120 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 2/115 (1%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 + E+++ D LN YRG DKPTNVLSFP F + +LGD+++ +++E Sbjct: 1 MAEVTVRLVDEAESHELNLTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQ 58 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 59 EAIEQEKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 113 >gi|315497216|ref|YP_004086020.1| hypothetical protein Astex_0168 [Asticcacaulis excentricus CB 48] gi|315415228|gb|ADU11869.1| protein of unknown function UPF0054 [Asticcacaulis excentricus CB 48] Length = 156 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 5/122 (4%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106 Y + ++L ++ TD ++ LN E+R + PTNVLSFP + LGDI Sbjct: 37 AYLGAKEQLDLVVLLTDDAEMKALNKEFRQKNAPTNVLSFP-----APDMMHPHLGDIAF 91 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 +E EA K + H+ HL +HG LHLLGYDH++D +A ME LER IL LGI D Sbjct: 92 GFETCVREAKEQKKTLKAHVAHLSVHGALHLLGYDHINDPEAEEMEDLERKILHGLGIAD 151 Query: 167 PY 168 PY Sbjct: 152 PY 153 >gi|254437107|ref|ZP_05050601.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 307] gi|198252553|gb|EDY76867.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 307] Length = 156 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 18/162 (11%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E+ W + L TL + A+S G ++ + E+S++ RI LN ++R Sbjct: 2 IEDDRW---LGLATLADRAAFAALS-----GVGLEASAFEISMLACGDTRISALNADFRQ 53 Query: 77 IDKPTNVLSFPTA--FASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TNVLS+P++ A DG LGDI ++Y+ I EA G +H+ Sbjct: 54 KGAATNVLSWPSSERGADVDGDMPVQPQVPQDTQLGDIAISYDTIAREAAQSGTPLVDHV 113 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HLI+HG LHLLG+DHV D D +MEGLE IL L I DPY Sbjct: 114 THLIVHGTLHLLGFDHVRDLDGALMEGLETEILGKLDIRDPY 155 >gi|15837505|ref|NP_298193.1| putative metalloprotease [Xylella fastidiosa 9a5c] gi|26006920|sp|Q9PEX5|RRMF_XYLFA RecName: Full=Probable rRNA maturation factor gi|9105822|gb|AAF83713.1|AE003930_3 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 161 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIE 112 +L++ D LN+ YR D TNVLSFP +LGDIV+ +I Sbjct: 42 ADLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEPLPKALKIPLLGDIVMCAPVIA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H HL +HG LHLLG++H D ++A ME LER IL +LGI+DPY Sbjct: 102 REAAEQGKSLSAHYAHLTVHGTLHLLGWNHEDHQEADAMEQLEREILANLGISDPY 157 >gi|330828615|ref|YP_004391567.1| metalloprotease [Aeromonas veronii B565] gi|328803751|gb|AEB48950.1| metalloprotease [Aeromonas veronii B565] Length = 154 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG DKPTNVLSFP F + G +LGD+V+ +++E E Sbjct: 38 AEVTVRIVDEAESNELNLTYRGKDKPTNVLSFP--FEAPPGLELPLLGDLVICRQVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK H H+++HG LHLLGYDH++D++A ME LER I+++LG DPY Sbjct: 96 AEEQGKPLMAHWAHMVVHGSLHLLGYDHIEDEEAEEMEALERDIMQELGFADPY 149 >gi|114766587|ref|ZP_01445543.1| hypothetical protein 1100011001317_R2601_08751 [Pelagibaca bermudensis HTCC2601] gi|114541203|gb|EAU44255.1| hypothetical protein R2601_08751 [Roseovarius sp. HTCC2601] Length = 160 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/121 (43%), Positives = 71/121 (58%), Gaps = 9/121 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF--------ASSDGCSSLMLGDIVLA 107 E++++ D RI LN ++R KPTNVLS+P+ DG LGDI +A Sbjct: 40 EIAVLACDDARIAELNGDFRAKPKPTNVLSWPSEERDPEEPPEGGEDGMPE-ELGDIAIA 98 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 +E EA GK ++H+ HL++H LHLLGYDH+ D +A VME LE IL +GI DP Sbjct: 99 WETCAREAAEQGKPLDHHITHLMVHATLHLLGYDHISDAEATVMETLETEILGKMGIEDP 158 Query: 168 Y 168 Y Sbjct: 159 Y 159 >gi|160876547|ref|YP_001555863.1| putative metalloprotease [Shewanella baltica OS195] gi|189040143|sp|A9KZZ5|RRMF_SHEB9 RecName: Full=Probable rRNA maturation factor gi|160862069|gb|ABX50603.1| protein of unknown function UPF0054 [Shewanella baltica OS195] gi|315268741|gb|ADT95594.1| protein of unknown function UPF0054 [Shewanella baltica OS678] Length = 153 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/134 (44%), Positives = 79/134 (58%), Gaps = 6/134 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 FA V+N I N EL++ DS + LN YRG DKPTNVLSFP F + Sbjct: 24 FALWVTNAIGNSM----NEAELTIRIVDSRESQMLNSTYRGKDKPTNVLSFP--FEAPPE 77 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +LGD+V+ ++E EA K E H H+++HG LHLLGYDH++D++A ME LE Sbjct: 78 IELPLLGDLVICAAVVENEAREQQKTLEAHWAHMVVHGCLHLLGYDHIEDEEAEEMESLE 137 Query: 156 RSILEDLGINDPYE 169 ++E LG DPY+ Sbjct: 138 TQLIEGLGFTDPYK 151 >gi|54310005|ref|YP_131025.1| putative metalloprotease [Photobacterium profundum SS9] gi|59799114|sp|Q6LNA3|RRMF_PHOPR RecName: Full=Probable rRNA maturation factor gi|46914444|emb|CAG21223.1| Putative predicted metal dependent hydrolase [Photobacterium profundum SS9] Length = 154 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 89/161 (55%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ A EN + + + F AV+ S E+++ D + L Sbjct: 5 LDLQYATENQ---EGLPSEDKFQQWFEAAVTLFQSDA--------EITIRIVDVKESQAL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYRG DKPTNVLSFP F + G +LGD+++ +++EIEA K H H++ Sbjct: 54 NLEYRGKDKPTNVLSFP--FEAPPGIELDLLGDLIICRQVVEIEAKEQDKPLNAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D++A ME LE I+E +G DP+ + Sbjct: 112 VHGTLHLLGYDHIEDEEAEEMEYLETEIIEKMGFADPFAAE 152 >gi|304413111|ref|ZP_07394584.1| hypothetical protein REG_0098 [Candidatus Regiella insecticola LSR1] gi|304283954|gb|EFL92347.1| hypothetical protein REG_0098 [Candidatus Regiella insecticola LSR1] Length = 177 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D LNF YR DKPTNVLSFP+ LGD+V+ +++E EA Sbjct: 65 EMTIRLVDEAESRQLNFIYRDKDKPTNVLSFPSTLPEEINLP--WLGDLVICRQVVEREA 122 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K H H+++HG LHLLGYDH+ D++A ME LE IL+ LG D Y Sbjct: 123 VEQNKTLLAHWAHMVVHGTLHLLGYDHITDEEAQEMESLETDILQTLGYPDAY 175 >gi|307610143|emb|CBW99689.1| hypothetical protein LPW_14571 [Legionella pneumophila 130b] Length = 158 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 70/117 (59%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL++ D + LN YR +KPTNVL+FP + + +LGD+V+ E++ E Sbjct: 37 AELTVRLVDVEEMTYLNHTYRKKNKPTNVLAFPCSLPENIELECPLLGDVVICPEVLLAE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 + K H ++IHG LHLLGYDH+ D++A +M+ LE +L +LG +PYEV+ Sbjct: 97 SAQFNKSLHAHWSLILIHGVLHLLGYDHIKDEEASIMQMLEAKLLAELGYANPYEVE 153 >gi|90414092|ref|ZP_01222075.1| hypothetical protein P3TCK_25855 [Photobacterium profundum 3TCK] gi|90324887|gb|EAS41415.1| hypothetical protein P3TCK_25855 [Photobacterium profundum 3TCK] Length = 154 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ A EN + + + F AV+ S E+++ D + L Sbjct: 5 LDLQYATENQ---EGLPSEDEFQQWFEAAVTLFQSDA--------EITIRIVDVKESQAL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYRG DKPTNVLSFP F + G +LGD+++ +++EIEA K H H++ Sbjct: 54 NLEYRGKDKPTNVLSFP--FETPPGIELDLLGDLIICRQVVEIEAKEQDKPLNAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D++A ME LE I+E +G DP+ Sbjct: 112 VHGTLHLLGYDHIEDEEAEEMESLETEIIEKMGFADPF 149 >gi|270160107|ref|ZP_06188763.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289165115|ref|YP_003455253.1| metal-dependent hydrolase [Legionella longbeachae NSW150] gi|269988446|gb|EEZ94701.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288858288|emb|CBJ12156.1| putative metal-dependent hydrolase [Legionella longbeachae NSW150] Length = 158 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 70/117 (59%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL++ + LN+ YR I+K TNVL+FP + +LGD+++ +++ E Sbjct: 37 AELTIRLVTPEEMLQLNYTYRKINKTTNVLAFPCTLPTEVQLDYSLLGDVIICPQVLLDE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 + L K E+H ++IHG LHLLGYDH+ D DA +M+ +E +L +LG +PY+ + Sbjct: 97 SKQLNKTLESHWALIVIHGILHLLGYDHIKDDDAAIMQSIEIKLLTELGFANPYDAE 153 >gi|219870682|ref|YP_002475057.1| putative metalloprotease [Haemophilus parasuis SH0165] gi|254803906|sp|B8F457|RRMF_HAEPS RecName: Full=Probable rRNA maturation factor gi|219690886|gb|ACL32109.1| metalloprotease [Haemophilus parasuis SH0165] Length = 162 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/159 (40%), Positives = 87/159 (54%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN + L T + F V ++ + E+++ D Sbjct: 5 IDLQIASENT-----VGLPTAAQ--FQHWVDKALAMEAKTADYPETEITIRIVDEAESHE 57 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA K E H HL Sbjct: 58 LNLTYRGKDKPTNVLSFP--FEVPEGIQLPLLGDLIICRQVVEKEAVEQEKPLEAHWAHL 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH+ D++A ME LE I++ LG +DPY Sbjct: 116 AIHGTLHLLGYDHLTDEEAEEMESLETEIMQSLGFDDPY 154 >gi|187927509|ref|YP_001897996.1| unkown domain/putative metalloprotease fusion protein [Ralstonia pickettii 12J] gi|309779789|ref|ZP_07674544.1| hypothetical protein HMPREF1004_01138 [Ralstonia sp. 5_7_47FAA] gi|187724399|gb|ACD25564.1| protein of unknown function UPF0054 [Ralstonia pickettii 12J] gi|308921366|gb|EFP67008.1| hypothetical protein HMPREF1004_01138 [Ralstonia sp. 5_7_47FAA] Length = 270 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 74/147 (50%), Gaps = 7/147 (4%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 +GDE+ + + + I+ F +L++ F TLN YRG D T Sbjct: 128 YGDELKAAARKALPKERDIEGWIAPALFAD---AQLNVRFVGEEEGRTLNRTYRGKDYAT 184 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 NVL+F A ++ D S+ DIVL ++E EA K H HLI+HG LH GYD Sbjct: 185 NVLTFSYAESAEDPVSA----DIVLCCTVVEKEAKEQKKPLLAHYAHLIVHGALHAQGYD 240 Query: 142 HVDDKDACVMEGLERSILEDLGINDPY 168 H D DA MEG+E IL DLG DPY Sbjct: 241 HEDAADAKEMEGIETEILRDLGFADPY 267 >gi|91206125|ref|YP_538480.1| putative metalloprotease [Rickettsia bellii RML369-C] gi|122425195|sp|Q1RGX3|RRMF_RICBR RecName: Full=Probable rRNA maturation factor gi|91069669|gb|ABE05391.1| Putative metal-dependent hydrolase [Rickettsia bellii RML369-C] Length = 183 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 22/135 (16%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--------AFASSDGCSS--------- 98 ELS++ T++ I TLN ++R I+K TNVLSFP F+ ++ SS Sbjct: 45 ELSILLTNNEEILTLNKQFRNIEKATNVLSFPANELNWQDLRFSGNEIASSNKPIILENL 104 Query: 99 -----LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 + LGDI +++I E+ K FENH +HL+IH LHL+G+DH +D + +ME Sbjct: 105 GDSDYMHLGDIAFCHDVIYNESYEQQKTFENHFIHLLIHSILHLIGFDHQNDTETKIMEN 164 Query: 154 LERSILEDLGINDPY 168 LE IL GI+ PY Sbjct: 165 LEIEILAHFGISSPY 179 >gi|167855765|ref|ZP_02478519.1| hypothetical protein HPS_06120 [Haemophilus parasuis 29755] gi|167853105|gb|EDS24365.1| hypothetical protein HPS_06120 [Haemophilus parasuis 29755] Length = 162 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/159 (40%), Positives = 87/159 (54%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN + L T + F V ++ + E+++ D Sbjct: 5 IDLQIASENT-----VGLPTAAQ--FQHWVDKALAMEAKTADYPETEITIRIVDEAESHE 57 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA K E H HL Sbjct: 58 LNLTYRGKDKPTNVLSFP--FEMPEGIELPLLGDLIICRQVVEKEAVEQEKPLEAHWAHL 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH+ D++A ME LE I++ LG +DPY Sbjct: 116 AIHGTLHLLGYDHLTDEEAEEMESLETEIMQSLGFDDPY 154 >gi|149907592|ref|ZP_01896339.1| hypothetical protein PE36_06882 [Moritella sp. PE36] gi|149809262|gb|EDM69191.1| hypothetical protein PE36_06882 [Moritella sp. PE36] Length = 153 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA EN E L T ++ A N + K + ++ E+++ D+ + L Sbjct: 5 LDLQIATEN-----EQKLPTEAQL---NAWLNAVVKRF---QDSAEVTIRIVDNTESQQL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F +G +LGD+++ +++E EA K H H++ Sbjct: 54 NNDYRGKDKPTNVLSFP--FEVPEGIELDLLGDLIICKQVVEREAKEQQKPLTAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH+ D++A MEGLE I+ +L DPY Sbjct: 112 IHGTLHLLGYDHIIDEEAEEMEGLETEIMLELEFEDPY 149 >gi|298293909|ref|YP_003695848.1| hypothetical protein Snov_3959 [Starkeya novella DSM 506] gi|296930420|gb|ADH91229.1| protein of unknown function UPF0054 [Starkeya novella DSM 506] Length = 172 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/124 (46%), Positives = 75/124 (60%), Gaps = 1/124 (0%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDI 104 S Y + + E+++ TD I LN ++RG D TNVLSFPT + G LGDI Sbjct: 40 SSEYELDIDGAEIAVKLTDDASIRLLNRDWRGKDYATNVLSFPTPEMARAGGDP-HLGDI 98 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A+E + EA GK F +HLVHL +HG LHLLGYDH +DA ME +ER +L LG+ Sbjct: 99 AIAFETLAREAAEEGKPFADHLVHLAVHGTLHLLGYDHEVAEDAEEMEAMERRVLAGLGV 158 Query: 165 NDPY 168 DPY Sbjct: 159 PDPY 162 >gi|118602172|ref|YP_903387.1| hypothetical protein Rmag_0121 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|145572752|sp|A1AVF9|RRMF_RUTMC RecName: Full=Probable rRNA maturation factor gi|118567111|gb|ABL01916.1| protein of unknown function UPF0054 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 145 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/113 (46%), Positives = 67/113 (59%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL + + I+ LN YR DK TNVLSF + +LGD+V+ +++ E+ Sbjct: 35 ELLIRLVNETEIKNLNKVYRHQDKLTNVLSFQSDLPIE--IDEAVLGDVVICTQVVLKES 92 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K F NHL H+ IHG LHLLGYDH+D KDA ME LE IL +GIN+PY Sbjct: 93 IEQHKSFNNHLTHMAIHGMLHLLGYDHIDTKDAQQMENLEIKILAKIGINNPY 145 >gi|49080770|gb|AAT50056.1| PA3982 [synthetic construct] Length = 161 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E R CE+ + + EL++ D L Sbjct: 5 LDLQVASAAPDLPSEAQFRAWCELALRQRPES-------------ELTIRLVDEAEGLEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D TN+LSFP A + +LGD+V+ ++ EA K + H HL+ Sbjct: 52 NSTYRHKDYATNLLSFP-ADVPDELLDIPLLGDLVICAPVVAREALEQRKPLQAHWAHLV 110 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 111 IHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|330892982|gb|EGH25643.1| metal-binding heat shock protein [Pseudomonas syringae pv. mori str. 301020] Length = 161 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E + DE R CE+ G + EL++ D + L Sbjct: 4 LDLQIASETSA-PDEARFRLWCEM------------GLRQRSADSELTIRLVDENEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 150 >gi|297520691|ref|ZP_06939077.1| putative metalloprotease [Escherichia coli OP50] Length = 107 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/100 (51%), Positives = 65/100 (65%), Gaps = 2/100 (2%) Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H Sbjct: 5 SLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAH 62 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 63 MVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 102 >gi|89092051|ref|ZP_01165006.1| hypothetical protein MED92_07786 [Oceanospirillum sp. MED92] gi|89083786|gb|EAR63003.1| hypothetical protein MED92_07786 [Oceanospirillum sp. MED92] Length = 151 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/101 (46%), Positives = 64/101 (63%), Gaps = 2/101 (1%) Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + LN YR DKPTNVLSFP F +G +LGD+++ E++ EA+ K +H Sbjct: 49 QELNHTYRDKDKPTNVLSFP--FDIPEGIPIQLLGDLIICAEVVVTEASEQNKALFDHWA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+++HG LHL+G+DH+ D +A ME LER IL L I DPY Sbjct: 107 HMVVHGCLHLIGFDHIKDDEAEEMENLERQILASLDIADPY 147 >gi|257482208|ref|ZP_05636249.1| putative metalloprotease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625795|ref|ZP_06458749.1| putative metalloprotease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648420|ref|ZP_06479763.1| putative metalloprotease [Pseudomonas syringae pv. aesculi str. 2250] gi|298489003|ref|ZP_07007026.1| predicted metal-dependent hydrolase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156501|gb|EFH97598.1| predicted metal-dependent hydrolase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867191|gb|EGH01900.1| metal-binding heat shock protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871079|gb|EGH05788.1| metal-binding heat shock protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331011327|gb|EGH91383.1| metal-binding heat shock protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 166 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E + DE R CE+ G + EL++ D + L Sbjct: 4 LDLQIASETSA-PDEARFRLWCEM------------GLRQRSADSELTIRLVDENEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 150 >gi|254877220|ref|ZP_05249930.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843241|gb|EET21655.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 169 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 13/144 (9%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + L E FA L++ + + + V LS+V + I+ +N ++R DKPTN++SF Sbjct: 30 QDLLEKCFA-----LVADKHNISQAEVNLSIV--SNQEIQQINKQFRHKDKPTNIISF-- 80 Query: 89 AFASSDG----CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 F +G + GDIV+A E+++ EA K ++H H+ IHG LHLLGYDH+D Sbjct: 81 EFEKPEGLPEDIADNFWGDIVIAPEVLKKEAKEQNKNLDDHWQHIFIHGLLHLLGYDHID 140 Query: 145 DKDACVMEGLERSILEDLGINDPY 168 D +A ME LE +L +LGI +PY Sbjct: 141 DIEAEEMENLEIELLAELGIANPY 164 >gi|238790780|ref|ZP_04634539.1| metalloprotease [Yersinia frederiksenii ATCC 33641] gi|238721138|gb|EEQ12819.1| metalloprotease [Yersinia frederiksenii ATCC 33641] Length = 127 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E+++ D LN YRG DK TNVLSFP F + +LGD+++ +++ Sbjct: 6 QEVAEVTIRLVDEAESHELNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVV 63 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E EA K H H+++HG LHLLGYDH+ D +A ME +E I+++LG DPY Sbjct: 64 EQEAVEQDKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQNLGYPDPY 120 >gi|78067492|ref|YP_370261.1| putative metalloprotease [Burkholderia sp. 383] gi|77968237|gb|ABB09617.1| protein of unknown function UPF0054 [Burkholderia sp. 383] Length = 258 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 84/163 (51%), Gaps = 15/163 (9%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ I F +L++ F Sbjct: 109 PELDLSVQ-----YGDEITSDVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGEEEGR 160 Query: 69 TLNFEYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 TLN YR D PTNVL+F A+ A+ DG ++GD+VL ++E EA+ GK H Sbjct: 161 TLNAGYRHKDYPTNVLTF--AYDAAPDGT---VIGDLVLCCPVVEKEAHEQGKPLTAHYA 215 Query: 128 HLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 216 HLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 258 >gi|241668688|ref|ZP_04756266.1| hypothetical protein FphipA2_07970 [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 158 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 13/144 (9%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + L E FA L++ + + + V LS+V + I+ +N ++R DKPTN++SF Sbjct: 19 QDLLEKCFA-----LVADKHNISQAEVNLSIV--SNQEIQQINKQFRHKDKPTNIISF-- 69 Query: 89 AFASSDG----CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 F +G + GDIV+A E+++ EA K ++H H+ IHG LHLLGYDH+D Sbjct: 70 EFEKPEGLPEDIADNFWGDIVIAPEVLKKEAKEQNKNLDDHWQHIFIHGLLHLLGYDHID 129 Query: 145 DKDACVMEGLERSILEDLGINDPY 168 D +A ME LE +L +LGI +PY Sbjct: 130 DIEAEEMENLEIELLAELGIANPY 153 >gi|29653905|ref|NP_819597.1| hypothetical protein CBU_0567 [Coxiella burnetii RSA 493] gi|153208801|ref|ZP_01947028.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii 'MSU Goat Q177'] gi|154706495|ref|YP_001424840.1| hypothetical metal-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161830561|ref|YP_001596496.1| hypothetical protein COXBURSA331_A0681 [Coxiella burnetii RSA 331] gi|165919083|ref|ZP_02219169.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii RSA 334] gi|212212943|ref|YP_002303879.1| hypothetical metal-binding protein [Coxiella burnetii CbuG_Q212] gi|212218812|ref|YP_002305599.1| hypothetical metal-binding protein [Coxiella burnetii CbuK_Q154] gi|46577440|sp|Q83DX5|RRMF_COXBU RecName: Full=Probable rRNA maturation factor gi|189038728|sp|A9KCP4|RRMF_COXBN RecName: Full=Probable rRNA maturation factor gi|189040577|sp|A9NC56|RRMF_COXBR RecName: Full=Probable rRNA maturation factor gi|226701644|sp|B6J855|RRMF_COXB1 RecName: Full=Probable rRNA maturation factor gi|226701649|sp|B6J1A6|RRMF_COXB2 RecName: Full=Probable rRNA maturation factor gi|29541168|gb|AAO90111.1| hypothetical metal-binding protein [Coxiella burnetii RSA 493] gi|120575707|gb|EAX32331.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii 'MSU Goat Q177'] gi|154355781|gb|ABS77243.1| hypothetical metal-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161762428|gb|ABX78070.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii RSA 331] gi|165917217|gb|EDR35821.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii RSA 334] gi|212011353|gb|ACJ18734.1| hypothetical metal-binding protein [Coxiella burnetii CbuG_Q212] gi|212013074|gb|ACJ20454.1| hypothetical metal-binding protein [Coxiella burnetii CbuK_Q154] Length = 152 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/118 (44%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 +N L++ F D LN YR PTNVLSFP G S GD+ + ++ Sbjct: 36 KNKSALTIRFIDKEESTELNEHYRHKKGPTNVLSFPDE--PIPGFPSESFGDLAICAPLV 93 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 EA+ K E H HLI HGFLHLLGYDHV+++DA ME LE IL LG +PYE Sbjct: 94 AEEAHAQHKTTEAHFAHLITHGFLHLLGYDHVENEDAEEMENLEIKILSQLGFENPYE 151 >gi|295687477|ref|YP_003591170.1| hypothetical protein Cseg_0020 [Caulobacter segnis ATCC 21756] gi|295429380|gb|ADG08552.1| protein of unknown function UPF0054 [Caulobacter segnis ATCC 21756] Length = 157 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 67/113 (59%), Gaps = 5/113 (4%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ T+ ++ LN ++R D TNVLSFP+ + +G +GDI LAY + EA Sbjct: 46 ILLTNDDTVQGLNRDFRQKDYATNVLSFPSP-PNPEG----QIGDIALAYGVCAREAEEQ 100 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HL+ HG LHLLGYDH D +A ME LER IL L + DPY D Sbjct: 101 GKPLAHHLQHLVAHGVLHLLGYDHESDDEAEAMEALEREILAGLDVPDPYASD 153 >gi|260574095|ref|ZP_05842100.1| protein of unknown function UPF0054 [Rhodobacter sp. SW2] gi|259023561|gb|EEW26852.1| protein of unknown function UPF0054 [Rhodobacter sp. SW2] Length = 168 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/125 (45%), Positives = 67/125 (53%), Gaps = 13/125 (10%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLM----------LGD 103 L L+ D RI LN +R + TNVLS+P+ A G L LGD Sbjct: 43 LCLMGCDDARIAELNAAFRAKGQATNVLSWPSEDRAAEVPGGVPELPEPGTADDPEELGD 102 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I +A+E EA GK H+ HLI+HG LHLLGYDHVDD DA +ME E IL LG Sbjct: 103 IAIAWETCAREAAEQGKPQVAHVTHLIVHGVLHLLGYDHVDDADAELMETTEAGILAGLG 162 Query: 164 INDPY 168 I DPY Sbjct: 163 IADPY 167 >gi|319760452|ref|YP_004124390.1| hypothetical protein BVAF_319 [Candidatus Blochmannia vafer str. BVAF] gi|318039166|gb|ADV33716.1| conserved hypothetical protein [Candidatus Blochmannia vafer str. BVAF] Length = 155 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 12/158 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+LQIA N L+G + K I K +F+ +EL++ D + L Sbjct: 7 LNLQIACTN-LYG----------IPNKKIFQKWIKKIFFLYNKKIELTIRIVDIQEMLYL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N+ Y G PTNVLSFP G S +LGDIV+ +IIE E+ H H+I Sbjct: 56 NWYYAGKKHPTNVLSFPFK-TPLKGILSSLLGDIVICKQIIEYESKQYNISSIMHWAHMI 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH+ +KDA +M +E +I++ G ++ Y Sbjct: 115 IHGSLHLLGYDHILNKDAELMHQMELNIMQKFGYHNYY 152 >gi|238786073|ref|ZP_04630031.1| metalloprotease [Yersinia bercovieri ATCC 43970] gi|238713012|gb|EEQ05066.1| metalloprotease [Yersinia bercovieri ATCC 43970] Length = 154 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA N+ E + E V + + + E+++ D Sbjct: 3 LDLQIACANSQGLPTEADFQQWLEAVLPQF------------QEVSEVTIRLVDEAESHQ 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DK TNVLSFP F + +LGD+++ +++E EA K H H+ Sbjct: 51 LNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQEAVEQEKALFAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 109 VVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 147 >gi|254467928|ref|ZP_05081334.1| conserved hypothetical protein TIGR00043 [beta proteobacterium KB13] gi|207086738|gb|EDZ64021.1| conserved hypothetical protein TIGR00043 [beta proteobacterium KB13] Length = 144 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 72/114 (63%), Gaps = 6/114 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ T + + LN YR +KPTN+LSF S ++GD+VL ++I++ E Sbjct: 33 AEITVRITAASESQELNHHYRNQNKPTNILSFNIESNKS------LIGDLVLCHDIVKKE 86 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K+ ++H +HL++HGFLHL+G+DH+++KD +ME +E L+ I +PY Sbjct: 87 AKAQNKKIKDHYIHLVLHGFLHLMGHDHINEKDRLIMEKIEIKTLKLFNIQNPY 140 >gi|254247271|ref|ZP_04940592.1| hypothetical protein BCPG_02058 [Burkholderia cenocepacia PC184] gi|124872047|gb|EAY63763.1| hypothetical protein BCPG_02058 [Burkholderia cenocepacia PC184] Length = 270 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 90/164 (54%), Gaps = 14/164 (8%) Query: 9 PR-LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 PR L+L ++V+ +GDEI + K ++ I F +L++ F + Sbjct: 118 PRALELDLSVQ---YGDEITSDVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGENEG 171 Query: 68 ETLNFEYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YR D PTNVL+F A+ A+ DG ++GD+VL ++E EA+ GK H Sbjct: 172 RTLNAGYRHKDYPTNVLTF--AYDAAPDGT---VIGDLVLCCPVVEKEAHDQGKPLAAHY 226 Query: 127 VHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +D+DA ME LE IL LG +PY+ Sbjct: 227 AHLLVHGALHAQGYDHETNDEDAAEMEALEVDILAKLGFPNPYQ 270 >gi|300705109|ref|YP_003746712.1| metalloprotease [Ralstonia solanacearum CFBP2957] gi|299072773|emb|CBJ44128.1| Putative metalloprotease [Ralstonia solanacearum CFBP2957] Length = 254 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + +AL G R C K + I+ F +L++ F D TL Sbjct: 106 LDLTVQHGDALKG---AARKACPK--QKDIEAWIAPALFAD---AQLNVRFVDEEEGRTL 157 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D TNVL+F A D S+ D+VL ++E EA GK H HLI Sbjct: 158 NRTYRGKDYATNVLTFSYAETEHDPVSA----DVVLCCPVVEKEAKDQGKPLRAHYAHLI 213 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LH GYDH + +A MEG+E ++L +LG DPY Sbjct: 214 VHGALHAQGYDHENPAEAKEMEGIETAVLTELGFPDPY 251 >gi|317491141|ref|ZP_07949577.1| hypothetical protein HMPREF0864_00340 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920688|gb|EFV42011.1| hypothetical protein HMPREF0864_00340 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 164 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 86/159 (54%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA EN E R E V K F +E V + LV D Sbjct: 13 LDLQIACENTEGLPAEADFRLWLEAVLPK----------FQEEAEVTIRLV--DEAESHE 60 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA +H H+ Sbjct: 61 LNMTYRGKDKPTNVLSFP--FEAPPGIELPLLGDMIICRQVVEAEAKEQEITLLSHWAHM 118 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH+ D++A ME LE I+++LG DPY Sbjct: 119 VVHGSLHLLGYDHIIDEEAEEMEALEAEIMQELGYPDPY 157 >gi|329296078|ref|ZP_08253414.1| hypothetical protein Pstas_04461 [Plautia stali symbiont] Length = 157 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 89/160 (55%), Gaps = 17/160 (10%) Query: 11 LDLQIAV--ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+A EN L E F + + ++ F E+ V + LV D Sbjct: 6 LDLQLACADENGL---------PAEAAFQRWLEAAVTP--FQPESEVTIRLV--DEAESH 52 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E H H Sbjct: 53 ELNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAAEQGKSPEAHWAH 110 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH++D++A ME LE I+ LG DPY Sbjct: 111 MVVHGTLHLLGYDHIEDEEAEEMEALETEIMLALGYPDPY 150 >gi|325849563|ref|ZP_08170801.1| translation metalloprotein YbeY [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480044|gb|EGC83121.1| translation metalloprotein YbeY [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 154 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 6/121 (4%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGCS-----SLMLGD 103 V E E+SL F D +I LN ++RGID+ T+VLSFP F + D + LMLGD Sbjct: 32 VDEKKCEISLSFVDEIKIRDLNKDFRGIDRVTDVLSFPIEDFFNEDRKTLLEKPYLMLGD 91 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +V+ ++ +A LG FE +++L H LHLLGYDH++D D +M E+ ++++LG Sbjct: 92 VVICTDVARKQAKELGHSFEREIMYLTCHSILHLLGYDHMEDDDKKIMRSKEKQVMKNLG 151 Query: 164 I 164 + Sbjct: 152 V 152 >gi|198282886|ref|YP_002219207.1| hypothetical protein Lferr_0750 [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247407|gb|ACH83000.1| protein of unknown function UPF0054 [Acidithiobacillus ferrooxidans ATCC 53993] Length = 165 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 82/163 (50%), Gaps = 10/163 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 RL L++AV++ + + R +A+S S + I ELSL F + Sbjct: 3 RLYLRMAVDDVVAAMPLPPRGEVRRSILQALSA-PSARVSADDRIRELSLTFVGDAEMAA 61 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENH 125 LN YR PTN LSFP D L +LGDIV+A ++ EA GK +H Sbjct: 62 LNEGYRHKAAPTNCLSFP-----QDALPVLFRRDLLGDIVIAPAVVGREAAAQGKSLRDH 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL+IH LHLLGYDH DA ME LE +L ++G+ DPY Sbjct: 117 YRHLLIHSTLHLLGYDHELAADAQEMEALETRLLAEMGVADPY 159 >gi|15617041|ref|NP_240254.1| hypothetical protein BU442 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681793|ref|YP_002468179.1| hypothetical protein BUAP5A_435 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682348|ref|YP_002468732.1| hypothetical protein BUAPTUC7_436 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|25403623|pir||D84981 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039106|dbj|BAB13140.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622081|gb|ACL30237.1| hypothetical protein BUAPTUC7_436 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624636|gb|ACL30791.1| hypothetical protein BUAP5A_435 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 111 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 64/106 (60%), Gaps = 2/106 (1%) Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D I+ LNF YR +KPTN+LSFP F + +LGD+VL IIE E+ K Sbjct: 3 DEWEIKKLNFNYRKKNKPTNILSFP--FNKFIKINYKLLGDLVLCKNIIEKESLKYNKSL 60 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+H H+ IHG LHLLGYDH ++K+A +ME LE I+ L P+ Sbjct: 61 ESHWAHITIHGTLHLLGYDHQNNKEADIMERLENKIMLSLNYKKPH 106 >gi|167626246|ref|YP_001676746.1| hypothetical protein Fphi_0025 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189030202|sp|B0TXS6|RRMF_FRAP2 RecName: Full=Probable rRNA maturation factor gi|167596247|gb|ABZ86245.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 158 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 13/144 (9%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + L E FA L++ + + + V +S+V + I+ +N ++R DKPTN++SF Sbjct: 19 QDLLEKCFA-----LVADKHNISQAEVNVSIV--SNQEIQQINKQFRHKDKPTNIISF-- 69 Query: 89 AFASSDG----CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 F +G ++ GDIV+A E+++ EA K ++H H+ IHG LHLLGYDH+D Sbjct: 70 EFEKPEGLPEDIAANFWGDIVIAPEVLKKEAKEQNKNLDDHWQHIFIHGLLHLLGYDHID 129 Query: 145 DKDACVMEGLERSILEDLGINDPY 168 D +A ME LE +L +LGI +PY Sbjct: 130 DIEAEEMENLEIELLAELGIANPY 153 >gi|197335301|ref|YP_002155519.1| putative metalloprotease [Vibrio fischeri MJ11] gi|226702102|sp|B5FBL1|RRMF_VIBFM RecName: Full=Probable rRNA maturation factor gi|197316791|gb|ACH66238.1| putative metalloprotease [Vibrio fischeri MJ11] Length = 153 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 83/160 (51%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA EN E L T V + EL++ D Sbjct: 4 ELDLQIACENENGLPSEKDLMTWLNAVIPQFQPQ------------AELTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H Sbjct: 52 ELNHEYRGKDKPTNVLSFP--FEAPPGLELDLLGDLIICRQVVEEEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH++D +A ME LE +++ +G DPY Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETELMQGMGFEDPY 149 >gi|94309396|ref|YP_582606.1| unkown domain/putative metalloprotease fusion protein [Cupriavidus metallidurans CH34] gi|93353248|gb|ABF07337.1| putative metal-dependent hydrolase [Cupriavidus metallidurans CH34] Length = 245 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 65/113 (57%), Gaps = 4/113 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L++ F D TLN YRG D TNVL+F A+A +D + GDIVL ++E EA Sbjct: 133 LTVRFVDETEGRTLNRSYRGKDYATNVLTF--AYAEND--DDPVAGDIVLCCPVVESEAK 188 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K E H HLI+HG LH GY+H DD +A ME +E L+ LG DPY+ Sbjct: 189 AQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIETETLQALGFEDPYK 241 >gi|113969346|ref|YP_733139.1| putative metalloprotease [Shewanella sp. MR-4] gi|122944050|sp|Q0HLI5|RRMF_SHESM RecName: Full=Probable rRNA maturation factor gi|113884030|gb|ABI38082.1| protein of unknown function UPF0054 [Shewanella sp. MR-4] Length = 153 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/146 (42%), Positives = 84/146 (57%), Gaps = 11/146 (7%) Query: 33 EVVFAKAVSNLISKGYF---VKENI------VELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +V +A A L S+ F VK I EL++ DS + LN YRG DKPTNV Sbjct: 8 DVQYATASDYLPSEEQFALWVKTAIGNSMEQAELTIRIVDSRESQMLNSTYRGKDKPTNV 67 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 LSFP F + +LGD+V+ ++E EA K E H H+++HG LHLLGYDH+ Sbjct: 68 LSFP--FEAPPEIELPLLGDLVICATVVENEAREQDKTLEAHWAHMVVHGCLHLLGYDHI 125 Query: 144 DDKDACVMEGLERSILEDLGINDPYE 169 +D++A ME LE ++E LG DPY+ Sbjct: 126 EDEEAEEMESLETQLIESLGFTDPYK 151 >gi|153001814|ref|YP_001367495.1| putative metalloprotease [Shewanella baltica OS185] gi|304410290|ref|ZP_07391909.1| protein of unknown function UPF0054 [Shewanella baltica OS183] gi|307301999|ref|ZP_07581757.1| protein of unknown function UPF0054 [Shewanella baltica BA175] gi|166229104|sp|A6WRJ3|RRMF_SHEB8 RecName: Full=Probable rRNA maturation factor gi|151366432|gb|ABS09432.1| protein of unknown function UPF0054 [Shewanella baltica OS185] gi|304351699|gb|EFM16098.1| protein of unknown function UPF0054 [Shewanella baltica OS183] gi|306914037|gb|EFN44458.1| protein of unknown function UPF0054 [Shewanella baltica BA175] Length = 153 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 2/117 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 N EL++ DS + LN YRG DKPTNVLSFP F + +LGD+V+ ++E Sbjct: 37 NEAELTIRIVDSRESQMLNSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICAAVVE 94 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 EA K E H H+++HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 95 NEAREQQKTLEAHWAHMVVHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|145558828|sp|Q1LR89|RRMF_RALME RecName: Full=Probable rRNA maturation factor Length = 197 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 65/113 (57%), Gaps = 4/113 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L++ F D TLN YRG D TNVL+F A+A +D + GDIVL ++E EA Sbjct: 85 LTVRFVDETEGRTLNRSYRGKDYATNVLTF--AYAEND--DDPVAGDIVLCCPVVESEAK 140 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K E H HLI+HG LH GY+H DD +A ME +E L+ LG DPY+ Sbjct: 141 AQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIETETLQALGFEDPYK 193 >gi|107023630|ref|YP_621957.1| unkown domain/ metalloprotease fusion protein [Burkholderia cenocepacia AU 1054] gi|116690715|ref|YP_836338.1| putative metalloprotease [Burkholderia cenocepacia HI2424] gi|170734058|ref|YP_001766005.1| unkown domain/putative metalloprotease fusion protein [Burkholderia cenocepacia MC0-3] gi|105893819|gb|ABF76984.1| protein of unknown function UPF0054 [Burkholderia cenocepacia AU 1054] gi|116648804|gb|ABK09445.1| protein of unknown function UPF0054 [Burkholderia cenocepacia HI2424] gi|169817300|gb|ACA91883.1| protein of unknown function UPF0054 [Burkholderia cenocepacia MC0-3] Length = 258 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 14/164 (8%) Query: 9 PR-LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 PR L+L ++V+ +GDEI + K ++ I F +L++ F + Sbjct: 106 PRALELDLSVQ---YGDEITSDVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGENEG 159 Query: 68 ETLNFEYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YR D PTNVL+F A+ A+ DG ++GD+VL ++E EA+ GK H Sbjct: 160 RTLNAGYRHKDYPTNVLTF--AYDAAPDGT---VIGDLVLCCPVVEKEAHDQGKPLAAHY 214 Query: 127 VHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 215 AHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 258 >gi|145558836|sp|Q39D49|RRMF_BURS3 RecName: Full=Probable rRNA maturation factor Length = 172 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 84/163 (51%), Gaps = 15/163 (9%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ I F +L++ F Sbjct: 23 PELDLSVQ-----YGDEITSDVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGEEEGR 74 Query: 69 TLNFEYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 TLN YR D PTNVL+F A+ A+ DG ++GD+VL ++E EA+ GK H Sbjct: 75 TLNAGYRHKDYPTNVLTF--AYDAAPDGT---VIGDLVLCCPVVEKEAHEQGKPLTAHYA 129 Query: 128 HLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 130 HLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 172 >gi|254284310|ref|ZP_04959278.1| putative metalloprotease BUsg_427 [gamma proteobacterium NOR51-B] gi|219680513|gb|EED36862.1| putative metalloprotease BUsg_427 [gamma proteobacterium NOR51-B] Length = 162 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F++ V+ + G E+S+ I N +YR ++PTNVLSFP + Sbjct: 21 FSRWVNAALVSGQHAGCFTPEVSVRIAGEREITAFNQQYRDRNRPTNVLSFPASVPPE-- 78 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 S +LGDIV+ ++ EA E+H HL +HG LHLLG+DH+ D +A +ME LE Sbjct: 79 VESGLLGDIVICAPVVIAEAREQECSLESHWAHLTVHGTLHLLGFDHIRDDEAEIMEALE 138 Query: 156 RSILEDLGINDPY 168 S L +LG +PY Sbjct: 139 VSALAELGFGNPY 151 >gi|66047574|ref|YP_237415.1| putative metalloprotease [Pseudomonas syringae pv. syringae B728a] gi|75500575|sp|Q4ZN95|RRMF_PSEU2 RecName: Full=Probable rRNA maturation factor gi|63258281|gb|AAY39377.1| Protein of unknown function UPF0054 [Pseudomonas syringae pv. syringae B728a] gi|330969454|gb|EGH69520.1| metal-binding heat shock protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 166 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E + DE LR CE+ G + EL++ D L Sbjct: 4 LDLQVASETSA-PDEARLRLWCEM------------GLRQRSADSELTIRLVDETEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NNTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|294085155|ref|YP_003551915.1| putative metal-dependent hydrolase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664730|gb|ADE39831.1| Predicted metal-dependent hydrolase [Candidatus Puniceispirillum marinum IMCC1322] Length = 240 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/125 (44%), Positives = 67/125 (53%), Gaps = 13/125 (10%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLM-LGD 103 +SL+ +I LN ++RGIDK TNVLSFP A A D LGD Sbjct: 77 VSLLLCSDAKIRQLNHDHRGIDKATNVLSFPAADDDDMPYAMGAMDADDDNAPQRQELGD 136 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I +AY I EA +H+ HL HG LHLLGYDH D +A ME LE S+LE LG Sbjct: 137 IAIAYGICAREAEESSIRISDHITHLFGHGVLHLLGYDHDQDAEADAMEALEISLLEALG 196 Query: 164 INDPY 168 I +PY Sbjct: 197 IANPY 201 >gi|28871921|ref|NP_794540.1| hypothetical protein PSPTO_4806 [Pseudomonas syringae pv. tomato str. DC3000] gi|37999558|sp|Q87VX9|RRMF_PSESM RecName: Full=Probable rRNA maturation factor gi|28855174|gb|AAO58235.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] Length = 166 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E DE R CE+ G + EL++ D L Sbjct: 4 LDLQIASETPA-PDEARFRLWCEM------------GLRQRSADSELTIRLVDETEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|119504407|ref|ZP_01626487.1| Predicted metal-dependent hydrolase [marine gamma proteobacterium HTCC2080] gi|119459915|gb|EAW41010.1| Predicted metal-dependent hydrolase [marine gamma proteobacterium HTCC2080] Length = 163 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+ +++ + LN +R PTNVLSFP ++ C +LGDIV+ ++ EA Sbjct: 41 ELSIRISNTDEMTQLNQRFRNRSGPTNVLSFPADISAEIPCE--LLGDIVICSPLVWKEA 98 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GK H HL +HG LHLLGYDH D A ME LE IL+ G +DPY Sbjct: 99 QEQGKPPICHWAHLTVHGVLHLLGYDHETDDAAQNMEALETQILQQFGCSDPY 151 >gi|85713015|ref|ZP_01044053.1| Predicted metal-dependent hydrolase [Idiomarina baltica OS145] gi|85693184|gb|EAQ31144.1| Predicted metal-dependent hydrolase [Idiomarina baltica OS145] Length = 156 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL++ D +LN E+R D TNVLSFP F + +LGD+V+ +++E E Sbjct: 41 AELTVRVVDPAEGRSLNHEFRSKDYATNVLSFP--FEAPIEMPIPLLGDLVICAQVVERE 98 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 A+ K +H H++IHG LHLLGYDH++D +A ME +E+ L L I DPY+++ Sbjct: 99 ADEQQKPLMHHWTHMVIHGTLHLLGYDHIEDAEAEHMERIEKDALARLDIPDPYQIN 155 >gi|88705748|ref|ZP_01103458.1| Protein of unknown function, UPF0054 [Congregibacter litoralis KT71] gi|88700261|gb|EAQ97370.1| Protein of unknown function, UPF0054 [Congregibacter litoralis KT71] Length = 163 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 +A ++ G E +L D ++ LN +YR + PTNVLSFP + + Sbjct: 22 RAAETALTVGSPAAHGHWEAALRIVDEAEMQQLNAQYRARNTPTNVLSFPADLPAD--VT 79 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +LGDIV+ +++ EA GK H H+++HG LHLLG+DH D +A ME LE Sbjct: 80 LNLLGDIVICAPVVKKEATNQGKPLAAHWDHMLVHGVLHLLGFDHESDAEATHMESLETQ 139 Query: 158 ILEDLGINDPYEVD 171 L LG PY D Sbjct: 140 ALATLGWPCPYNAD 153 >gi|71909141|ref|YP_286728.1| hypothetical protein Daro_3529 [Dechloromonas aromatica RCB] gi|123626555|sp|Q47A73|RRMF_DECAR RecName: Full=Probable rRNA maturation factor gi|71848762|gb|AAZ48258.1| Protein of unknown function UPF0054 [Dechloromonas aromatica RCB] Length = 149 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 17/164 (10%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 N P L ++V+ A + + LR V +A+A L+ G E+++ D+ Sbjct: 3 NAPSNRLNLSVQYACNREGLPLRADF-VRWARAA--LVGGG--------EVTIRLVDADE 51 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 ++LN EYRG D TNVLSFP +++GD+V+ ++ EA K E H Sbjct: 52 GQSLNKEYRGKDYATNVLSFPY------DTEPVVMGDLVVCPSVVSKEAAEQNKPLEAHY 105 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL +HG LHL G+DH +D DA ME ER IL +G DPY V Sbjct: 106 AHLTVHGMLHLQGWDHDNDDDAQAMEDEEREILAAMGYPDPYAV 149 >gi|254251465|ref|ZP_04944783.1| hypothetical protein BDAG_00652 [Burkholderia dolosa AUO158] gi|124894074|gb|EAY67954.1| hypothetical protein BDAG_00652 [Burkholderia dolosa AUO158] Length = 270 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ I F + +L++ F Sbjct: 121 PELDLSVQ-----YGDEIAPDVRKTLPKRKLIAEWIEPALF---SSAQLTVRFVGEEEGR 172 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D PTNVL+F A ++GD+VL ++E EA GK + H H Sbjct: 173 TLNAGYRHKDYPTNVLTF----AYDPAPDGTVIGDLVLCCPVVEKEAQEQGKPLDAHYAH 228 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 229 LLVHGVLHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPY 269 >gi|149202104|ref|ZP_01879077.1| hypothetical protein RTM1035_12293 [Roseovarius sp. TM1035] gi|149144202|gb|EDM32233.1| hypothetical protein RTM1035_12293 [Roseovarius sp. TM1035] Length = 162 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 10/123 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------GCSSLMLGDIV 105 E+S++ D RI LN ++R +PTNVLS+P+ +++ LGDI Sbjct: 40 EISILACDDARIAVLNEDFRDKPQPTNVLSWPSEERAAEVSGVRPAPPMPSPDPELGDIA 99 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A++ EA K +H+ HLI+H LHLLGYDHV D+DA +ME E IL LG++ Sbjct: 100 IAWDTCVREAAEGEKPLADHVTHLIVHAVLHLLGYDHVRDQDATLMETTEVEILGKLGVS 159 Query: 166 DPY 168 DPY Sbjct: 160 DPY 162 >gi|325524865|gb|EGD02813.1| putative metalloprotease fusion protein [Burkholderia sp. TJI49] Length = 258 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 85/163 (52%), Gaps = 13/163 (7%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 L L+L ++V+ +GDEI + K ++ I F +L++ F Sbjct: 106 LRELELDLSVQ---YGDEITSEVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGEEEG 159 Query: 68 ETLNFEYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YR D PTNVL+F A+ A+ DG ++GD+VL ++E EA GK H Sbjct: 160 RTLNAGYRHKDYPTNVLTF--AYDAAPDGT---VIGDLVLCCPVVEKEAREQGKPLAAHY 214 Query: 127 VHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 215 AHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPY 257 >gi|330963482|gb|EGH63742.1| metal-binding heat shock protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 166 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E DE R CE+ G + EL++ D L Sbjct: 4 LDLQVASETPA-PDEARFRLWCEM------------GLRQRSADSELTIRLVDETEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|24372762|ref|NP_716804.1| putative metalloprotease [Shewanella oneidensis MR-1] gi|29428198|sp|Q8EHN9|RRMF_SHEON RecName: Full=Probable rRNA maturation factor gi|24346837|gb|AAN54249.1|AE015561_9 conserved hypothetical protein TIGR00043 [Shewanella oneidensis MR-1] Length = 153 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + V+ A D + + A+ N + + EL++ D+ + L Sbjct: 3 LDLALDVQYATTSDYLPSEEQLALWVKTAIGNSMKQA--------ELTIRIVDARESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NGTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICASVVENEAREQDKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYK 151 >gi|85705230|ref|ZP_01036329.1| hypothetical protein ROS217_17217 [Roseovarius sp. 217] gi|85670103|gb|EAQ24965.1| hypothetical protein ROS217_17217 [Roseovarius sp. 217] Length = 162 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 10/123 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIV 105 E+S++ D RI LN ++R +PTNVLS+P+ ++ LGDI Sbjct: 40 EISVLGCDDARIAALNEDFRDKPQPTNVLSWPSEERGAEAAGVRPGLPVSGPDPELGDIA 99 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A+E EA K +H+ HLI+H LHLLGYDH+ D+DA +ME E IL LG++ Sbjct: 100 IAWETCLREAAEGDKSLADHVTHLIVHAVLHLLGYDHLRDQDATLMETTEVEILGKLGVS 159 Query: 166 DPY 168 DPY Sbjct: 160 DPY 162 >gi|260427895|ref|ZP_05781874.1| conserved hypothetical protein [Citreicella sp. SE45] gi|260422387|gb|EEX15638.1| conserved hypothetical protein [Citreicella sp. SE45] Length = 159 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 52/120 (43%), Positives = 69/120 (57%), Gaps = 7/120 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCSSLM--LGDIVLAY 108 E++++ D RI LN ++R PTNVLS+P+ + G + LGDI +A+ Sbjct: 40 EIAILACDDARIAELNGDFRDKPAPTNVLSWPSEERDPEDLPEPGMPGMPEELGDIAIAW 99 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E EA K HL HLI+H LHLLGYDH+ D+DA VME LE IL LG+ +PY Sbjct: 100 ETCLREAQEQNKPLSAHLTHLIVHATLHLLGYDHIRDEDATVMETLEVEILGKLGVANPY 159 >gi|240949197|ref|ZP_04753541.1| putative metalloprotease [Actinobacillus minor NM305] gi|240296313|gb|EER46957.1| putative metalloprotease [Actinobacillus minor NM305] Length = 163 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 90/163 (55%), Gaps = 8/163 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +P +DLQIA EN+ + TL + K ++ E E+++ D Sbjct: 1 MTIPMIDLQIACENSENLPSLEQLTL----WVKTALAYEAQTEDFPET--EMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL IHG LHLLGYDH++D++A MEGLE I++ LG DPY Sbjct: 113 WAHLAIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPY 155 >gi|213966837|ref|ZP_03394988.1| conserved hypothetical protein TIGR00043 [Pseudomonas syringae pv. tomato T1] gi|301381968|ref|ZP_07230386.1| putative metalloprotease [Pseudomonas syringae pv. tomato Max13] gi|302058772|ref|ZP_07250313.1| putative metalloprotease [Pseudomonas syringae pv. tomato K40] gi|302135148|ref|ZP_07261138.1| putative metalloprotease [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928687|gb|EEB62231.1| conserved hypothetical protein TIGR00043 [Pseudomonas syringae pv. tomato T1] gi|330873561|gb|EGH07710.1| metal-binding heat shock protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 166 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E DE R CE+ G + EL++ D L Sbjct: 4 LDLQVASETPA-PDEARFRLWCEM------------GLRQRSADSELTIRLVDETEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|296282477|ref|ZP_06860475.1| metal-dependent hydrolase [Citromicrobium bathyomarinum JL354] Length = 160 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/120 (44%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-----SDGCSSLMLGDIVLAYE 109 +E S++FT ++ LN ++R DKPTNVLSFP + G +LGDI LAYE Sbjct: 38 LEASILFTSDAQVHELNRDWREKDKPTNVLSFPMLERDELIDLAPGGPPALLGDIALAYE 97 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 EA G E H HL++HG LHL G DH + DA ME LE L LG+ DPY Sbjct: 98 TCAREAAEKGIPLEAHASHLVVHGLLHLAGLDHEISPADAQEMEALEVKALALLGLPDPY 157 >gi|117919455|ref|YP_868647.1| putative metalloprotease [Shewanella sp. ANA-3] gi|145572749|sp|A0KTX2|RRMF_SHESA RecName: Full=Probable rRNA maturation factor gi|117611787|gb|ABK47241.1| protein of unknown function UPF0054 [Shewanella sp. ANA-3] Length = 153 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 11/146 (7%) Query: 33 EVVFAKAVSNLISKGYF---VKENI------VELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +V +A A L S+ F VK I EL++ D+ + LN YRG DKPTNV Sbjct: 8 DVQYATASDYLPSEDQFALWVKTAIGNSMEQAELTIRIVDARESQMLNSTYRGKDKPTNV 67 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 LSFP F + +LGD+V+ ++E EA K E H H+++HG LHLLGYDH+ Sbjct: 68 LSFP--FEAPPEIELPLLGDLVICAAVVENEAREQDKTLEAHWAHMVVHGCLHLLGYDHI 125 Query: 144 DDKDACVMEGLERSILEDLGINDPYE 169 +D++A ME LE ++E LG DPY+ Sbjct: 126 EDEEAEEMESLETQLIESLGFTDPYK 151 >gi|330953008|gb|EGH53268.1| metal-binding heat shock protein [Pseudomonas syringae Cit 7] Length = 166 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E + DE R CE+ G + EL++ D L Sbjct: 4 LDLQIASETSA-PDEARFRLWCEM------------GLRQRSADSELTIRLVDETEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|51595458|ref|YP_069649.1| metalloprotease [Yersinia pseudotuberculosis IP 32953] gi|153949147|ref|YP_001401879.1| metalloprotease [Yersinia pseudotuberculosis IP 31758] gi|186894489|ref|YP_001871601.1| putative metalloprotease [Yersinia pseudotuberculosis PB1/+] gi|59799101|sp|Q66DD5|RRMF_YERPS RecName: Full=Probable rRNA maturation factor gi|166988546|sp|A7FKV1|RRMF_YERP3 RecName: Full=Probable rRNA maturation factor gi|238691434|sp|B2K894|RRMF_YERPB RecName: Full=Probable rRNA maturation factor gi|51588740|emb|CAH20351.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|152960642|gb|ABS48103.1| conserved hypothetical protein TIGR00043 [Yersinia pseudotuberculosis IP 31758] gi|186697515|gb|ACC88144.1| protein of unknown function UPF0054 [Yersinia pseudotuberculosis PB1/+] Length = 157 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 2/117 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E+++ D LN YRG DK TNVLSFP F + +LGD+++ +++ Sbjct: 36 QPVSEVTIRLVDEAESHDLNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVV 93 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E EA K H H+++HG LHLLGYDH+DD +A ME +E I+ LG DPY Sbjct: 94 EKEAIEQEKALLAHWAHMVVHGSLHLLGYDHIDDDEAEEMELIETEIMHGLGYPDPY 150 >gi|218889735|ref|YP_002438599.1| putative metalloprotease [Pseudomonas aeruginosa LESB58] gi|226696066|sp|B7V9D4|RRMF_PSEA8 RecName: Full=Probable rRNA maturation factor gi|218769958|emb|CAW25720.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 160 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 78/161 (48%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E R CE+ + + EL++ D L Sbjct: 5 LDLQVASAAPDLPSEAQFRAWCELALRQRPES-------------ELTIRLVDEAEGLEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D TNVLSF A + +LGD+V+ ++ EA K + H HL+ Sbjct: 52 NSTYRHKDYATNVLSF-LADVPDELLDIPLLGDLVICAPVVAREALEQRKPLQAHWAHLV 110 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 111 IHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|167585514|ref|ZP_02377902.1| hypothetical protein BuboB_09264 [Burkholderia ubonensis Bu] Length = 259 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + + + GD +R C K ++ I+ F +L++ F Sbjct: 110 PELDLAVQYGDEITGD---VRKACPK--RKLIAEWIAPALFAD---AQLTVRFVGEEEGR 161 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +LN YR D PTNVL+F A + ++GD+VL ++E EA GK + H H Sbjct: 162 SLNDSYRHKDYPTNVLTF----AYDEAPDGTVIGDLVLCCPVVEKEAREQGKPLDAHYAH 217 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 218 LLVHGVLHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPY 258 >gi|238795392|ref|ZP_04638907.1| metalloprotease [Yersinia mollaretii ATCC 43969] gi|238720511|gb|EEQ12312.1| metalloprotease [Yersinia mollaretii ATCC 43969] Length = 127 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 2/117 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E+++ D LN YRG DK TNVLSFP F + +LGD+++ +++ Sbjct: 6 QAVSEVTIRLVDEAESHELNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVV 63 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E EA K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 64 EQEAVEQEKALFAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 120 >gi|145572766|sp|Q1BTS1|RRMF_BURCA RecName: Full=Probable rRNA maturation factor gi|145572773|sp|A0KAB8|RRMF_BURCH RecName: Full=Probable rRNA maturation factor Length = 172 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 14/164 (8%) Query: 9 PR-LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 PR L+L ++V+ +GDEI + K ++ I F +L++ F + Sbjct: 20 PRALELDLSVQ---YGDEITSDVRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGENEG 73 Query: 68 ETLNFEYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YR D PTNVL+F A+ A+ DG ++GD+VL ++E EA+ GK H Sbjct: 74 RTLNAGYRHKDYPTNVLTF--AYDAAPDGT---VIGDLVLCCPVVEKEAHDQGKPLAAHY 128 Query: 127 VHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 129 AHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 172 >gi|217972291|ref|YP_002357042.1| putative metalloprotease [Shewanella baltica OS223] gi|254799938|sp|B8E6K8|RRMF_SHEB2 RecName: Full=Probable rRNA maturation factor gi|217497426|gb|ACK45619.1| protein of unknown function UPF0054 [Shewanella baltica OS223] Length = 153 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/115 (46%), Positives = 72/115 (62%), Gaps = 2/115 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL++ DS + LN YRG DKPTNVLSFP F + +LGD+V+ ++E E Sbjct: 39 AELTIRIVDSRESQMLNSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICAAVVENE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 A K E H H+++HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 97 AREQQKTLEAHWAHMVVHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|256545613|ref|ZP_05472971.1| metalloprotease [Anaerococcus vaginalis ATCC 51170] gi|256398690|gb|EEU12309.1| metalloprotease [Anaerococcus vaginalis ATCC 51170] Length = 164 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 6/121 (4%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGCS-----SLMLGD 103 + E E+SL F D +I LN ++R ID+ T+VLSFP F + D + LMLGD Sbjct: 42 IDEKKCEISLSFVDEEKIRQLNKDFRSIDRVTDVLSFPIEDFFNEDRENILEKPYLMLGD 101 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +V+ ++ +A+ LG FE +++L H LHLLGYDH++D D +M E+ ++++LG Sbjct: 102 VVICLDVARKQADDLGHSFEREVMYLTCHSILHLLGYDHIEDDDKKIMRKREKEVMKNLG 161 Query: 164 I 164 + Sbjct: 162 V 162 >gi|255319764|ref|ZP_05360969.1| putative metalloprotease [Acinetobacter radioresistens SK82] gi|262380298|ref|ZP_06073452.1| metal-dependent hydrolase [Acinetobacter radioresistens SH164] gi|255303083|gb|EET82295.1| putative metalloprotease [Acinetobacter radioresistens SK82] gi|262297744|gb|EEY85659.1| metal-dependent hydrolase [Acinetobacter radioresistens SH164] Length = 159 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L ++++ E+ L+ + K V + VK++ E+ + D + + L Sbjct: 1 MKLSLSLQQTFVAPELVLKR----AYLKKVIETTLRHLDVKQD-CEIGIACVDLDQSQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR DKPTNVLSFP+ ++ LGD+V+ ++ EA K H H Sbjct: 56 NLEYRRKDKPTNVLSFPSEIPEEILPMLAARPLGDLVICIPVVLQEAAEQQKVPVEHFTH 115 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 +++HG LHLLGYDH + D+DA ME LE IL LG+N+PY+ Sbjct: 116 MLVHGTLHLLGYDHEISDEDADEMEALEIEILAKLGLNNPYQ 157 >gi|289675769|ref|ZP_06496659.1| putative metalloprotease [Pseudomonas syringae pv. syringae FF5] gi|330895568|gb|EGH27876.1| metal-binding heat shock protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330976850|gb|EGH76881.1| metal-binding heat shock protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 166 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E + DE R CE+ G + EL++ D L Sbjct: 4 LDLQIASETSA-PDEARFRLWCEM------------GLRQRSADSELTIRLVDETEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NNTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSIDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|192359229|ref|YP_001982117.1| hypothetical protein CJA_1637 [Cellvibrio japonicus Ueda107] gi|254800588|sp|B3PER3|RRMF_CELJU RecName: Full=Probable rRNA maturation factor gi|190685394|gb|ACE83072.1| hypothetical protein CJA_1637 [Cellvibrio japonicus Ueda107] Length = 177 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 2/115 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+S+ D+ LN EYR D TNVLSFP +LGD+V+ ++E E Sbjct: 39 AEVSVYIVDTDEGRDLNREYRERDYATNVLSFPADIPPE--VEIPLLGDLVVCAPVVEHE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 A+ K + H H++IHG LHLLGYDH+D+ +A ME LE +L LG DPY+ Sbjct: 97 ADEQHKPLDAHWAHMLIHGSLHLLGYDHIDNDEAETMEALETQLLARLGYADPYD 151 >gi|171321299|ref|ZP_02910261.1| protein of unknown function UPF0054 [Burkholderia ambifaria MEX-5] gi|171093426|gb|EDT38609.1| protein of unknown function UPF0054 [Burkholderia ambifaria MEX-5] Length = 261 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 87/168 (51%), Gaps = 16/168 (9%) Query: 6 VNLPR-LDLQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 N PR L+ ++V+ +GDEI +R C K ++ I F + +L++ F Sbjct: 106 ANEPRELEFDLSVQ---YGDEITGDVRKACPK--RKLIAEWIEPALF---SSAQLTVRFV 157 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 TLN YR D PTNVL+F A ++GD+VL ++E EA+ GK Sbjct: 158 GEEEGRTLNDGYRHKDYPTNVLTF----AYDPAPDGTVIGDLVLCCPVVEKEAHEQGKPL 213 Query: 123 ENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 H HL++HG LH GYDH D+DA ME LE +IL LG +PY+ Sbjct: 214 AAHYAHLLVHGALHAQGYDHETSDEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|254419922|ref|ZP_05033646.1| conserved hypothetical protein TIGR00043, putative [Brevundimonas sp. BAL3] gi|196186099|gb|EDX81075.1| conserved hypothetical protein TIGR00043, putative [Brevundimonas sp. BAL3] Length = 154 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 5/113 (4%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ TD + LN +R D+PTNVLSFP +++ LGDIVLAY + EA Sbjct: 39 VLLTDDEAVRELNARFRDKDRPTNVLSFPAPESAAP-----HLGDIVLAYGVCASEAQAQ 93 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HL++HG LHLLG DH DD +A ME ER IL +LG++DPY D Sbjct: 94 GKTLSDHLSHLVVHGVLHLLGRDHEDDAEAEEMEAEEREILAELGVSDPYAAD 146 >gi|330944991|gb|EGH46777.1| metal-binding heat shock protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 166 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E + DE R CE+ G + EL++ D L Sbjct: 4 LDLQIASETSA-PDEARFRLWCEM------------GLRQRSADSELTIRLVDETEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NNTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSIDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|300113053|ref|YP_003759628.1| hypothetical protein Nwat_0337 [Nitrosococcus watsonii C-113] gi|299538990|gb|ADJ27307.1| protein of unknown function UPF0054 [Nitrosococcus watsonii C-113] Length = 153 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 68/114 (59%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ TD + LN YR + TN+LSFP S +LGD+++ ++ EA Sbjct: 38 EVTIRVTDENEAAELNRRYRRKEGATNILSFPFEIPSCVPFDIPLLGDLIICAPVVAREA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K+ ++H HL++HG LHLLG+DH + +A ME LE +ILE LG +DPYE Sbjct: 98 LEQAKKEQDHWAHLVVHGVLHLLGFDHQQEVEAQQMEALEVTILESLGYSDPYE 151 >gi|218666487|ref|YP_002425087.1| conserved hypothetical protein TIGR00043 [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518700|gb|ACK79286.1| conserved hypothetical protein TIGR00043 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 158 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/121 (43%), Positives = 65/121 (53%), Gaps = 9/121 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLA 107 + I ELSL F + LN YR PTN LSFP D L +LGDIV+A Sbjct: 37 DRIRELSLTFVGDAEMAALNEGYRHKAAPTNCLSFP-----QDALPVLFRRDLLGDIVIA 91 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 ++ EA GK +H HL+IH LHLLGYDH DA ME LE +L ++G+ DP Sbjct: 92 PAVVGREAAAQGKSLRDHYRHLLIHSTLHLLGYDHELAADAQEMEALETRLLAEMGVADP 151 Query: 168 Y 168 Y Sbjct: 152 Y 152 >gi|120597877|ref|YP_962451.1| putative metalloprotease [Shewanella sp. W3-18-1] gi|146293951|ref|YP_001184375.1| putative metalloprotease [Shewanella putrefaciens CN-32] gi|145572750|sp|A1RGV2|RRMF_SHESW RecName: Full=Probable rRNA maturation factor gi|166200358|sp|A4Y9E3|RRMF_SHEPC RecName: Full=Probable rRNA maturation factor gi|120557970|gb|ABM23897.1| protein of unknown function UPF0054 [Shewanella sp. W3-18-1] gi|145565641|gb|ABP76576.1| protein of unknown function UPF0054 [Shewanella putrefaciens CN-32] gi|319427328|gb|ADV55402.1| protein of unknown function UPF0054 [Shewanella putrefaciens 200] Length = 153 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 2/115 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL++ DS + LN YRG DKPTNVLSFP F + +LGD+V+ ++E E Sbjct: 39 AELTIRIVDSRESQMLNSTYRGKDKPTNVLSFP--FEAPAEIELPLLGDLVICAAVVENE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 A K E H H+++HG LHLLGYDH++D++A ME LE ++E LG +PY+ Sbjct: 97 AREQNKTLEAHWAHMVVHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTNPYK 151 >gi|165976379|ref|YP_001651972.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251112|ref|ZP_07337298.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|165876480|gb|ABY69528.1| hypothetical protein APJL_0970 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650122|gb|EFL80292.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 163 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 89/163 (54%), Gaps = 8/163 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN+ + TL A++ F + E+++ D Sbjct: 1 MTTPMIDLQIACENSENLPSLEQLTLW---VQTALAYEAQTEDFPE---TEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL IHG LHLLGYDH++D++A MEGLE I++ LG DPY Sbjct: 113 WAHLAIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPY 155 >gi|206559302|ref|YP_002230063.1| unkown domain/putative metalloprotease fusion protein [Burkholderia cenocepacia J2315] gi|198035340|emb|CAR51215.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 258 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 89/164 (54%), Gaps = 14/164 (8%) Query: 9 PR-LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 PR L+L ++V+ +GDEI + K ++ + F +L++ F + Sbjct: 106 PRALELDLSVQ---YGDEITSDVRKTLPKRKLIAEWLEPALFAS---AQLTVRFVGENEG 159 Query: 68 ETLNFEYRGIDKPTNVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YR D PTNVL+F A+ A+ DG ++GD+VL ++E EA+ GK H Sbjct: 160 RTLNAGYRHKDYPTNVLTF--AYDAAPDGT---VIGDLVLCCPVVEKEAHDQGKPLMAHY 214 Query: 127 VHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 215 AHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 258 >gi|238755073|ref|ZP_04616421.1| metalloprotease [Yersinia ruckeri ATCC 29473] gi|238706777|gb|EEP99146.1| metalloprotease [Yersinia ruckeri ATCC 29473] Length = 127 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D LN YRG DK TNVLSFP F + +LGD+++ +++E EA Sbjct: 10 EVTIRVVDEAESHELNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQEA 67 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 68 VEQNKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQGLGYPDPY 120 >gi|126175463|ref|YP_001051612.1| putative metalloprotease [Shewanella baltica OS155] gi|166229097|sp|A3D7N0|RRMF_SHEB5 RecName: Full=Probable rRNA maturation factor gi|125998668|gb|ABN62743.1| protein of unknown function UPF0054 [Shewanella baltica OS155] Length = 153 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 2/115 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL++ D+ + LN YRG DKPTNVLSFP F + +LGD+V+ ++E E Sbjct: 39 AELTIRIVDTRESQMLNSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICAAVVENE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 A K E H H+++HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 97 AREQQKTLEAHWAHMVVHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|17545248|ref|NP_518650.1| metalloprotease [Ralstonia solanacearum GMI1000] gi|17427539|emb|CAD14057.1| hypothetical protein RSc0529 [Ralstonia solanacearum GMI1000] Length = 255 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 61/114 (53%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +L++ F D TLN YRG D TNVL+F A D ++ DIVL ++E E Sbjct: 143 AQLNVRFVDEEEGRTLNHTYRGKDYATNVLTFSYAETEDDPVAA----DIVLCCPVVEQE 198 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK H HLI+HG LH GYDH D A MEG+E +L LG DPY Sbjct: 199 AKDQGKPLRAHYAHLIVHGALHAQGYDHEDPAQAEEMEGIETEVLAGLGFPDPY 252 >gi|237746579|ref|ZP_04577059.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377930|gb|EEO28021.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 176 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 25/139 (17%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------------------------TAF 90 +++L F D+ LN +YRG D TNVL+FP T+ Sbjct: 39 ADITLRFVDAEEGRALNRDYRGKDYATNVLTFPYDDMEAFDLSAIGLSGDDPAPLELTSL 98 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 A+S G + DIVL +++E EA K + H HL++HG LH GYDH +D +A Sbjct: 99 ATSPGAQTAR-ADIVLCTDVLEAEAKEQAKSLDAHAAHLVVHGVLHAQGYDHTNDAEAGE 157 Query: 151 MEGLERSILEDLGINDPYE 169 ME LE IL LG DPY Sbjct: 158 METLETKILAKLGYPDPYR 176 >gi|90022942|ref|YP_528769.1| lipoate-protein ligase B [Saccharophagus degradans 2-40] gi|123090090|sp|Q21FH2|RRMF_SACD2 RecName: Full=Probable rRNA maturation factor gi|89952542|gb|ABD82557.1| protein of unknown function UPF0054 [Saccharophagus degradans 2-40] Length = 149 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 2/116 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 N ELS+ D + LN +YRG DK TNVLSFP DG +LGD+V+ +++ Sbjct: 36 NEAELSIRIVDEDESQALNLQYRGKDKSTNVLSFPCEL--PDGVELPLLGDLVICAQVVA 93 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK H H+++HG LHLLGYDH++D +A ME +E +L +LG +PY Sbjct: 94 KEALEQGKLLHAHWAHMVVHGTLHLLGYDHIEDGEAEEMEAIEIQVLLELGYPNPY 149 >gi|325267029|ref|ZP_08133699.1| metal-dependent hydrolase [Kingella denitrificans ATCC 33394] gi|324981529|gb|EGC17171.1| metal-dependent hydrolase [Kingella denitrificans ATCC 33394] Length = 167 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 8/119 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAYE 109 ELSLV D N +YRG D TNVLSF + FA + + GD+++ + Sbjct: 52 AELSLVLLDEEEARAYNRDYRGKDYATNVLSFALNEGESMFADTQDT---LYGDLIICPQ 108 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++ EA GK +H HL+IHG LHL+G+DH++D+DA ME LE +L L I +PY Sbjct: 109 VVAREAAEQGKPLHHHFAHLVIHGTLHLMGFDHIEDEDADQMEALEIELLRQLNIPNPY 167 >gi|299067910|emb|CBJ39124.1| Putative metalloprotease [Ralstonia solanacearum CMR15] Length = 255 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 61/114 (53%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +L++ F D TLN YRG D TNVL+F A D ++ DIVL ++E E Sbjct: 143 AQLNVRFVDEEEGRTLNHTYRGKDYATNVLTFSYAETEDDPVAA----DIVLCCPVVEKE 198 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK H HLI+HG LH GYDH D A MEG+E +L LG DPY Sbjct: 199 AKDQGKPLRAHYAHLIVHGALHAQGYDHEDPAQAEEMEGIETEVLAGLGFPDPY 252 >gi|146310843|ref|YP_001175917.1| putative metalloprotease [Enterobacter sp. 638] gi|166977725|sp|A4W836|RRMF_ENT38 RecName: Full=Probable rRNA maturation factor gi|145317719|gb|ABP59866.1| protein of unknown function UPF0054 [Enterobacter sp. 638] Length = 155 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E+ E E F K + +I + F +E+ E+++ D L Sbjct: 6 LDLQLACEDNSGLPE-------ESQFQKWLDAVIPQ--FQEES--EVTIRVVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA K + H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAKEQQKPLDAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH++D++A ME LE I+ LG DPY Sbjct: 113 IHGSLHLLGYDHIEDEEAEEMESLETEIMLALGYEDPY 150 >gi|90581603|ref|ZP_01237394.1| hypothetical protein VAS14_00556 [Vibrio angustum S14] gi|90437186|gb|EAS62386.1| hypothetical protein VAS14_00556 [Vibrio angustum S14] Length = 154 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 74/114 (64%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN EYRG D+PTNVLSFP F + G +LGD+++ +++E E Sbjct: 38 AEVTIRLVDEKESHALNLEYRGKDRPTNVLSFP--FEAPPGMELELLGDLIICRQVVEKE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K + H H+++HG LHLLGYDH++D++A MEGLE I++++G DPY Sbjct: 96 ALEQNKPLKAHWAHMVVHGSLHLLGYDHIEDEEAEEMEGLETEIMQNMGFVDPY 149 >gi|114046573|ref|YP_737123.1| putative metalloprotease [Shewanella sp. MR-7] gi|123131666|sp|Q0HXT9|RRMF_SHESR RecName: Full=Probable rRNA maturation factor gi|113888015|gb|ABI42066.1| protein of unknown function UPF0054 [Shewanella sp. MR-7] Length = 153 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + V+ A D + + A+ N + + EL++ D+ + L Sbjct: 3 LDLALDVQYATASDYLPSEEQFSLWVKTAIGNSMEQA--------ELTIRIVDARESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICAAVVENEAREQDKILEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYK 151 >gi|253999827|ref|YP_003051890.1| hypothetical protein Msip34_2121 [Methylovorus sp. SIP3-4] gi|253986506|gb|ACT51363.1| protein of unknown function UPF0054 [Methylovorus sp. SIP3-4] Length = 155 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL+L D LN +YRG D TNVL+FP ++GDI+L ++ E Sbjct: 35 TELALRIVDEDEGRALNRDYRGKDYATNVLTFPLTEEPH------LMGDIILCAPVVARE 88 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 A GK E H HL +HG LHL GYDH + A +MEGLE I+ LG +DPY + Sbjct: 89 AAEQGKPIEAHYAHLTVHGVLHLHGYDHETEPQAELMEGLETEIVTKLGYSDPYAAE 145 >gi|331014757|gb|EGH94813.1| metal-binding heat shock protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 166 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E DE R CE+ G + EL++ D L Sbjct: 4 LDLQVASETPA-PDEALFRLWCEM------------GLRQRSADSELTIRLVDETEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|220935458|ref|YP_002514357.1| metal-dependent hydrolase [Thioalkalivibrio sp. HL-EbGR7] gi|219996768|gb|ACL73370.1| metal-dependent hydrolase [Thioalkalivibrio sp. HL-EbGR7] Length = 149 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 2/100 (2%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR PTNVLSFP F + + LGD+V+ ++ EA GK E H H+ Sbjct: 52 LNGTYRHKQGPTNVLSFP--FEAPPEFAEGHLGDLVICAPVVLREAAEQGKTAEAHWAHM 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +IHG LHL G+DH++D +A ME LE+ IL LG +PYE Sbjct: 110 VIHGMLHLQGHDHIEDAEAARMEALEKEILSGLGYENPYE 149 >gi|313201801|ref|YP_004040459.1| hypothetical protein MPQ_2072 [Methylovorus sp. MP688] gi|312441117|gb|ADQ85223.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 150 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL+L D LN +YRG D TNVL+FP ++GDI+L ++ E Sbjct: 30 TELALRIVDEDEGRALNRDYRGKDYATNVLTFPLTEEPH------LMGDIILCAPVVARE 83 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 A GK E H HL +HG LHL GYDH + A +MEGLE I+ LG +DPY + Sbjct: 84 AAEQGKPIEAHYAHLTVHGVLHLHGYDHETEPQAELMEGLETEIVTKLGYSDPYAAE 140 >gi|167630510|ref|YP_001681009.1| hypothetical protein HM1_2448 [Heliobacterium modesticaldum Ice1] gi|238687861|sp|B0TAE8|RRMF_HELMI RecName: Full=Probable rRNA maturation factor gi|167593250|gb|ABZ84998.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 166 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 10/138 (7%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--------F 90 A + L GY +++ E+SLV T+ +I LN EYR ID+PT+VLSF F Sbjct: 30 AFACLEEVGYPLED--TEISLVLTNDEKIRRLNAEYRNIDQPTDVLSFAMEEGLDDEADF 87 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D + +LGDI+++ E E +A G E + L +HG LHLLGYDH D++ Sbjct: 88 HFDDPTAGKVLGDIIISVETAERQAQEYGHSLEREMGFLFVHGMLHLLGYDHCDEEQRSR 147 Query: 151 MEGLERSILEDLGINDPY 168 M LE IL + G+ + Sbjct: 148 MRALEEKILRNQGLQREW 165 >gi|144899563|emb|CAM76427.1| Uncharacterized protein family UPF005 [Magnetospirillum gryphiswaldense MSR-1] Length = 172 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 12/165 (7%) Query: 11 LDLQIAVENALWGDEI-HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ I++E+ W + LC + ++ L + G VE+S+V T + Sbjct: 5 IDVAISIEDEAWTQALPGAEELCRTMV---LATLQAAGGDFDGPPVEVSVVLTSDTAVHA 61 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC-----SSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN ++RG DKPTNVLSF A D + ++LGD+++AY + EA GK + Sbjct: 62 LNRDWRGQDKPTNVLSF--AGLDDDEAPVVVGAPVLLGDVIMAYGVCTQEARDQGKTLAH 119 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEG-LERSILEDLGINDPY 168 H HL++HG LHLLG+DH +D+ LE IL GI DPY Sbjct: 120 HAAHLVVHGTLHLLGWDHEEDETEAEEMERLETVILSGFGIADPY 164 >gi|223041409|ref|ZP_03611612.1| putative metal-dependent hydrolase [Actinobacillus minor 202] gi|190692223|gb|ACE87879.1| putative metal-dependent hydrolase [Actinobacillus minor 202] Length = 163 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/164 (40%), Positives = 92/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F V ++ +E E+++ D Sbjct: 1 MTTPIIDLQIACENSE-----NLPSLEQ--FMLWVQTALAYEAQTEEFPETEMTIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+ Sbjct: 54 AESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D++A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPY 155 >gi|114571574|ref|YP_758254.1| hypothetical protein Mmar10_3035 [Maricaulis maris MCS10] gi|122314893|sp|Q0AK77|RRMF_MARMM RecName: Full=Probable rRNA maturation factor gi|114342036|gb|ABI67316.1| protein of unknown function UPF0054 [Maricaulis maris MCS10] Length = 160 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 11/152 (7%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 VE+ W L E + A L + V ++++ + ++N ++RG Sbjct: 8 VEDDAWSSLAGKTRLVEEAISAACKELPDRTPGV------VAILLGGDEGVASMNAQFRG 61 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 TNVLSFP + + LGDI LA+ +I+ EA +HL HLIIHGFLH Sbjct: 62 KAGATNVLSFPAGEHADN-----HLGDIALAHGVIQREAEDRDIALADHLRHLIIHGFLH 116 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L G+DH D +A VME +ER L LG+ DPY Sbjct: 117 LQGFDHQQDDEAEVMEAIERRALARLGVADPY 148 >gi|46577519|sp|Q8Y208|RRMF_RALSO RecName: Full=Probable rRNA maturation factor Length = 187 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 66/131 (50%), Gaps = 7/131 (5%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K + I+ F +L++ F D TLN YRG D TNVL+F A D + Sbjct: 61 KDIEAWIAPALFAD---AQLNVRFVDEEEGRTLNHTYRGKDYATNVLTFSYAETEDDPVA 117 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + DIVL ++E EA GK H HLI+HG LH GYDH D A MEG+E Sbjct: 118 A----DIVLCCPVVEQEAKDQGKPLRAHYAHLIVHGALHAQGYDHEDPAQAEEMEGIETE 173 Query: 158 ILEDLGINDPY 168 +L LG DPY Sbjct: 174 VLAGLGFPDPY 184 >gi|255262455|ref|ZP_05341797.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255104790|gb|EET47464.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 163 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 12/148 (8%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AF 90 A ++ + + ++ +S++ D RI+ LN ++R D TNVLS+P A Sbjct: 16 ALASRAADAVFDAVGLDRDVWLVSVLACDDARIQVLNADFREKDGATNVLSWPAQDLAAV 75 Query: 91 ASSDGCSSLM--------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + D + + LGD+ ++++ EA +F++H+ HL+IHG LHLLGYDH Sbjct: 76 GAGDKPDAPVPDPMGESELGDVAISFDTCAREAAEAACDFDDHVAHLMIHGTLHLLGYDH 135 Query: 143 VDDKDACVMEGLERSILEDLGINDPYEV 170 + D DA +ME LE IL LG+ DPY V Sbjct: 136 IRDADATLMETLEVQILGKLGLCDPYTV 163 >gi|238752612|ref|ZP_04614085.1| metalloprotease [Yersinia rohdei ATCC 43380] gi|238709203|gb|EEQ01448.1| metalloprotease [Yersinia rohdei ATCC 43380] Length = 117 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +++ D LN YRG DK TNVLSFP F + +LGD+++ +++E EA Sbjct: 1 MTIRIVDEAESHELNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQEAI 58 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 59 EQEKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 110 >gi|330987618|gb|EGH85721.1| metal-binding heat shock protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 166 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E + D+ R CE+ G + EL++ D + L Sbjct: 4 LDLQIASETSA-PDKARFRLWCEM------------GLRQRSADSELTIRLVDENEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG PY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPAPYAED 150 >gi|330811910|ref|YP_004356372.1| hypothetical protein PSEBR_a4946 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380018|gb|AEA71368.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 152 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E+A E R CE+ + ++ EL++ D L Sbjct: 4 LDLQVACEHAA-PSEAQFRQWCELALRQRSAD------------SELTIRLVDEPEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R D TNVLSFP A + +LGD+V+ ++E EA K E H HL+ Sbjct: 51 NHTWRQKDYATNVLSFP-ADVPDELLDIPLLGDLVICVPVVEREAAEQDKTPEAHWAHLV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH++D +A ME LER++L +LG DPY D Sbjct: 110 IHGCLHLLGYDHIEDDEAEEMEALERTLLAELGHPDPYAGD 150 >gi|257092863|ref|YP_003166504.1| hypothetical protein CAP2UW1_1247 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045387|gb|ACV34575.1| protein of unknown function UPF0054 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 144 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 7/117 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++++ F D+ LN +YR D TNVLSFP A ++ GD+VL ++ EA Sbjct: 33 QITVRFVDADEARRLNRDYRHRDYATNVLSFPYAR------EPVVCGDLVLCAPVVAREA 86 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HLI+HG LHL GYDH + A ME ER +L LG DPY ++ Sbjct: 87 AEQGKPLEAHYAHLIVHGLLHLQGYDHETSARQAAEMESRERRVLHALGYPDPYAME 143 >gi|170719818|ref|YP_001747506.1| putative metalloprotease [Pseudomonas putida W619] gi|229890245|sp|B1J201|RRMF_PSEPW RecName: Full=Probable rRNA maturation factor gi|169757821|gb|ACA71137.1| protein of unknown function UPF0054 [Pseudomonas putida W619] Length = 157 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ A + A D+ LR CE+ + ++ E+++ D L Sbjct: 4 LDLQRATDAAT-PDDAALRAWCELALRQRSAD------------SEMTIRLVDEAEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D TNVLSFP A + +LGD+V+ ++E EA GK + H HL+ Sbjct: 51 NHTYRHKDYATNVLSFP-ADVPDELLDIPLLGDLVICVPVVEREAAEQGKSLQAHWAHLV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH++D +A ME LER +L +LG DPY D Sbjct: 110 IHGCLHLLGYDHIEDDEAEEMEALERELLAELGHPDPYADD 150 >gi|170703554|ref|ZP_02894307.1| protein of unknown function UPF0054 [Burkholderia ambifaria IOP40-10] gi|170131542|gb|EDT00117.1| protein of unknown function UPF0054 [Burkholderia ambifaria IOP40-10] Length = 261 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 16/165 (9%) Query: 9 PR-LDLQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 PR L+L ++V+ +GDEI +R C K ++ I F + +L++ F Sbjct: 109 PRELELDLSVQ---YGDEITGDVRKACPKR--KLIAEWIEPALF---SSAQLTVRFVGEE 160 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YR D PTNVL+F A ++GD+VL ++E EA GK H Sbjct: 161 EGRTLNDGYRHKDYPTNVLTF----AYDPAPDGTVIGDLVLCCPVVEKEAQEQGKPLAAH 216 Query: 126 LVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH ++DA ME LE +IL LG +PY+ Sbjct: 217 YAHLLVHGALHAQGYDHETSEEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|89074962|ref|ZP_01161407.1| hypothetical protein SKA34_20817 [Photobacterium sp. SKA34] gi|89049201|gb|EAR54765.1| hypothetical protein SKA34_20817 [Photobacterium sp. SKA34] Length = 154 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D TLN EYR D+PTNVLSFP F + G +LGD+++ +++E E Sbjct: 38 AEVTIRLVDEKESHTLNLEYRDKDRPTNVLSFP--FEAPPGVELELLGDLIICRQVVEKE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K + H H+++HG LHLLGYDH++D++A ME LE I++++G DPY Sbjct: 96 ALEQNKPLKAHWAHMVVHGSLHLLGYDHIEDEEAEEMENLETEIMQNMGFVDPY 149 >gi|295695438|ref|YP_003588676.1| protein of unknown function UPF0054 [Bacillus tusciae DSM 2912] gi|295411040|gb|ADG05532.1| protein of unknown function UPF0054 [Bacillus tusciae DSM 2912] Length = 162 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEI 110 E+S+V D RI LN +YRG+D+PT+VLSF + + +LGDIV++ E Sbjct: 40 AEVSVVLVDDERIHELNRDYRGVDRPTDVLSFAMREGEGEPVQTEEGRELLGDIVISVET 99 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E +AN G L L +HGFLHLLGYDH + VM G + +L LG+ Sbjct: 100 AERQANQYGHSLRRELAFLAVHGFLHLLGYDHQSPEQERVMFGKQEEVLSALGL 153 >gi|146308796|ref|YP_001189261.1| putative metalloprotease [Pseudomonas mendocina ymp] gi|166990901|sp|A4XYW3|RRMF_PSEMY RecName: Full=Probable rRNA maturation factor gi|145576997|gb|ABP86529.1| protein of unknown function UPF0054 [Pseudomonas mendocina ymp] Length = 151 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 86/162 (53%), Gaps = 16/162 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A + DE LR CE+ + ++ EL++ D L Sbjct: 4 LDLQLASDGQH-PDEAQLRRWCELALRQRTAD------------SELTIRLVDEEEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 N +R D TNVLSFP DG + +LGD+V+ ++E EA GK E H HL Sbjct: 51 NRTWRHKDYATNVLSFPAEI--PDGILDIPLLGDLVICVPVLEREAAEQGKTLEAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+++ +A ME LER +L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIEEDEALEMEELERQLLAELGHPDPYAGD 150 >gi|227485439|ref|ZP_03915755.1| metal-dependent hydrolase [Anaerococcus lactolyticus ATCC 51172] gi|227236569|gb|EEI86584.1| metal-dependent hydrolase [Anaerococcus lactolyticus ATCC 51172] Length = 152 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 2/112 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--GCSSLMLGDIVLAYEIIE 112 E+SL D I LN EYR +D+PT+VLSFP D G S +LGDIV+ ++ E Sbjct: 39 AEVSLSIVDMETIHRLNKEYREVDRPTDVLSFPMDEEGYDNEGNSIFLLGDIVICLDVAE 98 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G E +++LI H LHLLGYDH+++ D M E+ ++++LG+ Sbjct: 99 NQAKDFGHSLEREMMYLICHSTLHLLGYDHIEEDDKLEMRSREKEVMKNLGV 150 >gi|77461173|ref|YP_350680.1| putative metalloprotease [Pseudomonas fluorescens Pf0-1] gi|123603159|sp|Q3K6B5|RRMF_PSEPF RecName: Full=Probable rRNA maturation factor gi|77385176|gb|ABA76689.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 164 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E A E R CE+ + ++ E+++ D L Sbjct: 4 LDLQIATE-APAPTEAEFRQWCELALRQRTAD------------SEMTIRLVDEDEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R D TNVLSFP A + +LGD+V+ ++E EA GKE + H HL+ Sbjct: 51 NHTWRHKDYATNVLSFP-AEVPDEFLDIPLLGDLVICVAVVEREATEQGKELKAHWAHLV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER +L +LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEALERELLAELGYPDPYADD 150 >gi|94498013|ref|ZP_01304577.1| predicted metal-dependent hydrolase [Sphingomonas sp. SKA58] gi|94422596|gb|EAT07633.1| predicted metal-dependent hydrolase [Sphingomonas sp. SKA58] Length = 169 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/147 (39%), Positives = 80/147 (54%), Gaps = 8/147 (5%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP- 87 ++L + A+++ G+ E+++ T + LN YR DKPTNVLSFP Sbjct: 18 QSLADRAVTAAIAHSPYAGFAAAPTHYEIAVKLTSDEEVHGLNRAYRDKDKPTNVLSFPM 77 Query: 88 ------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 A A++D ++LGDIVLA + EA G +H HLI+HG HLLGYD Sbjct: 78 VQDDLLQATANTDD-GEVLLGDIVLAEGVCAAEAADKGISILDHATHLIVHGTFHLLGYD 136 Query: 142 HVDDKDACVMEGLERSILEDLGINDPY 168 H+DD +A ME LE + L LG+ DPY Sbjct: 137 HMDDAEAEAMEALEIAALASLGLADPY 163 >gi|83746118|ref|ZP_00943173.1| Hypothetical Metal-Binding Protein [Ralstonia solanacearum UW551] gi|207742382|ref|YP_002258774.1| hypothetical protein RSIPO_00569 [Ralstonia solanacearum IPO1609] gi|83727301|gb|EAP74424.1| Hypothetical Metal-Binding Protein [Ralstonia solanacearum UW551] gi|206593772|emb|CAQ60699.1| hypothetical protein RSIPO_00569 [Ralstonia solanacearum IPO1609] Length = 254 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 63/114 (55%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +L++ F D TLN YRG D TNVL+F A D S+ D+VL ++E E Sbjct: 142 AQLNVRFVDEEEGRTLNRTYRGKDYATNVLTFSYAETEHDPVSA----DVVLCCPVVEKE 197 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K H HLI+HG LH GYDH + +A MEG+E ++L +LG DPY Sbjct: 198 AKDQDKPLRAHYAHLIVHGALHAQGYDHENPAEAKEMEGIETAVLAELGFPDPY 251 >gi|207727982|ref|YP_002256376.1| hypothetical protein RSMK04405 [Ralstonia solanacearum MolK2] gi|206591225|emb|CAQ56837.1| hypothetical protein RSMK04405 [Ralstonia solanacearum MolK2] Length = 254 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 63/114 (55%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +L++ F D TLN YRG D TNVL+F A D S+ D+VL ++E E Sbjct: 142 AQLNVRFVDEEEGRTLNRTYRGKDYATNVLTFSYAETEHDPVSA----DVVLCCPVVEKE 197 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K H HLI+HG LH GYDH + +A MEG+E ++L +LG DPY Sbjct: 198 AKDQDKPLRAHYAHLIVHGALHAQGYDHENPAEAKEMEGIETAVLAELGFPDPY 251 >gi|30250260|ref|NP_842330.1| hypothetical protein NE2333 [Nitrosomonas europaea ATCC 19718] gi|46577433|sp|Q82SI9|RRMF_NITEU RecName: Full=Probable rRNA maturation factor gi|30181055|emb|CAD86245.1| Uncharacterized protein family UPF0054 [Nitrosomonas europaea ATCC 19718] Length = 164 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/134 (41%), Positives = 69/134 (51%), Gaps = 13/134 (9%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 +F K V +SK E+ + D E LN ++RG TNVL+F D Sbjct: 40 LFRKWVKAALSKP-------AEVVIRIVDRQEGEILNRDFRGKSSATNVLTF----VYDD 88 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 +LGDIVL +I EA GK+ H HL IHG LHL GYDH+ D+DA VME L Sbjct: 89 DVP--LLGDIVLCAPVICNEAQQQGKDLTAHYAHLTIHGILHLQGYDHIRDEDAVVMESL 146 Query: 155 ERSILEDLGINDPY 168 E I+ LG DPY Sbjct: 147 ETEIITRLGYPDPY 160 >gi|300692458|ref|YP_003753453.1| metalloprotease [Ralstonia solanacearum PSI07] gi|299079518|emb|CBJ52196.1| Putative metalloprotease [Ralstonia solanacearum PSI07] Length = 255 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 69/146 (47%), Gaps = 7/146 (4%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 GDE+ K + I+ F +L++ F TLN YR D TN Sbjct: 114 GDELKAAARKACPKQKDIEAWIAPALFAD---AQLNVRFVGEEEGRTLNRTYRDKDYATN 170 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 VL+F + D S+ DIVL ++E EA GK H HLI+HG LH GYDH Sbjct: 171 VLTFSYSETEDDPVSA----DIVLCCPVVEKEAKDQGKPLRAHYAHLIVHGALHAQGYDH 226 Query: 143 VDDKDACVMEGLERSILEDLGINDPY 168 D +A MEGLE +L LG DPY Sbjct: 227 EDPAEAKEMEGLETEVLAGLGFPDPY 252 >gi|294670470|ref|ZP_06735350.1| hypothetical protein NEIELOOT_02187 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307749|gb|EFE48992.1| hypothetical protein NEIELOOT_02187 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 172 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 67/124 (54%), Gaps = 11/124 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLA 107 ++SL+ D N +YRG D TNVLSF A A SDG + GD+V+ Sbjct: 51 ADISLLLLDEEPARACNRDYRGKDYATNVLSFALDEGETMYAPALSDG----LHGDLVIC 106 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 +++ EA GK E H HL IHG LHL+GYDH++D +A ME LE +L L DP Sbjct: 107 PQVVFKEAAEQGKTPEQHFAHLTIHGVLHLMGYDHIEDTEAEEMEALETRLLNQLAYPDP 166 Query: 168 YEVD 171 Y D Sbjct: 167 YSQD 170 >gi|238758021|ref|ZP_04619202.1| metalloprotease [Yersinia aldovae ATCC 35236] gi|238703775|gb|EEP96311.1| metalloprotease [Yersinia aldovae ATCC 35236] Length = 112 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/99 (45%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DK TNVLSFP F + +LGD+++ +++E EA K H H+ Sbjct: 9 LNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQEAIEQEKALLAHWAHM 66 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 67 VVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 105 >gi|219670284|ref|YP_002460719.1| hypothetical protein Dhaf_4278 [Desulfitobacterium hafniense DCB-2] gi|254803892|sp|B8FUL3|RRMF_DESHD RecName: Full=Probable rRNA maturation factor gi|219540544|gb|ACL22283.1| protein of unknown function UPF0054 [Desulfitobacterium hafniense DCB-2] Length = 157 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-----MLGDIVLAYE 109 E+SL D RI LN +YRG+D+PT+VLSF SD L +LGDI+++ E Sbjct: 41 AEVSLTLVDDARIHELNRDYRGVDRPTDVLSFALQEERSDEPDILDYEDHLLGDIIISVE 100 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE LV+L +HG LHLLGYDH++++D M E +++ +G+ Sbjct: 101 RARAQAIDYGHSFERELVYLAVHGTLHLLGYDHMEEEDKEEMRRQEEAVMSQIGL 155 >gi|217969296|ref|YP_002354530.1| unkown domain/ metalloprotease fusion protein [Thauera sp. MZ1T] gi|217506623|gb|ACK53634.1| protein of unknown function UPF0054 [Thauera sp. MZ1T] Length = 274 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 10/108 (9%) Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--------MLGDIVLAYEIIEIEANVLGK 120 LN +YRG D TNVL+F A+A + L + GD+VL ++ EA GK Sbjct: 165 ALNRDYRGKDYATNVLTF--AYAEGEDLPGLPAAAADVPLAGDLVLCVPVVVREAAAQGK 222 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E H HL++HG LHL GYDH ++ +A ME LE +IL +LG DPY Sbjct: 223 TLEAHFAHLVVHGMLHLQGYDHENETEAAEMEALETAILRELGYADPY 270 >gi|307252587|ref|ZP_07534481.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859909|gb|EFM91928.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 159 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/114 (46%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E Sbjct: 40 TEMTIRIVDEAESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKE 97 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+H HL IHG LHLLGYDH++D++A MEGLE I++ LG DPY Sbjct: 98 VEEQQISLESHWAHLAIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPY 151 >gi|292493859|ref|YP_003529298.1| hypothetical protein Nhal_3899 [Nitrosococcus halophilus Nc4] gi|291582454|gb|ADE16911.1| protein of unknown function UPF0054 [Nitrosococcus halophilus Nc4] Length = 153 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 66/114 (57%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D + LN+ YR + TNVLSFP ++ +LGD+V+ ++ EA Sbjct: 38 EVTIRIADEAEVAELNWRYRYKEGATNVLSFPFELSAPLPFQISLLGDLVICAPVVAREA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 KE H HL++HG LHLLG+DH + +A ME +E +IL+ LG +PYE Sbjct: 98 LEHAKEERAHWAHLVVHGVLHLLGFDHQQEAEAQQMEAMEITILKSLGYPNPYE 151 >gi|330505000|ref|YP_004381869.1| putative metalloprotease [Pseudomonas mendocina NK-01] gi|328919286|gb|AEB60117.1| putative metalloprotease [Pseudomonas mendocina NK-01] Length = 159 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 16/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A + DE LR CE+ + ++ EL++ D L Sbjct: 4 LDLQLATDGQH-PDEAQLRRWCELALRQRTAD------------SELTIRLVDEAEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 N +R D TNVLSFP DG + +LGD+V+ ++E EA GK + H HL Sbjct: 51 NHTWRHKDYATNVLSFPAEI--PDGILDIPLLGDLVICVPVVEREAAEQGKALDAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +IHG LHLLGYDH+++ +A ME LER +L +LG DPY Sbjct: 109 VIHGCLHLLGYDHIEEDEALEMEELERQLLAELGHPDPY 147 >gi|94676735|ref|YP_588542.1| hypothetical protein BCI_0064 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|145572748|sp|Q1LU22|RRMF_BAUCH RecName: Full=Probable rRNA maturation factor gi|94219885|gb|ABF14044.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 155 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D LN YRG + TNVLSFP F + ++LGDI++ +++E EA Sbjct: 40 EVTIRLVDEAESYNLNKIYRGQNHSTNVLSFP--FKAPSPVKLVLLGDIIICRQVVEREA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E + H++IHG LHLLGYDH +++A ME LE I+ LG +PYE + Sbjct: 98 QEQNKILEAYWAHMVIHGSLHLLGYDHFIEQNAKKMEYLETKIMHKLGYLNPYETE 153 >gi|307822346|ref|ZP_07652578.1| protein of unknown function UPF0054 [Methylobacter tundripaludum SV96] gi|307736912|gb|EFO07757.1| protein of unknown function UPF0054 [Methylobacter tundripaludum SV96] Length = 153 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+ + D LN +YR PTN+LSFP +G +LGD+V+ ++E E Sbjct: 36 TEIVVRIVDEQESAELNEQYRHKSGPTNILSFPVDV--PEGIELDLLGDLVICAPVVEKE 93 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K +H H+I+HG LHLLGYDH+DD +A +ME E +IL L IN+PY Sbjct: 94 ALEQDKLLAHHWAHIIVHGVLHLLGYDHIDDDEAELMENKEIAILNKLHINNPY 147 >gi|89895855|ref|YP_519342.1| hypothetical protein DSY3109 [Desulfitobacterium hafniense Y51] gi|122481904|sp|Q24SU4|RRMF_DESHY RecName: Full=Probable rRNA maturation factor gi|89335303|dbj|BAE84898.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 157 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 5/115 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-----MLGDIVLAYE 109 E+SL D RI LN +YRG+D+PT+VLSF SD L +LGDI+++ E Sbjct: 41 AEVSLTLVDDARIHELNRDYRGVDRPTDVLSFALQEERSDEPDILDYEDHLLGDIIISVE 100 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE LV+L +HG LHLLGYDH+++ D M E +++ +G+ Sbjct: 101 RARAQAIDYGHSFERELVYLAVHGTLHLLGYDHMEEADKEKMRRQEEAVMSQIGL 155 >gi|294012045|ref|YP_003545505.1| putative metal-dependent hydrolase [Sphingobium japonicum UT26S] gi|292675375|dbj|BAI96893.1| putative metal-dependent hydrolase [Sphingobium japonicum UT26S] Length = 166 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/146 (39%), Positives = 78/146 (53%), Gaps = 10/146 (6%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--- 87 L + A+++ + E + E+++ T + LN YR DKPTNVLSFP Sbjct: 20 LAQRAVVAAITHSPYAAFAADEALYEVAVKLTTDEEVHQLNRAYRDKDKPTNVLSFPMVQ 79 Query: 88 -----TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 T + DG ++LGDIVLA + EA G +H HLI+HG HLLGYDH Sbjct: 80 SDLLETTANTDDG--EVLLGDIVLAEGVCAREAAEKGVSVADHATHLIVHGTFHLLGYDH 137 Query: 143 VDDKDACVMEGLERSILEDLGINDPY 168 ++D +A ME LE L LGI+DPY Sbjct: 138 MEDAEAEAMEALETQSLISLGISDPY 163 >gi|325276220|ref|ZP_08142019.1| metal-binding heat shock protein [Pseudomonas sp. TJI-51] gi|324098649|gb|EGB96696.1| metal-binding heat shock protein [Pseudomonas sp. TJI-51] Length = 157 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+Q A + A D+ R CE+ + ++ E+++ D L Sbjct: 4 LDIQRATDAAAPSDD-DFRRWCELALRQRSAD------------SEMTIRLVDEAEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D TNVLSFP A D +LGD+V+ ++E EA GK H HL+ Sbjct: 51 NHTYRHKDYATNVLSFP-ADVPDDLLDIPLLGDLVICVAVVEREAAEQGKALNAHWAHLV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A MEGLER +L +LG DPY D Sbjct: 110 IHGCLHLLGYDHIDDEEAEEMEGLERELLAELGHPDPYADD 150 >gi|302389485|ref|YP_003825306.1| protein of unknown function UPF0054 [Thermosediminibacter oceani DSM 16646] gi|302200113|gb|ADL07683.1| protein of unknown function UPF0054 [Thermosediminibacter oceani DSM 16646] Length = 162 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 6/111 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAY 108 VE+S+VF D+ I LN YRG D PT+VLSF S+D MLGDIV++ Sbjct: 40 VEVSVVFVDNDYIRELNRSYRGKDMPTDVLSFSMRETSADEAFDGNEEVERMLGDIVISL 99 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E +A+ G FE + +L++HG LHLLGYDH +++D +M E +L Sbjct: 100 EKAREQADAFGHSFEREVGYLVVHGVLHLLGYDHEEERDKKIMREKEEEVL 150 >gi|254435169|ref|ZP_05048676.1| conserved hypothetical protein TIGR00043 [Nitrosococcus oceani AFC27] gi|207088280|gb|EDZ65552.1| conserved hypothetical protein TIGR00043 [Nitrosococcus oceani AFC27] Length = 143 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 64/114 (56%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ LN+ YR + TN+LSFP S +LGD+V+ ++ EA Sbjct: 28 EITIRVASESEAAQLNWRYRHKEGATNILSFPFEVPSCVSLDVPLLGDLVICAPVVAREA 87 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K+ + H HL++HG LHLLG+DH + +A ME LE +ILE LG DPYE Sbjct: 88 LEQTKKEQAHWAHLVVHGVLHLLGFDHQQEVEAQQMESLEVTILESLGYPDPYE 141 >gi|77163774|ref|YP_342299.1| hypothetical protein Noc_0239 [Nitrosococcus oceani ATCC 19707] gi|123595149|sp|Q3JEH7|RRMF_NITOC RecName: Full=Probable rRNA maturation factor gi|76882088|gb|ABA56769.1| Protein of unknown function UPF0054 [Nitrosococcus oceani ATCC 19707] Length = 153 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 64/114 (56%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ LN+ YR + TN+LSFP S +LGD+V+ ++ EA Sbjct: 38 EITIRVASESEAAQLNWRYRHKEGATNILSFPFEVPSCVSLDVPLLGDLVICAPVVAREA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K+ + H HL++HG LHLLG+DH + +A ME LE +ILE LG DPYE Sbjct: 98 LEQTKKEQAHWAHLVVHGVLHLLGFDHQQEVEAQQMESLEVTILESLGYPDPYE 151 >gi|114331764|ref|YP_747986.1| hypothetical protein Neut_1787 [Nitrosomonas eutropha C91] gi|122313486|sp|Q0AF61|RRMF_NITEC RecName: Full=Probable rRNA maturation factor gi|114308778|gb|ABI60021.1| protein of unknown function UPF0054 [Nitrosomonas eutropha C91] Length = 141 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 71/141 (50%), Gaps = 12/141 (8%) Query: 34 VVFAKAVSNLISKGYFVK------ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 V FA +N+ + F K E+ + E LN ++RG D TNVL+F Sbjct: 3 VQFAADKTNIPGRQLFRKWVGAALNKPAEIVIRIVGMQEGEVLNRKFRGKDSATNVLTF- 61 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 SD +LGDIVL +I EA K+ H HLI+HG LHL GYDH+ D+D Sbjct: 62 ---VYSDDVP--LLGDIVLCAPVISREAEQQNKDLVAHYAHLIVHGVLHLQGYDHISDED 116 Query: 148 ACVMEGLERSILEDLGINDPY 168 A VME LE I+ L DPY Sbjct: 117 AVVMESLETKIITRLNYPDPY 137 >gi|262277763|ref|ZP_06055556.1| conserved hypothetical protein [alpha proteobacterium HIMB114] gi|262224866|gb|EEY75325.1| conserved hypothetical protein [alpha proteobacterium HIMB114] Length = 150 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 93/153 (60%), Gaps = 13/153 (8%) Query: 13 LQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I+ ++ +W D ++ + + K++ +S+ F+ +NI E+S++ T++ ++ +LN Sbjct: 4 IHISCDSKIWLKDSTNVEKKIKNILKKSI---MSEKKFLSKNI-EISVLLTNTKKMTSLN 59 Query: 72 FEYRGIDKPTNVLSFPTA----FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 ++YR K T++LSFP+ F ++ LGD+ L++ I+ + G EFE +L Sbjct: 60 YKYRNKKKDTDILSFPSEKPNFFKKKLKQKNIYLGDLALSFNYIKKQ----GIEFEEYLK 115 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +++HGFLHL+GYDH ++K+ ME ++ IL+ Sbjct: 116 KMLVHGFLHLIGYDHDNEKNFLKMEKIQNKILK 148 >gi|134296888|ref|YP_001120623.1| unkown domain/putative metalloprotease fusion protein [Burkholderia vietnamiensis G4] gi|134140045|gb|ABO55788.1| protein of unknown function UPF0054 [Burkholderia vietnamiensis G4] Length = 258 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+ +++V+ +GDEI + K ++ I F +L++ F TL Sbjct: 109 LEFELSVQ---YGDEITAELRKTLPKRKLIAEWIEPALFAS---AQLTVRFVGEEEGRTL 162 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D PTNVL+F A ++GD+VL ++E EA K H HL+ Sbjct: 163 NAGYRHKDYPTNVLTF----AYDPAPDGTVIGDLVLCCPVVEKEAREQNKPLAAHYAHLL 218 Query: 131 IHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 +HG LH GYDH D DA ME LE IL LG +PY+ Sbjct: 219 VHGALHAQGYDHETSDADAAEMEALEIDILAKLGFPNPYQ 258 >gi|209694557|ref|YP_002262485.1| putative metalloprotease [Aliivibrio salmonicida LFI1238] gi|226703999|sp|B6EIN6|RRMF_ALISL RecName: Full=Probable rRNA maturation factor gi|208008508|emb|CAQ78679.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 153 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 13/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA EN E L + E F ++ ++ + + EL++ D Sbjct: 4 ELDLQIACEN-----EKDLPS--EKDFMSWLNAVLPQF----QPQAELTIRIVDEKESHE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG+DKPTNVLSFP F + +LGD+++ +++E EA K H H+ Sbjct: 53 LNHQYRGMDKPTNVLSFP--FEAPPEVEIDLLGDLIICRQVVEKEAVEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D++A ME LE +++++G DPY Sbjct: 111 VVHGSLHLLGYDHIEDEEAEEMESLETELMQEMGFEDPY 149 >gi|153873752|ref|ZP_02002229.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152069781|gb|EDN67770.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 181 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VEL++ D + LN ++R PTN+LSFP F S +LGD+V+ ++ E Sbjct: 64 VELTIRIVDDEEAKQLNEKWRQRPNPTNILSFP--FESPLDLEIPLLGDLVICASVVARE 121 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 A K + H HL+IHG LHLLGYDH++ ME E IL DLG ++PY++ Sbjct: 122 ATEQYKSLDAHWAHLVIHGTLHLLGYDHIEIAQEQFMESTEICILYDLGYSNPYQL 177 >gi|307293144|ref|ZP_07572990.1| protein of unknown function UPF0054 [Sphingobium chlorophenolicum L-1] gi|306881210|gb|EFN12426.1| protein of unknown function UPF0054 [Sphingobium chlorophenolicum L-1] Length = 166 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/145 (40%), Positives = 78/145 (53%), Gaps = 8/145 (5%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-- 88 L + A+ + + E + E+++ T + LN YR DKPTNVLSFP Sbjct: 20 LAQRAVVAAIMHSPYAAFAADEALYEVAVKLTSDEEVHQLNRAYRDKDKPTNVLSFPMVQ 79 Query: 89 -----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 A A++D ++LGDIVLA + EA G +H HLI+HG HLLGYDH+ Sbjct: 80 ADLLEATANTDD-GEVILGDIVLAEGVCAAEAAEKGISVADHATHLIVHGTFHLLGYDHM 138 Query: 144 DDKDACVMEGLERSILEDLGINDPY 168 +D +A ME LE L LGI+DPY Sbjct: 139 EDAEAEAMEALETQSLVSLGISDPY 163 >gi|170741365|ref|YP_001770020.1| hypothetical protein M446_3180 [Methylobacterium sp. 4-46] gi|168195639|gb|ACA17586.1| protein of unknown function UPF0054 [Methylobacterium sp. 4-46] Length = 159 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/115 (46%), Positives = 72/115 (62%), Gaps = 3/115 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S++ TD ++ LN +RG DKPTNVLSFP A G + LGD+VLAY+ + E Sbjct: 42 VEVSVLLTDDEAVQELNRTWRGKDKPTNVLSFPAGHAH--GGAPRPLGDVVLAYDTMLRE 99 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 + K +HL HL++HG LHLLG DH + +A ME LE + L LG+ DPY Sbjct: 100 SGEQSKPLGHHLAHLLVHGTLHLLGQDHETGEAEAEAMEALEAAALARLGVPDPY 154 >gi|225848714|ref|YP_002728877.1| hypothetical protein SULAZ_0899 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644244|gb|ACN99294.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 150 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 6/141 (4%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 L E++ + + + KAV ++ ENI E+S+ TD+ I+++N E+R DKP Sbjct: 6 LINKEVYDKEITKEFVKKAVEQILKNLQL--ENI-EISITLTDNDTIKSINKEWRNKDKP 62 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T+VLSFP F + G +LGD++++ + +A +G ++ +V L+ HG LHLLGY Sbjct: 63 TDVLSFP--FGDTIGYKYRVLGDVIISLPYAKKQAQEIGFSYKQEIVRLLTHGILHLLGY 120 Query: 141 DH-VDDKDACVMEGLERSILE 160 DH +++DA VM L+ I E Sbjct: 121 DHETNEEDAKVMFNLQDKIFE 141 >gi|134300321|ref|YP_001113817.1| putative metalloprotease [Desulfotomaculum reducens MI-1] gi|189039698|sp|A4J7D9|RRMF_DESRM RecName: Full=Probable rRNA maturation factor gi|134053021|gb|ABO50992.1| protein of unknown function UPF0054 [Desulfotomaculum reducens MI-1] Length = 153 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/127 (41%), Positives = 70/127 (55%), Gaps = 6/127 (4%) Query: 42 NLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-- 99 +L S+GY E+ L+F D + I +LN EYRGIDK T+VLSF Sbjct: 29 SLESEGYSPD---AEVGLIFVDDNYIRSLNAEYRGIDKATDVLSFALNEGEEMPEEEEAE 85 Query: 100 -MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +LGDIV++ + +A G F + +L HG LHLLGYDH+ ++D VM E I Sbjct: 86 DLLGDIVISLPTAQRQAAEYGHSFNREVAYLTAHGSLHLLGYDHMTEEDRQVMRQKEEGI 145 Query: 159 LEDLGIN 165 LE LGIN Sbjct: 146 LERLGIN 152 >gi|53804491|ref|YP_113914.1| hypothetical protein MCA1457 [Methylococcus capsulatus str. Bath] gi|59799087|sp|Q608N3|RRMF_METCA RecName: Full=Probable rRNA maturation factor gi|53758252|gb|AAU92543.1| conserved hypothetical protein TIGR00043 [Methylococcus capsulatus str. Bath] Length = 150 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 2/114 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+ + D LN YRG PTNVLSFP F +G + +LGD+V+ ++E E Sbjct: 33 AEVVIRIVDREESAALNSTYRGKTGPTNVLSFP--FVVPEGVPNDLLGDLVICAPVVERE 90 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK E H H+++HG LHL GYDH+++ +A +ME E +IL LG+ +PY Sbjct: 91 AAEQGKPVEAHWAHMVVHGMLHLQGYDHIEEAEAEIMENREIAILRGLGMENPY 144 >gi|269139974|ref|YP_003296675.1| hypothetical protein ETAE_2629 [Edwardsiella tarda EIB202] gi|267985635|gb|ACY85464.1| hypothetical protein ETAE_2629 [Edwardsiella tarda EIB202] gi|304559807|gb|ADM42471.1| heat shock protein [Edwardsiella tarda FL6-60] Length = 157 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG D+PTNVLSFP F + G +LGD+V+ +++E E Sbjct: 39 AEVTIRLVDEAESHELNLTYRGKDRPTNVLSFP--FEAPPGIELPLLGDMVICRQVVERE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 A +H H+++HG LHLLGYDH+ D++A ME LE I++ LG DPY + Sbjct: 97 AQEQNIAPLSHWAHMVVHGSLHLLGYDHISDEEAEEMESLEADIMQALGYPDPYAAE 153 >gi|289209297|ref|YP_003461363.1| hypothetical protein TK90_2137 [Thioalkalivibrio sp. K90mix] gi|288944928|gb|ADC72627.1| protein of unknown function UPF0054 [Thioalkalivibrio sp. K90mix] Length = 171 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 1/127 (0%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGCSSLMLGD 103 ++ + +++L D+ LN +RG D TNVLSFP LGD Sbjct: 27 ARAAWRGTGRADVALRVVDADEGLELNRGFRGRDYATNVLSFPAPDLPPMAAGEPRYLGD 86 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 IVL ++ EA GK H H+++HG LHL G DH + +A ME +ERSIL LG Sbjct: 87 IVLCAPVLAREAAEQGKSLRAHYSHMVVHGLLHLQGMDHQESGEAEAMEAVERSILAGLG 146 Query: 164 INDPYEV 170 DPY+ Sbjct: 147 YPDPYQT 153 >gi|6523485|emb|CAB62265.1| YbeY protein [Salmonella typhimurium] Length = 123 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 71/131 (54%), Gaps = 13/131 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A EN H E F + + +I + F +E V + LV D L Sbjct: 6 LDLQLACEN-------HAGLPDEAQFQRWLDGVIPQ--FQEEAEVTIRLV--DEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPAGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMV 112 Query: 131 IHGFLHLLGYD 141 +HG LHLLGYD Sbjct: 113 VHGSLHLLGYD 123 >gi|298369902|ref|ZP_06981218.1| metalloprotease [Neisseria sp. oral taxon 014 str. F0314] gi|298281362|gb|EFI22851.1| metalloprotease [Neisseria sp. oral taxon 014 str. F0314] Length = 171 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 14/125 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--------PTAFASSDGCSSLMLGDIVL 106 ++SL+ D N +YRG D TNVLSF P F SDG + GD+++ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQF--SDG----LCGDLII 104 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 +++ EA GK E H HL +HG LHL+GYDH++D DA ME LE +++ L + Sbjct: 105 CPQVVFKEAAEQGKTAEQHFAHLTLHGTLHLMGYDHIEDHDAEEMEALEIRLMQALNYPN 164 Query: 167 PYEVD 171 PY D Sbjct: 165 PYRED 169 >gi|329911493|ref|ZP_08275544.1| A heat shock protein involved in translation, putative protease [Oxalobacteraceae bacterium IMCC9480] gi|327545865|gb|EGF30976.1| A heat shock protein involved in translation, putative protease [Oxalobacteraceae bacterium IMCC9480] Length = 154 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 3/139 (2%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L +V V + F EL++ F DS TLN +YR D TNVL+F Sbjct: 18 LATLVTRPLVRRWVQAALFAP---AELTVRFVDSDEGRTLNRDYRSKDYATNVLTFAYND 74 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D + D++L ++++ EA GK H HL++HG +H GYDH D+ +A Sbjct: 75 GEEDPNDDITRADLILCTDVLQAEALAQGKPLLAHAAHLVVHGVMHAQGYDHEDEVEADE 134 Query: 151 MEGLERSILEDLGINDPYE 169 ME LE +L LG +PY+ Sbjct: 135 MEALEIEVLAKLGFGNPYQ 153 >gi|224827049|ref|ZP_03700146.1| protein of unknown function UPF0054 [Lutiella nitroferrum 2002] gi|224600715|gb|EEG06901.1| protein of unknown function UPF0054 [Lutiella nitroferrum 2002] Length = 168 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEI 113 ++SL+ + LN +YRG D TNVLSF A + + L GD+VL ++ Sbjct: 51 AQISLLLVEGEEGRALNRDYRGKDYATNVLSF--ALNEGETLPGMPLFGDLVLCVPVVAR 108 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA H HL +HG LHL GYDH DD +A VME LE +IL LG DPY + Sbjct: 109 EAAEQDTPLAAHYAHLTVHGMLHLQGYDHEDDDEAEVMEALETAILAKLGYPDPYAAE 166 >gi|172061653|ref|YP_001809305.1| unkown domain/putative metalloprotease fusion protein [Burkholderia ambifaria MC40-6] gi|171994170|gb|ACB65089.1| protein of unknown function UPF0054 [Burkholderia ambifaria MC40-6] Length = 261 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 18/166 (10%) Query: 9 PR-LDLQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 PR L+ ++V+ +GDEI +R C K ++ I F + +L++ F Sbjct: 109 PRELEFDLSVQ---YGDEITGDVRKACPK--RKLIAEWIEPALF---SSAQLTVRFVGEE 160 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFAS-SDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 TLN YR D PTNVL+F A+ DG ++GD+VL ++E EA GK Sbjct: 161 EGRTLNDGYRHKDYPTNVLTF--AYDPLPDGT---VIGDLVLCCPVVEKEAQEQGKPLAA 215 Query: 125 HLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 H HL++HG LH GYDH ++DA ME LE +IL LG +PY+ Sbjct: 216 HYAHLLVHGALHAQGYDHETSEEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|294637488|ref|ZP_06715774.1| putative metalloprotease [Edwardsiella tarda ATCC 23685] gi|291089320|gb|EFE21881.1| putative metalloprotease [Edwardsiella tarda ATCC 23685] Length = 157 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 88/160 (55%), Gaps = 17/160 (10%) Query: 11 LDLQIAVENA--LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA ++A L + LR L E V + F E V + LV D Sbjct: 6 LDLQIACDDAPGLPAEGDFLRWL-EAVLPR----------FRDEAEVTIRLV--DEAESH 52 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG D+PTNVLSFP F + +LGD+V+ +++E+EA +H H Sbjct: 53 ELNLTYRGKDRPTNVLSFP--FEAPPEIELPLLGDMVICRQVVELEAQQQNITPLSHWAH 110 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHLLGYDH+ D++A ME LE I++ LG DPY Sbjct: 111 MVVHGALHLLGYDHISDEEAEEMESLEADIMQALGYPDPY 150 >gi|220920279|ref|YP_002495580.1| hypothetical protein Mnod_0233 [Methylobacterium nodulans ORS 2060] gi|219944885|gb|ACL55277.1| protein of unknown function UPF0054 [Methylobacterium nodulans ORS 2060] Length = 159 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S+V TD ++ LN +RG DKPTNVLSFP G LGD+VLAY+ + E Sbjct: 42 VEVSVVLTDDAAVQELNRTWRGKDKPTNVLSFPAGHPH--GGDLRPLGDVVLAYDTMLRE 99 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI-LEDLGINDPY 168 + K +HL HL++HG LHLLG DH + + L LG+ DPY Sbjct: 100 SGEQSKPLGHHLAHLLVHGTLHLLGQDHETGEAEAEAMEALEVVALRRLGVPDPY 154 >gi|289806764|ref|ZP_06537393.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 98 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 2/88 (2%) Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 TNVLSFP F + G +LGD+++ +++E EA K E H H+++HG LHLLGY Sbjct: 6 TNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHGSLHLLGY 63 Query: 141 DHVDDKDACVMEGLERSILEDLGINDPY 168 DH+DD +A ME LE I+ +G DPY Sbjct: 64 DHIDDDEAEEMESLETEIMLAMGYEDPY 91 >gi|284009229|emb|CBA76319.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 164 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 2/114 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D + LN YRG D PTNVLSFP F + D +LGD+V+ +++E EA Sbjct: 49 EITIRIVDIAESQYLNLTYRGKDNPTNVLSFP--FEALDNIPLPLLGDLVICRQVVEKEA 106 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K + H H++IHG LHLLGYDH +D +A ME +E I++ LG DPY+ Sbjct: 107 IEQHKTLDAHWAHMVIHGCLHLLGYDHQNDFEAEEMETIETEIMQKLGYPDPYQ 160 >gi|238920800|ref|YP_002934315.1| hypothetical protein NT01EI_2926 [Edwardsiella ictaluri 93-146] gi|259646922|sp|C5BGB7|RRMF_EDWI9 RecName: Full=Probable rRNA maturation factor gi|238870369|gb|ACR70080.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 157 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG D+PTNVLSFP F + G +LGD+V+ +++E E Sbjct: 39 AEVTIRLVDEAESHELNLTYRGKDRPTNVLSFP--FEAPPGIELPLLGDMVICRQVVERE 96 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 A +H H+++HG LHLLGYDH+ D++A ME LE I++ LG DPY + Sbjct: 97 AQEQNISQLSHWAHMVVHGSLHLLGYDHISDEEAEEMESLEAEIMQVLGYPDPYAAE 153 >gi|90416862|ref|ZP_01224791.1| hypothetical protein GB2207_06363 [marine gamma proteobacterium HTCC2207] gi|90331209|gb|EAS46453.1| hypothetical protein GB2207_06363 [marine gamma proteobacterium HTCC2207] Length = 164 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 2/115 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+ D N YRG TNVLSFP + + +LGD+V+ ++ EA Sbjct: 38 ELSIRIVDEQESADFNQRYRGKSGATNVLSFPFDAVTPEPLP--ILGDLVICAPVVIREA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 + K + H H++IHG LHLLGYDH++D+DA MEGLE I+ L PY + Sbjct: 96 SDQQKTVDAHWAHIVIHGVLHLLGYDHIEDQDAEQMEGLETEIMLKLDFPAPYRI 150 >gi|212696004|ref|ZP_03304132.1| hypothetical protein ANHYDRO_00540 [Anaerococcus hydrogenalis DSM 7454] gi|212676991|gb|EEB36598.1| hypothetical protein ANHYDRO_00540 [Anaerococcus hydrogenalis DSM 7454] Length = 154 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 72/121 (59%), Gaps = 6/121 (4%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGCS-----SLMLGD 103 V E E+SL F D +I LN ++R D+ T+VLSFP F + D + LMLGD Sbjct: 32 VDEKKCEISLSFVDEIKIRDLNKDFRQTDRVTDVLSFPIEDFFNEDRKTLLEKPYLMLGD 91 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +V+ ++ +A LG FE +++L H LHLLGYDH+++ D +M E+ ++++LG Sbjct: 92 VVICTDVARKQAKELGHSFEREIIYLTCHSILHLLGYDHMEEDDKKIMRLKEKQVMKNLG 151 Query: 164 I 164 + Sbjct: 152 V 152 >gi|104783749|ref|YP_610247.1| putative metalloprotease [Pseudomonas entomophila L48] gi|122401726|sp|Q1I4H2|RRMF_PSEE4 RecName: Full=Probable rRNA maturation factor gi|95112736|emb|CAK17464.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 157 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 75/143 (52%), Gaps = 13/143 (9%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R CE+ + ++ E+++ D LN YR D TNVLSFP Sbjct: 21 RRWCELALRQRTAD------------SEMTIRLVDEAEGRELNHTYRHKDYATNVLSFP- 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 A D +LGD+V+ ++E EA GK E H HL+IHG LHLLGYDH++D +A Sbjct: 68 ADVPDDLLDIPLLGDLVICVPVVEREAREQGKALEAHWAHLVIHGCLHLLGYDHIEDDEA 127 Query: 149 CVMEGLERSILEDLGINDPYEVD 171 ME LER +L +LG DPY D Sbjct: 128 EEMEALERELLAELGHPDPYADD 150 >gi|115352799|ref|YP_774638.1| unkown domain/putative metalloprotease fusion protein [Burkholderia ambifaria AMMD] gi|115282787|gb|ABI88304.1| protein of unknown function UPF0054 [Burkholderia ambifaria AMMD] Length = 261 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 18/166 (10%) Query: 9 PR-LDLQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 PR L+ ++V+ +GDE+ +R C K ++ I F + +L++ F Sbjct: 109 PRELEFDLSVQ---YGDEVTGDVRKACPK--RKLIAEWIEPALF---SSAQLTVRFVGEE 160 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFAS-SDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 TLN YR D PTNVL+F A+ DG ++GD+VL ++E EA GK Sbjct: 161 EGRTLNDGYRHKDYPTNVLTF--AYDPLPDGT---VIGDLVLCCPVVEKEAQEQGKPLAA 215 Query: 125 HLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 H HL++HG LH GYDH ++DA ME LE +IL LG +PY+ Sbjct: 216 HYAHLLVHGALHAQGYDHETSEEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|50086161|ref|YP_047671.1| hypothetical protein ACIAD3160 [Acinetobacter sp. ADP1] gi|59799110|sp|Q6F7W6|RRMF_ACIAD RecName: Full=Probable rRNA maturation factor gi|49532137|emb|CAG69849.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 159 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 E+ + D + LN EYRG DK TNVLSFP+ + LGD+V+ ++ Sbjct: 41 EIGIACVDHEQSHRLNLEYRGKDKSTNVLSFPSDIPEEVLPLLDARPLGDLVICIPVVLD 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 EA K + H +H+++HG LHLLGYDH D+DA ME LE IL LG+ +PY+ Sbjct: 101 EAIEQHKTAQAHFMHMLVHGTLHLLGYDHETSDEDAEEMEALEIEILAKLGLENPYQ 157 >gi|26991468|ref|NP_746893.1| putative metalloprotease [Pseudomonas putida KT2440] gi|37999614|sp|Q88DN6|RRMF_PSEPK RecName: Full=Probable rRNA maturation factor gi|24986545|gb|AAN70357.1|AE016677_8 conserved hypothetical protein TIGR00043 [Pseudomonas putida KT2440] Length = 157 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+Q A + A D LR CE+ + ++ E+++ D L Sbjct: 4 LDIQRATDAATPEDAA-LRRWCELALRQRSAD------------SEMTIRLVDEAEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D TNVLSFP A D +LGD+V+ ++E EA GK E H HL+ Sbjct: 51 NHTYRHKDYATNVLSFP-ADVPDDLLDIPLLGDLVICVAVVEREAAEQGKSLEAHWAHLV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH++D++A ME LER +L +LG DPY D Sbjct: 110 IHGCLHLLGYDHIEDEEAEEMESLERELLAELGHPDPYADD 150 >gi|226951970|ref|ZP_03822434.1| metalloprotease [Acinetobacter sp. ATCC 27244] gi|226837308|gb|EEH69691.1| metalloprotease [Acinetobacter sp. ATCC 27244] Length = 161 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 69/121 (57%), Gaps = 7/121 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEII 111 E+ + D LN +YR DKPTNVLSFP+ + SL+ LGD+V+ ++ Sbjct: 41 EIGIACVDLAESHELNLQYREKDKPTNVLSFPSDI--PEKMLSLLDAEPLGDLVICMPVV 98 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYEV 170 EA K +H HL++HG LHLLGYDH + DA ME LE +IL+ L I +PY+ Sbjct: 99 LQEAKEQQKTPMDHFTHLLVHGILHLLGYDHETSESDAEEMEALEIAILKKLNIANPYQA 158 Query: 171 D 171 D Sbjct: 159 D 159 >gi|288555741|ref|YP_003427676.1| putative metalloprotease [Bacillus pseudofirmus OF4] gi|288546901|gb|ADC50784.1| putative metalloprotease [Bacillus pseudofirmus OF4] Length = 156 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM------LGDIVLAY 108 VELS+ F D RI+ +N EYRG D PT+V+SF D +M LGDI+++ Sbjct: 39 VELSITFVDEKRIQEINAEYRGKDIPTDVISFALNDEVEDEADMIMAGMPNALGDIIISV 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 I +A G FE L L++HGFLHLLGYDH+ ++D M + IL G+ Sbjct: 99 AHISRQAEEYGHSFERELGFLVVHGFLHLLGYDHMTEQDEKAMFSRQEEILSAYGLT 155 >gi|255659361|ref|ZP_05404770.1| putative metalloprotease [Mitsuokella multacida DSM 20544] gi|260848445|gb|EEX68452.1| putative metalloprotease [Mitsuokella multacida DSM 20544] Length = 154 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS----SDGCSSLMLGDIVLAYEII 111 E+S+ T++ I LN +YRGID+PT+VLSF + + G +LGD+V++ E Sbjct: 39 EVSITLTNNAYIHELNRQYRGIDRPTDVLSFALNESEEPEVTGGADINVLGDLVISVERA 98 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E +A G + + L +HG LHLLGYDH+++K+ ME +R ++E LGI Sbjct: 99 EEQAKDFGHSVKREMAFLTVHGMLHLLGYDHMEEKERLEMEQEQRFVMEKLGI 151 >gi|237798428|ref|ZP_04586889.1| metal-binding heat shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021280|gb|EGI01337.1| metal-binding heat shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 166 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E + E R CE+ G + EL++ D L Sbjct: 4 LDLQVASETSA-PSEAQFRLWCEM------------GLRQRSADSELTVRLVDETEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R D TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKDYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHLDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|332969607|gb|EGK08625.1| metal-dependent hydrolase [Kingella kingae ATCC 23330] Length = 170 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 8/119 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-----AFASSDGCSSLMLGDIVLAYE 109 ELSLV D N +YR D TNVLSF +F D +++ GD+++ + Sbjct: 52 AELSLVLLDEEAARQYNRDYRQKDYATNVLSFAHNEGEFSFVEQD---NILRGDLIICPQ 108 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++ EA GK +H HL+IHG LHL+G+DH+ D +A ME LE +L L I +PY Sbjct: 109 VVAKEAAEQGKSLHDHFAHLVIHGTLHLIGFDHIQDDEAEQMEQLETELLAQLRIANPY 167 >gi|226325256|ref|ZP_03800774.1| hypothetical protein COPCOM_03048 [Coprococcus comes ATCC 27758] gi|225206604|gb|EEG88958.1| hypothetical protein COPCOM_03048 [Coprococcus comes ATCC 27758] Length = 164 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 15/126 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---------AFASSDGCS------SL 99 ++ L+ T + I +N E+RGID+ T+VLSFP A+ +D S L Sbjct: 38 AQVELLLTMNEEIRQMNLEFRGIDRATDVLSFPMTEFPSPADYAYLDTDDSSFDPETGEL 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 MLG+IV++ E + +A G E LI H LHLLGYDH++D++ VME +R +L Sbjct: 98 MLGNIVISKERAKEQAEEYGHSVEREFAFLIAHSMLHLLGYDHMEDEERLVMEKKQREVL 157 Query: 160 EDLGIN 165 E LGI Sbjct: 158 EMLGIT 163 >gi|262374160|ref|ZP_06067437.1| metal-dependent hydrolase [Acinetobacter junii SH205] gi|262311171|gb|EEY92258.1| metal-dependent hydrolase [Acinetobacter junii SH205] Length = 161 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 E+ + D LN +YR DKPTNVLSFP+ + LGD+V+ ++ Sbjct: 41 EIGIACVDLAESHELNLQYREKDKPTNVLSFPSDIPEEMLSLLEAEPLGDLVICIPVVLQ 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYEVD 171 EA K +H HL++HG LHLLGYDH + +A ME LE IL+ LGI++PY+ D Sbjct: 101 EAAEQQKTPSDHFTHLLVHGILHLLGYDHETSEVEAEEMEALEIEILKKLGISNPYQAD 159 >gi|160872543|ref|ZP_02062675.1| conserved hypothetical protein [Rickettsiella grylli] gi|159121342|gb|EDP46680.1| conserved hypothetical protein [Rickettsiella grylli] Length = 157 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 80/171 (46%), Gaps = 18/171 (10%) Query: 1 MSVKKVNLPRLD--LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 M K+N R+ LQI V N+ L+ + N NIV + Sbjct: 1 MHKTKINEKRIKITLQIRVRNSFIPSRYFLKRWVHTALSGQTEN----------NIVNIR 50 Query: 59 LVFT-DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 LV +S ++ TL YR TN+LSFP F +S LGD+VL I EA Sbjct: 51 LVTQKESAKLNTL---YRHKKGATNILSFP--FEPPPQVTSPFLGDLVLCATHINQEAKQ 105 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K H HLIIHG LHL+GYDH +A ME LE +L++LG +PY Sbjct: 106 QQKTRLAHWAHLIIHGCLHLIGYDHAHRHEAVKMETLEIQLLKELGYENPY 156 >gi|145572775|sp|Q0BC19|RRMF_BURCM RecName: Full=Probable rRNA maturation factor Length = 175 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 16/165 (9%) Query: 9 PR-LDLQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 PR L+ ++V+ +GDE+ +R C K ++ I F + +L++ F Sbjct: 23 PRELEFDLSVQ---YGDEVTGDVRKACPK--RKLIAEWIEPALF---SSAQLTVRFVGEE 74 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YR D PTNVL+F A ++GD+VL ++E EA GK H Sbjct: 75 EGRTLNDGYRHKDYPTNVLTF----AYDPLPDGTVIGDLVLCCPVVEKEAQEQGKPLAAH 130 Query: 126 LVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH ++DA ME LE +IL LG +PY+ Sbjct: 131 YAHLLVHGALHAQGYDHETSEEDAAEMEALEVAILAKLGFPNPYQ 175 >gi|315925212|ref|ZP_07921426.1| metal dependent hydrolase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621446|gb|EFV01413.1| metal dependent hydrolase [Pseudoramibacter alactolyticus ATCC 23263] Length = 156 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 80/160 (50%), Gaps = 17/160 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVS----NLISKGYFVKENIVELSLVFTDSHRIE 68 L I EN DE+ L E ++AK + L S+ V + I+E+SL I Sbjct: 2 LTIQFENQ--TDEV----LSEALWAKMQTCIRKTLASENVLVDKLILEVSLTLVSPETIR 55 Query: 69 TLNFEYRGIDKPTNVLSFPT-----AFASSDGCSSL--MLGDIVLAYEIIEIEANVLGKE 121 LN YRGID+ T+VLSFP A+ S L +LGDIVL + G Sbjct: 56 MLNANYRGIDRVTDVLSFPMLVFPEGMAALTAPSDLPILLGDIVLNPRRAAEQGETYGTG 115 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 FE + +L +H LHLLGYDH+D D M E++I++D Sbjct: 116 FEREMCYLTVHSVLHLLGYDHMDPDDKQAMRAREKAIMDD 155 >gi|171464143|ref|YP_001798256.1| protein of unknown function UPF0054 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193681|gb|ACB44642.1| protein of unknown function UPF0054 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 157 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 5/112 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++L F ++ + LN +R D TNVL+FP A + +D + DI+ +++ EA Sbjct: 50 ITLRFVNTTEGKKLNLAFRQKDYATNVLTFPYALSKND-----LAADIIFCLPVLQKEAK 104 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K + HL HLI+HG LH GYDH KDA ME LE ILE LG +PY Sbjct: 105 EQDKLLKAHLAHLIVHGCLHAQGYDHELTKDAKKMEALEIHILEKLGFANPY 156 >gi|73667540|ref|YP_303556.1| hypothetical protein Ecaj_0927 [Ehrlichia canis str. Jake] gi|123614591|sp|Q3YQP7|RRMF_EHRCJ RecName: Full=Probable rRNA maturation factor gi|72394681|gb|AAZ68958.1| protein of unknown function UPF0054 [Ehrlichia canis str. Jake] Length = 154 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 18/148 (12%) Query: 35 VFAKAVSNLISKGY-FVKE---------NIVE----LSLVFTDSHRIETLNFEYRGIDKP 80 V+ K N+I K FVK NI E +S+V ++ ++ LN+EYR +KP Sbjct: 6 VYYKKWYNVIRKPKSFVKNIINTSLIDLNIYEYKPIISIVLANNKLLQQLNYEYRKKNKP 65 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 TNVLSFP C LG+I ++ +++ E+ L E+H H++IHG LH+L Y Sbjct: 66 TNVLSFPYN-KLDKNC---YLGEIFISLDVLMNESVDLNIPIEHHTSHMLIHGLLHILDY 121 Query: 141 DHVDDKDACVMEGLERSILEDLGINDPY 168 DH + D +ME +E +L+ LGI +PY Sbjct: 122 DHEEPLDQYIMESIEIKLLDKLGIKNPY 149 >gi|238022353|ref|ZP_04602779.1| hypothetical protein GCWU000324_02260 [Kingella oralis ATCC 51147] gi|237866967|gb|EEP68009.1| hypothetical protein GCWU000324_02260 [Kingella oralis ATCC 51147] Length = 167 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAY 108 E+SL+ D N +YR D TNVLSF A ++G L + GD+++ Sbjct: 51 AEISLLLLDEADARAYNRDYRQKDYATNVLSF----ALNEGEMMLPAQDDTLRGDLIICP 106 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++ EA GK +H HL++HG LHL+GYDH++D +A ME LE +L LGI +PY Sbjct: 107 QVVRREATEQGKLLAHHYAHLVLHGTLHLMGYDHINDDEAEEMEALETRLLAQLGIANPY 166 Query: 169 E 169 E Sbjct: 167 E 167 >gi|294649234|ref|ZP_06726672.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292824901|gb|EFF83666.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 161 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 69/121 (57%), Gaps = 7/121 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEII 111 E+ + D LN +YR DKPTNVLSFP+ + SL+ LGD+V+ ++ Sbjct: 41 EIGIACVDLAESHELNLQYREKDKPTNVLSFPSDIP--EEMLSLLDAEPLGDLVICMPVV 98 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYEV 170 EA K +H HL++HG LHLLGYDH + DA ME LE +IL+ L I +PY+ Sbjct: 99 LQEAEEQQKTPMDHFTHLLVHGILHLLGYDHETSESDAEEMEALEIAILKKLNIANPYQA 158 Query: 171 D 171 D Sbjct: 159 D 159 >gi|297617803|ref|YP_003702962.1| hypothetical protein Slip_1638 [Syntrophothermus lipocalidus DSM 12680] gi|297145640|gb|ADI02397.1| protein of unknown function UPF0054 [Syntrophothermus lipocalidus DSM 12680] Length = 158 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 7/118 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-------SLMLGDIVLA 107 E+SLV D I + N EYRG+D+PT+VLSF +SD +LGDI+++ Sbjct: 39 TEVSLVLVDEEEIRSFNREYRGVDRPTDVLSFALNEGTSDEPGYEAPEEMEPVLGDIIIS 98 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E E + G + +L +HG LHLLGYDH D++ M +E +L+D+G++ Sbjct: 99 LETAEDQGRDYGHGLAREVAYLAVHGMLHLLGYDHQDEEARTEMRLMEERVLKDVGLD 156 >gi|251796244|ref|YP_003010975.1| hypothetical protein Pjdr2_2233 [Paenibacillus sp. JDR-2] gi|247543870|gb|ACT00889.1| protein of unknown function UPF0054 [Paenibacillus sp. JDR-2] Length = 165 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 14/124 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLML 101 E++L FTD+ +I LN EYR ID+PT+VLSF ++ S ML Sbjct: 41 EVTLTFTDNEQIHQLNREYRNIDRPTDVLSFAMQDEGTEELDIIFEVESEDEIDPISGML 100 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDIV++ E + ++ G E + L +HGFLHLLGYDH+DD M + ++L+ Sbjct: 101 GDIVISVEKAQEQSEDYGHSLEREIGFLFVHGFLHLLGYDHMDDAGEAEMTAKQEAVLQK 160 Query: 162 LGIN 165 G++ Sbjct: 161 AGLS 164 >gi|237809458|ref|YP_002893898.1| hypothetical protein Tola_2719 [Tolumonas auensis DSM 9187] gi|259646893|sp|C4LBN8|RRMF_TOLAT RecName: Full=Probable rRNA maturation factor gi|237501719|gb|ACQ94312.1| protein of unknown function UPF0054 [Tolumonas auensis DSM 9187] Length = 155 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/162 (40%), Positives = 89/162 (54%), Gaps = 14/162 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA D L + E F + + + F +E V + LV D L Sbjct: 5 LDLQIAC-----ADSTGLPS--ETQFQQWLDTAVLP--FQQEAEVTIRLV--DEAESNEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 N YRG DKPTNVLSFP F +LGD+++ +++E EA K E+H H+ Sbjct: 54 NLTYRGKDKPTNVLSFP--FECPPEVEDFPLLGDLIICRQVVEKEALEQQKTLESHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH++D++A ME LE+ ++ LG DPY+ D Sbjct: 112 VIHGSLHLLGYDHIEDEEAEEMEALEKEFMQTLGFPDPYKDD 153 >gi|226939223|ref|YP_002794294.1| metal-dependent hydrolase [Laribacter hongkongensis HLHK9] gi|254801582|sp|C1DAV4|RRMF_LARHH RecName: Full=Probable rRNA maturation factor gi|226714147|gb|ACO73285.1| Predicted metal-dependent hydrolase [Laribacter hongkongensis HLHK9] Length = 166 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 65/121 (53%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 + ++ L D+ + LN EYRG D TNVLSF ++GDIVLA E+ Sbjct: 45 RSRPAQIGLHVVDNAEGQRLNAEYRGKDSATNVLSFALNEGEEAVAGLPLMGDIVLAAEV 104 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 + EA GK+ H HL +HG LHL G+DH D +A ME LE IL LG DPY V Sbjct: 105 VAREAAEQGKDLHAHYAHLTVHGMLHLQGHDHETDTEAEAMEALETVILARLGYTDPYAV 164 Query: 171 D 171 + Sbjct: 165 E 165 >gi|332285329|ref|YP_004417240.1| hypothetical protein PT7_2076 [Pusillimonas sp. T7-7] gi|330429282|gb|AEC20616.1| hypothetical protein PT7_2076 [Pusillimonas sp. T7-7] Length = 164 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 19/168 (11%) Query: 2 SVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVF 61 ++ LPR L+ V++AL G KA + + G F L+L Sbjct: 12 AIPAAELPRWRLRRWVQHALSG------------VLKAEAEAGAPGRF---RAAALALRL 56 Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 D+ LN E+R D TNVL+F +G +S GDIVL ++ EA K Sbjct: 57 VDADEGRRLNREFRHKDYATNVLTFEYGI-DPEGVAS---GDIVLCLPVLYREAAEQKKS 112 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +H HL +HG LH LGYDH++ ++A ME LE +IL +G DPY+ Sbjct: 113 ILDHAAHLTVHGVLHALGYDHIEPEEATDMEELETAILAKMGFADPYQ 160 >gi|114770162|ref|ZP_01447700.1| hypothetical protein OM2255_11015 [alpha proteobacterium HTCC2255] gi|114548999|gb|EAU51882.1| hypothetical protein OM2255_11015 [alpha proteobacterium HTCC2255] Length = 172 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 25/169 (14%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I +E+ W D ++ L + F+ L +SK + E+S++ + +I LN Sbjct: 14 IVIEDKRWSD-FGIQDLADRTFSIVFDVLNLSKKW-------EISILACNDAKIIELNST 65 Query: 74 YRGIDKP--TNVLSFPTAFASSDGCSSL------------MLGDIVLAYEIIEIEANVLG 119 +R DKP TNVLS+P SD +LGDI ++++ E EA Sbjct: 66 FR--DKPIATNVLSWPAHNLKSDFIGKTPNKPILSNIEENLLGDIAISFDTCEREAVESN 123 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 F++H HL++HG LHLL YDH++D DA +ME LE +L+ +GI DPY Sbjct: 124 LHFKDHTTHLLVHGCLHLLNYDHINDLDALIMEKLETQLLKVMGIADPY 172 >gi|290968420|ref|ZP_06559959.1| metalloprotein, YbeY/ UPF0054 family [Megasphaera genomosp. type_1 str. 28L] gi|290781416|gb|EFD94005.1| metalloprotein, YbeY/ UPF0054 family [Megasphaera genomosp. type_1 str. 28L] Length = 157 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 3/112 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEII 111 E+S++ + I LN +YR ID+PT+VLSF DG + +LGDI+++ E + Sbjct: 38 AEISILLCHNEYIHALNKQYRHIDRPTDVLSFALNEGEDDGYDGPDTALLGDIIISLEKV 97 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A G FE L +L IHG LH+LGYDH++ +D M G E IL LG Sbjct: 98 AEQAAEYGHSFERELAYLTIHGMLHILGYDHMEPEDKAEMRGEEEFILRRLG 149 >gi|188996202|ref|YP_001930453.1| protein of unknown function UPF0054 [Sulfurihydrogenibium sp. YO3AOP1] gi|229557463|sp|B2V7H6|RRMF_SULSY RecName: Full=Probable rRNA maturation factor gi|188931269|gb|ACD65899.1| protein of unknown function UPF0054 [Sulfurihydrogenibium sp. YO3AOP1] Length = 152 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 69/111 (62%), Gaps = 3/111 (2%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 N VE+S+ TD+ RI +N E+RG DKPT+VLSFP + G +LGD++++ + Sbjct: 40 NNVEISITLTDNERIREINKEWRGKDKPTDVLSFPQ--DETIGYKYRLLGDVIISLPYAK 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL 162 +A +G ++ L++HG LHLLGYDH +++DA +M L+ I + L Sbjct: 98 AQAEEIGLTLREEVLRLLVHGILHLLGYDHETNEEDAKIMFDLQDKIFDKL 148 >gi|330994668|ref|ZP_08318591.1| Putative metalloprotease [Gluconacetobacter sp. SXCC-1] gi|329758309|gb|EGG74830.1| Putative metalloprotease [Gluconacetobacter sp. SXCC-1] Length = 170 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 2/115 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++V D + +N+ +RG ++PTNVL+F +A+ L GDI++A+E + EA Sbjct: 47 PVTVVLADDRTVRHMNWRHRGRNRPTNVLTF--EYAAPHAPGGLWGGDIIIAFETLAREA 104 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G+ HL HL++HG LHL YDH +A ME E IL LG +P++ Sbjct: 105 RAAGRSMAAHLAHLVVHGVLHLAQYDHHHPGEAREMEMEEARILSTLGFANPWKA 159 >gi|330960149|gb|EGH60409.1| metal-binding heat shock protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 166 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A E E LR CE+ G + EL++ D L Sbjct: 4 LDLQVASETPA-PREDQLRLWCEM------------GLRQRSADSELTIRLVDETEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R D TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKDYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKLIDAHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 110 IHGCLHLLGYDHLDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|295698305|ref|YP_003602960.1| hypothetical protein RIEPE_0079 [Candidatus Riesia pediculicola USDA] gi|291157124|gb|ADD79569.1| conserved hypothetical protein [Candidatus Riesia pediculicola USDA] Length = 151 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 78/135 (57%), Gaps = 10/135 (7%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD- 94 F K + ++S YF E E+S+ + TLN YRG D PTNVLSF +S+D Sbjct: 24 FIKWIDRVLS--YFSSEK--EISIYIASLEEMRTLNRLYRGRDYPTNVLSF----SSNDM 75 Query: 95 -GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G + LGD+++ +EI++ EA K ++H H+IIHG LHLLG H ++ D ME Sbjct: 76 RGFNFSFLGDLIICHEILKKEAKNQRKSIDSHWAHIIIHGCLHLLGIHHQNEIDLKKMES 135 Query: 154 LERSILEDLGINDPY 168 +E IL+ LG +P+ Sbjct: 136 MEIKILKRLGYPNPF 150 >gi|148549866|ref|YP_001269968.1| putative metalloprotease [Pseudomonas putida F1] gi|167012965|sp|A5W9H4|RRMF_PSEP1 RecName: Full=Probable rRNA maturation factor gi|148513924|gb|ABQ80784.1| protein of unknown function UPF0054 [Pseudomonas putida F1] gi|313500768|gb|ADR62134.1| Putative metalloprotease [Pseudomonas putida BIRD-1] Length = 157 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+Q A + A D LR CE+ + ++ E+++ D L Sbjct: 4 LDIQRATDAATPEDAA-LRRWCELALRQRSAD------------SEMTIRLVDEAEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D TNVLSFP A + +LGD+V+ ++E EA GK E H HL+ Sbjct: 51 NHTYRHKDYATNVLSFP-ADVPDELLDIPLLGDLVICVAVVEREAAEQGKSLEAHWAHLV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH++D++A ME LER +L +LG DPY D Sbjct: 110 IHGCLHLLGYDHIEDEEAEEMESLERELLAELGHPDPYADD 150 >gi|326692991|ref|ZP_08229996.1| putative metalloprotease [Leuconostoc argentinum KCTC 3773] Length = 157 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 11/135 (8%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TAF 90 +V N + + +N E+S+ F ++ I+ N EYRG+DKPT+V+SF F Sbjct: 23 SVINFAGQALALPDN-TEMSITFVNNDDIQRYNREYRGVDKPTDVISFAIEEGDDVFEQF 81 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDAC 149 A D + +GDI+++ ++I +A LG +E L L++HGFLHL GYDH+ D + Sbjct: 82 AEIDEIAK-NIGDIIVSVDVIATQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEK 140 Query: 150 VMEGLERSILEDLGI 164 M L+R IL+D G+ Sbjct: 141 EMFDLQRKILDDYGL 155 >gi|260438417|ref|ZP_05792233.1| putative metalloprotease [Butyrivibrio crossotus DSM 2876] gi|292809003|gb|EFF68208.1| putative metalloprotease [Butyrivibrio crossotus DSM 2876] Length = 166 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---------------CSSL 99 E+SL TD+ I +N E+R ID+PT+VLSFP + G L Sbjct: 38 AEVSLTLTDNKGIHDINKEFRNIDRPTDVLSFPMVEYETPGEFDFLENEYDCFNPETGEL 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 MLGDIV++ + +E +A G LI H LHL+GYDH+++ DA ME + IL Sbjct: 98 MLGDIVISLDKVEEQAANYGHSVTREYAFLIAHSMLHLMGYDHMEENDAKEMERRQAEIL 157 Query: 160 EDLGI 164 E LGI Sbjct: 158 ESLGI 162 >gi|258511950|ref|YP_003185384.1| hypothetical protein Aaci_1983 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478676|gb|ACV58995.1| protein of unknown function UPF0054 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 157 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 5/113 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEII 111 E+S++F D I LN YR +D+PT+VLSFP A A D MLGDIV++ + Sbjct: 43 EVSVLFVDDDAIHELNRTYRQVDRPTDVLSFPMNEGEALADPDDVEP-MLGDIVVSVDRA 101 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G E + L++HGFLHL GYDH D+ M GL+ IL+ +G+ Sbjct: 102 REQAEAYGHSLEREVAFLLVHGFLHLNGYDHEDEAGEREMFGLQEEILQGIGL 154 >gi|56963443|ref|YP_175174.1| metal-dependent hydrolase [Bacillus clausii KSM-K16] gi|59799080|sp|Q5WHE2|RRMF_BACSK RecName: Full=Probable rRNA maturation factor gi|56909686|dbj|BAD64213.1| metal-dependent hydrolase [Bacillus clausii KSM-K16] Length = 160 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 8/117 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--------MLGDIVLA 107 E+S+ FT I LN E+RGID+PT+VLSF +SD + +LGDIV++ Sbjct: 39 EVSVTFTTEEDIHELNREHRGIDRPTDVLSFALNDETSDFDPTFHEELGLPNLLGDIVIS 98 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +E +A G FE L L++HGFLHLLGYDH+++++ M + IL+ G+ Sbjct: 99 VPHVERQAADYGHSFERELAFLVVHGFLHLLGYDHMNEEEEKQMFTKQEEILQSYGL 155 >gi|189351456|ref|YP_001947084.1| unkown domain/putative metalloprotease fusion protein [Burkholderia multivorans ATCC 17616] gi|189335478|dbj|BAG44548.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 258 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 71/148 (47%), Gaps = 8/148 (5%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 +GDEI + K ++ + F ++++ F TLN YR D PT Sbjct: 117 YGDEITSEVRKTLPKRKLIAEWLEPALFAN---AQITVRFVGETEGRTLNAGYRHKDYPT 173 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 NVL+F A ++GD+VL ++E EA K H HL++HG LH GYD Sbjct: 174 NVLTF----AYDPAPDGTVIGDLVLCCPVVEKEAREQDKPLAAHYAHLLVHGALHAQGYD 229 Query: 142 H-VDDKDACVMEGLERSILEDLGINDPY 168 H D+DA ME LE IL LG +PY Sbjct: 230 HETSDEDAAEMEALEVDILAKLGFPNPY 257 >gi|147677227|ref|YP_001211442.1| putative metalloprotease [Pelotomaculum thermopropionicum SI] gi|189040627|sp|A5D3W2|RRMF_PELTS RecName: Full=Probable rRNA maturation factor gi|146273324|dbj|BAF59073.1| predicted metal-dependent hydrolase [Pelotomaculum thermopropionicum SI] Length = 152 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 15/157 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L ++AV+ AL G + R EV L ++GY + E+SLVF D I L Sbjct: 8 LQGKVAVDEALTG--LLTRAAQEV--------LKAEGYGEE---AEVSLVFVDDAYIHGL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YRG+D PT+VLSF + G L+LGD+V++ + E +A G + + Sbjct: 55 NRQYRGVDAPTDVLSFAMQEGEPLAGGEEELILGDVVISLQAAERQAGEYGHSLQREAAY 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HG LHLLGYDH +++ +M E +L L + Sbjct: 115 LAVHGVLHLLGYDHQGEEERKIMRRKEEEVLGRLNLT 151 >gi|319943042|ref|ZP_08017325.1| metal-dependent hydrolase [Lautropia mirabilis ATCC 51599] gi|319743584|gb|EFV95988.1| metal-dependent hydrolase [Lautropia mirabilis ATCC 51599] Length = 187 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 E EL L F LN +YRG D+ TNVL+F A ++ DIV+ ++ Sbjct: 72 EADAELVLRFVGREESRQLNHQYRGKDRSTNVLTFDYAH------EPVVQADIVICLPVL 125 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 + EA+ K NHL HL+IHG LH G DH+ D++A ME E +L I+DPY + Sbjct: 126 QDEAHTQNKPLRNHLAHLVIHGVLHAHGMDHLTDEEAAEMESREIELLHRFRIDDPYRL 184 >gi|161523783|ref|YP_001578795.1| fused unkown domain/putative metalloprotease [Burkholderia multivorans ATCC 17616] gi|221200107|ref|ZP_03573150.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221206740|ref|ZP_03579752.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221211287|ref|ZP_03584266.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|160341212|gb|ABX14298.1| protein of unknown function UPF0054 [Burkholderia multivorans ATCC 17616] gi|221168648|gb|EEE01116.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221173395|gb|EEE05830.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221180346|gb|EEE12750.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 237 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 71/148 (47%), Gaps = 8/148 (5%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 +GDEI + K ++ + F ++++ F TLN YR D PT Sbjct: 96 YGDEITSEVRKTLPKRKLIAEWLEPALFAN---AQITVRFVGETEGRTLNAGYRHKDYPT 152 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 NVL+F A ++GD+VL ++E EA K H HL++HG LH GYD Sbjct: 153 NVLTF----AYDPAPDGTVIGDLVLCCPVVEKEAREQDKPLAAHYAHLLVHGALHAQGYD 208 Query: 142 H-VDDKDACVMEGLERSILEDLGINDPY 168 H D+DA ME LE IL LG +PY Sbjct: 209 HETSDEDAAEMEALEVDILAKLGFPNPY 236 >gi|22125096|ref|NP_668519.1| putative metalloprotease [Yersinia pestis KIM 10] gi|45440925|ref|NP_992464.1| putative metalloprotease [Yersinia pestis biovar Microtus str. 91001] gi|108808472|ref|YP_652388.1| putative metalloprotease [Yersinia pestis Antiqua] gi|108811268|ref|YP_647035.1| putative metalloprotease [Yersinia pestis Nepal516] gi|145599897|ref|YP_001163973.1| putative metalloprotease [Yersinia pestis Pestoides F] gi|149365481|ref|ZP_01887516.1| hypothetical protein YPE_0646 [Yersinia pestis CA88-4125] gi|162421082|ref|YP_001606319.1| putative metalloprotease [Yersinia pestis Angola] gi|165925376|ref|ZP_02221208.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. F1991016] gi|165937587|ref|ZP_02226149.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. IP275] gi|166008624|ref|ZP_02229522.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. E1979001] gi|166212421|ref|ZP_02238456.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. B42003004] gi|167399628|ref|ZP_02305152.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422550|ref|ZP_02314303.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423805|ref|ZP_02315558.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467946|ref|ZP_02332650.1| hypothetical protein YpesF_08614 [Yersinia pestis FV-1] gi|218929699|ref|YP_002347574.1| putative metalloprotease [Yersinia pestis CO92] gi|229838166|ref|ZP_04458325.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895958|ref|ZP_04511128.1| conserved protein [Yersinia pestis Pestoides A] gi|229898723|ref|ZP_04513868.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901506|ref|ZP_04516628.1| conserved protein [Yersinia pestis Nepal516] gi|270489692|ref|ZP_06206766.1| metalloprotein, YbeY/ UPF0054family [Yersinia pestis KIM D27] gi|294504422|ref|YP_003568484.1| hypothetical protein YPZ3_2312 [Yersinia pestis Z176003] gi|26006931|sp|Q8ZDF0|RRMF_YERPE RecName: Full=Probable rRNA maturation factor gi|123245656|sp|Q1C529|RRMF_YERPA RecName: Full=Probable rRNA maturation factor gi|123246625|sp|Q1CKP5|RRMF_YERPN RecName: Full=Probable rRNA maturation factor gi|166228416|sp|A4TNY8|RRMF_YERPP RecName: Full=Probable rRNA maturation factor gi|226701655|sp|A9R6Y0|RRMF_YERPG RecName: Full=Probable rRNA maturation factor gi|21957951|gb|AAM84770.1|AE013722_9 hypothetical protein y1193 [Yersinia pestis KIM 10] gi|45435784|gb|AAS61341.1| Predicted metal-dependent hydrolase [Yersinia pestis biovar Microtus str. 91001] gi|108774916|gb|ABG17435.1| hypothetical protein YPN_1104 [Yersinia pestis Nepal516] gi|108780385|gb|ABG14443.1| hypothetical protein YPA_2479 [Yersinia pestis Antiqua] gi|115348310|emb|CAL21241.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145211593|gb|ABP41000.1| hypothetical protein YPDSF_2634 [Yersinia pestis Pestoides F] gi|149291894|gb|EDM41968.1| hypothetical protein YPE_0646 [Yersinia pestis CA88-4125] gi|162353897|gb|ABX87845.1| conserved hypothetical protein TIGR00043 [Yersinia pestis Angola] gi|165914337|gb|EDR32952.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. IP275] gi|165922983|gb|EDR40134.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. F1991016] gi|165993006|gb|EDR45307.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. E1979001] gi|166206352|gb|EDR50832.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. B42003004] gi|166958564|gb|EDR55585.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052132|gb|EDR63540.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057975|gb|EDR67721.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681435|gb|EEO77529.1| conserved protein [Yersinia pestis Nepal516] gi|229688271|gb|EEO80342.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694532|gb|EEO84579.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700881|gb|EEO88910.1| conserved protein [Yersinia pestis Pestoides A] gi|262362588|gb|ACY59309.1| hypothetical protein YPD4_2402 [Yersinia pestis D106004] gi|262366408|gb|ACY62965.1| hypothetical protein YPD8_2290 [Yersinia pestis D182038] gi|270338196|gb|EFA48973.1| metalloprotein, YbeY/ UPF0054family [Yersinia pestis KIM D27] gi|294354881|gb|ADE65222.1| hypothetical protein YPZ3_2312 [Yersinia pestis Z176003] gi|320016177|gb|ADV99748.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 157 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E+++ D LN YRG DK TNVLSFP F + +LGD+++ +++ Sbjct: 36 QPVSEVTIRLVDEAESHDLNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVV 93 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E EA K H H+++HG LHLLGYDH+DD++A ME +E I+ LG DPY Sbjct: 94 EKEAIEQEKALLAHWAHMVVHGSLHLLGYDHIDDEEAEEMELIETEIMHGLGYPDPY 150 >gi|237747923|ref|ZP_04578403.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379285|gb|EEO29376.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 166 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 71/131 (54%), Gaps = 18/131 (13%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSS-------------- 98 ++L F D+ TLN EYR D TNVL+FP F +D S Sbjct: 35 ITLRFVDAEEGRTLNREYREKDYATNVLTFPYDDMDEFDLTDAVPSRPEPEADRDDIPEQ 94 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + DIVL +++E EA GK E H HL++HG LH GYDH++D++A ME LE+ I Sbjct: 95 MAQADIVLCTDVLEKEAKEQGKSLEAHAAHLVVHGTLHAQGYDHLNDEEAEEMETLEKQI 154 Query: 159 LEDLGINDPYE 169 L LGI +PYE Sbjct: 155 LAKLGIANPYE 165 >gi|225025308|ref|ZP_03714500.1| hypothetical protein EIKCOROL_02206 [Eikenella corrodens ATCC 23834] gi|224941926|gb|EEG23135.1| hypothetical protein EIKCOROL_02206 [Eikenella corrodens ATCC 23834] Length = 175 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 10/145 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----- 87 E F + + Y E+ L+ D N +YR D TNVLSF Sbjct: 33 EAQFRRWAWQAVKSQY----RRAEIGLLLLDEETARAYNRDYRQKDYATNVLSFALDEGE 88 Query: 88 -TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A A G ++ GD+V+ +++ EA GK E H HL +HG LHL+G+DH++ Sbjct: 89 QAALAGLSGSLPVLRGDLVICPQVVVREAAEQGKILEAHFAHLTLHGVLHLMGHDHIEPD 148 Query: 147 DACVMEGLERSILEDLGINDPYEVD 171 +A ME LE ++ LG +PY D Sbjct: 149 EAEAMEALEIRLMNQLGYPNPYAQD 173 >gi|255020723|ref|ZP_05292783.1| hypothetical protein ACA_1687 [Acidithiobacillus caldus ATCC 51756] gi|254969839|gb|EET27341.1| hypothetical protein ACA_1687 [Acidithiobacillus caldus ATCC 51756] Length = 169 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 78/144 (54%), Gaps = 7/144 (4%) Query: 29 RTLCEVVFAKAV---SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + LC A A+ S ++ G V+ + LSL F + + LN ++R PTN LS Sbjct: 25 QRLCRTAIAAALTVPSPRLANGDGVR---IGLSLAFVGAAAMAELNGQFRQRPYPTNCLS 81 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 FPT + + LGDIVLA I+ EA GK +H HL+IH LHLLG+DH + Sbjct: 82 FPTP-SGAGPYRQDFLGDIVLAPAIVLREAVEQGKRPADHYRHLLIHSTLHLLGFDHEEA 140 Query: 146 KDACVMEGLERSILEDLGINDPYE 169 +A ME LE +L +G+ DPY+ Sbjct: 141 AEAAEMEALETHLLAQMGVADPYQ 164 >gi|312898796|ref|ZP_07758184.1| conserved hypothetical protein TIGR00043 [Megasphaera micronuciformis F0359] gi|310619958|gb|EFQ03530.1| conserved hypothetical protein TIGR00043 [Megasphaera micronuciformis F0359] Length = 157 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 3/113 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEII 111 ELS+V D+ I LN YR ID+PT+VLSF DG + +LGDIV++ + Sbjct: 38 AELSVVLCDNAYIHELNKTYRNIDRPTDVLSFALNEGEEEGYDGPDTKLLGDIVISLDKT 97 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ G FE L +L +HG LH+LGYDH+ D+D M E +L LG Sbjct: 98 REQSEEYGHSFERELAYLTVHGMLHILGYDHMTDEDKAEMRKEEEFVLHRLGF 150 >gi|88606960|ref|YP_505804.1| hypothetical protein APH_1290 [Anaplasma phagocytophilum HZ] gi|123494243|sp|Q2GIJ7|RRMF_ANAPZ RecName: Full=Probable rRNA maturation factor gi|88598023|gb|ABD43493.1| conserved hypothetical protein TIGR00043 [Anaplasma phagocytophilum HZ] Length = 154 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 4/99 (4%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YR I+KPTNVLSF S + C LG+I L+ + + E+ LG E H H+ Sbjct: 56 LNHKYRNINKPTNVLSFNYEALSHNCC----LGEIFLSIDRLTYESKTLGVEVHAHFTHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +IHG LH+LGYDH +DA M+ LE +L I +PY Sbjct: 112 LIHGVLHILGYDHEVPEDAQEMQALEIDLLSKRSIENPY 150 >gi|300173400|ref|YP_003772566.1| putative metalloprotease [Leuconostoc gasicomitatum LMG 18811] gi|299887779|emb|CBL91747.1| Putative metalloprotease [Leuconostoc gasicomitatum LMG 18811] Length = 160 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 15/123 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM------------LG 102 E+S+ F +S I+ N EYRG+DKPT+V+SF A D L +G Sbjct: 38 TEMSVTFVNSDEIQRYNREYRGVDKPTDVISF--ALEEGDDTFDLSPEGDWADDIPKNIG 95 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILED 161 DI+++ +II +A+ LG +E L L++HGFLHL GYDH+ D + M L+R IL+D Sbjct: 96 DILVSVDIIASQADYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQRKILDD 155 Query: 162 LGI 164 G+ Sbjct: 156 YGL 158 >gi|325981204|ref|YP_004293606.1| hypothetical protein NAL212_0499 [Nitrosomonas sp. AL212] gi|325530723|gb|ADZ25444.1| protein of unknown function UPF0054 [Nitrosomonas sp. AL212] Length = 168 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 76/166 (45%), Gaps = 21/166 (12%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 V++ N RL +Q A E C V + +K ++E V L LV Sbjct: 15 VQRANSFRLMVQYATE-------------CTAVPGRPQFRRWAKVALMQEAEVVLRLV-- 59 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D LN ++R + TNVL+F D L GDI+L +I EA K Sbjct: 60 DEKEGRELNQQFRNKNYATNVLTF-----VYDDAEPLT-GDIILCAPVISEEAQQQNKNL 113 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHL GYDH++D DA ME LE IL LG +PY Sbjct: 114 MAHYAHLTIHGLLHLQGYDHIEDSDATAMEQLEIQILTKLGFTNPY 159 >gi|258516221|ref|YP_003192443.1| putative metalloprotease [Desulfotomaculum acetoxidans DSM 771] gi|257779926|gb|ACV63820.1| protein of unknown function UPF0054 [Desulfotomaculum acetoxidans DSM 771] Length = 154 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 5/108 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEII 111 E+SLV TD I LN +YRG+D+PT+VLSF +++ L LGD++++ E Sbjct: 40 EVSLVLTDDRYIHELNRDYRGVDRPTDVLSFAQNEGEQLQAAEEAEEL-LGDVIISLETA 98 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E +A G FE L +HG LHLL YDH++++D +M E + Sbjct: 99 ERQAEEYGHSFEREAAFLTVHGVLHLLAYDHIEEEDRVIMRSKEEEAM 146 >gi|254995418|ref|ZP_05277608.1| hypothetical protein AmarM_05793 [Anaplasma marginale str. Mississippi] Length = 154 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 4/99 (4%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRGI K TNVLSF S C LG+I L+ E I E+ + +H H+ Sbjct: 55 LNSQYRGIHKATNVLSFSYEKLSPGCC----LGEIYLSMERIAEESLEMDVAVRSHFFHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +IHG LH+LGYDH + +DA M+ LE +L LGI +PY Sbjct: 111 LIHGMLHILGYDHEEPEDAITMQALEVGLLAKLGIRNPY 149 >gi|332981673|ref|YP_004463114.1| hypothetical protein Mahau_1094 [Mahella australiensis 50-1 BON] gi|332699351|gb|AEE96292.1| protein of unknown function UPF0054 [Mahella australiensis 50-1 BON] Length = 161 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 10/120 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDG---------CSSLMLGDI 104 +E+S++ D+ +I+ LN ++RGID+ T+VLSFP + S +G L+LGDI Sbjct: 39 IEVSIILIDNEQIKELNRDFRGIDRETDVLSFPAIDYESDEGEPVEDINMDTGDLILGDI 98 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ E +A G F + L +HG HLLGYDH D+++A +M E +L LG+ Sbjct: 99 AISVEKAAQQAEEYGHSFYREMGFLTVHGMFHLLGYDHEDEEEATIMRQREEMVLSSLGL 158 >gi|118594512|ref|ZP_01551859.1| hypothetical protein MB2181_02550 [Methylophilales bacterium HTCC2181] gi|118440290|gb|EAV46917.1| hypothetical protein MB2181_02550 [Methylophilales bacterium HTCC2181] Length = 153 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 18/135 (13%) Query: 45 SKGYFVKENIVELSLVFTDSH-----------RIETLNFEYRGIDKPTNVLSFPTAFASS 93 + Y K+N + VF D + + LN YR ++K TNVLSF Sbjct: 17 QRKYLSKKNCYQWLSVFKDCNLTLTIRLVGESESKNLNNSYRNLNKATNVLSFQIE---- 72 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 ++GD+VL + I++ EA + K+ +H HL+IHG LHL+G DH ++ DA ME Sbjct: 73 ---DKPIIGDLVLCHAIVKKEARIQRKKIHDHYAHLLIHGCLHLMGLDHENEDDADAMEK 129 Query: 154 LERSILEDLGINDPY 168 E +LE LGI +PY Sbjct: 130 KEILLLEKLGIKNPY 144 >gi|329891158|ref|ZP_08269501.1| uncharacterized protein family UPF0054 family protein [Brevundimonas diminuta ATCC 11568] gi|328846459|gb|EGF96023.1| uncharacterized protein family UPF0054 family protein [Brevundimonas diminuta ATCC 11568] Length = 156 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 67/113 (59%), Gaps = 5/113 (4%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ D ++ LN +R D+PTNVLSFP A ++ LGD+VL Y EA Sbjct: 39 VLLADDAAVQDLNKRFRDKDRPTNVLSFPAAESAFP-----HLGDVVLGYAYCAAEAETQ 93 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HL++HG LHLLG DH DD +A ME ER IL +LG+ DPY + Sbjct: 94 GKTLSDHLSHLVVHGVLHLLGRDHEDDAEAEEMEAEEREILAELGVADPYAAE 146 >gi|257454806|ref|ZP_05620057.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] gi|257447739|gb|EEV22731.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] Length = 208 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 3/126 (2%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDI 104 G F+ + VEL + T+ +N + RG D TN+LS+ + + + +L LG++ Sbjct: 83 GEFIFQKTVELEIYVTEPVEARAINLDARGKDYATNILSYASELPEAVLELLPALPLGEL 142 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLG 163 V+ + ++ +A GK E HL HL++HG LHLLG+DH + + ME +E ++L+ L Sbjct: 143 VICHAVVVSQAAEQGKTVEQHLTHLLVHGMLHLLGFDHELGQAEQDEMEAIEIAVLDKLS 202 Query: 164 INDPYE 169 + +PYE Sbjct: 203 VANPYE 208 >gi|89100467|ref|ZP_01173329.1| hypothetical protein B14911_05536 [Bacillus sp. NRRL B-14911] gi|89084810|gb|EAR63949.1| hypothetical protein B14911_05536 [Bacillus sp. NRRL B-14911] Length = 156 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 11/124 (8%) Query: 51 KENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-------M 100 KEN+ ELS+ F + RI+ +N EYR DKPT+V+SF +G + + + Sbjct: 32 KENVEAGSELSVTFVTNDRIQEINREYRDKDKPTDVISFAME-ELGEGETEIAGEGIPRV 90 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDI+++ + E +A G FE L L +HGFLHLLGYDH D++ M G ++ IL+ Sbjct: 91 LGDIIISIQRTEEQAGEYGHSFERELGFLAVHGFLHLLGYDHETDEEEREMFGRQKDILD 150 Query: 161 DLGI 164 + G+ Sbjct: 151 EYGL 154 >gi|315651385|ref|ZP_07904410.1| metal-dependent hydrolase [Eubacterium saburreum DSM 3986] gi|315486344|gb|EFU76701.1| metal-dependent hydrolase [Eubacterium saburreum DSM 3986] Length = 168 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 15/126 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---------------CSSL 99 E+S+ D I +N EYRGIDK T+VLSFP S G L Sbjct: 42 AEVSVTIVDDEEIRKINSEYRGIDKSTDVLSFPFNEFESPGNFDDIEESVDAFNPESGEL 101 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDI+L+ E I +A G L L++H LHL+GYDH+ D+D +ME +R IL Sbjct: 102 LLGDIILSTEHIIEQAREYGHSETRELAFLVVHSMLHLMGYDHIADEDRVIMEDRQRKIL 161 Query: 160 EDLGIN 165 + GI+ Sbjct: 162 DLEGIS 167 >gi|189183988|ref|YP_001937773.1| putative metalloprotease [Orientia tsutsugamushi str. Ikeda] gi|189180759|dbj|BAG40539.1| hypothetical protein OTT_1081 [Orientia tsutsugamushi str. Ikeda] Length = 167 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 11/160 (6%) Query: 18 ENALWGD--EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 ++++W + EI+L + +++ N+ +K V++ E++++ T+ H ++ LNF +R Sbjct: 10 QHSIWRNHKEINLCYVKKIIKTTLYHNIFAKLQSVQQ--AEVAILLTNDHEMQNLNFTHR 67 Query: 76 GIDKPTNVLSFPTAFASSDGCSSL-------MLGDIVLAYEIIEIEANVLGKEFENHLVH 128 I+KPTNVLSFP S+L LGDI Y I EA K F NH H Sbjct: 68 KINKPTNVLSFPDQVLDWQNLSTLDIQDNYIYLGDIAFGYNTIAKEAVEQQKTFINHFTH 127 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L+IH LHLLG+DH D +A +ME LE ++L I PY Sbjct: 128 LLIHAILHLLGFDHQHDSEAIIMEELEVNLLAKFSIASPY 167 >gi|319940869|ref|ZP_08015208.1| hypothetical protein HMPREF9464_00427 [Sutterella wadsworthensis 3_1_45B] gi|319805751|gb|EFW02532.1| hypothetical protein HMPREF9464_00427 [Sutterella wadsworthensis 3_1_45B] Length = 152 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 6/113 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E ++ F D LN ++R D TNVL+F +++ DIV+ ++E +A Sbjct: 37 EFTVRFVDEEEGRELNHQFRRKDYATNVLTFDYQ------REPVVMADIVICPAVLERQA 90 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +HL HL+IHG LH GYDH+DD++A VME E I+E LG +PY Sbjct: 91 AEQQKPLRDHLAHLLIHGVLHAQGYDHLDDEEAEVMEARETEIMESLGFPNPY 143 >gi|74318722|ref|YP_316462.1| hypothetical protein Tbd_2704 [Thiobacillus denitrificans ATCC 25259] gi|123611152|sp|Q3SFF3|RRMF_THIDA RecName: Full=Probable rRNA maturation factor gi|74058217|gb|AAZ98657.1| Protein of unknown function UPF0054 [Thiobacillus denitrificans ATCC 25259] Length = 147 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 10/141 (7%) Query: 34 VVFAKAVSNLISKGYFVK------ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 V FA +L S+ + E+ E+++ D+ + LN YR D NVL+F Sbjct: 9 VQFASGADDLPSRAQIRRWVAAALEHDAEITVRIVDADEAQALNRAYRDKDYVPNVLTF- 67 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + +L+ GD+V+ ++E EA GK +H H+ +HG LHL GYDHVD D Sbjct: 68 ---EYGEIAPALLGGDVVICAPVVEREAREQGKPLGHHYAHMTVHGVLHLQGYDHVDAAD 124 Query: 148 ACVMEGLERSILEDLGINDPY 168 A ME E +IL+ I PY Sbjct: 125 AERMETREAAILKRFHIPHPY 145 >gi|33519779|ref|NP_878611.1| hypothetical protein Bfl316 [Candidatus Blochmannia floridanus] gi|46577400|sp|Q7VRA3|RRMF_BLOFL RecName: Full=Probable rRNA maturation factor gi|33504124|emb|CAD83386.1| predicted metal-dependent hydrolase [Candidatus Blochmannia floridanus] Length = 153 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 2/108 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ D + LN+ Y G PTNVLSFP F + +LGDIV+ +IIE E Sbjct: 41 ELTIRIVDIQEMLYLNWYYLGKKYPTNVLSFP--FEPPSEIQTSLLGDIVICKQIIEYEN 98 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + H H+IIHG LHLLGYDH+ D+DA +M +E +I+ LG Sbjct: 99 RKNNIFSDVHWAHMIIHGSLHLLGYDHICDEDAELMNAMELNIIRTLG 146 >gi|309790640|ref|ZP_07685193.1| protein of unknown function UPF0054 [Oscillochloris trichoides DG6] gi|308227306|gb|EFO80981.1| protein of unknown function UPF0054 [Oscillochloris trichoides DG6] Length = 161 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 7/116 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-----PTAFASSDGCSSLMLGDIVLAYEI 110 E+ ++ TD I TLN +YRG+D PT+VLSF P+AF + G LGDI ++Y+ Sbjct: 44 EVGVLITDDAHIHTLNRDYRGVDAPTDVLSFADDGPPSAFVVA-GSGPRYLGDIAISYQR 102 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGIN 165 + +A G L +L HG LHLLGYDH +DA M E +++ +LG++ Sbjct: 103 VLAQAAEYGHSPARELAYLATHGTLHLLGYDHERGPEDAAAMRLREETVMAELGLS 158 >gi|167758251|ref|ZP_02430378.1| hypothetical protein CLOSCI_00589 [Clostridium scindens ATCC 35704] gi|167664148|gb|EDS08278.1| hypothetical protein CLOSCI_00589 [Clostridium scindens ATCC 35704] Length = 164 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 15/124 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGC-----SSLM 100 E+SL+ T + I +N ++RGID+PT+VLSFP SD C LM Sbjct: 39 EVSLLLTQNEEIRKMNRDFRGIDRPTDVLSFPMTDYPVPGQFGFLEESDDCFHPESGELM 98 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDIV++ E + +A G LI H LHL+GYDH+ D++ +ME ++ I+E Sbjct: 99 LGDIVISKEKVLSQAEEFGHSALREYAFLIAHSVLHLIGYDHMQDEERQIMERKQKEIME 158 Query: 161 DLGI 164 L I Sbjct: 159 RLNI 162 >gi|205374159|ref|ZP_03226959.1| putative metalloprotease [Bacillus coahuilensis m4-4] Length = 158 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 6/116 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAYE 109 E+SL F + RI+ +N EYR D+PT+V+SF + + +LGDI+++ E Sbjct: 41 EVSLTFVTNERIQQVNREYRDKDQPTDVISFALEEMDENEIRIIGEGIPRVLGDIIISVE 100 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A+ G F+ L L +HGFLHLLGYDH++++D VM ++ IL++ G+ Sbjct: 101 RTREQASEYGHSFQRELGFLALHGFLHLLGYDHINEQDEKVMFQRQKDILDEFGLK 156 >gi|169832186|ref|YP_001718168.1| cytidine deaminase [Candidatus Desulforudis audaxviator MP104C] gi|169639030|gb|ACA60536.1| cytidine deaminase [Candidatus Desulforudis audaxviator MP104C] Length = 301 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 8/141 (5%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---F 90 + +AV + ++ G VE+S+ D I LN +RG D+PT+VLSFP Sbjct: 20 ALITRAVESALAGG---DRRRVEVSVALVDDEYIHDLNRRFRGQDRPTDVLSFPMGEEEP 76 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + D L+LGD+V++ +A G + + L +HG LHLLGYDH D+DA Sbjct: 77 GAGDEPGVLLLGDVVISLPAAARQAAEYGHGLDREVARLAVHGTLHLLGYDHEQDEDASR 136 Query: 151 MEGLERSILEDLGIND--PYE 169 M+ E ++L LG P+E Sbjct: 137 MQEREDAVLAVLGKRGTVPWE 157 >gi|225175056|ref|ZP_03729052.1| protein of unknown function UPF0054 [Dethiobacter alkaliphilus AHT 1] gi|225169232|gb|EEG78030.1| protein of unknown function UPF0054 [Dethiobacter alkaliphilus AHT 1] Length = 155 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 8/128 (6%) Query: 43 LISKGYFVKENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDG 95 +I+K V N E+SL D I LN +R +D PT+VLSFP G Sbjct: 23 IITKAALVDHNFPSDAEVSLTLCDDATIHELNKTWRSVDAPTDVLSFPLLGDMTLKVPPG 82 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LMLGD++++ E +A G E +++L +HG LHLLGYDH+++++ M LE Sbjct: 83 -EELMLGDVIISVERARAQAQEFGHSVEREILYLYVHGLLHLLGYDHLEEEEKREMRSLE 141 Query: 156 RSILEDLG 163 +L+++G Sbjct: 142 EKLLKEVG 149 >gi|325290529|ref|YP_004266710.1| metalloprotease ybeY [Syntrophobotulus glycolicus DSM 8271] gi|324965930|gb|ADY56709.1| metalloprotease ybeY [Syntrophobotulus glycolicus DSM 8271] Length = 168 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 18/149 (12%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----- 86 EV+ A+ ++ + + + E+ ++FTD+ I LN +YRGID PT+VLSF Sbjct: 20 WEVLIAQGITRALQEAEGPENG--EIGVLFTDNETIRGLNRDYRGIDNPTDVLSFALQEK 77 Query: 87 ----PTAF-----ASSDGCSSL--MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 P + DG L MLGDIV++ + +A G E +V L +HG L Sbjct: 78 TEEEPDIYFHHDEDQDDGFPDLGAMLGDIVISVQRAREQAAEYGHSLEREIVFLAVHGTL 137 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH ++ M LE I+E +G+ Sbjct: 138 HLLGYDHQTEEQRSGMRELEERIMEKIGL 166 >gi|291550420|emb|CBL26682.1| conserved hypothetical protein TIGR00043 [Ruminococcus torques L2-14] Length = 165 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 16/126 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----------------TAFASSDGCSS 98 E++L+ T++ +I +N E RGID+PT+VLSFP +A A + Sbjct: 38 AEINLLLTENAQIHEMNLEQRGIDRPTDVLSFPMIEYEEPGDFSVIDEESAEAFNPESGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LMLGDIV++ E + +A G + LI H LHL GYDH+ D++ VME ++ I Sbjct: 98 LMLGDIVISKEKVLSQAEEYGHLPKREYAFLIAHSMLHLFGYDHMVDEERVVMEAKQKEI 157 Query: 159 LEDLGI 164 +E +GI Sbjct: 158 MEKVGI 163 >gi|313895824|ref|ZP_07829378.1| translation metalloprotein YbeY [Selenomonas sp. oral taxon 137 str. F0430] gi|312975249|gb|EFR40710.1| translation metalloprotein YbeY [Selenomonas sp. oral taxon 137 str. F0430] Length = 154 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 15/147 (10%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 GDE +R E V G E+S+ T+ I +N +YRG+D+PT+ Sbjct: 18 GDEAAVRRAVETV-----------GRLYGAEGAEVSVTLTNDAYIHEINRQYRGVDRPTD 66 Query: 83 VLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 V+SF + D + +LGD+V++ E +A G + L L +HG LHLL Sbjct: 67 VISFALMESEEPEILDDPAGDVLGDLVISLERARAQAEEYGHSYLRELSFLTVHGMLHLL 126 Query: 139 GYDHVDDKDACVMEGLERSILEDLGIN 165 GYDH++D + ME +R ++E LGI Sbjct: 127 GYDHMEDAERAEMEEEQRHVMEALGIG 153 >gi|145590039|ref|YP_001156636.1| hypothetical protein Pnuc_1860 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189039044|sp|A4T008|RRMF_POLSQ RecName: Full=Probable rRNA maturation factor gi|145048445|gb|ABP35072.1| protein of unknown function UPF0054 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 155 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 61/112 (54%), Gaps = 5/112 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L+L F +S + LN +R TNVL+FP + S + DI+ +I EA Sbjct: 45 LTLRFVNSTEGKKLNAAFRKKHYATNVLTFPY-----EHSKSALSADIIFCLPVIRKEAK 99 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GK + HL HLI+HG LH G+DH +K+ ME LE ++L+ LG DPY Sbjct: 100 EQGKTVKAHLAHLIVHGCLHAQGFDHEHEKETKKMEKLEVALLKKLGFTDPY 151 >gi|315645981|ref|ZP_07899102.1| hypothetical protein PVOR_11039 [Paenibacillus vortex V453] gi|315278742|gb|EFU42056.1| hypothetical protein PVOR_11039 [Paenibacillus vortex V453] Length = 165 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 14/124 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--------------ML 101 E+ L F D +I LN EYRGID+PT+VLSF ++D + +L Sbjct: 41 EVDLTFVDDGQIHELNREYRGIDRPTDVLSFAMNEITNDELEIIYELDEGEELESVPDVL 100 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI+++ + ++++ G E L L +HGFLHLLGYDH D+ M G + ++L + Sbjct: 101 GDIIISVQRAKLQSEEYGHSLERELGFLFVHGFLHLLGYDHQDEASEAAMMGKQEAVLAE 160 Query: 162 LGIN 165 +G+ Sbjct: 161 VGLT 164 >gi|303228961|ref|ZP_07315771.1| translation metalloprotein YbeY [Veillonella atypica ACS-134-V-Col7a] gi|302516375|gb|EFL58307.1| translation metalloprotein YbeY [Veillonella atypica ACS-134-V-Col7a] Length = 158 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 18/166 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI+ ++ + D T E V K V + +S+ Y ++++ ELS++ D+ +I L Sbjct: 1 MHIQISYDDGIARD-----TKIEEVIQK-VCDEVSRVYGLEDD--ELSILLCDNKKIHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----MLGDIVLAYEIIEIEANVLGKEFENH 125 N EYRGID+PT+VLSF A D +LGD++L+ E +A G FE Sbjct: 53 NKEYRGIDRPTDVLSF--ALNEGDDYEGSEEEHHLLGDMILSLERAHEQAVEYGHSFERE 110 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPY 168 L +L H LH+LGYDH+ D+D M E +L +LG + PY Sbjct: 111 LAYLTTHSCLHILGYDHMTDEDKKEMRTEEEFVLSNLGYVREDQPY 156 >gi|167746974|ref|ZP_02419101.1| hypothetical protein ANACAC_01686 [Anaerostipes caccae DSM 14662] gi|167653934|gb|EDR98063.1| hypothetical protein ANACAC_01686 [Anaerostipes caccae DSM 14662] Length = 165 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 17/144 (11%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 CE++ + V + Y E++L+ ++ I +N E RGID+PT+VLSFP Sbjct: 17 CEMIAGQVVEAAVD--YVTCPFECEVNLMLVGNNEIHRINLEQRGIDRPTDVLSFPMVEY 74 Query: 92 SSDGC---------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 GC LMLGDIV++ + + +A G E LI H LH Sbjct: 75 EKPGCFDGLEEDPAAFHPDSGELMLGDIVISMDKAKEQAEAYGHSLEREYAFLIAHSMLH 134 Query: 137 LLGYDHVDDKDACVMEGLERSILE 160 L GYDH++D++ VME + IL+ Sbjct: 135 LFGYDHMEDEERAVMEEKQEEILQ 158 >gi|323703317|ref|ZP_08114967.1| protein of unknown function UPF0054 [Desulfotomaculum nigrificans DSM 574] gi|323531680|gb|EGB21569.1| protein of unknown function UPF0054 [Desulfotomaculum nigrificans DSM 574] Length = 153 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L ++V A + +L ++GY + E+ L+F D I++LN EYRGIDKPT+VLSF Sbjct: 18 LYQLVEAVVMESLKAEGYSTE---AEVGLIFVDDGYIQSLNAEYRGIDKPTDVLSFAMHE 74 Query: 91 ASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 +LGDIV++ ++ G FE + L HG LHLLGYDH + + Sbjct: 75 GEPMPEEEEAEDLLGDIVISLPTALRQSKEYGHSFEREVAFLTAHGALHLLGYDHQTEAE 134 Query: 148 ACVMEGLERSILEDLGIN 165 VM E +IL L I Sbjct: 135 RQVMREKEEAILGRLNIT 152 >gi|229086872|ref|ZP_04219032.1| metalloprotease [Bacillus cereus Rock3-44] gi|228696447|gb|EEL49272.1| metalloprotease [Bacillus cereus Rock3-44] Length = 136 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI+ +N +YR D+PT+V+SF MLGD++ Sbjct: 16 EDGTELSVTFVDNERIQEINRDYRDKDQPTDVISFAMEDMGEGEMEIVGVEMPRMLGDLI 75 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ D+D M G ++ ILE G+ Sbjct: 76 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTDEDEKEMFGKQKEILEAFGLG 135 >gi|269958362|ref|YP_003328149.1| hypothetical protein ACIS_00135 [Anaplasma centrale str. Israel] gi|269848191|gb|ACZ48835.1| hypothetical protein ACIS_00135 [Anaplasma centrale str. Israel] Length = 154 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 4/99 (4%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRGI K TNVLSF S C LG+I L+ E I E+ + +H H+ Sbjct: 55 LNSQYRGIHKATNVLSFSYEKLSPGCC----LGEIYLSMERIAEESLEMDVAVRSHFFHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +IHG LH+LGYDH + ++A M+ LE +L LGI +PY Sbjct: 111 LIHGMLHILGYDHEEPEEATTMQALEVGLLAKLGIRNPY 149 >gi|330818259|ref|YP_004361964.1| hypothetical protein bgla_1g34050 [Burkholderia gladioli BSR3] gi|327370652|gb|AEA62008.1| hypothetical protein bgla_1g34050 [Burkholderia gladioli BSR3] Length = 269 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 8/148 (5%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 +GDEI ++ K ++ +S F + +L++ F LN YR D PT Sbjct: 128 YGDEIAASQRKKLPKPKLIAEWLSTALF---SDAQLTVRFVGEKEGRELNGGYRKKDYPT 184 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 NVL+F A +GD+VL ++E EA K H HL++HG LH GYD Sbjct: 185 NVLTF----AYDQAPDGTTIGDLVLCCPVVEKEAGEQDKTLVAHYAHLLVHGALHAQGYD 240 Query: 142 H-VDDKDACVMEGLERSILEDLGINDPY 168 H ++DA ME LE IL LG +PY Sbjct: 241 HERGEEDAAEMEALEIDILAKLGFPNPY 268 >gi|228993045|ref|ZP_04152968.1| metalloprotease [Bacillus pseudomycoides DSM 12442] gi|228766693|gb|EEM15333.1| metalloprotease [Bacillus pseudomycoides DSM 12442] Length = 143 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI+ +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGTELSVTFVDNERIQEINRDYRDKDQPTDVISFAMEDMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ D+D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTDEDEQEMFGKQKEILEAFGLG 142 >gi|228999095|ref|ZP_04158677.1| metalloprotease [Bacillus mycoides Rock3-17] gi|229006643|ref|ZP_04164277.1| metalloprotease [Bacillus mycoides Rock1-4] gi|228754504|gb|EEM03915.1| metalloprotease [Bacillus mycoides Rock1-4] gi|228760712|gb|EEM09676.1| metalloprotease [Bacillus mycoides Rock3-17] Length = 143 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI+ +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGTELSVTFVDNERIQEINRDYRDKDQPTDVISFAMEDMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ D+D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTDEDEKEMFGKQKEILEAFGLG 142 >gi|332686716|ref|YP_004456490.1| metal-dependent hydrolase [Melissococcus plutonius ATCC 35311] gi|332370725|dbj|BAK21681.1| metal-dependent hydrolase [Melissococcus plutonius ATCC 35311] Length = 159 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 25/149 (16%) Query: 41 SNLISKGYFVK--------------ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +N S+ YF K + E+S+ FT + +I+ +N ++RG + PT+V+SF Sbjct: 9 TNQFSENYFTKIKELLQFSADFLKLPDTTEMSVTFTTNEKIQQINQKFRGKNVPTDVISF 68 Query: 87 PTAFASSDGCSSLM-----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 D ++ LGDI+++ E E +A G FE L L +HGFL Sbjct: 69 ALEDEGEDEFPIILDEMLTSLPPKNLGDIIISIEKAEEQAQDYGHSFERELGFLAVHGFL 128 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HL GYDH++++D M L+R IL+D G+ Sbjct: 129 HLNGYDHMNEEDEKEMFDLQRKILDDYGL 157 >gi|332969799|gb|EGK08810.1| metal-dependent hydrolase [Psychrobacter sp. 1501(2011)] Length = 184 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 5/117 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 +L + TDS LN E R D TN+LS+P+ AF ++ + LG++V+ +E++E Sbjct: 66 QLGVYLTDSVEGRELNLEARDKDYATNILSYPSDLPAFILTEMLE-IALGELVICHEVVE 124 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 +A K +H HL++HG LHLLG+DH + ++ MEG E +ILE LGI +PY Sbjct: 125 QQAREQHKTVADHATHLLVHGILHLLGFDHELGQEEQDEMEGFEIAILEKLGIANPY 181 >gi|317471788|ref|ZP_07931126.1| hypothetical protein HMPREF1011_01475 [Anaerostipes sp. 3_2_56FAA] gi|316900714|gb|EFV22690.1| hypothetical protein HMPREF1011_01475 [Anaerostipes sp. 3_2_56FAA] Length = 165 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 17/144 (11%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 CE++ + V + Y E++L+ + I +N E RGID+PT+VLSFP Sbjct: 17 CEMIAGQVVEAAVD--YVTCPFECEVNLMLVGNEEIHRINLEQRGIDRPTDVLSFPMIEY 74 Query: 92 SSDGC---------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 + GC LMLGDIV++ + + +A G E LI H LH Sbjct: 75 ENPGCFDGLEEDPAAFHPDTGELMLGDIVISLDKAKEQAKAYGHSLEREYAFLIAHSMLH 134 Query: 137 LLGYDHVDDKDACVMEGLERSILE 160 L GYDH++D++ VME + IL+ Sbjct: 135 LFGYDHMEDEERAVMEEKQEEILQ 158 >gi|56417248|ref|YP_154322.1| hypothetical protein AM1264 [Anaplasma marginale str. St. Maries] gi|222475612|ref|YP_002564029.1| hypothetical protein AMF_953 [Anaplasma marginale str. Florida] gi|255003605|ref|ZP_05278569.1| hypothetical protein AmarPR_05268 [Anaplasma marginale str. Puerto Rico] gi|255004734|ref|ZP_05279535.1| hypothetical protein AmarV_05648 [Anaplasma marginale str. Virginia] gi|62901414|sp|Q5P9G3|RRMF_ANAMM RecName: Full=Probable rRNA maturation factor gi|254807282|sp|B9KH69|RRMF_ANAMF RecName: Full=Probable rRNA maturation factor gi|56388480|gb|AAV87067.1| hypothetical protein AM1264 [Anaplasma marginale str. St. Maries] gi|222419750|gb|ACM49773.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 154 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 4/99 (4%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRGI K TNVLSF S C LG+I L+ E I E+ + +H H+ Sbjct: 55 LNSQYRGIHKATNVLSFSYEKLSPGCC----LGEIYLSMERIAEESLEMDVAVRSHFFHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +IHG LH+LGYDH + ++A M+ LE +L LGI +PY Sbjct: 111 LIHGMLHILGYDHEEPEEAITMQALEVGLLAKLGIRNPY 149 >gi|148284177|ref|YP_001248267.1| putative metalloprotease [Orientia tsutsugamushi str. Boryong] gi|146739616|emb|CAM79399.1| putative metal-dependent hydrolase [Orientia tsutsugamushi str. Boryong] Length = 167 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 11/160 (6%) Query: 18 ENALWGD--EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 ++ +W + EI+L + +++ N+ +K V++ E+ ++ T+ H ++ LNF +R Sbjct: 10 QHPIWNNHNEINLCYVKKIIKTTLCHNVFAKLQLVQQ--AEVVILLTNDHEMQNLNFTHR 67 Query: 76 GIDKPTNVLSFPTAFASSDGCSSL-------MLGDIVLAYEIIEIEANVLGKEFENHLVH 128 I+KPTNVLSFP S+L LGDI Y I EA K F NH H Sbjct: 68 KINKPTNVLSFPDQVLDWQNLSTLDIQDNYIYLGDIAFGYNSISKEAVEQQKTFINHFTH 127 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L+IH LHLLG+DH D +A +ME LE ++L I PY Sbjct: 128 LLIHAILHLLGFDHQHDSEAIIMEELEVNLLAKFSIASPY 167 >gi|186475179|ref|YP_001856649.1| hypothetical protein Bphy_0410 [Burkholderia phymatum STM815] gi|238689444|sp|B2JD86|RRMF_BURP8 RecName: Full=Probable rRNA maturation factor gi|184191638|gb|ACC69603.1| protein of unknown function UPF0054 [Burkholderia phymatum STM815] Length = 153 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 EL++ F D+ TLN YRG D TNVL+F A+A S+ + GD++L ++E E Sbjct: 43 AELTVRFVDADEGRTLNRTYRGKDYATNVLTF--AYAESE--DDPVTGDLILCCPVVEKE 98 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 AN GK H HL++HG LH GYDH D+ +A ME +E +L LG DPYE Sbjct: 99 ANEQGKPLGAHYAHLLVHGTLHAQGYDHEDEDEAEEMEAIETEVLGKLGFPDPYE 153 >gi|329113344|ref|ZP_08242125.1| Putative metalloprotease [Acetobacter pomorum DM001] gi|326697169|gb|EGE48829.1| Putative metalloprotease [Acetobacter pomorum DM001] Length = 179 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 7/112 (6%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 ++V + LN +RG +PTNVL+F + + GDI+LA E + EA Sbjct: 72 TVVLATDREVRELNGRHRGKQRPTNVLTF-------EPPPGINGGDIILALETVVREARK 124 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK +HL HL+IHG LHL GYDH +A ME LE +L L + +P++ Sbjct: 125 AGKPVADHLAHLVIHGSLHLAGYDHHHPGEAREMEMLESRLLSRLRVPNPWK 176 >gi|58040435|ref|YP_192399.1| hypothetical protein GOX2007 [Gluconobacter oxydans 621H] gi|62901405|sp|Q5FPF3|RRMF_GLUOX RecName: Full=Probable rRNA maturation factor gi|58002849|gb|AAW61743.1| Hypothetical protein GOX2007 [Gluconobacter oxydans 621H] Length = 168 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +E+A W + E +A+ + +G S++ ++ LN + Sbjct: 12 IIIEDARWRASV---PGTERAIRRALVAVARQGGPDFTQSPAPSILLATDRIVKRLNARF 68 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R +KPTNVL+F + S + GDIVL YE + EA + HL HL++HG Sbjct: 69 RDKNKPTNVLTF-------EPLSPMHGGDIVLGYETVRREAAAARRSLRAHLSHLVVHGA 121 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL GYDH +A MEG+E L LG DP+ Sbjct: 122 LHLAGYDHHHPGEAREMEGIETRTLRSLGFGDPWR 156 >gi|254482458|ref|ZP_05095697.1| conserved hypothetical protein TIGR00043, putative [marine gamma proteobacterium HTCC2148] gi|214037149|gb|EEB77817.1| conserved hypothetical protein TIGR00043, putative [marine gamma proteobacterium HTCC2148] Length = 159 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+S+ D + LN YR PTNVLSFP+ +LGDIV+ ++ E Sbjct: 37 TEISVRLVDIEEMTKLNQGYRDKSGPTNVLSFPSDLPPEL--DLPLLGDIVICAPVVCDE 94 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 A K + H H+ +HG LHLLGYDH+++ +A ME LE IL L PY+ Sbjct: 95 AKSQQKILQAHWAHMTVHGTLHLLGYDHIEEDEALAMEALETEILTSLNYPCPYQ 149 >gi|167035831|ref|YP_001671062.1| putative metalloprotease [Pseudomonas putida GB-1] gi|189040216|sp|B0KJW3|RRMF_PSEPG RecName: Full=Probable rRNA maturation factor gi|166862319|gb|ABZ00727.1| protein of unknown function UPF0054 [Pseudomonas putida GB-1] Length = 157 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 77/144 (53%), Gaps = 13/144 (9%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 R CE+ + ++ E+++ D LN YR D TNVLSFP Sbjct: 20 FRRWCELALRQRTAD------------SEMTIRLVDEAEGRELNHTYRHKDYATNVLSFP 67 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 A D +LGD+V+ ++E EA GK E H HL++HG LHLLGYDH++D++ Sbjct: 68 -ADVPDDLLDIPLLGDLVICVAVVEREAAEQGKSLEAHWAHLVMHGCLHLLGYDHIEDEE 126 Query: 148 ACVMEGLERSILEDLGINDPYEVD 171 A MEGLER +L +LG DPY D Sbjct: 127 AEEMEGLERELLAELGHPDPYADD 150 >gi|258542172|ref|YP_003187605.1| hypothetical protein APA01_10760 [Acetobacter pasteurianus IFO 3283-01] gi|256633250|dbj|BAH99225.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256636309|dbj|BAI02278.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256639362|dbj|BAI05324.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256642418|dbj|BAI08373.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256645473|dbj|BAI11421.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256648526|dbj|BAI14467.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256651579|dbj|BAI17513.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654570|dbj|BAI20497.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 168 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 7/112 (6%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 ++V + LN +RG +PTNVL+F + + GDI+LA E + EA Sbjct: 61 TVVLATDREVRELNGRHRGKHRPTNVLTF-------EPPPGITGGDIILALETVVREARK 113 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK +HL HL+IHG LHL GYDH +A ME LE +L L + +P++ Sbjct: 114 AGKPVADHLAHLVIHGSLHLAGYDHHHPGEAREMEMLESRLLSRLRVPNPWK 165 >gi|306819834|ref|ZP_07453488.1| possible metal-dependent hydrolase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552081|gb|EFM40018.1| possible metal-dependent hydrolase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 158 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 E+SL FTD+ I +N EYR ID T+VLSFP S + LGDIV++ Sbjct: 41 EISLTFTDNENIRQINKEYRDIDDKTDVLSFPMYEIEDLEEEKKSKSKNLKPLGDIVISM 100 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E + +A G FE + +LI H HL+GYDH+ D + +M E I+ L I Sbjct: 101 EQADEQAKQFGHSFEREVCYLICHSMFHLMGYDHMTDDEKKIMREKEEKIMTKLNI 156 >gi|297539315|ref|YP_003675084.1| hypothetical protein M301_2139 [Methylotenera sp. 301] gi|297258662|gb|ADI30507.1| protein of unknown function UPF0054 [Methylotenera sp. 301] Length = 145 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 12/141 (8%) Query: 34 VVFAKAVSNLISKGYF---VKENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 V +A +++L S+ F K I E ++ D LN YRG D TNVL+FP Sbjct: 8 VQYASTLNDLPSRSQFRLWAKAAIRVDTEAAIRIVDEAEGRELNKAYRGKDYATNVLTFP 67 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 ++GDI++ ++ EA K E H HL +HG LHL GYDH + Sbjct: 68 LTEEPH------LMGDIIICAPVVAAEALAQNKPLEAHYAHLTVHGILHLHGYDHEVEAQ 121 Query: 148 ACVMEGLERSILEDLGINDPY 168 A +ME LE +I+ LG +PY Sbjct: 122 AELMESLETAIITKLGYANPY 142 >gi|323342100|ref|ZP_08082333.1| metal-dependent hydrolase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464525|gb|EFY09718.1| metal-dependent hydrolase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 147 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 67/115 (58%), Gaps = 3/115 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 +N VE+++V D I N E+R ID+PT+VLSF S +G M+GDI+++ + I Sbjct: 35 KNPVEVNVVLVDDPSIHNFNKEFRDIDRPTDVLSFEDG--SMEG-EVFMMGDIIISVDAI 91 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 +A G + L+ HG+LHLLGYDH ++ VM GL++ IL D+ D Sbjct: 92 RRQAEEYGHSIKREFCFLVAHGYLHLLGYDHHTPEEEVVMFGLQKEILHDIARKD 146 >gi|238019234|ref|ZP_04599660.1| hypothetical protein VEIDISOL_01098 [Veillonella dispar ATCC 17748] gi|237863933|gb|EEP65223.1| hypothetical protein VEIDISOL_01098 [Veillonella dispar ATCC 17748] Length = 158 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 9/131 (6%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 + V + +S+ Y ++E+ E+S++ D+ +I LN EYRGID+PT+VLSF A D Sbjct: 22 RKVCDEVSRVYGLEED--EMSILLCDNAKIHELNKEYRGIDRPTDVLSF--ALNEGDDYE 77 Query: 98 SL-----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGD++++ E +A G FE L +L H LH+LGYDH++D+D M Sbjct: 78 GSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKEMR 137 Query: 153 GLERSILEDLG 163 E IL +LG Sbjct: 138 TEEEFILGNLG 148 >gi|68171524|ref|ZP_00544904.1| Protein of unknown function UPF0054 [Ehrlichia chaffeensis str. Sapulpa] gi|88658303|ref|YP_507939.1| hypothetical protein ECH_1155 [Ehrlichia chaffeensis str. Arkansas] gi|123492551|sp|Q2GF44|RRMF_EHRCR RecName: Full=Probable rRNA maturation factor gi|67999052|gb|EAM85723.1| Protein of unknown function UPF0054 [Ehrlichia chaffeensis str. Sapulpa] gi|88599760|gb|ABD45229.1| conserved hypothetical protein TIGR00043 [Ehrlichia chaffeensis str. Arkansas] Length = 154 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 4/112 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+V ++ ++ LN+EYR +KPTNVLSFP + C LG+I ++ + + E+ Sbjct: 42 ISVVLANNRLLQKLNYEYRKKNKPTNVLSFPYN-KLNKYC---YLGEIFVSLDTLINEST 97 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L E+H H++IHG LH+L Y+H + + +ME +E +L+ LGI +PY Sbjct: 98 DLNIPIEHHTSHMLIHGLLHILDYNHEEPLEQYIMESIEIKLLDKLGIKNPY 149 >gi|313893245|ref|ZP_07826820.1| translation metalloprotein YbeY [Veillonella sp. oral taxon 158 str. F0412] gi|313442141|gb|EFR60558.1| translation metalloprotein YbeY [Veillonella sp. oral taxon 158 str. F0412] Length = 158 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 9/131 (6%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 + V + +S+ Y ++E+ E+S++ D+ +I LN EYRGID+PT+VLSF A D Sbjct: 22 RKVCDEVSRVYGLEED--EMSILLCDNAKIHELNKEYRGIDRPTDVLSF--ALNEGDDYE 77 Query: 98 SL-----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGD++++ E +A G FE L +L H LH+LGYDH++D+D M Sbjct: 78 GSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKEMR 137 Query: 153 GLERSILEDLG 163 E IL +LG Sbjct: 138 TEEEFILGNLG 148 >gi|296112099|ref|YP_003622481.1| hypothetical protein LKI_09865 [Leuconostoc kimchii IMSNU 11154] gi|295833631|gb|ADG41512.1| hypothetical protein LKI_09865 [Leuconostoc kimchii IMSNU 11154] Length = 160 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 16/132 (12%) Query: 47 GYFVK-ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------------PTAFASS 93 G F+K + E+S+ F ++ I+ N +YRG+DKPT+V+SF P ++ Sbjct: 29 GTFLKLPDNTEMSVTFVNNDEIQQYNRQYRGVDKPTDVISFAIEEGEDDFDILPDQEWAN 88 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVME 152 D ++ GDI+++ ++I +A LG +E L L++HGFLHL GYDH+ D + M Sbjct: 89 DIAKNI--GDILVSVDVIASQATYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMF 146 Query: 153 GLERSILEDLGI 164 L+R IL+D G+ Sbjct: 147 DLQRKILDDYGL 158 >gi|209517502|ref|ZP_03266342.1| protein of unknown function UPF0054 [Burkholderia sp. H160] gi|209502035|gb|EEA02051.1| protein of unknown function UPF0054 [Burkholderia sp. H160] Length = 153 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 4/114 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ F D+ TLN YRG D TNVL+F A+A S+ + GD++L ++E EA Sbjct: 44 ELTIRFVDAEEGRTLNRTYRGKDYATNVLTF--AYAESE--DDPVTGDLILCCPVVEQEA 99 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK H HL++HG LH GYDH +++A ME LE IL+ LG DPY+ Sbjct: 100 AEQGKPLAAHYAHLLVHGTLHAQGYDHEVEEEAEEMEALETEILDKLGFPDPYQ 153 >gi|238924118|ref|YP_002937634.1| hypothetical protein EUBREC_1756 [Eubacterium rectale ATCC 33656] gi|259646480|sp|C4ZA59|RRMF_EUBR3 RecName: Full=Probable rRNA maturation factor gi|238875793|gb|ACR75500.1| hypothetical protein EUBREC_1756 [Eubacterium rectale ATCC 33656] Length = 165 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 16/126 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E++L TD+ I +N EYR ID+PT+VLSFP + G Sbjct: 38 AEVNLTLTDNEGIHAINKEYRQIDRPTDVLSFPMLSYETPGDFSFLSDENEDDFNPDTGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +MLGDI+++ + ++ +A G + LI H LHL GYDH++ +A VME +R I Sbjct: 98 VMLGDIIISVDKVKEQAVEYGHSEKREFAFLITHSMLHLFGYDHMEADEAAVMEEHQRKI 157 Query: 159 LEDLGI 164 L+ LGI Sbjct: 158 LDALGI 163 >gi|296504797|ref|YP_003666497.1| putative metalloprotease [Bacillus thuringiensis BMB171] gi|296325849|gb|ADH08777.1| putative metalloprotease [Bacillus thuringiensis BMB171] Length = 156 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 13/147 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E ++ +CEV+ A I G E+S+ F D+ RI +N +YR D+PT+V+ Sbjct: 16 EEYMSLICEVLEKAAQMENIEDG-------AEVSVTFVDNERIREINRDYRDKDQPTDVI 68 Query: 85 SFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 SF MLGD++++ + +A G F+ L L +HGFLHLL Sbjct: 69 SFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFLHLL 128 Query: 139 GYDHVDDKDACVMEGLERSILEDLGIN 165 GYDH+ ++D M G ++ ILE G+ Sbjct: 129 GYDHMTEEDEKEMFGRQKEILEAFGLG 155 >gi|150015729|ref|YP_001307983.1| metalloprotease [Clostridium beijerinckii NCIMB 8052] gi|189040615|sp|A6LRP7|RRMF_CLOB8 RecName: Full=Probable rRNA maturation factor gi|149902194|gb|ABR33027.1| protein of unknown function UPF0054 [Clostridium beijerinckii NCIMB 8052] Length = 167 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 17/126 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSD-GCSS 98 E+SL+F D++ I+ +N E RGI++ T+VLSFP F+ SD Sbjct: 39 EISLLFVDNNEIKEINNETRGINRETDVLSFPMLEYEDKKVFKDMYKDYKFSQSDFDGDE 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDIVL+ E ++ +E +L++H LHLLGYDH++D D +M E I Sbjct: 99 LVLGDIVLSLEKALEQSKEFNHSYEREASYLVVHSVLHLLGYDHMEDDDKIIMRSREEDI 158 Query: 159 LEDLGI 164 L L I Sbjct: 159 LNKLNI 164 >gi|311108331|ref|YP_003981184.1| metalloprotein, YbeY family protein [Achromobacter xylosoxidans A8] gi|310763020|gb|ADP18469.1| metalloprotein, YbeY family protein [Achromobacter xylosoxidans A8] Length = 157 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/121 (39%), Positives = 61/121 (50%), Gaps = 14/121 (11%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-----PTAFASSDGCSSLMLGDIVLA 107 + ELSL + LN ++RG D TNVL+F P A GDIV+ Sbjct: 43 SAAELSLRLVGAAEGRRLNRDFRGRDYATNVLTFEYGVDPLGVAR---------GDIVMC 93 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 ++ EA K +H HL IHG LH LGYDH+ +DA ME LE + L D+ I DP Sbjct: 94 VPVLVREAREQRKALLDHAAHLTIHGVLHALGYDHIKARDAKRMEALETATLADMRIADP 153 Query: 168 Y 168 Y Sbjct: 154 Y 154 >gi|300088389|ref|YP_003758911.1| hypothetical protein Dehly_1299 [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528122|gb|ADJ26590.1| protein of unknown function UPF0054 [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 161 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 12/120 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------------SLMLGD 103 E+ + T ++ LN YRG DKPT+VLSF + G + SL LG+ Sbjct: 38 EMGIYITGQEKMRELNRVYRGKDKPTDVLSFSFYVKEASGSAETDVEFPVPEDGSLHLGE 97 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +V++ E++A LG + L L+IHG +HLLG+DH D DA +ME E IL+ L Sbjct: 98 LVISLPQAELQAAELGHSVKTELARLLIHGVMHLLGFDHEKDADAEIMEARELEILKQLA 157 >gi|238028584|ref|YP_002912815.1| unkown domain/putative metalloprotease fusion protein [Burkholderia glumae BGR1] gi|237877778|gb|ACR30111.1| Hypothetical protein bglu_1g30480 [Burkholderia glumae BGR1] Length = 272 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 10/150 (6%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 +GDEI + K ++ +S +L++ F LN YR D PT Sbjct: 131 YGDEITTAQRKTLPKRKLIAEWLSTSLSAD---AQLTVRFVGEQEGRELNRGYRKKDYPT 187 Query: 82 NVLSFPTAF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 NVL+F A+ A+ DG + +GD+V+ ++E EA K H HL++HG LH GY Sbjct: 188 NVLTF--AYDAAPDGTT---IGDLVICCPVVEKEAAEQDKPLLAHYAHLLVHGALHAQGY 242 Query: 141 DH-VDDKDACVMEGLERSILEDLGINDPYE 169 DH ++DA ME LE IL LG +PY+ Sbjct: 243 DHERSEEDAAEMEALETDILAKLGFPNPYQ 272 >gi|57239608|ref|YP_180744.1| hypothetical protein Erum8820 [Ehrlichia ruminantium str. Welgevonden] gi|58579597|ref|YP_197809.1| hypothetical protein ERWE_CDS_09330 [Ehrlichia ruminantium str. Welgevonden] gi|62901161|sp|Q5HA01|RRMF_EHRRW RecName: Full=Probable rRNA maturation factor gi|57161687|emb|CAH58617.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58418223|emb|CAI27427.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 157 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 8/136 (5%) Query: 35 VFAKAV--SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 +F K V S+LI+ + + I+ S+V ++ ++ LN+EYR +KPTNVLSFP Sbjct: 20 IFVKNVIKSSLINLNIYEYKPII--SIVLANNILLQKLNYEYRNKNKPTNVLSFPYD-KL 76 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + C+ LG+I L+ + + E+ L E+H H++IHG LH+L Y+H + +ME Sbjct: 77 NKKCN---LGEIFLSLDTLIQESIDLNIPIEHHTCHMLIHGLLHILDYNHEEPLMQYIME 133 Query: 153 GLERSILEDLGINDPY 168 +E +L+ LGI +PY Sbjct: 134 SIEIKLLDKLGIRNPY 149 >gi|218288622|ref|ZP_03492899.1| protein of unknown function UPF0054 [Alicyclobacillus acidocaldarius LAA1] gi|218241279|gb|EED08454.1| protein of unknown function UPF0054 [Alicyclobacillus acidocaldarius LAA1] Length = 157 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 13/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ VE L + E V A + +G E+S++F + I L Sbjct: 6 IDVTCEVEWPLTPPHGDAQAFVERVLEAAAERIGVRG--------EVSVLFVNDDAIHEL 57 Query: 71 NFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 N YR +D+PT+VLSFP A D MLGDIV++ + +A G E + Sbjct: 58 NRTYRQVDRPTDVLSFPMNEGEELADPDEVDP-MLGDIVVSVDRAREQAEAYGHSLEREV 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L++HGFLHL GYDH D+ M GL+ IL+ +G++ Sbjct: 117 AFLLVHGFLHLNGYDHEDEAGEREMFGLQEEILQGIGLS 155 >gi|170025228|ref|YP_001721733.1| putative metalloprotease [Yersinia pseudotuberculosis YPIII] gi|238688388|sp|B1JG97|RRMF_YERPY RecName: Full=Probable rRNA maturation factor gi|169751762|gb|ACA69280.1| protein of unknown function UPF0054 [Yersinia pseudotuberculosis YPIII] Length = 157 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 2/117 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E+++ D LN YRG DK TNVLSFP F + +LGD+++ +++ Sbjct: 36 QPVSEVTIRLVDEAESHDLNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVV 93 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E EA K H H+++HG LHLLGYDH+DD +A ME +E I+ LG DPY Sbjct: 94 EKEAIEQEKALLAHWAHMVVHGSLHLLGYDHIDDDEAEEMELIEIEIMHGLGYPDPY 150 >gi|291524855|emb|CBK90442.1| conserved hypothetical protein TIGR00043 [Eubacterium rectale DSM 17629] gi|291528996|emb|CBK94582.1| conserved hypothetical protein TIGR00043 [Eubacterium rectale M104/1] Length = 165 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 16/126 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E++L TD+ I +N EYR ID+PT+VLSFP + G Sbjct: 38 AEVNLTLTDNEGIHAINKEYRQIDRPTDVLSFPMLSYETPGDFSFISDENEDDFNPDTGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +MLGDI+++ + ++ +A G + LI H LHL GYDH++ +A VME +R I Sbjct: 98 VMLGDIIISVDKVKEQALEYGHSEKREFAFLITHSMLHLFGYDHMEADEAAVMEEHQRKI 157 Query: 159 LEDLGI 164 L+ LGI Sbjct: 158 LDALGI 163 >gi|163857969|ref|YP_001632267.1| putative metalloprotease [Bordetella petrii DSM 12804] gi|226701660|sp|A9I000|RRMF_BORPD RecName: Full=Probable rRNA maturation factor gi|163261697|emb|CAP43999.1| conserved hypothetical protein [Bordetella petrii] Length = 155 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 59/114 (51%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELSL LN YR D TNVL+F +D + GDIV+ ++ E Sbjct: 45 AELSLRLVGQAEGRRLNHAYRERDYATNVLTFEY---GTDPLGTAR-GDIVICVPVLARE 100 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK +H HL +HG LH LGYDH+ +DA ME LE +IL + I DPY Sbjct: 101 AREQGKTLLDHAAHLTVHGVLHALGYDHIKARDARRMEALETAILTGMRIADPY 154 >gi|330718563|ref|ZP_08313163.1| metal-dependent hydrolase [Leuconostoc fallax KCTC 3537] Length = 160 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 12/130 (9%) Query: 47 GYFVK-ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TAFASSDGCS 97 G+++K E+S+ F ++ I N +YRG+DKPT+V+SF + Sbjct: 29 GHYLKLPEDTEMSVTFMNNDAIHEYNKQYRGVDKPTDVISFAIEEDGDDLPVLPDEEMAE 88 Query: 98 SLM--LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD-KDACVMEGL 154 +L +GDI+++ +I++ +A+ LG FE L L++HGFLHL GYDH+D+ M L Sbjct: 89 TLAKNIGDILVSIDIVDTQADYLGHSFERELGFLVVHGFLHLNGYDHMDEGPQEKEMFEL 148 Query: 155 ERSILEDLGI 164 +R IL+D G+ Sbjct: 149 QRKILDDYGL 158 >gi|229163248|ref|ZP_04291203.1| metalloprotease [Bacillus cereus R309803] gi|228620311|gb|EEK77182.1| metalloprotease [Bacillus cereus R309803] Length = 143 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 142 >gi|229031951|ref|ZP_04187938.1| metalloprotease [Bacillus cereus AH1271] gi|229174977|ref|ZP_04302497.1| metalloprotease [Bacillus cereus MM3] gi|228608645|gb|EEK65947.1| metalloprotease [Bacillus cereus MM3] gi|228729415|gb|EEL80405.1| metalloprotease [Bacillus cereus AH1271] Length = 143 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 23 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 142 >gi|332975865|gb|EGK12743.1| metal-dependent hydrolase [Desmospora sp. 8437] Length = 157 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 6/116 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-----AFASSDGCSSLMLGDIVLAYE 109 E+++ D I LN EYR +D+PT+VLSFP + S +G L LGDIV++ Sbjct: 40 AEVAVTIVDDEEIHRLNREYRQVDRPTDVLSFPQWEPGEEWGSPEG-EPLPLGDIVISLP 98 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G E L L +HGFLHLLGYDH D++ M + +IL +G+ Sbjct: 99 RAREQAAQYGHSLERELGFLAVHGFLHLLGYDHGTDEEEEEMFSRQEAILSRVGLT 154 >gi|228916935|ref|ZP_04080497.1| metalloprotease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842759|gb|EEM87845.1| metalloprotease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 143 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKGILEAFGLG 142 >gi|303231491|ref|ZP_07318221.1| translation metalloprotein YbeY [Veillonella atypica ACS-049-V-Sch6] gi|302513834|gb|EFL55846.1| translation metalloprotein YbeY [Veillonella atypica ACS-049-V-Sch6] Length = 158 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 77/139 (55%), Gaps = 12/139 (8%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 + V + +S+ Y ++ + ELS++ D+ +I LN EYRGID+PT+VLSF A D Sbjct: 22 QKVCDEVSRVYGLEND--ELSILLCDNKKIHELNKEYRGIDRPTDVLSF--ALNEGDDYE 77 Query: 98 SL-----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGD++L+ E +A G FE L +L H LH+LGYDH+ D+D M Sbjct: 78 GSEEEHHLLGDMILSLERAHEQAVEYGHSFERELAYLTTHSCLHILGYDHMTDEDKKEMR 137 Query: 153 GLERSILEDLGI---NDPY 168 E +L +LG + PY Sbjct: 138 TEEEFVLSNLGYVREDQPY 156 >gi|294341620|emb|CAZ90037.1| putative metal-dependent hydrolase [Thiomonas sp. 3As] Length = 175 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 9/134 (6%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 V +++ L G + + + L V D R LN YRG D PTNVL+F D Sbjct: 42 VGPESLDALPQAGALSEAHQITLRFVAADEGR--ALNRAYRGKDYPTNVLTF-------D 92 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 + DIVL ++ EA K H HL+IHG LH G+DH +++A ME Sbjct: 93 YNHWPVQADIVLCCPVVAGEALAQHKPLGAHYAHLVIHGLLHAQGWDHQTEREAQKMERQ 152 Query: 155 ERSILEDLGINDPY 168 E ++L+ GI+DPY Sbjct: 153 EVTVLQRFGISDPY 166 >gi|331001260|ref|ZP_08324886.1| translation metalloprotein YbeY [Parasutterella excrementihominis YIT 11859] gi|329568987|gb|EGG50783.1| translation metalloprotein YbeY [Parasutterella excrementihominis YIT 11859] Length = 156 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 EN ++++ F + LN YR D TNVL+F ++ D+V+ ++ Sbjct: 35 ENDAQITVRFVEEEEGRELNKTYRSKDYATNVLTFDYQI------EPVVEADLVICVPVL 88 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E E+ K E H+ HL++HG LH GYDH+DD++A VME E +L DLG + PY Sbjct: 89 EKESKDQNKTLEEHMAHLLVHGTLHAQGYDHMDDEEAEVMEQRETDVLVDLGFDVPY 145 >gi|303256204|ref|ZP_07342220.1| putative metalloprotease [Burkholderiales bacterium 1_1_47] gi|302860933|gb|EFL84008.1| putative metalloprotease [Burkholderiales bacterium 1_1_47] Length = 156 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 EN ++++ F + LN YR D TNVL+F ++ D+V+ ++ Sbjct: 35 ENDAQITVRFVEEEEGRELNKTYRSKDYATNVLTFDYQI------EPVVEADLVICVPVL 88 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E E+ K E H+ HL++HG LH GYDH+DD++A VME E +L DLG + PY Sbjct: 89 EKESKDQNKTLEEHMAHLLVHGTLHAQGYDHMDDEEAEVMEQRETDVLVDLGFDVPY 145 >gi|228929346|ref|ZP_04092371.1| metalloprotease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935623|ref|ZP_04098438.1| metalloprotease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948016|ref|ZP_04110302.1| metalloprotease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987553|ref|ZP_04147672.1| metalloprotease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093372|ref|ZP_04224479.1| metalloprotease [Bacillus cereus Rock3-42] gi|229123841|ref|ZP_04253035.1| metalloprotease [Bacillus cereus 95/8201] gi|229141040|ref|ZP_04269583.1| metalloprotease [Bacillus cereus BDRD-ST26] gi|229157917|ref|ZP_04285991.1| metalloprotease [Bacillus cereus ATCC 4342] gi|229186542|ref|ZP_04313704.1| metalloprotease [Bacillus cereus BGSC 6E1] gi|229198429|ref|ZP_04325135.1| metalloprotease [Bacillus cereus m1293] gi|228585129|gb|EEK43241.1| metalloprotease [Bacillus cereus m1293] gi|228596973|gb|EEK54631.1| metalloprotease [Bacillus cereus BGSC 6E1] gi|228625576|gb|EEK82329.1| metalloprotease [Bacillus cereus ATCC 4342] gi|228642473|gb|EEK98761.1| metalloprotease [Bacillus cereus BDRD-ST26] gi|228659662|gb|EEL15308.1| metalloprotease [Bacillus cereus 95/8201] gi|228690028|gb|EEL43829.1| metalloprotease [Bacillus cereus Rock3-42] gi|228772285|gb|EEM20732.1| metalloprotease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811706|gb|EEM58041.1| metalloprotease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824063|gb|EEM69880.1| metalloprotease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830360|gb|EEM75972.1| metalloprotease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 143 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 142 >gi|82703810|ref|YP_413376.1| hypothetical protein Nmul_A2697 [Nitrosospira multiformis ATCC 25196] gi|123543797|sp|Q2Y5I7|RRMF_NITMU RecName: Full=Probable rRNA maturation factor gi|82411875|gb|ABB75984.1| Protein of unknown function UPF0054 [Nitrosospira multiformis ATCC 25196] Length = 189 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--------PTAFASSDGCSSLMLGDIVL 106 E++L D LN ++R D TNVL+F P + + + GDIVL Sbjct: 56 AEIALRIVDEEEGHRLNRDFRNKDYATNVLTFVYRDGQIHPDSPLGEKRGAYPLTGDIVL 115 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 ++E EA K+ H HL +HG LHL GYDH +D+DA ME E IL LG D Sbjct: 116 CAPVVENEAGQQQKDLMAHYAHLTVHGVLHLQGYDHQEDEDAKNMEETETRILAWLGYED 175 Query: 167 PY 168 PY Sbjct: 176 PY 177 >gi|260890435|ref|ZP_05901698.1| putative metalloprotease [Leptotrichia hofstadii F0254] gi|260860055|gb|EEX74555.1| putative metalloprotease [Leptotrichia hofstadii F0254] Length = 157 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 67/104 (64%), Gaps = 3/104 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEA 115 LSL+ T + +I+ +N EYR D PT+V+SF A+ ++ ++ MLGDIV++ E ++ ++ Sbjct: 49 LSLLITTNAQIQEINHEYRQKDTPTDVISF--AYNETENFGAMNMLGDIVISIERVKEQS 106 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + G E +++ HG LHLLGYDH+++KD VM E IL Sbjct: 107 SEYGHSDEREFYYVLCHGMLHLLGYDHIEEKDKVVMRRREEEIL 150 >gi|228923055|ref|ZP_04086348.1| metalloprotease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836688|gb|EEM82036.1| metalloprotease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 154 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ VE+S+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 34 EDGVEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 94 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 153 >gi|88811724|ref|ZP_01126978.1| hypothetical protein NB231_04945 [Nitrococcus mobilis Nb-231] gi|88791115|gb|EAR22228.1| hypothetical protein NB231_04945 [Nitrococcus mobilis Nb-231] Length = 154 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 2/113 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D LN YRG D TN+L+FP +G +++LGD+V+ ++ EA Sbjct: 37 EIAIRIVDEEEGRELNAIYRGYDYATNILAFPAEL--PEGVEAVLLGDLVICAPLVAREA 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + K H HL++HG LHLLGYDH ++ A VME ER IL LG DPY Sbjct: 95 DEQDKRLAAHWAHLVVHGVLHLLGYDHEEEAAAAVMEAQERVILAKLGYPDPY 147 >gi|229543817|ref|ZP_04432876.1| protein of unknown function UPF0054 [Bacillus coagulans 36D1] gi|229324956|gb|EEN90632.1| protein of unknown function UPF0054 [Bacillus coagulans 36D1] Length = 156 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLMLGDIV 105 E+ ELS+ FTD+ I +N +YRG D+PT+V+SF + +LGDI+ Sbjct: 36 EDGTELSVTFTDNEGIREINRDYRGKDQPTDVISFALEEMGEGEIEITGAEIPRVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ +A G FE L L +HGFLHLLGYDH+ +D M G + IL+ G+ Sbjct: 96 ISVPRAREQAEEYGHSFERELGFLAVHGFLHLLGYDHMTKEDETEMFGRQNEILDRYGLK 155 >gi|33600341|ref|NP_887901.1| putative metalloprotease [Bordetella bronchiseptica RB50] gi|46577415|sp|Q7WMN5|RRMF_BORBR RecName: Full=Probable rRNA maturation factor gi|145559541|sp|Q7VZ88|RRMF_BORPE RecName: Full=Probable rRNA maturation factor gi|33567940|emb|CAE31853.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 157 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL L LN E+RG D TNVL+F G + GDIV+ ++ EA Sbjct: 46 ELGLRLVGLAEGRRLNREFRGRDYATNVLTFE----YGTGPDGVARGDIVVCVPVLAREA 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H HL +HG LH LGYDH+ +A ME LE ++L +GI DPY Sbjct: 102 REQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPY 154 >gi|42783429|ref|NP_980676.1| putative metalloprotease [Bacillus cereus ATCC 10987] gi|59799126|sp|Q730N3|RRMF_BACC1 RecName: Full=Probable rRNA maturation factor gi|42739358|gb|AAS43284.1| conserved hypothetical protein TIGR00043 [Bacillus cereus ATCC 10987] Length = 156 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 36 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 155 >gi|152976733|ref|YP_001376250.1| putative metalloprotease [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189039807|sp|A7GSZ7|RRMF_BACCN RecName: Full=Probable rRNA maturation factor gi|152025485|gb|ABS23255.1| protein of unknown function UPF0054 [Bacillus cytotoxicus NVH 391-98] Length = 156 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIV 105 E+ ELS+ F D+ RI +N +YRG D+PT+V+SF + MLGD++ Sbjct: 36 EDGTELSVTFVDNERIREINRDYRGKDQPTDVISFALEDMGEGEVEIIGADMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ IL G+ Sbjct: 96 ISIPRTKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGKQKEILGAFGLR 155 >gi|282850279|ref|ZP_06259658.1| metalloprotein, YbeY/ UPF0054 family [Veillonella parvula ATCC 17745] gi|282579772|gb|EFB85176.1| metalloprotein, YbeY/ UPF0054 family [Veillonella parvula ATCC 17745] Length = 158 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 9/131 (6%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 + V + +S+ Y ++E+ E+S++ D+ +I LN EYRGID+PT+VLSF A D Sbjct: 22 RKVCDEVSRVYGLEED--EMSILLCDNAKIHKLNKEYRGIDRPTDVLSF--ALNEGDDYE 77 Query: 98 SL-----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGD++++ E +A G FE L +L H LH+LGYDH++D+D M Sbjct: 78 GSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKEMR 137 Query: 153 GLERSILEDLG 163 E IL +LG Sbjct: 138 IEEEFILGNLG 148 >gi|331084774|ref|ZP_08333862.1| hypothetical protein HMPREF0987_00165 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410868|gb|EGG90290.1| hypothetical protein HMPREF0987_00165 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 164 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 73/151 (48%), Gaps = 21/151 (13%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L E V A+AV Y E++L+ T + I +N E+R ID+ T+VLSFP Sbjct: 18 RKLAEKVIAEAVD------YEQCPYETEVNLLLTMNEEIREMNREFREIDRATDVLSFPM 71 Query: 89 AFASSDG---------------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + G LMLGDIV++ E + +A G E L+ H Sbjct: 72 VDYGTPGDFEFLEEDDSYFHPESGELMLGDIVISKEKVTAQAEEYGHTEEREFAFLVAHS 131 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHL GYDH+++ + VME +R ILE L I Sbjct: 132 MLHLFGYDHMEEDERAVMEQKQREILERLNI 162 >gi|58617651|ref|YP_196850.1| hypothetical protein ERGA_CDS_09240 [Ehrlichia ruminantium str. Gardel] gi|62901147|sp|Q5FGP9|RRMF_EHRRG RecName: Full=Probable rRNA maturation factor gi|58417263|emb|CAI28376.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 157 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 8/136 (5%) Query: 35 VFAKAV--SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 +F K V S+LI+ + + I+ S+V ++ ++ LN+EYR +KPTNVLSFP Sbjct: 20 IFVKNVIKSSLINLNIYEYKPII--SIVLANNILLQKLNYEYRNKNKPTNVLSFPYD-KL 76 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + C+ LG+I L+ + + E+ L E+H H++IHG LH+L Y+H + +ME Sbjct: 77 NKKCN---LGEIFLSLDTLIEESIDLNIPIEHHTCHMLIHGLLHILDYNHEEPLMQYIME 133 Query: 153 GLERSILEDLGINDPY 168 +E +L+ LGI +PY Sbjct: 134 SIEIKLLDKLGIRNPY 149 >gi|33592182|ref|NP_879826.1| putative metalloprotease [Bordetella pertussis Tohama I] gi|33571827|emb|CAE41339.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332381599|gb|AEE66446.1| putative metalloprotease [Bordetella pertussis CS] Length = 149 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL L LN E+RG D TNVL+F G + GDIV+ ++ EA Sbjct: 38 ELGLRLVGLAEGRRLNREFRGRDYATNVLTFE----YGTGPDGVARGDIVVCVPVLAREA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H HL +HG LH LGYDH+ +A ME LE ++L +GI DPY Sbjct: 94 REQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPY 146 >gi|47567867|ref|ZP_00238575.1| conserved hypothetical protein protein TIGR00043 [Bacillus cereus G9241] gi|47555544|gb|EAL13887.1| conserved hypothetical protein protein TIGR00043 [Bacillus cereus G9241] Length = 156 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 155 >gi|291538974|emb|CBL12085.1| conserved hypothetical protein TIGR00043 [Roseburia intestinalis XB6B4] Length = 169 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 16/126 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E++L TD+ I +N EYR ID PT+VLSFP S G Sbjct: 42 AEINLTLTDNDGIHAINKEYRDIDAPTDVLSFPMLSYESAGDFSKLEDNYDDNFNPDTGE 101 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +MLGDI+++ + ++ +A G + LI+H LHL GYDH+ ++A +MEG + I Sbjct: 102 IMLGDIIISVDKVKEQAKSYGHSEKREYAFLILHSMLHLFGYDHMTPEEAAIMEGKQTEI 161 Query: 159 LEDLGI 164 L ++ I Sbjct: 162 LNEMNI 167 >gi|262377255|ref|ZP_06070479.1| metal-dependent hydrolase [Acinetobacter lwoffii SH145] gi|262307708|gb|EEY88847.1| metal-dependent hydrolase [Acinetobacter lwoffii SH145] Length = 160 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 3/116 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEI 113 E+ + D+ LN EYR DKPTNVLSFP+ + + +GD+V+ ++ Sbjct: 41 EIGIACVDNDESHKLNLEYRDKDKPTNVLSFPSELPDEMAQFLDAFPIGDLVICIPVVLR 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 EA+ GK H H+++HG LHL+GYDH D+DA ME +E IL LG +PY Sbjct: 101 EASEQGKAPLTHFTHMLVHGTLHLMGYDHETSDEDAEEMESIEIEILAKLGFENPY 156 >gi|30264373|ref|NP_846750.1| putative metalloprotease [Bacillus anthracis str. Ames] gi|47529824|ref|YP_021173.1| putative metalloprotease [Bacillus anthracis str. 'Ames Ancestor'] gi|49187198|ref|YP_030450.1| putative metalloprotease [Bacillus anthracis str. Sterne] gi|49478831|ref|YP_038358.1| putative metalloprotease [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141201|ref|YP_085629.1| putative metalloprotease [Bacillus cereus E33L] gi|118479472|ref|YP_896623.1| putative metalloprotease [Bacillus thuringiensis str. Al Hakam] gi|165872063|ref|ZP_02216703.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0488] gi|167634675|ref|ZP_02392995.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0442] gi|167638548|ref|ZP_02396824.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0193] gi|170687424|ref|ZP_02878641.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0465] gi|170707368|ref|ZP_02897822.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0389] gi|177653283|ref|ZP_02935535.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0174] gi|190566886|ref|ZP_03019802.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis Tsiankovskii-I] gi|196034368|ref|ZP_03101777.1| conserved hypothetical protein TIGR00043 [Bacillus cereus W] gi|196039279|ref|ZP_03106585.1| conserved hypothetical protein TIGR00043 [Bacillus cereus NVH0597-99] gi|196046290|ref|ZP_03113516.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB108] gi|206978415|ref|ZP_03239284.1| conserved hypothetical protein TIGR00043 [Bacillus cereus H3081.97] gi|217961793|ref|YP_002340363.1| putative metalloprotease [Bacillus cereus AH187] gi|218905440|ref|YP_002453274.1| conserved hypothetical protein TIGR00043 [Bacillus cereus AH820] gi|222097748|ref|YP_002531805.1| metalloprotease [Bacillus cereus Q1] gi|225866284|ref|YP_002751662.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB102] gi|227817079|ref|YP_002817088.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. CDC 684] gi|229601436|ref|YP_002868592.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0248] gi|254684060|ref|ZP_05147920.1| putative metalloprotease [Bacillus anthracis str. CNEVA-9066] gi|254721894|ref|ZP_05183683.1| putative metalloprotease [Bacillus anthracis str. A1055] gi|254736408|ref|ZP_05194114.1| putative metalloprotease [Bacillus anthracis str. Western North America USA6153] gi|254741446|ref|ZP_05199133.1| putative metalloprotease [Bacillus anthracis str. Kruger B] gi|254750884|ref|ZP_05202923.1| putative metalloprotease [Bacillus anthracis str. Vollum] gi|254757788|ref|ZP_05209815.1| putative metalloprotease [Bacillus anthracis str. Australia 94] gi|301055795|ref|YP_003794006.1| hypothetical protein BACI_c42720 [Bacillus anthracis CI] gi|33301868|sp|Q81LT4|RRMF_BACAN RecName: Full=Probable rRNA maturation factor gi|59799092|sp|Q634N8|RRMF_BACCZ RecName: Full=Probable rRNA maturation factor gi|59799112|sp|Q6HDL8|RRMF_BACHK RecName: Full=Probable rRNA maturation factor gi|145558821|sp|A0RIS3|RRMF_BACAH RecName: Full=Probable rRNA maturation factor gi|226706167|sp|B7JN28|RRMF_BACC0 RecName: Full=Probable rRNA maturation factor gi|226706184|sp|B7HPK2|RRMF_BACC7 RecName: Full=Probable rRNA maturation factor gi|254803861|sp|B9IY70|RRMF_BACCQ RecName: Full=Probable rRNA maturation factor gi|254803907|sp|C1ESJ7|RRMF_BACC3 RecName: Full=Probable rRNA maturation factor gi|254803928|sp|C3P8K9|RRMF_BACAA RecName: Full=Probable rRNA maturation factor gi|254803930|sp|C3L5Q6|RRMF_BACAC RecName: Full=Probable rRNA maturation factor gi|30259031|gb|AAP28236.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. Ames] gi|47504972|gb|AAT33648.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. 'Ames Ancestor'] gi|49181125|gb|AAT56501.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. Sterne] gi|49330387|gb|AAT61033.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974670|gb|AAU16220.1| conserved hypothetical protein [Bacillus cereus E33L] gi|118418697|gb|ABK87116.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|164712194|gb|EDR17731.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0488] gi|167513396|gb|EDR88766.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0193] gi|167530127|gb|EDR92862.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0442] gi|170127612|gb|EDS96485.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0389] gi|170668619|gb|EDT19365.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0465] gi|172081565|gb|EDT66637.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0174] gi|190561877|gb|EDV15846.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis Tsiankovskii-I] gi|195992910|gb|EDX56869.1| conserved hypothetical protein TIGR00043 [Bacillus cereus W] gi|196022760|gb|EDX61441.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB108] gi|196029906|gb|EDX68507.1| conserved hypothetical protein TIGR00043 [Bacillus cereus NVH0597-99] gi|206743371|gb|EDZ54809.1| conserved hypothetical protein TIGR00043 [Bacillus cereus H3081.97] gi|217066303|gb|ACJ80553.1| conserved hypothetical protein TIGR00043 [Bacillus cereus AH187] gi|218537495|gb|ACK89893.1| conserved hypothetical protein TIGR00043 [Bacillus cereus AH820] gi|221241806|gb|ACM14516.1| Predicted metal-dependent hydrolase [Bacillus cereus Q1] gi|225787544|gb|ACO27761.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB102] gi|227007063|gb|ACP16806.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. CDC 684] gi|229265844|gb|ACQ47481.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0248] gi|300377964|gb|ADK06868.1| protein of unknown function UPF0054 [Bacillus cereus biovar anthracis str. CI] gi|324328207|gb|ADY23467.1| metal-binding heat shock protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 156 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 155 >gi|323490063|ref|ZP_08095284.1| putative metalloprotease [Planococcus donghaensis MPA1U2] gi|323396359|gb|EGA89184.1| putative metalloprotease [Planococcus donghaensis MPA1U2] Length = 160 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 75/141 (53%), Gaps = 12/141 (8%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----- 87 E+ F K + +K V ++ E+S+ F + I +N EYRG D+PT+V+SF Sbjct: 17 ELDFVKKILEHAAKQEKVTDS--EVSVTFVTNEMIRDINREYRGKDQPTDVISFAMEELG 74 Query: 88 ---TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 TA S MLGDI+++ + + +A G FE L L IHGFLHLLGYDH+ Sbjct: 75 EGETAIIGS--QEPRMLGDIIISLDRTKEQAEDFGHSFERELGFLAIHGFLHLLGYDHMT 132 Query: 145 DKDACVMEGLERSILEDLGIN 165 ++D M + IL LGI Sbjct: 133 EEDEKKMFSRQEEILVSLGIT 153 >gi|260494090|ref|ZP_05814221.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260198236|gb|EEW95752.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 163 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 5/116 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LSL+ TD+ I+ +N EYR D PT+V+SF A+ ++ + LGDI+++ E +E Sbjct: 50 LSLLLTDNRNIQVINREYRDKDAPTDVISF--AYHETEDFNIGPYDTLGDIIISLERVEE 107 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +A+ FE +++ HG LH+LGYDH++++D +M E +IL G Y+ Sbjct: 108 QASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMREREEAILSSFGYTRDYK 163 >gi|146284075|ref|YP_001174228.1| putative metalloprotease [Pseudomonas stutzeri A1501] gi|166232639|sp|A4VQY5|RRMF_PSEU5 RecName: Full=Probable rRNA maturation factor gi|145572280|gb|ABP81386.1| predicted metal-dependent hydrolase [Pseudomonas stutzeri A1501] gi|327482392|gb|AEA85702.1| putative metalloprotease [Pseudomonas stutzeri DSM 4166] Length = 160 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 1/116 (0%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ D LN +R D TNVLSFP A + +LGD+V+ ++E EA Sbjct: 36 ELTIRLVDEEEGRELNRTWRQKDYATNVLSFP-ADVPDEFLDIPLLGDLVICVPVVEREA 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK + H HL+IHG LHLLGYDH++D +A ME LER +L +LG DPY D Sbjct: 95 AEQGKTLDAHWAHLVIHGCLHLLGYDHIEDAEAEEMEALERQLLAELGHPDPYAED 150 >gi|229019527|ref|ZP_04176344.1| metalloprotease [Bacillus cereus AH1273] gi|229025769|ref|ZP_04182168.1| metalloprotease [Bacillus cereus AH1272] gi|228735477|gb|EEL86073.1| metalloprotease [Bacillus cereus AH1272] gi|228741783|gb|EEL91966.1| metalloprotease [Bacillus cereus AH1273] Length = 143 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF + MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIIGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 142 >gi|229169051|ref|ZP_04296767.1| metalloprotease [Bacillus cereus AH621] gi|228614460|gb|EEK71569.1| metalloprotease [Bacillus cereus AH621] Length = 143 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 142 >gi|257413987|ref|ZP_04744887.2| putative metalloprotease [Roseburia intestinalis L1-82] gi|257201590|gb|EEU99874.1| putative metalloprotease [Roseburia intestinalis L1-82] Length = 169 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 16/126 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E++L TD+ I +N EYR ID PT+VLSFP S G Sbjct: 42 AEINLTLTDNDGIHAINKEYRDIDAPTDVLSFPMLSYESAGDFSKLEDDYDDNFNPDTGE 101 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +MLGDI+++ + ++ +A G + LI+H LHL GYDH+ ++A +MEG + I Sbjct: 102 IMLGDIIISVDKVKEQAKSYGHSEKREYAFLILHSMLHLFGYDHMTPEEAAIMEGKQTEI 161 Query: 159 LEDLGI 164 L ++ I Sbjct: 162 LNEMNI 167 >gi|319892627|ref|YP_004149502.1| metal-dependent hydrolase [Staphylococcus pseudintermedius HKU10-03] gi|317162323|gb|ADV05866.1| metal-dependent hydrolase [Staphylococcus pseudintermedius HKU10-03] gi|323464335|gb|ADX76488.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 153 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 65/116 (56%), Gaps = 7/116 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVLAYE 109 ELS+ F D I+ +N +YR DK T+V+SF AF + M LGDI++ + Sbjct: 38 AELSVTFVDKAEIQEINRDYRQKDKVTDVISF--AFEEEEDIFEGMDVPRVLGDIIICTD 95 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G FE L L +HGFLHLLGYDH+ ++D VM G ++ IL G+ Sbjct: 96 VAAEQAEQYGHSFERELGFLALHGFLHLLGYDHMTEEDEKVMFGRQKDILNQFGLT 151 >gi|187477342|ref|YP_785366.1| putative metalloprotease [Bordetella avium 197N] gi|123514086|sp|Q2KWD6|RRMF_BORA1 RecName: Full=Probable rRNA maturation factor gi|115421928|emb|CAJ48448.1| conserved hypothetical protein [Bordetella avium 197N] Length = 161 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--MLGDIVLAYEI 110 EL++ LN ++RG D TNVL+F G L GDIV+ + Sbjct: 46 QAAELNVRLVGQAEGRRLNADFRGRDYATNVLTFEY------GVDPLGTARGDIVICAPV 99 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + EA K F +H HL IHG LH LGYDH+ ++A ME LE IL +GI DPY Sbjct: 100 LAREAREQKKSFVDHATHLTIHGVLHALGYDHIKVREAKRMEALETRILARMGIADPY 157 >gi|229061996|ref|ZP_04199322.1| metalloprotease [Bacillus cereus AH603] gi|229135128|ref|ZP_04263930.1| metalloprotease [Bacillus cereus BDRD-ST196] gi|228648357|gb|EEL04390.1| metalloprotease [Bacillus cereus BDRD-ST196] gi|228717305|gb|EEL68978.1| metalloprotease [Bacillus cereus AH603] Length = 143 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 142 >gi|291536163|emb|CBL09275.1| conserved hypothetical protein TIGR00043 [Roseburia intestinalis M50/1] Length = 165 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 16/126 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E++L TD+ I +N EYR ID PT+VLSFP S G Sbjct: 38 AEINLTLTDNDGIHAINKEYRDIDAPTDVLSFPMLSYESAGDFSKLEDDYDDNFNPDTGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +MLGDI+++ + ++ +A G + LI+H LHL GYDH+ ++A +MEG + I Sbjct: 98 IMLGDIIISVDKVKEQAKSYGHSEKREYAFLILHSMLHLFGYDHMTPEEAAIMEGKQTEI 157 Query: 159 LEDLGI 164 L ++ I Sbjct: 158 LNEMNI 163 >gi|229013523|ref|ZP_04170657.1| metalloprotease [Bacillus mycoides DSM 2048] gi|228747760|gb|EEL97629.1| metalloprotease [Bacillus mycoides DSM 2048] Length = 136 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 16 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 75 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 76 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 135 >gi|229098774|ref|ZP_04229712.1| metalloprotease [Bacillus cereus Rock3-29] gi|229117799|ref|ZP_04247164.1| metalloprotease [Bacillus cereus Rock1-3] gi|228665662|gb|EEL21139.1| metalloprotease [Bacillus cereus Rock1-3] gi|228684618|gb|EEL38558.1| metalloprotease [Bacillus cereus Rock3-29] Length = 143 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 142 >gi|227500708|ref|ZP_03930757.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] gi|227217166|gb|EEI82515.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] Length = 443 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 65/113 (57%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 E+ E+S+ F D I+ LN E+R ID+ T+VLSFP + +MLGDIV+ ++ Sbjct: 33 EDNYEVSITFVDREEIQRLNKEFRNIDRQTDVLSFPLDDDMNLPGEDIMLGDIVICMDVA 92 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A G +++L H LHLLGYDH+++ D M E+ I+ +L + Sbjct: 93 KDQAREFGHSLRREIMYLTCHSTLHLLGYDHMEEDDKRKMRAREKEIMRNLRV 145 >gi|148653768|ref|YP_001280861.1| hypothetical protein PsycPRwf_1971 [Psychrobacter sp. PRwf-1] gi|148572852|gb|ABQ94911.1| protein of unknown function UPF0054 [Psychrobacter sp. PRwf-1] Length = 185 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 +L + TD+ LN E R D TN+LS+P+ + + L LG++++ +++++ Sbjct: 67 QLGVYITDAVEGRALNLEARDKDYATNILSYPSELPAFIIEQMPELALGELIVCHDVVKQ 126 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 +A K H+ HL++HG LHLLG+DH + MEG E +ILE LGI +PY Sbjct: 127 QAAEQHKTVAEHVTHLLVHGILHLLGFDHELGQAQQDEMEGFEIAILEQLGIGNPY 182 >gi|229104934|ref|ZP_04235591.1| metalloprotease [Bacillus cereus Rock3-28] gi|228678508|gb|EEL32728.1| metalloprotease [Bacillus cereus Rock3-28] Length = 143 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGTEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 142 >gi|162147625|ref|YP_001602086.1| hypothetical protein GDI_1841 [Gluconacetobacter diazotrophicus PAl 5] gi|161786202|emb|CAP55784.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 152 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 7/131 (5%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 A+ ++ + + ++++ + I LN +R +KPTNVL+F D Sbjct: 15 ALVRRTARAAWGGDAPGPVTIMLDNDRAIRRLNARHRDRNKPTNVLTF-------DYPGG 67 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L GDI++A E + EA G+ +HL+HL++HG LHL G+DH +A ME E I Sbjct: 68 LPGGDIMIALETVRREAQAAGRPIRHHLMHLVVHGILHLRGHDHHQAGEARRMEMEEARI 127 Query: 159 LEDLGINDPYE 169 L L + +P++ Sbjct: 128 LGRLSVPNPWK 138 >gi|19704081|ref|NP_603643.1| metal-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|26006903|sp|Q8R5X4|RRMF_FUSNN RecName: Full=Probable rRNA maturation factor gi|19714281|gb|AAL94942.1| Hypothetical Metal-Binding Protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 162 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEA 115 LSL+ TD+ I+ +N EYR D PT+V+SF S LGDI+++ E +E +A Sbjct: 50 LSLLLTDNENIQVINREYRDKDAPTDVISFAYHETEDFNIGSYDTLGDIIISLERVEEQA 109 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + FE +++ HG LH+LGYDH++++D +M E +IL G Sbjct: 110 SEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKLMREREEAILSSFG 157 >gi|312793455|ref|YP_004026378.1| hypothetical protein Calkr_1257 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180595|gb|ADQ40765.1| protein of unknown function UPF0054 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 158 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +++ N I F++E E+S++ D++ I+ LN Sbjct: 1 MKIIIQN--QQDKVDVDQHISKIIEESIVNTIK--VFLEEENFEISVLIVDNNFIKELNK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC---------SSLMLGDIVLAYEIIEIEANVLGKEFE 123 YR ++K T+VLSFP F +G + LGDIV++ E +A G E Sbjct: 57 NYRNVNKETDVLSFPI-FEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAEEFGHSLE 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +L +H LHLLG+DH++D D VM E IL+ +G+ Sbjct: 116 REVAYLTVHSVLHLLGFDHIEDDDRKVMREYEEQILQSMGL 156 >gi|329924060|ref|ZP_08279323.1| translation metalloprotein YbeY [Paenibacillus sp. HGF5] gi|328940899|gb|EGG37207.1| translation metalloprotein YbeY [Paenibacillus sp. HGF5] Length = 165 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 14/124 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--------------ML 101 E+ L F D I LN EYRGID+PT+VLSF ++D + +L Sbjct: 41 EVDLTFVDDEGIHELNREYRGIDRPTDVLSFAMNEITNDELEIIYELEEGEELESVPDVL 100 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI+++ ++++ G E L L +HGFLHLLGYDH D+ M G + ++L + Sbjct: 101 GDIIISVPRAKLQSEEYGHSLERELGFLFVHGFLHLLGYDHQDEASEAEMMGKQEAVLAE 160 Query: 162 LGIN 165 +G+ Sbjct: 161 VGLT 164 >gi|260222300|emb|CBA31726.1| Putative metalloprotease Rfer_0737 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 147 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 7/113 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D+ +TLN EYR D TNVL+F D + D+VL ++ EA Sbjct: 42 EITVRIVDAEEGQTLNREYRQKDYATNVLTF-------DYTQEPVTADLVLCAPVVAKEA 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K E H H+I+HG LH G+DH D+DA VME E I+ LG +PY Sbjct: 95 KEQKKTLEAHYAHMIVHGTLHAQGWDHELDEDAEVMELRESEIMARLGFKNPY 147 >gi|149183353|ref|ZP_01861791.1| hypothetical protein BSG1_06587 [Bacillus sp. SG-1] gi|148848950|gb|EDL63162.1| hypothetical protein BSG1_06587 [Bacillus sp. SG-1] Length = 156 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 8/121 (6%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDI 104 E EL++ F + RI+ +N EYR D+PT+V+SF DG + LGDI Sbjct: 36 EPASELTVSFVTNERIQEINKEYRDKDQPTDVISFALEELGEDETVIVGDGIPRI-LGDI 94 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E + +A+ G F L L +HGFLHLLGYDH++++D M G ++ IL+ G+ Sbjct: 95 IISVEKAKDQADEYGHSFSRELGFLALHGFLHLLGYDHMNEEDEKRMFGRQKEILDGYGL 154 Query: 165 N 165 Sbjct: 155 Q 155 >gi|284159397|ref|YP_441146.3| hypothetical protein BTH_I0589 [Burkholderia thailandensis E264] gi|123537980|sp|Q2T103|RRMF_BURTA RecName: Full=Probable rRNA maturation factor gi|83655057|gb|ABC39120.1| conserved hypothetical protein TIGR00043, putative [Burkholderia thailandensis E264] Length = 437 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 288 PELDLAV-----QYGDEIGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 339 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 340 TLNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 395 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 396 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 437 >gi|261405613|ref|YP_003241854.1| hypothetical protein GYMC10_1764 [Paenibacillus sp. Y412MC10] gi|261282076|gb|ACX64047.1| protein of unknown function UPF0054 [Paenibacillus sp. Y412MC10] Length = 165 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 14/124 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--------------ML 101 E+ L F D I LN EYRGID+PT+VLSF ++D + +L Sbjct: 41 EVDLTFVDDEGIHELNREYRGIDRPTDVLSFAMNEITNDELEIIYELEEGEELESVPDVL 100 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI+++ ++++ G E L L +HGFLHLLGYDH D+ M G + ++L + Sbjct: 101 GDIIISVPRAKLQSEEYGHSLERELGFLFVHGFLHLLGYDHQDEASEAEMMGKQEAVLAE 160 Query: 162 LGIN 165 +G+ Sbjct: 161 VGLT 164 >gi|257140192|ref|ZP_05588454.1| unkown domain/putative metalloprotease fusion protein [Burkholderia thailandensis E264] Length = 265 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 116 PELDLAVQ-----YGDEIGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 167 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 168 TLNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 223 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 224 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 264 >gi|294791926|ref|ZP_06757074.1| putative metalloprotease [Veillonella sp. 6_1_27] gi|294457156|gb|EFG25518.1| putative metalloprotease [Veillonella sp. 6_1_27] Length = 158 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 9/131 (6%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 + V + +S+ Y ++E+ E+S++ ++ +I LN EYRGID+PT+VLSF A D Sbjct: 22 RKVCDEVSRVYGLEED--EMSILLCNNAKIHELNKEYRGIDRPTDVLSF--ALNEGDDYE 77 Query: 98 SL-----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGD++++ E +A G FE L +L H LH+LGYDH++D+D M Sbjct: 78 GSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKEMR 137 Query: 153 GLERSILEDLG 163 E IL +LG Sbjct: 138 TEEEFILGNLG 148 >gi|269798052|ref|YP_003311952.1| hypothetical protein Vpar_0991 [Veillonella parvula DSM 2008] gi|269094681|gb|ACZ24672.1| protein of unknown function UPF0054 [Veillonella parvula DSM 2008] Length = 158 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 9/131 (6%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 + V + +S+ Y ++E+ E+S++ D+ +I LN EYRGID+PT+VLSF A D Sbjct: 22 RKVCDEVSRVYGLEED--EMSILLCDNAKIHELNKEYRGIDRPTDVLSF--ALNEGDDYE 77 Query: 98 SL-----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGD++++ E +A G FE L +L H LH+LGYDH++D++ M Sbjct: 78 GSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEEKKEMR 137 Query: 153 GLERSILEDLG 163 E IL +LG Sbjct: 138 TEEEFILGNLG 148 >gi|331091150|ref|ZP_08339992.1| hypothetical protein HMPREF9477_00635 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405372|gb|EGG84908.1| hypothetical protein HMPREF9477_00635 [Lachnospiraceae bacterium 2_1_46FAA] Length = 164 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 15/126 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---------AFASSD----GCSS--L 99 E++L+ T + I+ +N E+R ID+ T+VLSFP AF D C + L Sbjct: 38 AEVNLLLTMNKEIQEMNAEFRHIDRATDVLSFPMIDYEKAGEFAFLEEDDSYFNCDTGEL 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 MLGDIV++ E + +A G + LI H LHLLGYDH+++++ ME ++ IL Sbjct: 98 MLGDIVISKEKVIAQAEEYGHTIKREYAFLIAHSMLHLLGYDHMEEQERLEMERKQKEIL 157 Query: 160 EDLGIN 165 E LGI Sbjct: 158 EQLGIT 163 >gi|167579898|ref|ZP_02372772.1| hypothetical protein BthaT_17231 [Burkholderia thailandensis TXDOH] gi|167617971|ref|ZP_02386602.1| hypothetical protein BthaB_16811 [Burkholderia thailandensis Bt4] Length = 265 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 77/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 116 PELDLAVQ-----YGDEIGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 167 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 168 TLNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 223 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 224 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 264 >gi|257882778|ref|ZP_05662431.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257886864|ref|ZP_05666517.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257898044|ref|ZP_05677697.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|293571620|ref|ZP_06682641.1| conserved hypothetical protein [Enterococcus faecium E980] gi|294622996|ref|ZP_06701885.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|257818436|gb|EEV45764.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257822918|gb|EEV49850.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257835956|gb|EEV61030.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|291597552|gb|EFF28714.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|291608290|gb|EFF37591.1| conserved hypothetical protein [Enterococcus faecium E980] Length = 158 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----------PTAFASSDGCSSLMLGDI 104 E+S+ F D+ I+ +N +YRG D PT+V+SF P F + +LGDI Sbjct: 37 TEMSVTFMDNAAIQVINRDYRGKDAPTDVISFALEEEGEDEIPVIFEDGENPLPRVLGDI 96 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E +A G ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 97 MISTERAAEQAEAYGHSYDRELGFLAVHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGL 156 Query: 165 N 165 Sbjct: 157 K 157 >gi|257884086|ref|ZP_05663739.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257819924|gb|EEV47072.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] Length = 158 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----------PTAFASSDGCSSLMLGDI 104 E+S+ F D+ I+ +N +YRG D PT+V+SF P F + +LGDI Sbjct: 37 TEMSVTFMDNATIQVINRDYRGKDAPTDVISFALEEEGEDEIPVIFEDGENPLPRVLGDI 96 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E +A G ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 97 MISIERAAEQAEAYGHSYDRELGFLAVHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGL 156 Query: 165 N 165 Sbjct: 157 K 157 >gi|163942059|ref|YP_001646943.1| putative metalloprotease [Bacillus weihenstephanensis KBAB4] gi|226701663|sp|A9VHT0|RRMF_BACWK RecName: Full=Probable rRNA maturation factor gi|163864256|gb|ABY45315.1| protein of unknown function UPF0054 [Bacillus weihenstephanensis KBAB4] Length = 156 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 155 >gi|227551970|ref|ZP_03982019.1| metal-dependent hydrolase [Enterococcus faecium TX1330] gi|257895438|ref|ZP_05675091.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|293378305|ref|ZP_06624474.1| metalloprotein, YbeY family [Enterococcus faecium PC4.1] gi|293568656|ref|ZP_06679971.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|227178875|gb|EEI59847.1| metal-dependent hydrolase [Enterococcus faecium TX1330] gi|257832003|gb|EEV58424.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|291588616|gb|EFF20449.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|292643169|gb|EFF61310.1| metalloprotein, YbeY family [Enterococcus faecium PC4.1] Length = 158 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----------PTAFASSDGCSSLMLGDI 104 E+S+ F D+ I+ +N +YRG D PT+V+SF P F + +LGDI Sbjct: 37 TEMSVTFMDNAAIQVINRDYRGKDAPTDVISFALEEEGEDEIPVIFEDGENPLPRVLGDI 96 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E +A G ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 97 MISTERAAEQAEAYGHSYDRELGFLAVHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGL 156 Query: 165 N 165 Sbjct: 157 K 157 >gi|209542256|ref|YP_002274485.1| hypothetical protein Gdia_0068 [Gluconacetobacter diazotrophicus PAl 5] gi|209529933|gb|ACI49870.1| protein of unknown function UPF0054 [Gluconacetobacter diazotrophicus PAl 5] Length = 202 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 7/131 (5%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 A+ ++ + + ++++ + I LN +R +KPTNVL+F D Sbjct: 65 ALVRRTARAAWGGDAPGPVTIMLDNDRAIRRLNARHRDRNKPTNVLTF-------DYPGG 117 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L GDI++A E + EA G+ +HL+HL++HG LHL G+DH +A ME E I Sbjct: 118 LPGGDIMIALETVRREAQAAGRPIRHHLMHLVVHGILHLRGHDHHQAGEARRMEMEEARI 177 Query: 159 LEDLGINDPYE 169 L L + +P++ Sbjct: 178 LGRLSVPNPWK 188 >gi|312135090|ref|YP_004002428.1| hypothetical protein Calow_1065 [Caldicellulosiruptor owensensis OL] gi|311775141|gb|ADQ04628.1| protein of unknown function UPF0054 [Caldicellulosiruptor owensensis OL] Length = 158 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 14/161 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +V+N I F++E E+S++ D++ I+ LN Sbjct: 1 MKIFIQN--QQDKVDVAEHISKIIEASVANTIK--IFLQEENFEVSVLIVDNNLIKELNR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC---------SSLMLGDIVLAYEIIEIEANVLGKEFE 123 +YR I+K T+VLSFP F +G + LGDIV++ E +A G E Sbjct: 57 KYRNINKETDVLSFPI-FEFKNGQLQEDIVIVEDEIPLGDIVISIEKALQQAEEFGHSLE 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 116 REVAYLTVHSVLHLLGFDHIEEDDRKVMRKYEEQILDSMGL 156 >gi|218132189|ref|ZP_03460993.1| hypothetical protein BACPEC_00046 [Bacteroides pectinophilus ATCC 43243] gi|217992910|gb|EEC58910.1| hypothetical protein BACPEC_00046 [Bacteroides pectinophilus ATCC 43243] Length = 173 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 19/160 (11%) Query: 25 EIHLRTLCEVVFAKAVSNLISKG--YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 E +R + E+ + ++ +I++ Y VE++++ TD+ I N EYRG+D PT+ Sbjct: 8 ETDIRIVPEIPEEEIINKVITQACDYEKCPYEVEVNVLLTDNESIHETNREYRGVDAPTD 67 Query: 83 VLSFPT---------AFASSDG--------CSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 VLSFP AF L+LGDIV++ E + +A G + Sbjct: 68 VLSFPMIDYEAPADFAFLEDSPVEDYFDPDTGELLLGDIVISVEKVMEQAEKYGHSVKRE 127 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L+ H LHL GYDH++ +A VME + IL ++GI Sbjct: 128 LAFLVAHSMLHLFGYDHMEPDEAEVMEDKQNQILLNIGIT 167 >gi|69247283|ref|ZP_00604284.1| Protein of unknown function UPF0054 [Enterococcus faecium DO] gi|257879928|ref|ZP_05659581.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257890443|ref|ZP_05670096.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257893049|ref|ZP_05672702.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|258616605|ref|ZP_05714375.1| putative metalloprotease [Enterococcus faecium DO] gi|260559562|ref|ZP_05831742.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261208626|ref|ZP_05923063.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566735|ref|ZP_06447149.1| metalloprotease [Enterococcus faecium D344SRF] gi|293556348|ref|ZP_06674929.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|293559426|ref|ZP_06675965.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|294616316|ref|ZP_06696109.1| hypothetical protein EfmE1636_2374 [Enterococcus faecium E1636] gi|294618706|ref|ZP_06698239.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|314939542|ref|ZP_07846770.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a04] gi|314942703|ref|ZP_07849529.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133C] gi|314948959|ref|ZP_07852325.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0082] gi|314953306|ref|ZP_07856234.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133A] gi|314993386|ref|ZP_07858751.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133B] gi|314995736|ref|ZP_07860825.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a01] gi|68194905|gb|EAN09375.1| Protein of unknown function UPF0054 [Enterococcus faecium DO] gi|257814156|gb|EEV42914.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257826803|gb|EEV53429.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257829428|gb|EEV56035.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|260074230|gb|EEW62552.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260077128|gb|EEW64848.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161456|gb|EFD09342.1| metalloprotease [Enterococcus faecium D344SRF] gi|291590830|gb|EFF22546.1| hypothetical protein EfmE1636_2374 [Enterococcus faecium E1636] gi|291595049|gb|EFF26393.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|291601415|gb|EFF31686.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|291606640|gb|EFF36035.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|313590008|gb|EFR68853.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a01] gi|313592051|gb|EFR70896.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133B] gi|313594649|gb|EFR73494.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133A] gi|313598568|gb|EFR77413.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133C] gi|313641178|gb|EFS05758.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a04] gi|313644618|gb|EFS09198.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0082] Length = 158 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----------PTAFASSDGCSSLMLGDI 104 E+S+ F D+ I+ +N +YRG D PT+V+SF P F + +LGDI Sbjct: 37 TEMSVTFMDNAAIQVINRDYRGKDAPTDVISFALEEEGEDEIPVIFEDGENPLPRVLGDI 96 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E +A G ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 97 MISIERAAEQAEAYGHSYDRELGFLAVHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGL 156 Query: 165 N 165 Sbjct: 157 K 157 >gi|300813825|ref|ZP_07094130.1| translation metalloprotein YbeY [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512012|gb|EFK39207.1| translation metalloprotein YbeY [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 146 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 10/121 (8%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD 103 I K Y+V S+ F D + I+ LN +YR +DK T+VLSFP D ++LGD Sbjct: 34 IDKEYYV-------SVSFVDDNEIKNLNRDYRNVDKVTDVLSFPMDEEYED---KIILGD 83 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 IV+ + +A G L +L +H LHLLGYDH++++D +M E+ I++ L Sbjct: 84 IVINMARVLSQAKEFGHSNRRELSYLCVHSTLHLLGYDHIEEEDRIIMRAKEKEIMDKLK 143 Query: 164 I 164 I Sbjct: 144 I 144 >gi|300812188|ref|ZP_07092630.1| translation metalloprotein YbeY [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496824|gb|EFK31904.1| translation metalloprotein YbeY [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 174 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 9/131 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---------AFASS 93 L++K K+N E+S+ F D R + +N +YR D+PT+V+SF A + Sbjct: 31 LMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRDKDRPTDVISFAIEDGDDGLDLAMFTQ 90 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 D + +GD+ + +IE + G F+ + I+HG+LHL GYDH++ +A M G Sbjct: 91 DPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFGYTIVHGYLHLNGYDHIEPDEAKEMFG 150 Query: 154 LERSILEDLGI 164 ++ ILE+ G+ Sbjct: 151 IQGKILEEYGL 161 >gi|237753148|ref|ZP_04583628.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229375415|gb|EEO25506.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 146 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 9/106 (8%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 L+F ++ +I+ LN E+RGIDKPT+VLSFP F SL+LG IV++ E A L Sbjct: 40 LLFVENAKIQALNLEFRGIDKPTDVLSFPLEF-------SLLLGSIVISVEFASKIAQEL 92 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G + + L IHG LHLLG+DH + D ER I+E G+ Sbjct: 93 GHSLNDEIALLFIHGVLHLLGFDH--EVDNGEHRERERKIVEKFGL 136 >gi|313903999|ref|ZP_07837379.1| protein of unknown function UPF0054 [Eubacterium cellulosolvens 6] gi|313471148|gb|EFR66470.1| protein of unknown function UPF0054 [Eubacterium cellulosolvens 6] Length = 181 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 68/129 (52%), Gaps = 18/129 (13%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-TAF-------------ASSDG----C 96 E+S+ F D I +N E+RGIDK T+VLSFP T F A++D Sbjct: 38 AEVSITFVDDEEIRRVNREFRGIDKVTDVLSFPVTQFTPPADFSILEDDEAAADSFDPES 97 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 L LGDI+++ +A G + + LI H LHL+GYDH+ +++A VME + Sbjct: 98 GELQLGDILISVSRAMKQAEEYGHSLKREIGFLIAHSVLHLMGYDHMTEEEATVMEKKQA 157 Query: 157 SILEDLGIN 165 LEDLGI Sbjct: 158 RYLEDLGIT 166 >gi|312876030|ref|ZP_07736019.1| protein of unknown function UPF0054 [Caldicellulosiruptor lactoaceticus 6A] gi|311797228|gb|EFR13568.1| protein of unknown function UPF0054 [Caldicellulosiruptor lactoaceticus 6A] Length = 158 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 10/125 (8%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC---------SSL 99 F++E E+S++ D++ I+ LN YR ++K T+VLSFP F +G + Sbjct: 33 FLEEENFEISVLIVDNNFIKELNKNYRNVNKETDVLSFPI-FEFKNGKLLEDIVIMEDEI 91 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDIV++ E +A G E + +L +H LHLLG+DH++D D VM E IL Sbjct: 92 PLGDIVISIEKAAQQAEEFGHSLEREVAYLTVHSVLHLLGFDHIEDDDRKVMREYEEQIL 151 Query: 160 EDLGI 164 + +G+ Sbjct: 152 QSMGL 156 >gi|323340792|ref|ZP_08081044.1| metalloprotease [Lactobacillus ruminis ATCC 25644] gi|323091915|gb|EFZ34535.1| metalloprotease [Lactobacillus ruminis ATCC 25644] Length = 159 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 11/121 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----------LGD 103 E+S+ D+ I +N +YRG+DKPT+V+SF D ++ +GD Sbjct: 37 TEMSVTLMDNEHIHEINKKYRGVDKPTDVISFAIEEDDPDEVPIILPEDEEFDIPKNIGD 96 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I+++ + ++ +A LG + L L++HGFLHL GYDH+ ++D M GL+R IL+ G Sbjct: 97 IMVSMDKVKEQAEYLGHSEDRELGFLVVHGFLHLNGYDHMKEEDEKEMFGLQREILDSYG 156 Query: 164 I 164 + Sbjct: 157 L 157 >gi|227432227|ref|ZP_03914223.1| metal-dependent hydrolase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352000|gb|EEJ42230.1| metal-dependent hydrolase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 160 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 15/123 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------------PTAFASSDGCSSLMLG 102 E+S+ F ++ I N +YRGIDKPT+V+SF P F D + +G Sbjct: 38 TEMSVTFMNNEEIHQYNKKYRGIDKPTDVISFAIEEDGDDLPVLPDEFM--DAVLAKNIG 95 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILED 161 DI+++ +II +A LG +E L L++HGFLHL GYDH+ D + M L+R IL++ Sbjct: 96 DILVSVDIINSQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQREILDN 155 Query: 162 LGI 164 G+ Sbjct: 156 YGL 158 >gi|160896671|ref|YP_001562253.1| hypothetical protein Daci_1224 [Delftia acidovorans SPH-1] gi|238687183|sp|A9BUG5|RRMF_DELAS RecName: Full=Probable rRNA maturation factor gi|160362255|gb|ABX33868.1| protein of unknown function UPF0054 [Delftia acidovorans SPH-1] Length = 152 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 17/120 (14%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-----PTAFASSDGCSSLMLGDIVLAYE 109 E+++ D+ + LN EYR D TNVL+F PTA A D+VL Sbjct: 42 AEITVRIVDAEEGQQLNREYRQKDYATNVLTFDYQQEPTAMA-----------DLVLCAP 90 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 ++E EA K E H HL++HG LH G+DH ++DA ME E I+ +LG DPY Sbjct: 91 VVEREAREQNKTLEEHYAHLLVHGTLHAQGWDHETSEQDAEEMEAYETEIMVELGFADPY 150 >gi|325661630|ref|ZP_08150254.1| hypothetical protein HMPREF0490_00988 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472157|gb|EGC75371.1| hypothetical protein HMPREF0490_00988 [Lachnospiraceae bacterium 4_1_37FAA] Length = 164 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 21/151 (13%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L E V A+AV Y E++L+ T + I +N ++R ID+ T+VLSFP Sbjct: 18 RKLAEKVIAEAVD------YEQCPYETEVNLLLTMNEEIREMNRQFREIDRATDVLSFPM 71 Query: 89 AFASSDG---------------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + G LMLGDIV++ E + +A G E L+ H Sbjct: 72 VDYGTPGDFEFLEEDDSYFHPESGELMLGDIVISKEKVTAQAEEYGHTEEREFAFLVAHS 131 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHL GYDH+++ + VME +R ILE L I Sbjct: 132 MLHLFGYDHMEEDERAVMEQKQREILERLNI 162 >gi|228954587|ref|ZP_04116612.1| metalloprotease [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071806|ref|ZP_04205021.1| metalloprotease [Bacillus cereus F65185] gi|229081563|ref|ZP_04214061.1| metalloprotease [Bacillus cereus Rock4-2] gi|229180580|ref|ZP_04307922.1| metalloprotease [Bacillus cereus 172560W] gi|229192512|ref|ZP_04319475.1| metalloprotease [Bacillus cereus ATCC 10876] gi|228591089|gb|EEK48945.1| metalloprotease [Bacillus cereus ATCC 10876] gi|228603004|gb|EEK60483.1| metalloprotease [Bacillus cereus 172560W] gi|228701768|gb|EEL54256.1| metalloprotease [Bacillus cereus Rock4-2] gi|228711401|gb|EEL63361.1| metalloprotease [Bacillus cereus F65185] gi|228805244|gb|EEM51838.1| metalloprotease [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 154 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 34 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 94 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 153 >gi|218233833|ref|YP_002369110.1| putative metalloprotease [Bacillus cereus B4264] gi|226706180|sp|B7HCS7|RRMF_BACC4 RecName: Full=Probable rRNA maturation factor gi|218161790|gb|ACK61782.1| conserved hypothetical protein TIGR00043 [Bacillus cereus B4264] Length = 156 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 36 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 155 >gi|30022381|ref|NP_834012.1| putative metalloprotease [Bacillus cereus ATCC 14579] gi|33301866|sp|Q812T1|RRMF_BACCR RecName: Full=Probable rRNA maturation factor gi|29897939|gb|AAP11213.1| hypothetical Metal-Binding Protein [Bacillus cereus ATCC 14579] Length = 156 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 36 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 155 >gi|228960568|ref|ZP_04122217.1| metalloprotease [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048022|ref|ZP_04193598.1| metalloprotease [Bacillus cereus AH676] gi|229111776|ref|ZP_04241324.1| metalloprotease [Bacillus cereus Rock1-15] gi|229129580|ref|ZP_04258550.1| metalloprotease [Bacillus cereus BDRD-Cer4] gi|229146888|ref|ZP_04275253.1| metalloprotease [Bacillus cereus BDRD-ST24] gi|229152503|ref|ZP_04280695.1| metalloprotease [Bacillus cereus m1550] gi|228631111|gb|EEK87748.1| metalloprotease [Bacillus cereus m1550] gi|228636716|gb|EEK93181.1| metalloprotease [Bacillus cereus BDRD-ST24] gi|228653897|gb|EEL09765.1| metalloprotease [Bacillus cereus BDRD-Cer4] gi|228671770|gb|EEL27066.1| metalloprotease [Bacillus cereus Rock1-15] gi|228723479|gb|EEL74848.1| metalloprotease [Bacillus cereus AH676] gi|228799168|gb|EEM46136.1| metalloprotease [Bacillus thuringiensis serovar pakistani str. T13001] Length = 154 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 34 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 94 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 153 >gi|257126606|ref|YP_003164720.1| hypothetical protein Lebu_1864 [Leptotrichia buccalis C-1013-b] gi|257050545|gb|ACV39729.1| protein of unknown function UPF0054 [Leptotrichia buccalis C-1013-b] Length = 153 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 73/122 (59%), Gaps = 11/122 (9%) Query: 47 GYFVKENIVE--------LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 GY +K+ E LSL+ T + +I+ +N EYR D PT+V+SF A+ ++ + Sbjct: 27 GYILKDEYKEEFDKNEYYLSLLITTNEQIQEINCEYRQKDAPTDVISF--AYNETENFGA 84 Query: 99 L-MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + MLGDIV++ E ++ +++ G E +++ HG LHLLGYDH++++D VM E Sbjct: 85 VNMLGDIVISIERVKEQSSEYGHSDEREFYYVLCHGMLHLLGYDHIEEQDKVVMRKREEE 144 Query: 158 IL 159 IL Sbjct: 145 IL 146 >gi|42519247|ref|NP_965177.1| hypothetical protein LJ1323 [Lactobacillus johnsonii NCC 533] gi|62901443|sp|Q74IY8|RRMF_LACJO RecName: Full=Probable rRNA maturation factor gi|41583535|gb|AAS09143.1| hypothetical protein LJ_1323 [Lactobacillus johnsonii NCC 533] Length = 175 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 13/155 (8%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + DE++ + + +SNL+ +K KEN E+S+ F S +I +N +YRG D+ Sbjct: 8 FNDEVNFLKDSDKDWITWISNLLLSAKKEIHKENTQEMSINFVSSKKIHEINKKYRGKDR 67 Query: 80 PTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 PT+V+SF +AF S D +GD+ L E+I+ + F + Sbjct: 68 PTDVISFAIEDGLDEDFISAF-SDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFGYT 126 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++HG+LHL GYDH++D +A VM G++ +L + G+ Sbjct: 127 LVHGYLHLNGYDHIEDDEAKVMFGIQGKVLREYGL 161 >gi|329118104|ref|ZP_08246816.1| metal-dependent hydrolase [Neisseria bacilliformis ATCC BAA-1200] gi|327465764|gb|EGF12037.1| metal-dependent hydrolase [Neisseria bacilliformis ATCC BAA-1200] Length = 165 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 5/118 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEII 111 E+SL+ D N +YRG D TNVLSF A + C+ L + GD+V+ +I+ Sbjct: 50 AEISLILLDEPAARACNRDYRGKDYATNVLSF--ALDEGETCAPLSDGLHGDLVICPQIV 107 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 EA GK E H HL IHG LHL+GYDH++D +A ME LE +L L DPY+ Sbjct: 108 LKEAAEQGKTPEQHYAHLTIHGTLHLMGYDHIEDTEAEEMETLETELLNQLAYPDPYK 165 >gi|152992855|ref|YP_001358576.1| metalloprotease [Sulfurovum sp. NBC37-1] gi|172048740|sp|A6Q9R0|RRMF_SULNB RecName: Full=Probable rRNA maturation factor gi|151424716|dbj|BAF72219.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 147 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 5/111 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--TAFASSDGCSSLMLGDIVLAYEIIEI 113 E+ L+ TD+ I+ LN EYR D PT+VLSFP T F + + LG IV++ + + Sbjct: 31 EIELIITDNENIQELNREYRDRDNPTDVLSFPLETPF-TEQSVFDIPLGTIVISADFVRE 89 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A G ++ L L IHG LHLLGYDH + D M ER I+E+ G+ Sbjct: 90 RAKTYGHTEQDELKLLFIHGLLHLLGYDH--ETDEGEMRQKEREIIEEFGL 138 >gi|224370644|ref|YP_002604808.1| hypothetical protein HRM2_35790 [Desulfobacterium autotrophicum HRM2] gi|223693361|gb|ACN16644.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 155 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 2/105 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+V TD I LN YRG KPTNVLSFP + + +LGD+V++ E EA Sbjct: 39 ELSVVITDDAHIMALNQTYRGKAKPTNVLSFPMLDSEFTSIAPQLLGDLVISVETAMREA 98 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + G + L L+IHG LHL+G+DH +D V +E+ LE Sbjct: 99 DEAGITLDERLSQLMIHGVLHLVGFDHEQGEDEAV--KMEQRSLE 141 >gi|182418401|ref|ZP_02949695.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237666831|ref|ZP_04526816.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377783|gb|EDT75327.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237658030|gb|EEP55585.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 168 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 17/126 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSD-GCSS 98 E+SL+F D+ I +N E R ID+ T+VLSFP F+ SD Sbjct: 39 EVSLLFVDNEEIREINNETRNIDRETDVLSFPMLDYDNKKIFKEMYKGYEFSQSDFDGEE 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDIVL+ E ++ FE +L++H LHLLGYDH++++D +M E I Sbjct: 99 LVLGDIVLSLEKALEQSLEFNHSFEREASYLVVHSVLHLLGYDHMEEEDKVIMRKREEEI 158 Query: 159 LEDLGI 164 L +L I Sbjct: 159 LNELNI 164 >gi|228941468|ref|ZP_04104019.1| metalloprotease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974399|ref|ZP_04134968.1| metalloprotease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980992|ref|ZP_04141295.1| metalloprotease [Bacillus thuringiensis Bt407] gi|228778783|gb|EEM27047.1| metalloprotease [Bacillus thuringiensis Bt407] gi|228785449|gb|EEM33459.1| metalloprotease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818249|gb|EEM64323.1| metalloprotease [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 154 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 34 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 94 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDENEMFGRQKEILEAFGLG 153 >gi|294782140|ref|ZP_06747466.1| metalloprotease [Fusobacterium sp. 1_1_41FAA] gi|294480781|gb|EFG28556.1| metalloprotease [Fusobacterium sp. 1_1_41FAA] Length = 162 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 5/110 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LS++ TD+ I+ +N EYR D PT+V+SF A+ +D + LGDI+++ E +E Sbjct: 50 LSVLLTDNKNIQVINREYRDKDAPTDVISF--AYHETDDFNIGPYDTLGDIIISLERVEE 107 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +++ FE +++ HG LH+LGYDH++++D VM E +IL G Sbjct: 108 QSSEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKVMREREEAILSSFG 157 >gi|294793789|ref|ZP_06758926.1| putative metalloprotease [Veillonella sp. 3_1_44] gi|294455359|gb|EFG23731.1| putative metalloprotease [Veillonella sp. 3_1_44] Length = 158 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 9/131 (6%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 + V + +S+ Y + E+ E+S++ ++ +I LN EYRGID+PT+VLSF A D Sbjct: 22 RKVCDEVSRVYGLDED--EMSILLCNNAKIHELNKEYRGIDRPTDVLSF--ALNEGDDYE 77 Query: 98 SL-----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGD++++ E +A G FE L +L H LH+LGYDH++D+D M Sbjct: 78 GSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKEMR 137 Query: 153 GLERSILEDLG 163 E IL +LG Sbjct: 138 TEEEFILGNLG 148 >gi|256845042|ref|ZP_05550500.1| metal-binding protein [Fusobacterium sp. 3_1_36A2] gi|256718601|gb|EEU32156.1| metal-binding protein [Fusobacterium sp. 3_1_36A2] Length = 162 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 5/110 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LSL+ TD+ I+ +N EYR D PT+V+SF A+ ++ + LGDI+++ E +E Sbjct: 50 LSLLLTDNENIQVINREYRDKDAPTDVISF--AYHETEDFNIGPYDTLGDIIISLERVEE 107 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A FE +++ HG LH+LGYDH++++D +M E +IL G Sbjct: 108 QAGEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMRKREEAILSSFG 157 >gi|261401807|ref|ZP_05987932.1| putative metalloprotease [Neisseria lactamica ATCC 23970] gi|269208047|gb|EEZ74502.1| putative metalloprotease [Neisseria lactamica ATCC 23970] Length = 171 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 11/146 (7%) Query: 37 AKAVSNLISKGYFVKE---------NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 A + +NL SK F + ++SL+ D N +YRG D TNVLSF Sbjct: 24 ASSAANLPSKHDFYRWAWSALKSGYRRADISLILLDEEAARAYNCDYRGKDYATNVLSFA 83 Query: 88 TAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 + C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D Sbjct: 84 LNEGETLPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIED 143 Query: 146 KDACVMEGLERSILEDLGINDPYEVD 171 +A +ME E ++ G +PY D Sbjct: 144 DEAEIMEAEEIRLMRAAGYPNPYRED 169 >gi|326942085|gb|AEA17981.1| putative metalloprotease [Bacillus thuringiensis serovar chinensis CT-43] Length = 156 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 36 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDENEMFGRQKEILEAFGLG 155 >gi|33595813|ref|NP_883456.1| putative metalloprotease [Bordetella parapertussis 12822] gi|46577410|sp|Q7WB68|RRMF_BORPA RecName: Full=Probable rRNA maturation factor gi|33565892|emb|CAE36440.1| conserved hypothetical protein [Bordetella parapertussis] Length = 157 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL L LN E+RG D TNVL+F DG + GDIV+ ++ EA Sbjct: 46 ELGLRLVGLAEGRRLNREFRGRDYATNVLTFEYG-TGPDGVAR---GDIVVCVPVLAREA 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H HL +HG LH LGYDH+ +A ME LE +L +GI DPY Sbjct: 102 REQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETVVLARMGIADPY 154 >gi|284047990|ref|YP_003398329.1| protein of unknown function UPF0054 [Acidaminococcus fermentans DSM 20731] gi|283952211|gb|ADB47014.1| protein of unknown function UPF0054 [Acidaminococcus fermentans DSM 20731] Length = 160 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 11/142 (7%) Query: 32 CEVVFAKAVSNLISKGYFV---KENIV---ELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 E+ + + + K + KEN+ E+ + ++ I TLN +YRGID+PT+VLS Sbjct: 10 TEIAIPEELEETLKKAMDIVARKENLTDNTEVDITIVNNEEIHTLNRDYRGIDRPTDVLS 69 Query: 86 FPTAFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 F DG + +LGD++++ + G + +L +HG LHLLGY Sbjct: 70 FALDEGDEEPEVEDGEAEHLLGDVIISAPRAVEQGEEFGHGLTREMTYLAVHGMLHLLGY 129 Query: 141 DHVDDKDACVMEGLERSILEDL 162 DH+++ D VM E IL +L Sbjct: 130 DHMEEADKRVMRAREEEILREL 151 >gi|168181634|ref|ZP_02616298.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum Bf] gi|237796401|ref|YP_002863953.1| putative metalloprotease [Clostridium botulinum Ba4 str. 657] gi|259646946|sp|C3L3F6|RRMF_CLOB6 RecName: Full=Probable rRNA maturation factor gi|182675188|gb|EDT87149.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum Bf] gi|229263327|gb|ACQ54360.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum Ba4 str. 657] Length = 166 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 23/150 (15%) Query: 36 FAKAVSNLISKGYFVKENIV----ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--- 88 F + +I Y +KE V E+S+VF D++ I+ +N +YR IDK T+VLSFP Sbjct: 17 FENKIKEIID--YALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDY 74 Query: 89 -------------AFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 F SD +L+LGDI L+ E E ++ G F +L IH Sbjct: 75 EEGKVFKDVYLNYEFDESDLDEGNLILGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSV 134 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHLLGYDH+++++ +M E IL+ + Sbjct: 135 LHLLGYDHMEEEEKAIMRQREEEILKSFNL 164 >gi|282882469|ref|ZP_06291090.1| putative metalloprotease [Peptoniphilus lacrimalis 315-B] gi|281297611|gb|EFA90086.1| putative metalloprotease [Peptoniphilus lacrimalis 315-B] Length = 146 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 10/121 (8%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD 103 I K Y+V S+ F D + I+ LN +YR +DK T+VLSFP D ++LGD Sbjct: 34 IVKEYYV-------SVSFVDDNEIKNLNRDYRNVDKVTDVLSFPMDEEYED---KIILGD 83 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 IV+ + +A G L +L +H LHLLGYDH++++D +M E+ I++ L Sbjct: 84 IVINMARVLSQAKEFGHSNRRELSYLCVHSTLHLLGYDHIEEEDRIIMRAKEKEIMDKLK 143 Query: 164 I 164 I Sbjct: 144 I 144 >gi|225572106|ref|ZP_03780970.1| hypothetical protein RUMHYD_00400 [Blautia hydrogenotrophica DSM 10507] gi|225040440|gb|EEG50686.1| hypothetical protein RUMHYD_00400 [Blautia hydrogenotrophica DSM 10507] Length = 164 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 15/126 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---------------CSSL 99 V+++LV TD+ I+ +N ++R I+ PT+VLSFP + G L Sbjct: 38 VQINLVLTDNEEIQRVNQQFRDINAPTDVLSFPMIPFPTPGDYKILEEEDSYFDLDTGEL 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDI+++ +E +A G L+ H LHLLGYDH+ K+A VME + L Sbjct: 98 ILGDIMISIPRMETQAQEFGHSQVREFSFLVAHSILHLLGYDHMTPKEAAVMEAKQSQAL 157 Query: 160 EDLGIN 165 E+L I Sbjct: 158 EELQIR 163 >gi|291533049|emb|CBL06162.1| conserved hypothetical protein TIGR00043 [Megamonas hypermegale ART12/1] Length = 159 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 4/115 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEI 110 E+S+ FTD+ I +N EYR +D+PT+V+SF MLGDI+++ E Sbjct: 43 AEVSITFTDNEHIHEINREYRKVDRPTDVISFALNEGDEPNIEGEIPVNMLGDIIISVEK 102 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G + L +HG LHLLGYDH+++ D M E ++E LGI+ Sbjct: 103 AIEQAGDYGHSIRREIAFLTVHGMLHLLGYDHIEEADRVEMRKEEDFVMEQLGIS 157 >gi|170017068|ref|YP_001727987.1| metal-dependent hydrolase [Leuconostoc citreum KM20] gi|238688965|sp|B1MYE1|RRMF_LEUCK RecName: Full=Probable rRNA maturation factor gi|169803925|gb|ACA82543.1| Predicted metal-dependent hydrolase [Leuconostoc citreum KM20] Length = 160 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 11/121 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FASSDGCS---SLMLGDI 104 E+S+ F ++ I+ N +YRG+DKPT+V+SF S D + + +GDI Sbjct: 38 TEMSVTFVNNDEIQRYNRDYRGVDKPTDVISFAIEEGEDDFNIISDDAWTEDIAKNIGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLG 163 +++ +II +A LG +E L L++HGFLHL GYDH+ D + M L+R IL++ G Sbjct: 98 IVSVDIIGAQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQREILDNYG 157 Query: 164 I 164 + Sbjct: 158 L 158 >gi|91775004|ref|YP_544760.1| hypothetical protein Mfla_0649 [Methylobacillus flagellatus KT] gi|122400164|sp|Q1H3L8|RRMF_METFK RecName: Full=Probable rRNA maturation factor gi|91708991|gb|ABE48919.1| protein of unknown function UPF0054 [Methylobacillus flagellatus KT] Length = 149 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E +L D LN +YRG D TNVL+FP ++GDI+L ++ E Sbjct: 35 TEATLRIVDEEEGRMLNRDYRGKDYATNVLTFPLE------EEPWLVGDIILCAPVVARE 88 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A E+H HL +HG LH+ GYDH D+ A +ME +E + LG DPY Sbjct: 89 AAEQNITLESHYAHLTVHGILHMHGYDHEDEHQAELMESIESFTMIQLGYPDPY 142 >gi|15606551|ref|NP_213931.1| hypothetical protein aq_1354 [Aquifex aeolicus VF5] gi|6686198|sp|O67367|RRMF_AQUAE RecName: Full=Probable rRNA maturation factor gi|37927359|pdb|1OZ9|A Chain A, Crystal Structure Of Aq_1354, A Hypothetical Protein From Aquifex Aeolicus gi|2983779|gb|AAC07338.1| hypothetical protein aq_1354 [Aquifex aeolicus VF5] Length = 150 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 N VELS+ TD I LN YR DKPT+VLSFP + +LGD+V++ + E Sbjct: 39 NNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPMG---EEFGGYKILGDVVISQDTAE 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +A LG E + LI+HG +HLLGYDH Sbjct: 96 RQARELGHSLEEEVKRLIVHGIVHLLGYDH 125 >gi|319409916|emb|CBY90241.1| putative metalloprotease NMB0538 [Neisseria meningitidis WUE 2594] Length = 251 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF + C S + GD+++ +++ Sbjct: 131 ADISLILLDEEEARDYNRDYRGKDYATNVLSFALNEGETLPCQVSEKLYGDLIICPQVVL 190 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 191 KEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPYQED 249 >gi|237744342|ref|ZP_04574823.1| metal-binding protein [Fusobacterium sp. 7_1] gi|256027792|ref|ZP_05441626.1| metal-binding protein [Fusobacterium sp. D11] gi|289765747|ref|ZP_06525125.1| metal-binding protein [Fusobacterium sp. D11] gi|229431571|gb|EEO41783.1| metal-binding protein [Fusobacterium sp. 7_1] gi|289717302|gb|EFD81314.1| metal-binding protein [Fusobacterium sp. D11] Length = 163 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 5/116 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LSL+ TD+ I+ +N EYR D PT+V+SF A+ ++ + LGDI+++ E +E Sbjct: 50 LSLLLTDNRNIQVINREYRDKDAPTDVISF--AYHETEDFNIGPYDTLGDIIISLERVEE 107 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +A+ FE +++ HG LH+LGYDH++++D +M E +IL G Y+ Sbjct: 108 QASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMREREEAILFSFGYTRDYK 163 >gi|237740707|ref|ZP_04571188.1| metal-binding protein [Fusobacterium sp. 2_1_31] gi|229422724|gb|EEO37771.1| metal-binding protein [Fusobacterium sp. 2_1_31] Length = 161 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 5/110 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LS++ TD+ I+ +N EYR D PT+V+SF A+ +D + LGDI+++ E +E Sbjct: 50 LSVLLTDNKNIQVINREYRDKDAPTDVISF--AYHETDDFNIGPYDTLGDIIISLERVEE 107 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +++ FE +++ HG LH+LGYDH++++D VM E +IL G Sbjct: 108 QSSEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKVMREREEAILSSFG 157 >gi|16800570|ref|NP_470838.1| putative metalloprotease [Listeria innocua Clip11262] gi|26006924|sp|Q92BP5|RRMF_LISIN RecName: Full=Probable rRNA maturation factor gi|16413975|emb|CAC96733.1| lin1502 [Listeria innocua Clip11262] gi|313618896|gb|EFR90761.1| putative metalloprotease [Listeria innocua FSL S4-378] gi|313623746|gb|EFR93888.1| putative metalloprotease [Listeria innocua FSL J1-023] Length = 161 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 12/137 (8%) Query: 40 VSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------- 89 V N++ + GY E ELSL FT + I+ +N EYR D+ T+V+SF Sbjct: 23 VENILQFAAGYLKIEEGTELSLTFTTNEGIQEINREYRNKDQATDVISFALEEMGDGETE 82 Query: 90 --FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + D + MLGDI+++ E E +A G L L +HG LHLLGYDH++ + Sbjct: 83 IDWGDFDLETPRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDE 142 Query: 148 ACVMEGLERSILEDLGI 164 VM GL++ +L+ G+ Sbjct: 143 EKVMFGLQKEVLDAYGL 159 >gi|228910137|ref|ZP_04073957.1| metalloprotease [Bacillus thuringiensis IBL 200] gi|228849654|gb|EEM94488.1| metalloprotease [Bacillus thuringiensis IBL 200] Length = 154 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E E+S+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 34 EGGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 94 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGLG 153 >gi|225567934|ref|ZP_03776959.1| hypothetical protein CLOHYLEM_04007 [Clostridium hylemonae DSM 15053] gi|225163222|gb|EEG75841.1| hypothetical protein CLOHYLEM_04007 [Clostridium hylemonae DSM 15053] Length = 167 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 15/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGC-----SSL 99 +++L+ T + +I+ +N E+RGID+PT+VLSFP A + C L Sbjct: 41 AQVNLLLTTNLQIQEMNEEFRGIDRPTDVLSFPMAEYEHPGDFGCLKEQEDCFDPESGEL 100 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDIV++ + + +A G + LI H LHL GYDH+++K+ ME +R IL Sbjct: 101 LLGDIVISKDKVISQAEEFGHSLKREYAFLIAHSMLHLTGYDHMEEKERLDMEAKQREIL 160 Query: 160 EDLGI 164 L I Sbjct: 161 NRLNI 165 >gi|254671437|emb|CBA08953.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 251 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F + + + GY ++SL+ D N +YRG D TNVLSF + Sbjct: 116 FYRWAWSALKSGY----RRADISLILLDEEAARAYNRDYRGKDYATNVLSFALNEGETLP 171 Query: 96 C--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A +ME Sbjct: 172 CQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEA 231 Query: 154 LERSILEDLGINDPYEVD 171 E ++ G +PY D Sbjct: 232 EEIRLMRAAGYPNPYRED 249 >gi|227878695|ref|ZP_03996609.1| metal-dependent hydrolase [Lactobacillus crispatus JV-V01] gi|256843289|ref|ZP_05548777.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256850354|ref|ZP_05555782.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|262046498|ref|ZP_06019460.1| metal-dependent hydrolase [Lactobacillus crispatus MV-3A-US] gi|293380656|ref|ZP_06626707.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus crispatus 214-1] gi|295693064|ref|YP_003601674.1| metalloprotease [Lactobacillus crispatus ST1] gi|312978180|ref|ZP_07789924.1| putative metalloprotease [Lactobacillus crispatus CTV-05] gi|227861710|gb|EEJ69315.1| metal-dependent hydrolase [Lactobacillus crispatus JV-V01] gi|256614709|gb|EEU19910.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256712751|gb|EEU27744.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|260573369|gb|EEX29927.1| metal-dependent hydrolase [Lactobacillus crispatus MV-3A-US] gi|290922784|gb|EFD99735.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus crispatus 214-1] gi|295031170|emb|CBL50649.1| Metalloprotease [Lactobacillus crispatus ST1] gi|310894898|gb|EFQ43968.1| putative metalloprotease [Lactobacillus crispatus CTV-05] Length = 174 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 L++K K+N +E+S+ F D R +N +YR D+PT+V+SF A DG S+ L Sbjct: 31 LLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRDKDRPTDVISF----AIEDGEDSIDLA 86 Query: 102 ------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 GD+ + +I+ + G F+ + I+HGFLHL GYDH+ +A Sbjct: 87 AFADDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFGYTIVHGFLHLNGYDHIKPDEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LED G+ Sbjct: 147 EMFGIQGKVLEDYGL 161 >gi|325129682|gb|EGC52496.1| hypothetical protein TIGR00043 [Neisseria meningitidis OX99.30304] Length = 171 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMRAAGFPNPYQED 169 >gi|160947548|ref|ZP_02094715.1| hypothetical protein PEPMIC_01483 [Parvimonas micra ATCC 33270] gi|158446682|gb|EDP23677.1| hypothetical protein PEPMIC_01483 [Parvimonas micra ATCC 33270] Length = 156 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 62/106 (58%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +E+S+ F + I+ +N +R IDK T+VLSFP F S+ +LGDI+++ E + Sbjct: 40 IEVSVSFVTNEEIKNINSRFRNIDKETDVLSFPMDFEFSEEGMPFILGDIIISTEKSIEQ 99 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A G + +++L+ H HLLGYDH+++ D +M E+ ++ Sbjct: 100 AQEFGHSIDREILYLVCHSVFHLLGYDHIEESDRIIMRNKEKETMK 145 >gi|237741714|ref|ZP_04572195.1| metal-binding protein [Fusobacterium sp. 4_1_13] gi|294785672|ref|ZP_06750960.1| metalloprotease [Fusobacterium sp. 3_1_27] gi|229429362|gb|EEO39574.1| metal-binding protein [Fusobacterium sp. 4_1_13] gi|294487386|gb|EFG34748.1| metalloprotease [Fusobacterium sp. 3_1_27] Length = 162 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 5/110 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LSL+ TD+ I+ +N EYR D PT+V+SF A+ ++ + LGDI+++ E +E Sbjct: 50 LSLLLTDNENIQIINREYRDKDAPTDVISF--AYHETEDFNIGPYDTLGDIIISLERVEE 107 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A FE +++ HG LH+LGYDH++++D +M E +IL G Sbjct: 108 QAGEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMRKREEAILSSFG 157 >gi|325127628|gb|EGC50544.1| hypothetical protein TIGR00043 [Neisseria meningitidis N1568] Length = 171 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGY----RRADISLILLDEEAARDYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 ETLPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|319400906|gb|EFV89125.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909] Length = 155 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 8/122 (6%) Query: 51 KENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLG 102 KENI ELS+ F D I+ +N YR DK T+V+SF +D +LG Sbjct: 31 KENIHNDAELSVTFVDKEEIQNINKVYRDKDKVTDVISFALEEDEPEIDFNDFEIPRVLG 90 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI++ ++ + +A G FE L L +HGFLHLLGYDH++D D M G + +IL + Sbjct: 91 DIIICTDVAKEQAESYGHSFERELGFLALHGFLHLLGYDHMNDNDEKEMFGRQDAILNEF 150 Query: 163 GI 164 G+ Sbjct: 151 GL 152 >gi|253577936|ref|ZP_04855208.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850254|gb|EES78212.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 164 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 15/126 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDG--------------CSSL 99 +++LV TD+ IE +N E+R I +PT+VLSFP F + G L Sbjct: 38 AQVNLVLTDNEEIERVNTEFRDIARPTDVLSFPMIPFETPAGYDIVEEDESYFDLDTDEL 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDI+++ + + +A G L+ H LHLLGYDH+ +A VME + L Sbjct: 98 LLGDIMISVDKVFAQAEEYGHSVTREFCFLVAHSMLHLLGYDHMTPGEATVMEAKQAKAL 157 Query: 160 EDLGIN 165 E+LGI Sbjct: 158 EELGIT 163 >gi|310643041|ref|YP_003947799.1| metalloprotease [Paenibacillus polymyxa SC2] gi|309247991|gb|ADO57558.1| Putative metalloprotease [Paenibacillus polymyxa SC2] Length = 165 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 16/124 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---------------PTAFASSDGCSSLM 100 E++L F + +I LN +YRGID+PT+VLSF PT + + Sbjct: 41 EVALTFVNDDQIHELNRDYRGIDRPTDVLSFAMKETLDEELEIIYEPTEDNPLNDVPDV- 99 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDI+++ + + ++ G E + L +HGFLHLLGYDH DD M G + ++L Sbjct: 100 LGDIIISVQTAQAQSEEYGHSIEREIGFLFVHGFLHLLGYDHQDDASEAEMMGKQEAVLA 159 Query: 161 DLGI 164 +G+ Sbjct: 160 QVGL 163 >gi|296157339|ref|ZP_06840175.1| protein of unknown function UPF0054 [Burkholderia sp. Ch1-1] gi|295892675|gb|EFG72457.1| protein of unknown function UPF0054 [Burkholderia sp. Ch1-1] Length = 153 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 4/114 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ F D+ TLN YRG D TNVL+F A+A S+ + GD++L ++E EA Sbjct: 44 ELTVRFVDAEEGRTLNRTYRGKDYSTNVLTF--AYAESE--DDPVTGDLILCCPVVEKEA 99 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK H HL++HG LH GYDH +++A ME +E IL LG DPY+ Sbjct: 100 AEQGKPLLAHYAHLLVHGTLHAQGYDHEAEEEAEEMEAIETEILGKLGFPDPYQ 153 >gi|167561618|ref|ZP_02354534.1| hypothetical protein BoklE_03576 [Burkholderia oklahomensis EO147] Length = 262 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDE+ + K ++ + F + + ++ F + Sbjct: 113 PELDLAVQ-----YGDEVGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 164 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 165 ALNNSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 220 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 221 LLVHGALHAQGYDHERGDEDAAEMEALEIDILAKLGFPNPY 261 >gi|83589459|ref|YP_429468.1| hypothetical protein Moth_0595 [Moorella thermoacetica ATCC 39073] gi|123524940|sp|Q2RKW4|RRMF_MOOTA RecName: Full=Probable rRNA maturation factor gi|83572373|gb|ABC18925.1| Protein of unknown function UPF0054 [Moorella thermoacetica ATCC 39073] Length = 156 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSDGCSSLMLGDIVLAYEII 111 SL D I+ LN YRG+D PT+VLSF P A +D +LGDI+++ Sbjct: 42 SLTLVDDAAIKELNRTYRGVDAPTDVLSFALEEKGPDEPAYADPGGDKLLGDIIISVPTA 101 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G L L +HGFLHLLGYDH A ME + +IL +G+ Sbjct: 102 VRQAGEYGHSLARELAFLAVHGFLHLLGYDHDTAAGAADMEARQEAILAGVGLR 155 >gi|18311000|ref|NP_562934.1| putative metalloprotease [Clostridium perfringens str. 13] gi|26006929|sp|Q8XIU5|RRMF_CLOPE RecName: Full=Probable rRNA maturation factor gi|18145682|dbj|BAB81724.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 168 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 18/144 (12%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC- 96 + V + + K VKE+ E+SLVF D+ I +N E RGIDK T+VLSFP D Sbjct: 22 EEVISFVLKEEKVKED-CEVSLVFVDNEEIRGINNETRGIDKATDVLSFPMIDYPEDKVY 80 Query: 97 ----------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 L+LGDIVL+ E + ++ FE +L+ H LHLLGY Sbjct: 81 KDVYLEHEFDKCYFDGDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGY 140 Query: 141 DHVDDKDACVMEGLERSILEDLGI 164 DH+++++ M G E +L L I Sbjct: 141 DHMEEEEKARMRGREEELLGKLNI 164 >gi|167568853|ref|ZP_02361727.1| hypothetical protein BoklC_03336 [Burkholderia oklahomensis C6786] Length = 262 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDE+ + K ++ + F + + ++ F + Sbjct: 113 PELDLAVQ-----YGDEVGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 164 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 165 ALNNSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 220 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 221 LLVHGALHAQGYDHERGDEDAAEMEALEIDILAKLGFPNPY 261 >gi|110801968|ref|YP_699299.1| putative metalloprotease [Clostridium perfringens SM101] gi|122956576|sp|Q0SRF8|RRMF_CLOPS RecName: Full=Probable rRNA maturation factor gi|110682469|gb|ABG85839.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens SM101] Length = 168 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 18/144 (12%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC- 96 + V + + K VKE+ E+SLVF D+ I +N E RGIDK T+VLSFP D Sbjct: 22 EEVISFVLKEEKVKED-CEVSLVFVDNEEIRGINNETRGIDKTTDVLSFPMIDYPEDKVY 80 Query: 97 ----------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 L+LGDIVL+ E + ++ FE +L+ H LHLLGY Sbjct: 81 KDVYLEHEFDKCYFDGDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGY 140 Query: 141 DHVDDKDACVMEGLERSILEDLGI 164 DH+++++ M G E +L L I Sbjct: 141 DHMEEEEKARMRGREEELLGKLNI 164 >gi|325478360|gb|EGC81475.1| translation metalloprotein YbeY [Anaerococcus prevotii ACS-065-V-Col13] Length = 448 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 66/113 (58%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 E+ E+S+ F D I LN E+RG+D+PT+VLSFP +MLGDIV+ ++ Sbjct: 33 EDNYEVSITFVDRKEIHKLNKEFRGVDRPTDVLSFPLDDEILIPNEDIMLGDIVICLDVA 92 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A G +++L H LHLLGYDH+++ + M E+ ++++L + Sbjct: 93 KDQAIEFGHSLRREVMYLTCHSTLHLLGYDHMEEDEKREMRTREKEVMKNLRV 145 >gi|296327852|ref|ZP_06870388.1| metal dependent hydrolase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154986|gb|EFG95767.1| metal dependent hydrolase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 162 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 5/110 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LSL+ TD+ I+ +N EYR D PT+V+SF A+ ++ + LGDI+++ E +E Sbjct: 50 LSLLLTDNENIQVINREYRDKDAPTDVISF--AYHETEDFNIGPYDTLGDIIISLERVEE 107 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A+ FE +++ HG LH+LGYDH++++D +M E +IL G Sbjct: 108 QASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKLMREREEAILSSFG 157 >gi|254796633|ref|YP_003081469.1| hypothetical protein NRI_0240 [Neorickettsia risticii str. Illinois] gi|254589870|gb|ACT69232.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 143 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 3/97 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E S+V TD I TLN YRG D PTNVLSF +++ ++G+++L+++ + IE Sbjct: 35 AEFSVVLTDDEFIRTLNKNYRGKDAPTNVLSFN---YTNEQIGIGIIGEVILSFDRLVIE 91 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 A +FE+HL+H+ IHG LH+LGYDH DK+ M Sbjct: 92 ALENEIKFEDHLLHMFIHGVLHVLGYDHSSDKETLAM 128 >gi|295677635|ref|YP_003606159.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1002] gi|295437478|gb|ADG16648.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1002] Length = 153 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 4/114 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ F D+ TLN YRG D TNVL+F A+A S+ + GD++L ++E EA Sbjct: 44 ELTVRFVDAEEGRTLNRTYRGKDYATNVLTF--AYAESE--DDPVTGDLILCCPVVEKEA 99 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK H HL++HG LH GYDH +++A ME +E IL LG DPY+ Sbjct: 100 AEQGKPLAAHYAHLLVHGTLHAQGYDHEVEEEAEEMEAIETEILARLGFPDPYQ 153 >gi|65321675|ref|ZP_00394634.1| COG0319: Predicted metal-dependent hydrolase [Bacillus anthracis str. A2012] Length = 156 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ LE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEXLEAFGLG 155 >gi|289578131|ref|YP_003476758.1| hypothetical protein Thit_0920 [Thermoanaerobacter italicus Ab9] gi|289527844|gb|ADD02196.1| protein of unknown function UPF0054 [Thermoanaerobacter italicus Ab9] Length = 159 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASS-------DGCSSLM--LGDI 104 VE+S+ F D+ I LN YRGIDKPT+VLSFP A F + D S + +GDI Sbjct: 38 VEVSVSFVDNEEIRKLNKYYRGIDKPTDVLSFPLAEFEETYDKIEKIDQESEEVQPIGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 V++ E ++ G FE + +L H LHLLGYDH +++ +M E I+ L I Sbjct: 98 VISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDHQTEEERKIMRQKEEEIMARLNI 157 Query: 165 N 165 Sbjct: 158 R 158 >gi|312113952|ref|YP_004011548.1| hypothetical protein Rvan_1179 [Rhodomicrobium vannielii ATCC 17100] gi|311219081|gb|ADP70449.1| protein of unknown function UPF0054 [Rhodomicrobium vannielii ATCC 17100] Length = 193 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 8/165 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 R+ I++E+ W + + L E + K V+ + + E+ +S+ ++ + Sbjct: 26 RIGTDISIEDDRW---VSVDGL-EDLIPKLVAETLREAGLTPEDAC-VSVALMSGEQVRS 80 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN +R D TNVLSFP+ A+ LGD+ L+Y+ + EA K H Sbjct: 81 LNKVFRSKDADTNVLSFPSPEAARSAVLEDEPAFLGDVALSYDAVVGEAQAQAKTPLQHT 140 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+ HG LHL+G+DH D DA ME ER IL GI DPY D Sbjct: 141 AHLVAHGVLHLVGFDHEADADADAMEAAERVILARFGIPDPYRDD 185 >gi|167835504|ref|ZP_02462387.1| hypothetical protein Bpse38_03366 [Burkholderia thailandensis MSMB43] Length = 268 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 119 PELDLAV-----QYGDEIGDAQRKPLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 170 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL I+E EA GK H H Sbjct: 171 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPIVEKEAREQGKTLVAHYAH 226 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 227 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 267 >gi|323527297|ref|YP_004229450.1| hypothetical protein BC1001_2976 [Burkholderia sp. CCGE1001] gi|323384299|gb|ADX56390.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1001] Length = 153 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 75/135 (55%), Gaps = 7/135 (5%) Query: 38 KAVSNLISKGYFVKENIV---ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 KA+ + G ++K + EL++ F D+ TLN YRG D TNVL+F A+A S+ Sbjct: 23 KALLPRATVGGWIKAALFADGELTVRFVDAEEGRTLNRTYRGKDYSTNVLTF--AYAESE 80 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 + GD++L ++E EA GK H HL++HG LH GYDH +++A ME L Sbjct: 81 --DDPVTGDLILCCPVVEKEAAEQGKPLVAHYAHLLVHGTLHAQGYDHEVEEEAEEMEAL 138 Query: 155 ERSILEDLGINDPYE 169 E IL LG DPY Sbjct: 139 ETEILGKLGFPDPYR 153 >gi|312127664|ref|YP_003992538.1| hypothetical protein Calhy_1452 [Caldicellulosiruptor hydrothermalis 108] gi|311777683|gb|ADQ07169.1| protein of unknown function UPF0054 [Caldicellulosiruptor hydrothermalis 108] Length = 158 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 14/161 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +++ N I F++E E+S++ D++ I+ LN Sbjct: 1 MKIFIQN--QQDKVDVDQHISKIIEESIVNTIK--VFLEEENFEISVLIVDNNFIKELNR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC---------SSLMLGDIVLAYEIIEIEANVLGKEFE 123 YR ++K T+VLSFP F +G + LGDIV++ E +A G E Sbjct: 57 NYRNVNKETDVLSFPI-FEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAKEFGHSLE 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 116 REVAYLTVHSVLHLLGFDHIEEDDRKVMRKYEEQILDSMGL 156 >gi|237810909|ref|YP_002895360.1| putative conserved hypothetical protein [Burkholderia pseudomallei MSHR346] gi|237506403|gb|ACQ98721.1| putative conserved hypothetical protein [Burkholderia pseudomallei MSHR346] Length = 274 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 125 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 176 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 177 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 232 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 233 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 273 >gi|15613926|ref|NP_242229.1| hypothetical protein BH1363 [Bacillus halodurans C-125] gi|20140844|sp|Q9KD56|RRMF_BACHD RecName: Full=Probable rRNA maturation factor gi|10173979|dbj|BAB05082.1| BH1363 [Bacillus halodurans C-125] Length = 159 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 7/123 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLG 102 + E ELSL F I+ LN +YRG D+PT+V+SF + + +LG Sbjct: 35 LAEGTYELSLSFVSDEEIQELNRDYRGKDQPTDVISFALNEVGEGEQPVEPEAGTPNLLG 94 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI+++ + +A G FE L LI+HGFLHLLGYDH+ + + M + IL Sbjct: 95 DIIVSIPRCQEQAEAYGHSFERELAFLIVHGFLHLLGYDHMSEDEEKKMFMRQEDILTAY 154 Query: 163 GIN 165 G+ Sbjct: 155 GLT 157 >gi|315282362|ref|ZP_07870789.1| putative metalloprotease [Listeria marthii FSL S4-120] gi|313613994|gb|EFR87711.1| putative metalloprotease [Listeria marthii FSL S4-120] Length = 161 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 12/138 (8%) Query: 40 VSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------- 89 V N++ + GY E ELSL FT + I +N EYR D+ T+V+SF Sbjct: 23 VENILQFAAGYLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETE 82 Query: 90 --FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + D + MLGDI+++ E E +A G L L +HG LHLLGYDH++ + Sbjct: 83 IDWGEFDLETPRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDE 142 Query: 148 ACVMEGLERSILEDLGIN 165 VM GL++ +L+ G+ Sbjct: 143 EKVMFGLQKEVLDAYGLE 160 >gi|222529265|ref|YP_002573147.1| hypothetical protein Athe_1274 [Caldicellulosiruptor bescii DSM 6725] gi|254800021|sp|B9MRS0|RRMF_ANATD RecName: Full=Probable rRNA maturation factor gi|222456112|gb|ACM60374.1| protein of unknown function UPF0054 [Caldicellulosiruptor bescii DSM 6725] Length = 158 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +++ N I F++E E+S++ D+ I+ LN Sbjct: 1 MKIFIQN--QQDKVDIDQHISKIIEESIVNTIK--VFLEEENFEISVLIVDNSFIKELNR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC---------SSLMLGDIVLAYEIIEIEANVLGKEFE 123 YR ++K T+VLSFP F +G + LGDIV++ E +A G E Sbjct: 57 NYRNVNKETDVLSFPI-FEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAKEFGHSLE 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 116 REIAYLTVHSVLHLLGFDHIEEDDRKVMREYEEQILQSMGL 156 >gi|126219079|gb|ABN82585.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 668] Length = 274 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 125 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 176 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 177 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 232 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 233 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 273 >gi|325956929|ref|YP_004292341.1| metalloprotease [Lactobacillus acidophilus 30SC] gi|325333494|gb|ADZ07402.1| Metalloprotease [Lactobacillus acidophilus 30SC] gi|327183709|gb|AEA32156.1| metalloprotease [Lactobacillus amylovorus GRL 1118] Length = 174 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 L++K K+N +E+S+ F D R +N +YR D+PT+V+SF A DG S+ L Sbjct: 31 LLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRDKDRPTDVISF----AIEDGEDSIDLA 86 Query: 102 ------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 GD+ + +I+ + G F+ + ++HGFLHL GYDH+ +A Sbjct: 87 AFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFGYTVVHGFLHLNGYDHIKPDEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LED G+ Sbjct: 147 EMFGIQGKVLEDYGL 161 >gi|170693392|ref|ZP_02884551.1| protein of unknown function UPF0054 [Burkholderia graminis C4D1M] gi|170141547|gb|EDT09716.1| protein of unknown function UPF0054 [Burkholderia graminis C4D1M] Length = 153 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 66/114 (57%), Gaps = 4/114 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ F D+ TLN YRG D TNVL+F A+A S+ + GD++L ++E EA Sbjct: 44 ELTVRFVDAEEGRTLNRTYRGKDYSTNVLTF--AYAESE--DDPVTGDLILCCPVVEKEA 99 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK H HL++HG LH GYDH +++A ME LE IL LG DPY Sbjct: 100 AEQGKPLVAHYAHLLVHGTLHAQGYDHEVEEEAEEMEALETEILGKLGFPDPYR 153 >gi|167822819|ref|ZP_02454290.1| hypothetical protein Bpseu9_04036 [Burkholderia pseudomallei 9] Length = 273 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 124 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDTQFTVRFVGADEGR 175 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 176 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 231 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 232 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 272 >gi|160939164|ref|ZP_02086515.1| hypothetical protein CLOBOL_04058 [Clostridium bolteae ATCC BAA-613] gi|158438127|gb|EDP15887.1| hypothetical protein CLOBOL_04058 [Clostridium bolteae ATCC BAA-613] Length = 165 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 16/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E++++ TD+ I+ +N E+R ID PT+VLSFP S Sbjct: 38 AEVNVILTDNDAIQEINREHRQIDAPTDVLSFPMVDYESPSDFDHVEEAVEDYFNPETGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LMLGDIV++ + +E +A G L L H LHL GYDH++D + VME ++ I Sbjct: 98 LMLGDIVISVDKVEEQAEKYGHSQTRELAFLTAHSMLHLFGYDHMEDGERLVMEEKQKEI 157 Query: 159 LEDLG 163 LE G Sbjct: 158 LETRG 162 >gi|39939110|ref|NP_950876.1| hypothetical protein PAM_624 [Onion yellows phytoplasma OY-M] gi|59799050|sp|Q6YPV1|RRMF_ONYPE RecName: Full=Probable rRNA maturation factor gi|39722219|dbj|BAD04709.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 146 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 61/109 (55%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + L+F + +I+ LN YR + PT+VLSFP G LGD+ +++ +++A Sbjct: 33 MHLIFVTNEKIQELNSFYRQKNYPTDVLSFPNDLTFFAGLEDNSLGDVFISFSKAQVQAQ 92 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L +HGFLHL GY H +++ +M L+ IL+++G+N Sbjct: 93 TAKHSLEREIAFLAVHGFLHLKGYQHRTEEEFQIMLALQEKILQNVGLN 141 >gi|167718180|ref|ZP_02401416.1| hypothetical protein BpseD_04113 [Burkholderia pseudomallei DM98] gi|167901393|ref|ZP_02488598.1| hypothetical protein BpseN_03886 [Burkholderia pseudomallei NCTC 13177] Length = 273 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 124 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 175 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 176 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 231 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 232 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 272 >gi|228993242|ref|YP_001057758.2| unkown domain/putative metalloprotease fusion protein [Burkholderia pseudomallei 668] Length = 273 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 124 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 175 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 176 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 231 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 232 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 272 >gi|261378228|ref|ZP_05982801.1| putative metalloprotease [Neisseria cinerea ATCC 14685] gi|269145304|gb|EEZ71722.1| putative metalloprotease [Neisseria cinerea ATCC 14685] Length = 171 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 23/152 (15%) Query: 37 AKAVSNLISKGYFVK---------ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF- 86 A + +NL SK F + ++SL+ D N +YRG D TNVLSF Sbjct: 24 ASSAANLPSKRDFYRWAWSALKDEYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFA 83 Query: 87 -------PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 P F SDG + GD+V+ +++ EA GK E H HL IHG LHL+G Sbjct: 84 LNEGEILPDQF--SDG----LYGDLVICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMG 137 Query: 140 YDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 YDH++D +A +ME E ++ G +PY+ D Sbjct: 138 YDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 169 >gi|326318913|ref|YP_004236585.1| hypothetical protein Acav_4129 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375749|gb|ADX48018.1| protein of unknown function UPF0054 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 152 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D+ + LN EYR D TNVL+F A +++ D+VL ++E E Sbjct: 42 AEITVRIVDAEEGQALNREYRHKDYATNVLTFDYA------QEPVVMADLVLCAPVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A K H HL++HG LH G+DH +DA ME E +I+++LG DPY Sbjct: 96 AREQNKALHEHYAHLLVHGTLHAQGWDHETSAEDADEMEAYETAIMQELGFADPY 150 >gi|316985396|gb|EFV64344.1| conserved hypothetical protein [Neisseria meningitidis H44/76] Length = 209 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 91 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 150 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 151 KEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPYQED 209 >gi|313903261|ref|ZP_07836653.1| protein of unknown function UPF0054 [Thermaerobacter subterraneus DSM 13965] gi|313466349|gb|EFR61871.1| protein of unknown function UPF0054 [Thermaerobacter subterraneus DSM 13965] Length = 177 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 15/128 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---------------AFASSDGCSSL 99 VE+SL F D I+ LN YRG D PT+VLSFP + G + Sbjct: 50 VEISLTFVDDVAIQELNRRYRGKDAPTDVLSFPQLEPDEVAALVRAPAVPAQVAPGPEPV 109 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGD+V++ E +A G + + +L+ HG LHLLGYDH D + M + L Sbjct: 110 PLGDVVISLERAAAQARDYGHSLDREVGYLLAHGVLHLLGYDHPDAERERRMHEKAEAAL 169 Query: 160 EDLGINDP 167 D G++ P Sbjct: 170 ADCGLSRP 177 >gi|303232221|ref|ZP_07318920.1| translation metalloprotein YbeY [Atopobium vaginae PB189-T1-4] gi|302481631|gb|EFL44692.1| translation metalloprotein YbeY [Atopobium vaginae PB189-T1-4] Length = 208 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 11/117 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAY 108 + +S+V D I +N E+RG DKPT+V+S + A+ + C LGDI+LA Sbjct: 81 ISISIVTID--HIHDINREFRGQDKPTDVISIECERPDDPSLAAGEPCE---LGDIILAS 135 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E I +A+ G + ++ L+IH LHLLGYDH++D DA VME LE +L ++G Sbjct: 136 EYIAHQADDFGMDHQDECRLLLIHAMLHLLGYDHLNDADAEVMEALEDRLLIEVGTT 192 >gi|264680424|ref|YP_003280334.1| metal-dependent hydrolase [Comamonas testosteroni CNB-2] gi|262210940|gb|ACY35038.1| putative metal-dependent hydrolase [Comamonas testosteroni CNB-2] Length = 152 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D+ LN EYR D TNVL+F + ++ D+VL ++E E Sbjct: 42 AEITVRIVDAEEGRKLNREYRKKDYATNVLTFDYQQEPT------VMADLVLCAPVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A K E H HL++HG LH G+DH ++DA ME E I++++G DPY Sbjct: 96 AQEQNKSLEEHYAHLLVHGTLHAQGWDHETSEEDAEEMEAYETDIMKEMGYEDPY 150 >gi|226196767|ref|ZP_03792347.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pakistan 9] gi|225931298|gb|EEH27305.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pakistan 9] Length = 274 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 125 PELDLAVQ-----YGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDTQFTVRFVGADEGR 176 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 177 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 232 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 233 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 273 >gi|148657696|ref|YP_001277901.1| hypothetical protein RoseRS_3596 [Roseiflexus sp. RS-1] gi|172048089|sp|A5UZ98|RRMF_ROSS1 RecName: Full=Probable rRNA maturation factor gi|148569806|gb|ABQ91951.1| protein of unknown function UPF0054 [Roseiflexus sp. RS-1] Length = 160 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 9/118 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAY 108 VE+ ++ TD ++ LN YRG+D PT+VLSF A A D + LGDI +++ Sbjct: 42 VEVGILITDDAGLQRLNQAYRGVDAPTDVLSF--AEADDDSAFVRPPDAPRYLGDIAISW 99 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGIN 165 E + +A G E L L++HG LHLLGYDH D M E IL LG++ Sbjct: 100 ERVVAQAAEYGHSRERELAFLVVHGMLHLLGYDHERSPADEADMRAREEEILRALGLS 157 >gi|139439607|ref|ZP_01773020.1| Hypothetical protein COLAER_02047 [Collinsella aerofaciens ATCC 25986] gi|133774948|gb|EBA38768.1| Hypothetical protein COLAER_02047 [Collinsella aerofaciens ATCC 25986] Length = 121 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/98 (44%), Positives = 62/98 (63%), Gaps = 3/98 (3%) Query: 70 LNFEYRGIDKPTNVLSFP--TAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN E+RGID+ T+VLSF +AF +L LGDI+LA ++I +A G + Sbjct: 4 LNHEWRGIDRTTDVLSFECDSAFDEDIPADETLELGDIILAPQVIARQAPGFGNSPADEC 63 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++HG LHLLGYDH++D +A VME E +IL DL + Sbjct: 64 RLMLVHGMLHLLGYDHIEDDEAEVMEAREDAILRDLAL 101 >gi|53724679|ref|YP_102057.1| unkown domain/metalloprotease fusion protein [Burkholderia mallei ATCC 23344] gi|228969302|ref|YP_332300.2| unkown domain/putative metalloprotease fusion protein [Burkholderia pseudomallei 1710b] gi|229008326|ref|YP_994019.2| unkown domain/putative metalloprotease fusion protein [Burkholderia mallei SAVP1] gi|229027669|ref|YP_001081961.2| unkown domain/putative metalloprotease fusion protein [Burkholderia mallei NCTC 10247] gi|229780993|ref|YP_001028317.2| unkown domain/putative metalloprotease fusion protein [Burkholderia mallei NCTC 10229] gi|254208717|ref|ZP_04915065.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei JHU] gi|52428102|gb|AAU48695.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei ATCC 23344] gi|147750593|gb|EDK57662.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei JHU] Length = 270 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 121 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDTQFTVRFVGADEGR 172 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 173 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 228 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 229 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 269 >gi|307730934|ref|YP_003908158.1| hypothetical protein BC1003_2914 [Burkholderia sp. CCGE1003] gi|307585469|gb|ADN58867.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1003] Length = 153 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 66/114 (57%), Gaps = 4/114 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ F D+ TLN YRG D TNVL+F A+A S+ + GD++L ++E EA Sbjct: 44 ELTVRFVDAEEGRTLNRTYRGKDYSTNVLTF--AYAESE--DDPVTGDLILCCPVVEKEA 99 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK H HL++HG LH GYDH +++A ME LE IL LG DPY Sbjct: 100 AEQGKPLVAHYAHLLVHGTLHAQGYDHEAEEEAEEMEALETEILGKLGFADPYR 153 >gi|332527513|ref|ZP_08403565.1| hypothetical protein RBXJA2T_16287 [Rubrivivax benzoatilyticus JA2] gi|332111920|gb|EGJ11898.1| hypothetical protein RBXJA2T_16287 [Rubrivivax benzoatilyticus JA2] Length = 147 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 6/112 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +++ D TLN +YRG D TNVL+F ++ D+VL ++E EA Sbjct: 39 IAVRIVDEDEGRTLNRDYRGKDYATNVLTFDYEHEPE------VVADLVLCAPVVEREAA 92 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G E H HL++HG LH G+DH DD +A ME E +L LG DPY Sbjct: 93 EQGVTLEAHYAHLLVHGTLHAQGWDHEDDGEAEAMEARETELLAALGFADPY 144 >gi|167814343|ref|ZP_02446023.1| hypothetical protein Bpse9_04323 [Burkholderia pseudomallei 91] gi|167844394|ref|ZP_02469902.1| hypothetical protein BpseB_03824 [Burkholderia pseudomallei B7210] gi|167892907|ref|ZP_02480309.1| hypothetical protein Bpse7_04011 [Burkholderia pseudomallei 7894] gi|167909622|ref|ZP_02496713.1| hypothetical protein Bpse112_03959 [Burkholderia pseudomallei 112] gi|167917637|ref|ZP_02504728.1| hypothetical protein BpseBC_03726 [Burkholderia pseudomallei BCC215] gi|229269498|ref|YP_107301.2| unkown domain/putative metalloprotease fusion protein [Burkholderia pseudomallei K96243] gi|229335614|ref|YP_001065003.2| putative metalloprotease [Burkholderia pseudomallei 1106a] gi|254187673|ref|ZP_04894185.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pasteur 52237] gi|254196964|ref|ZP_04903388.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei S13] gi|254296215|ref|ZP_04963672.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 406e] gi|157806091|gb|EDO83261.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 406e] gi|157935353|gb|EDO91023.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pasteur 52237] gi|169653707|gb|EDS86400.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei S13] Length = 270 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 121 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 172 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 173 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 228 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 229 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 269 >gi|217420118|ref|ZP_03451624.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 576] gi|242316823|ref|ZP_04815839.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1106b] gi|52208729|emb|CAH34665.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|126226010|gb|ABN89550.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1106a] gi|217397422|gb|EEC37438.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 576] gi|242140062|gb|EES26464.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1106b] Length = 271 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 122 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 173 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 174 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 229 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 230 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 270 >gi|121534218|ref|ZP_01666043.1| protein of unknown function UPF0054 [Thermosinus carboxydivorans Nor1] gi|121307321|gb|EAX48238.1| protein of unknown function UPF0054 [Thermosinus carboxydivorans Nor1] Length = 155 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 5/131 (3%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-- 96 AV N ++ Y + E E+S+V D I LN +YR D PT+VLSF Sbjct: 24 AVLNKAAEVYGLSEQ-TEVSIVLVDDEYIFELNRQYRDKDVPTDVLSFALNEGDEPAIIN 82 Query: 97 --SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 ++++LGDIV++ E +A G E L +L +HG LHLLGYDH +++ M Sbjct: 83 DPAAMLLGDIVISLETAARQAEEFGHGLERELAYLTLHGMLHLLGYDHETEEERVKMRNE 142 Query: 155 ERSILEDLGIN 165 E IL LGI Sbjct: 143 EEYILSQLGIT 153 >gi|88608284|ref|YP_506143.1| hypothetical protein NSE_0249 [Neorickettsia sennetsu str. Miyayama] gi|123492190|sp|Q2GEF3|RRMF_NEOSM RecName: Full=Probable rRNA maturation factor gi|88600453|gb|ABD45921.1| conserved hypothetical protein TIGR00043 [Neorickettsia sennetsu str. Miyayama] Length = 143 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 3/97 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E S+V TD I TLN YRG D PTNVLSF +++ ++G+++L+++ + IE Sbjct: 35 AEFSVVLTDDEFIRTLNKSYRGRDTPTNVLSFN---YTNEQIGIGIIGEVILSFDRLVIE 91 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 A +FE+HL+H+ IHG LH+LGYDH D++ M Sbjct: 92 ALENEIKFEDHLLHMFIHGVLHVLGYDHSSDRETLAM 128 >gi|238562536|ref|ZP_00440243.2| putative conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|251767812|ref|ZP_02268483.2| conserved hypothetical protein TIGR00043 [Burkholderia mallei PRL-20] gi|254177000|ref|ZP_04883657.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei ATCC 10399] gi|254203741|ref|ZP_04910101.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei FMH] gi|254260739|ref|ZP_04951793.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1710a] gi|254360231|ref|ZP_04976501.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei 2002721280] gi|76578267|gb|ABA47742.1| conserved hypothetical protein TIGR00043, putative [Burkholderia pseudomallei 1710b] gi|121228785|gb|ABM51303.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei SAVP1] gi|124294661|gb|ABN03930.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei NCTC 10229] gi|126243959|gb|ABO07052.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei NCTC 10247] gi|147745253|gb|EDK52333.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei FMH] gi|148029471|gb|EDK87376.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei 2002721280] gi|160698041|gb|EDP88011.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei ATCC 10399] gi|238522405|gb|EEP85849.1| putative conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|243061633|gb|EES43819.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei PRL-20] gi|254219428|gb|EET08812.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1710a] Length = 271 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 122 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDTQFTVRFVGADEGR 173 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 174 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 229 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 230 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 270 >gi|323440468|gb|EGA98180.1| hypothetical protein SAO11_0764 [Staphylococcus aureus O11] gi|323443242|gb|EGB00860.1| hypothetical protein SAO46_0891 [Staphylococcus aureus O46] Length = 155 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 5/119 (4%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-GCSSL----MLGDIVL 106 E+ ELS+ F D I+ +N YR DK T+V+SF D S L +LGDI++ Sbjct: 35 EDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPDIDYSDLDIPRVLGDIII 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +AN G FE L L +HGFLHLLGYDH+ + D M G + +IL G+ Sbjct: 95 CTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLT 153 >gi|168204743|ref|ZP_02630748.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens E str. JGS1987] gi|170663561|gb|EDT16244.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens E str. JGS1987] Length = 168 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 18/145 (12%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC- 96 + V + + K VKE+ E+SLVF D+ I +N E RGID+ T+VLSFP D Sbjct: 22 EEVISFVLKEEKVKED-CEVSLVFVDNEEIRGINSETRGIDRATDVLSFPMIDYPEDKVY 80 Query: 97 ----------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 L+LGDIVL+ E + ++ FE +L+ H LHLLGY Sbjct: 81 KDVYLEHEFDKCYFDGDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGY 140 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH+++++ M G E +L L I Sbjct: 141 DHMEEEEKARMRGREEELLGKLNIT 165 >gi|15676444|ref|NP_273583.1| hypothetical protein NMB0538 [Neisseria meningitidis MC58] gi|26006912|sp|Q9K0P7|RRMF_NEIMB RecName: Full=Probable rRNA maturation factor gi|7225763|gb|AAF40967.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|325139809|gb|EGC62342.1| putative metalloprotease [Neisseria meningitidis CU385] gi|325200774|gb|ADY96229.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis H44/76] Length = 169 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 111 KEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPYQED 169 >gi|302871925|ref|YP_003840561.1| hypothetical protein COB47_1283 [Caldicellulosiruptor obsidiansis OB47] gi|302574784|gb|ADL42575.1| protein of unknown function UPF0054 [Caldicellulosiruptor obsidiansis OB47] Length = 158 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 10/125 (8%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC---------SSL 99 F++E E+S++ D++ I+ LN YR ++K T+VLSFP F +G + Sbjct: 33 FLQEENFEVSVLIVDNNFIKELNRNYRNVNKETDVLSFPI-FEFKNGQLQEDIVVVEDEI 91 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDIV++ E +A G E + +L +H LHLLG+DH+++ D VM E IL Sbjct: 92 PLGDIVISIEKALQQAKEFGHSLEREVAYLTVHSVLHLLGFDHIEEDDRKVMRKYEEQIL 151 Query: 160 EDLGI 164 + +G+ Sbjct: 152 DSMGL 156 >gi|293607163|ref|ZP_06689505.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814497|gb|EFF73636.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 160 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + ELSL + LN ++R D TNVL+F + + GDIV+ ++ Sbjct: 43 SAAELSLRLVGAAEGRRLNRDFRQRDYATNVLTFEYGVDPA----GVARGDIVMCVPVLV 98 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K H HL IHG LH LGYDH+ +DA M+ LE + L +GI DPY Sbjct: 99 REAREQRKPLLEHAAHLTIHGVLHSLGYDHIKARDAKRMDALETATLAQMGIADPY 154 >gi|56476161|ref|YP_157750.1| hypothetical protein ebA1336 [Aromatoleum aromaticum EbN1] gi|62901202|sp|Q5P762|RRMF_AROAE RecName: Full=Probable rRNA maturation factor gi|56312204|emb|CAI06849.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 154 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 6/99 (6%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG D TNVL+F + S+ + GD+VL ++ EA GK E H HL Sbjct: 61 LNRDYRGKDYATNVLTF--VYDESE----RLAGDLVLCVPVVAREAAEQGKPLEAHFAHL 114 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHL G+DH +A ME LE +L LG +PY Sbjct: 115 IVHGMLHLQGFDHEAPDEAEEMETLETRVLATLGYPNPY 153 >gi|310659081|ref|YP_003936802.1| yqfg [Clostridium sticklandii DSM 519] gi|308825859|emb|CBH21897.1| YqfG [Clostridium sticklandii] Length = 157 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 7/118 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLA 107 VE+SL FT I+ +N ++R IDK T+VLSFP + +S + LGDIV++ Sbjct: 39 VEISLTFTTDELIKEINSKHRNIDKATDVLSFPMYEKQELSDINTSISNFPVALGDIVVS 98 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E +A G FE + L+ H HLLGYDH+ ++ +M + +LE LGIN Sbjct: 99 VERTFSQAEEYGHSFEREMAFLVCHSMFHLLGYDHMTKQEEGLMMEKQNKVLEALGIN 156 >gi|254671890|emb|CBA04156.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|308388724|gb|ADO31044.1| hypothetical protein NMBB_0581 [Neisseria meningitidis alpha710] Length = 251 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 131 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 190 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 191 KEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPYQED 249 >gi|268319371|ref|YP_003293027.1| hypothetical protein FI9785_888 [Lactobacillus johnsonii FI9785] gi|262397746|emb|CAX66760.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785] Length = 175 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 13/155 (8%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + DE+ + + +SNL+ +K KEN E+S+ F S +I +N +YRG D+ Sbjct: 8 FNDEVTFLKDSDKDWISWISNLLLSAKKEIHKENAQEMSINFVSSEKIHEINKKYRGKDR 67 Query: 80 PTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 PT+V+SF +AF S D +GD+ L E+I+ + F + Sbjct: 68 PTDVISFAIEDGLDEDFMSAF-SDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFGYT 126 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++HG+LHL GYDH++D +A +M G++ +L + G+ Sbjct: 127 LVHGYLHLNGYDHIEDDEAKIMFGIQGKVLREYGL 161 >gi|253997234|ref|YP_003049298.1| hypothetical protein Mmol_1868 [Methylotenera mobilis JLW8] gi|253983913|gb|ACT48771.1| protein of unknown function UPF0054 [Methylotenera mobilis JLW8] Length = 145 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 6/114 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D+ ++LN YRG D TNVL+FP ++GDI++ ++ E Sbjct: 35 TEVTIRIVDAAEGQSLNNTYRGKDYATNVLTFPLTE------EPYLMGDIIICAPVVAAE 88 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K E H HL +HG LHL GYDH + A +MEGLE +I+ LG PY Sbjct: 89 AEAQHKSLEAHYAHLTVHGILHLHGYDHEIEAQAELMEGLETAIVTKLGYASPY 142 >gi|134279773|ref|ZP_01766485.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 305] gi|254181743|ref|ZP_04888340.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1655] gi|134248973|gb|EBA49055.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 305] gi|184212281|gb|EDU09324.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1655] Length = 271 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 122 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 173 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 174 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 229 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 230 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 270 >gi|332188741|ref|ZP_08390454.1| uncharacterized UPF0054 family protein [Sphingomonas sp. S17] gi|332011247|gb|EGI53339.1| uncharacterized UPF0054 family protein [Sphingomonas sp. S17] Length = 171 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/122 (46%), Positives = 72/122 (59%), Gaps = 9/122 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TAFASSDGCSSLMLGDIVL 106 +E+S+ T + LN +YR DKPTNVLSFP T +SD ++LGDIVL Sbjct: 46 IEISVRLTSDDEVHALNRQYRQKDKPTNVLSFPMVQPDLIETVTQNSDD-GEVLLGDIVL 104 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 A+ + EA G E H HL++HG LHLLGYDH+ D +A ME +ER L LGI D Sbjct: 105 AHGVCIAEAADRGISPETHATHLLVHGVLHLLGYDHMQDDEAEAMEAIERDALASLGIAD 164 Query: 167 PY 168 PY Sbjct: 165 PY 166 >gi|120612878|ref|YP_972556.1| hypothetical protein Aave_4242 [Acidovorax citrulli AAC00-1] gi|145558826|sp|A1TUZ4|RRMF_ACIAC RecName: Full=Probable rRNA maturation factor gi|120591342|gb|ABM34782.1| protein of unknown function UPF0054 [Acidovorax citrulli AAC00-1] Length = 152 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D+ + LN EYR D TNVL+F A +++ D+VL ++E E Sbjct: 42 AEITVRIVDAEEGQALNREYRHKDYATNVLTFDYA------QEPVVMADLVLCAPVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A K H HL++HG LH G+DH +DA ME E +I+++LG DPY Sbjct: 96 AREQNKALHEHYAHLLVHGTLHAQGWDHETSAEDADEMEAYETAIMQELGFADPY 150 >gi|167037777|ref|YP_001665355.1| putative metalloprotease [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039983|ref|YP_001662968.1| putative metalloprotease [Thermoanaerobacter sp. X514] gi|256751971|ref|ZP_05492841.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus CCSD1] gi|300914073|ref|ZP_07131389.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X561] gi|307724694|ref|YP_003904445.1| hypothetical protein Thet_1564 [Thermoanaerobacter sp. X513] gi|320116192|ref|YP_004186351.1| hypothetical protein Thebr_1395 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687637|sp|B0K706|RRMF_THEPX RecName: Full=Probable rRNA maturation factor gi|238687667|sp|B0KA56|RRMF_THEP3 RecName: Full=Probable rRNA maturation factor gi|166854223|gb|ABY92632.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X514] gi|166856611|gb|ABY95019.1| protein of unknown function UPF0054 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749176|gb|EEU62210.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus CCSD1] gi|300889008|gb|EFK84154.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X561] gi|307581755|gb|ADN55154.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X513] gi|319929283|gb|ADV79968.1| protein of unknown function UPF0054 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 159 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 10/120 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGCSSLM---------LGDI 104 VE+S+ F D+ I LN YRGIDKPT+VLSFP A F + G + +GDI Sbjct: 38 VEVSVSFVDNEEIRKLNKYYRGIDKPTDVLSFPLAEFEDTYGEVEEIEEDSEEVQPIGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 V++ E ++ G FE + +L H LHLLGYDH +++ +M E ++ L I Sbjct: 98 VISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNI 157 >gi|49483818|ref|YP_041042.1| hypothetical protein SAR1647 [Staphylococcus aureus subsp. aureus MRSA252] gi|82751173|ref|YP_416914.1| hypothetical protein SAB1442c [Staphylococcus aureus RF122] gi|257425695|ref|ZP_05602119.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428356|ref|ZP_05604754.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430993|ref|ZP_05607373.1| metalloprotease [Staphylococcus aureus subsp. aureus 68-397] gi|257433681|ref|ZP_05610039.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436595|ref|ZP_05612639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|258423998|ref|ZP_05686880.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282904152|ref|ZP_06312040.1| putative metalloprotease [Staphylococcus aureus subsp. aureus C160] gi|282905979|ref|ZP_06313834.1| metalloprotease [Staphylococcus aureus subsp. aureus Btn1260] gi|282908889|ref|ZP_06316707.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911208|ref|ZP_06319010.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914377|ref|ZP_06322163.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M899] gi|282916840|ref|ZP_06324598.1| metalloprotease [Staphylococcus aureus subsp. aureus D139] gi|282919346|ref|ZP_06327081.1| metalloprotease [Staphylococcus aureus subsp. aureus C427] gi|282924671|ref|ZP_06332339.1| metalloprotease [Staphylococcus aureus subsp. aureus C101] gi|283770646|ref|ZP_06343538.1| metalloprotease [Staphylococcus aureus subsp. aureus H19] gi|283958334|ref|ZP_06375785.1| putative metalloprotease [Staphylococcus aureus subsp. aureus A017934/97] gi|293503451|ref|ZP_06667298.1| metalloprotease [Staphylococcus aureus subsp. aureus 58-424] gi|293510468|ref|ZP_06669174.1| metalloprotease [Staphylococcus aureus subsp. aureus M809] gi|293531008|ref|ZP_06671690.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M1015] gi|295428148|ref|ZP_06820780.1| metalloprotease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590886|ref|ZP_06949524.1| hypothetical metal-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|56749737|sp|Q6GGD0|RRMF_STAAR RecName: Full=Probable rRNA maturation factor gi|123547820|sp|Q2YT09|RRMF_STAAB RecName: Full=Probable rRNA maturation factor gi|49241947|emb|CAG40642.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|82656704|emb|CAI81131.1| conserved hypothetical UPF0054 protein [Staphylococcus aureus RF122] gi|257271389|gb|EEV03535.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275197|gb|EEV06684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278423|gb|EEV09059.1| metalloprotease [Staphylococcus aureus subsp. aureus 68-397] gi|257281774|gb|EEV11911.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257283946|gb|EEV14069.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257845619|gb|EEV69651.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282313506|gb|EFB43901.1| metalloprotease [Staphylococcus aureus subsp. aureus C101] gi|282317156|gb|EFB47530.1| metalloprotease [Staphylococcus aureus subsp. aureus C427] gi|282319327|gb|EFB49679.1| metalloprotease [Staphylococcus aureus subsp. aureus D139] gi|282321558|gb|EFB51883.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M899] gi|282324903|gb|EFB55213.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327153|gb|EFB57448.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331271|gb|EFB60785.1| metalloprotease [Staphylococcus aureus subsp. aureus Btn1260] gi|282595770|gb|EFC00734.1| putative metalloprotease [Staphylococcus aureus subsp. aureus C160] gi|283460793|gb|EFC07883.1| metalloprotease [Staphylococcus aureus subsp. aureus H19] gi|283470848|emb|CAQ50059.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ST398] gi|283790483|gb|EFC29300.1| putative metalloprotease [Staphylococcus aureus subsp. aureus A017934/97] gi|290920276|gb|EFD97342.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M1015] gi|291095117|gb|EFE25382.1| metalloprotease [Staphylococcus aureus subsp. aureus 58-424] gi|291466832|gb|EFF09352.1| metalloprotease [Staphylococcus aureus subsp. aureus M809] gi|295128506|gb|EFG58140.1| metalloprotease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575772|gb|EFH94488.1| hypothetical metal-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|298694852|gb|ADI98074.1| conserved hypothetical UPF0054 protein [Staphylococcus aureus subsp. aureus ED133] gi|312437961|gb|ADQ77032.1| hypothetical metal-binding protein [Staphylococcus aureus subsp. aureus TCH60] gi|315195473|gb|EFU25860.1| hypothetical protein CGSSa00_07380 [Staphylococcus aureus subsp. aureus CGS00] Length = 155 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 5/119 (4%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-GCSSL----MLGDIVL 106 E+ ELS+ F D I+ +N YR DK T+V+SF D S L +LGDI++ Sbjct: 35 EDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPDIDFSGLDIPRVLGDIII 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +AN G FE L L +HGFLHLLGYDH+ + D M G + +IL G+ Sbjct: 95 CTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLT 153 >gi|228902826|ref|ZP_04066971.1| metalloprotease [Bacillus thuringiensis IBL 4222] gi|228967368|ref|ZP_04128403.1| metalloprotease [Bacillus thuringiensis serovar sotto str. T04001] gi|228792403|gb|EEM39970.1| metalloprotease [Bacillus thuringiensis serovar sotto str. T04001] gi|228856835|gb|EEN01350.1| metalloprotease [Bacillus thuringiensis IBL 4222] Length = 154 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 34 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ +++ M G ++ ILE G+ Sbjct: 94 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEEEKEMFGRQKEILEAFGLG 153 >gi|227892552|ref|ZP_04010357.1| metal-dependent hydrolase [Lactobacillus ultunensis DSM 16047] gi|227865673|gb|EEJ73094.1| metal-dependent hydrolase [Lactobacillus ultunensis DSM 16047] Length = 174 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 L++K K N +E+S+ F D R +N +YR D+PT+V+SF A DG S+ L Sbjct: 31 LLAKKEIGKTNNLEMSINFVDEDRSHEINLKYRDKDRPTDVISF----AIEDGEDSIDLA 86 Query: 102 ------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 GD+ + +I+ + G F+ + ++HGFLHL GYDH+ ++A Sbjct: 87 AFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFGYTVVHGFLHLNGYDHIKPEEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LED G+ Sbjct: 147 EMFGIQGKVLEDYGL 161 >gi|110800128|ref|YP_696698.1| putative metalloprotease [Clostridium perfringens ATCC 13124] gi|168208720|ref|ZP_02634345.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens B str. ATCC 3626] gi|168212945|ref|ZP_02638570.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens CPE str. F4969] gi|182624386|ref|ZP_02952170.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens D str. JGS1721] gi|122958755|sp|Q0TNU2|RRMF_CLOP1 RecName: Full=Probable rRNA maturation factor gi|110674775|gb|ABG83762.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens ATCC 13124] gi|170713197|gb|EDT25379.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens B str. ATCC 3626] gi|170715613|gb|EDT27795.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens CPE str. F4969] gi|177910389|gb|EDT72766.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens D str. JGS1721] Length = 168 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 18/144 (12%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC- 96 + V + + K VKE+ E+SLVF D+ I +N E RGID+ T+VLSFP D Sbjct: 22 EEVISFVLKEEKVKED-CEVSLVFVDNEEIRGINNETRGIDRATDVLSFPMIDYPEDKVY 80 Query: 97 ----------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 L+LGDIVL+ E + ++ FE +L+ H LHLLGY Sbjct: 81 KDVYLEHEFDKCYFDGDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGY 140 Query: 141 DHVDDKDACVMEGLERSILEDLGI 164 DH+++++ M G E +L L I Sbjct: 141 DHMEEEEKARMRGREEELLGKLNI 164 >gi|169343547|ref|ZP_02864546.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens C str. JGS1495] gi|169298107|gb|EDS80197.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens C str. JGS1495] Length = 168 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 18/144 (12%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC- 96 + V + + K VKE+ E+SLVF D+ I +N E RGID+ T+VLSFP D Sbjct: 22 EEVISFVLKEEKVKED-CEVSLVFVDNEEIRGINNETRGIDRATDVLSFPMIDYPEDKVY 80 Query: 97 ----------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 L+LGDIVL+ E + ++ FE +L+ H LHLLGY Sbjct: 81 KDVYLEHEFDKCYFDGDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGY 140 Query: 141 DHVDDKDACVMEGLERSILEDLGI 164 DH+++++ M G E +L L I Sbjct: 141 DHMEEEEKARMRGREEELLGKLNI 164 >gi|299533016|ref|ZP_07046403.1| putative metal-dependent hydrolase [Comamonas testosteroni S44] gi|298719240|gb|EFI60210.1| putative metal-dependent hydrolase [Comamonas testosteroni S44] Length = 152 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 17/120 (14%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-----PTAFASSDGCSSLMLGDIVLAYE 109 E+++ D+ LN EYR D TNVL+F PT A D+VL Sbjct: 42 AEITVRIVDTEEGRKLNREYRKKDYATNVLTFDYHQEPTVMA-----------DLVLCAP 90 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 ++E EA K E H HL++HG LH G+DH ++DA ME E I++++G DPY Sbjct: 91 VVEREAQEQNKSLEEHYAHLLVHGTLHAQGWDHETSEEDAEEMEAYETDIMKEMGYEDPY 150 >gi|168215645|ref|ZP_02641270.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens NCTC 8239] gi|182382067|gb|EDT79546.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens NCTC 8239] Length = 168 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 18/144 (12%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC- 96 + V + + K VKE+ E+SLVF D+ I +N E RGID+ T+VLSFP D Sbjct: 22 EEVISFVLKEEKVKED-CEVSLVFVDNEEIRGINNETRGIDRATDVLSFPMIDYPEDKVY 80 Query: 97 ----------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 L+LGDIVL+ E + ++ FE +L+ H LHLLGY Sbjct: 81 KDVYLEHEFDKCYFDEDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGY 140 Query: 141 DHVDDKDACVMEGLERSILEDLGI 164 DH+++++ M G E +L L I Sbjct: 141 DHMEEEEKARMRGREEELLGKLNI 164 >gi|221064957|ref|ZP_03541062.1| protein of unknown function UPF0054 [Comamonas testosteroni KF-1] gi|220709980|gb|EED65348.1| protein of unknown function UPF0054 [Comamonas testosteroni KF-1] Length = 152 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D+ LN EYR D TNVL+F + ++ D+VL ++E E Sbjct: 42 AEITVRIVDAEEGRKLNREYRQKDYATNVLTFDYQQEPT------VMADLVLCAPVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A K E H HL++HG LH G+DH ++DA ME E I++++G DPY Sbjct: 96 AQEQNKTLEEHYAHLLVHGTLHAQGWDHETSEEDAEEMEAYETDIMKEMGYEDPY 150 >gi|325141764|gb|EGC64216.1| hypothetical protein TIGR00043 [Neisseria meningitidis 961-5945] gi|325197750|gb|ADY93206.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis G2136] Length = 171 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 111 KEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPYQED 169 >gi|168179379|ref|ZP_02614043.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum NCTC 2916] gi|182669701|gb|EDT81677.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum NCTC 2916] Length = 166 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 21/138 (15%) Query: 48 YFVKENIV----ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--------------- 88 Y +KE V E+S+VF D++ I+ +N +YR IDK T+VLSFP Sbjct: 27 YALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEKGEVFKDIYLN 86 Query: 89 -AFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 F SD +L+LGDI L+ E E ++ G F +L IH LHLLGYDH+++ Sbjct: 87 YEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEED 146 Query: 147 DACVMEGLERSILEDLGI 164 + +M E IL+ + Sbjct: 147 EKVIMRQREEEILKSFNL 164 >gi|153938871|ref|YP_001392225.1| putative metalloprotease [Clostridium botulinum F str. Langeland] gi|170757065|ref|YP_001782581.1| putative metalloprotease [Clostridium botulinum B1 str. Okra] gi|166228940|sp|A7GHG5|RRMF_CLOBL RecName: Full=Probable rRNA maturation factor gi|229553944|sp|B1ILL2|RRMF_CLOBK RecName: Full=Probable rRNA maturation factor gi|152934767|gb|ABS40265.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum F str. Langeland] gi|169122277|gb|ACA46113.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum B1 str. Okra] gi|295320223|gb|ADG00601.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum F str. 230613] Length = 166 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 21/138 (15%) Query: 48 YFVKENIV----ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--------------- 88 Y +KE V E+S+VF D++ I+ +N +YR IDK T+VLSFP Sbjct: 27 YALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEEGKVFKDIYLN 86 Query: 89 -AFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 F SD +L+LGDI L+ E E ++ G F +L IH LHLLGYDH+++ Sbjct: 87 YEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEED 146 Query: 147 DACVMEGLERSILEDLGI 164 + +M E IL+ + Sbjct: 147 EKVIMRQREEEILKSFNL 164 >gi|75762398|ref|ZP_00742269.1| Hypothetical metal-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899469|ref|YP_002447880.1| hypothetical protein BCG9842_B0816 [Bacillus cereus G9842] gi|226708103|sp|B7IYF4|RRMF_BACC2 RecName: Full=Probable rRNA maturation factor gi|74490110|gb|EAO53455.1| Hypothetical metal-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542257|gb|ACK94651.1| conserved hypothetical protein TIGR00043 [Bacillus cereus G9842] Length = 156 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----GCS-SLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF G MLGD++ Sbjct: 36 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F+ L L +HGFLHLLGYDH+ +++ M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEEEKEMFGRQKEILEAFGLG 155 >gi|238544550|dbj|BAH60902.1| hyphothetical protein [Desulfotignum balticum] Length = 140 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 1/98 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S+V D +I+ LN +RGID+PTNVLSFP + +LGD+V++ + EA Sbjct: 24 EISIVIMDDLQIKELNHSFRGIDRPTNVLSFPMQEGEFSDITPGLLGDVVISAQTAAREA 83 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVME 152 G + + L+IHG LHL+G+DH K DA ME Sbjct: 84 QEAGITLDERMSQLLIHGILHLVGFDHETSKADADDME 121 >gi|229824784|ref|ZP_04450853.1| hypothetical protein GCWU000182_00133 [Abiotrophia defectiva ATCC 49176] gi|229791113|gb|EEP27227.1| hypothetical protein GCWU000182_00133 [Abiotrophia defectiva ATCC 49176] Length = 168 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 16/126 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 +E++++ T + I+ N +R ID+PT+VLSFP SS Sbjct: 38 IEVNVLLTGNDEIQEANRNFRDIDRPTDVLSFPMVDYSSPSDFSTVNESPECYLNPETDE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDI+++ + + +A G + LI H LHLLGYDH++D++ VME + ++ Sbjct: 98 LVLGDIMISVDKVYEQAEEYGHSRKREFAFLIAHSMLHLLGYDHMEDEERVVMEAKQEAV 157 Query: 159 LEDLGI 164 LE LGI Sbjct: 158 LEALGI 163 >gi|332638285|ref|ZP_08417148.1| metal-dependent hydrolase [Weissella cibaria KACC 11862] Length = 160 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 13/123 (10%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----------LGD 103 E+S+ F ++ I+ N EYRG+DKPT+V+SF D +M +GD Sbjct: 38 TEMSVTFVNNDEIQRYNREYRGLDKPTDVISFAIE-EDGDDMPLMMDEDMAEDLAKNIGD 96 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDL 162 I+++ + I +A L +E L L++HGFLHL GYDH+ D+D +M L+R IL+ Sbjct: 97 IIVSVDKIGEQAEYLEHSYERELGFLVVHGFLHLNGYDHMRSDEDEKIMFDLQREILDSY 156 Query: 163 GIN 165 G+ Sbjct: 157 GLT 159 >gi|308750998|gb|ADO44481.1| protein of unknown function UPF0054 [Hydrogenobacter thermophilus TK-6] Length = 144 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+S+ TD I LN +YRG D+PT+VLSFP + L+LGDIV++++ + + Sbjct: 39 AEISIYITDDETIRHLNRDYRGKDEPTDVLSFPICEKVGNW---LILGDIVISFDTAKKQ 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A+ +G E + L+ HGF+HLLGYDH Sbjct: 96 ASQMGHSLEEEIKRLLAHGFVHLLGYDH 123 >gi|317404693|gb|EFV85085.1| hypothetical protein HMPREF0005_04068 [Achromobacter xylosoxidans C54] Length = 157 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-----PTAFASSDGCSSLMLGD 103 V+ + ELSL + LN ++R D TNVL+F P A GD Sbjct: 39 LVEFSAAELSLRLVGAAEGRRLNRDFRQRDYATNVLTFEYGVDPLGVAR---------GD 89 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 IV+ ++ EA K +H HL +HG LH LGYDH+ +DA ME LE + L +G Sbjct: 90 IVMCVPVLVREAREQRKALLDHAAHLTLHGVLHSLGYDHIKARDARRMEALETATLARMG 149 Query: 164 INDPY 168 I DPY Sbjct: 150 IADPY 154 >gi|288817391|ref|YP_003431738.1| putative metalloprotease [Hydrogenobacter thermophilus TK-6] gi|288786790|dbj|BAI68537.1| putative metalloprotease [Hydrogenobacter thermophilus TK-6] Length = 147 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+S+ TD I LN +YRG D+PT+VLSFP + L+LGDIV++++ + + Sbjct: 42 AEISIYITDDETIRHLNRDYRGKDEPTDVLSFPICEKVGNW---LILGDIVISFDTAKKQ 98 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A+ +G E + L+ HGF+HLLGYDH Sbjct: 99 ASQMGHSLEEEIKRLLAHGFVHLLGYDH 126 >gi|325133946|gb|EGC56602.1| hypothetical protein TIGR00043 [Neisseria meningitidis M13399] Length = 171 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 111 KEAAEQGKTPERHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPYQED 169 >gi|91785152|ref|YP_560358.1| hypothetical protein Bxe_A0628 [Burkholderia xenovorans LB400] gi|123168087|sp|Q13UD3|RRMF_BURXL RecName: Full=Probable rRNA maturation factor gi|91689106|gb|ABE32306.1| Protein of unknown function UPF0054 [Burkholderia xenovorans LB400] Length = 153 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 7/131 (5%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 AV+ I F EL++ F D+ TLN YRG D TNVL+F A+A S+ Sbjct: 30 AVAGWIKAALFADG---ELTVRFVDAEEGRTLNRTYRGKDYSTNVLTF--AYAESE--DD 82 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 + GD++L ++E EA GK H HL++HG LH GYDH +++A ME +E I Sbjct: 83 PVTGDLILCCPVVEKEAAEQGKPLVAHYAHLLVHGTLHAQGYDHEVEEEAEEMEAIETEI 142 Query: 159 LEDLGINDPYE 169 L LG DPY+ Sbjct: 143 LGKLGFPDPYQ 153 >gi|148380900|ref|YP_001255441.1| putative metalloprotease [Clostridium botulinum A str. ATCC 3502] gi|153933017|ref|YP_001385208.1| putative metalloprotease [Clostridium botulinum A str. ATCC 19397] gi|153936466|ref|YP_001388677.1| putative metalloprotease [Clostridium botulinum A str. Hall] gi|166228924|sp|A7FXK4|RRMF_CLOB1 RecName: Full=Probable rRNA maturation factor gi|166228931|sp|A5I629|RRMF_CLOBH RecName: Full=Probable rRNA maturation factor gi|148290384|emb|CAL84511.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929061|gb|ABS34561.1| metal-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932380|gb|ABS37879.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum A str. Hall] Length = 166 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 21/138 (15%) Query: 48 YFVKENIV----ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--------------- 88 Y +KE V E+S+VF D++ I+ +N +YR IDK T+VLSFP Sbjct: 27 YALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEDGEVFKDIYLN 86 Query: 89 -AFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 F SD +L+LGDI L+ E E ++ G F +L IH LHLLGYDH+++ Sbjct: 87 YEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEED 146 Query: 147 DACVMEGLERSILEDLGI 164 + +M E IL+ + Sbjct: 147 EKVIMRQREEEILKSFNL 164 >gi|312622489|ref|YP_004024102.1| hypothetical protein Calkro_1427 [Caldicellulosiruptor kronotskyensis 2002] gi|312202956|gb|ADQ46283.1| protein of unknown function UPF0054 [Caldicellulosiruptor kronotskyensis 2002] Length = 158 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 14/161 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +++ N I F++E E+S+ D+ I+ LN Sbjct: 1 MKIFIQN--QQDKVDIDQHISKIIEESIVNTIK--VFLEEENFEISVFIVDNSFIKELNR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC---------SSLMLGDIVLAYEIIEIEANVLGKEFE 123 YR ++K T+VLSFP F +G + LGDIV++ E +A G E Sbjct: 57 NYRNVNKETDVLSFPI-FEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAKEFGHSLE 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 116 REIAYLTVHSVLHLLGFDHIEEDDRKVMREYEEQILQSMGL 156 >gi|226950374|ref|YP_002805465.1| hypothetical protein TIGR00043 [Clostridium botulinum A2 str. Kyoto] gi|254801658|sp|C1FVS9|RRMF_CLOBJ RecName: Full=Probable rRNA maturation factor gi|226841958|gb|ACO84624.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum A2 str. Kyoto] gi|322807265|emb|CBZ04839.1| metal-dependent hydrolase [Clostridium botulinum H04402 065] Length = 166 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 21/138 (15%) Query: 48 YFVKENIV----ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--------------- 88 Y +KE V E+S+VF D++ I+ +N +YR IDK T+VLSFP Sbjct: 27 YALKEEKVNIDYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEEGEVFKDIYLN 86 Query: 89 -AFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 F SD +L+LGDI L+ E E ++ G F +L IH LHLLGYDH+++ Sbjct: 87 YEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEED 146 Query: 147 DACVMEGLERSILEDLGI 164 + +M E IL+ + Sbjct: 147 EKVIMRQREEEILKSFNL 164 >gi|116872896|ref|YP_849677.1| putative metalloprotease [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466300|sp|A0AIR6|RRMF_LISW6 RecName: Full=Probable rRNA maturation factor gi|116741774|emb|CAK20898.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 161 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 12/137 (8%) Query: 40 VSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------- 89 V N++ + GY + ELSL FT + I +N EYR D+ T+V+SF Sbjct: 23 VENILQFAAGYLKIDEGTELSLTFTTNEGIREINREYRNKDQATDVISFALEEMGEGETE 82 Query: 90 --FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 +A D + MLGDI+++ E E +A G L L +HG LHLLGYDH++ + Sbjct: 83 IDWADFDLETPKMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDE 142 Query: 148 ACVMEGLERSILEDLGI 164 +M GL++ +L+ G+ Sbjct: 143 EKIMFGLQKEVLDAYGL 159 >gi|302670671|ref|YP_003830631.1| hypothetical protein bpr_I1311 [Butyrivibrio proteoclasticus B316] gi|302395144|gb|ADL34049.1| hypothetical protein bpr_I1311 [Butyrivibrio proteoclasticus B316] Length = 167 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 65/127 (51%), Gaps = 17/127 (13%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FASSDG----------CS 97 VE+SL TD I +N E+R ID PT+VLSFP F+ DG Sbjct: 38 VEISLTITDDEGIREINNEFRQIDSPTDVLSFPNVSYDEPGDFSVIDGEQKVDLLNPDTG 97 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 ++ GDIV+ + +A G + L+ H LHL GYDH+++++A VMEG + Sbjct: 98 NISFGDIVINVNRVRSQALEYGHSEKREFAFLVAHSMLHLCGYDHMEEQEAAVMEGKQND 157 Query: 158 ILEDLGI 164 IL LGI Sbjct: 158 ILTYLGI 164 >gi|302333246|gb|ADL23439.1| putative metalloprotease [Staphylococcus aureus subsp. aureus JKD6159] Length = 155 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 5/119 (4%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS-----LMLGDIVL 106 E+ ELS+ F D I+ +N YR DK T+V+SF D S +LGDI++ Sbjct: 35 EDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPDIDFSGFDIPRVLGDIII 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +AN G FE L L +HGFLHLLGYDH+ + D M G + +IL G+ Sbjct: 95 CTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLT 153 >gi|171060619|ref|YP_001792968.1| hypothetical protein Lcho_3949 [Leptothrix cholodnii SP-6] gi|170778064|gb|ACB36203.1| protein of unknown function UPF0054 [Leptothrix cholodnii SP-6] Length = 160 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 7/114 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E ++ D+ + LN +YRG D TNVL+F + ++ D+VL ++E EA Sbjct: 48 EFTVRIVDAEEAQGLNRDYRGKDYATNVLTFDYS------AEPVVAADLVLCAPVVEAEA 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC-VMEGLERSILEDLGINDPY 168 GK H HL++HG LH GYDH DD++A ME ER +L LG +DPY Sbjct: 102 AAAGKTLVAHYAHLLVHGALHAQGYDHEDDEEAAECMEAREREVLAALGFDDPY 155 >gi|293366469|ref|ZP_06613146.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319238|gb|EFE59607.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W2(grey)] gi|329735371|gb|EGG71663.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU045] Length = 155 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 13/136 (9%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----T 88 + FAK N+ N ELS+ F D I+ +N YR DK T+V+SF Sbjct: 25 LTFAKKKENI--------HNDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFALEEDEP 76 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 +D +LGDI++ ++ + ++ G FE L L +HGFLHLLGYDH++D D Sbjct: 77 EIDFNDFDIPRVLGDIIICRDVAKEQSESYGHSFERELGFLALHGFLHLLGYDHMNDNDE 136 Query: 149 CVMEGLERSILEDLGI 164 M G + +IL + G+ Sbjct: 137 KEMFGRQDAILNEFGL 152 >gi|309803146|ref|ZP_07697243.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 11V1-d] gi|325912150|ref|ZP_08174548.1| translation metalloprotein YbeY [Lactobacillus iners UPII 143-D] gi|308164654|gb|EFO66904.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 11V1-d] gi|325476100|gb|EGC79268.1| translation metalloprotein YbeY [Lactobacillus iners UPII 143-D] Length = 175 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-- 100 L +K K N E+S+ F D ++I +N YRG D+PT+V+SF A DG + + Sbjct: 31 LSAKKNIKKTNRQEMSINFVDINKIHEINKNYRGKDRPTDVISF----AIEDGTDNDLFA 86 Query: 101 -----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 +GD+ + E++E A F + ++HG+LHL GYDH+ D +A Sbjct: 87 QFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFGYTLVHGYLHLNGYDHIKDDEAE 146 Query: 150 VMEGLERSILEDLGI 164 VM G++ +LE+ G+ Sbjct: 147 VMFGIQSKVLEEYGL 161 >gi|224476678|ref|YP_002634284.1| hypothetical protein Sca_1192 [Staphylococcus carnosus subsp. carnosus TM300] gi|254799973|sp|B9DNL6|RRMF_STACT RecName: Full=Probable rRNA maturation factor gi|222421285|emb|CAL28099.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 153 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--GCS-SLMLGDIVLAY 108 E+ ELS+ F + I+ +N +YR DK T+V+SF D G +LGDI++ Sbjct: 35 EDDAELSVTFVNKQEIQEINRDYRNKDKVTDVISFALEEDEPDIEGLDMPRVLGDIIICA 94 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G FE L L +HGFLHLLGYDH+++ D M G ++ IL++ G+ Sbjct: 95 DVAKEQAEEYGHSFERELGFLALHGFLHLLGYDHMNEADEKEMFGRQKLILDNYGL 150 >gi|257065846|ref|YP_003152102.1| hypothetical protein Apre_0330 [Anaerococcus prevotii DSM 20548] gi|256797726|gb|ACV28381.1| protein of unknown function UPF0054 [Anaerococcus prevotii DSM 20548] Length = 446 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S+ F D I LN E+R +D+PT+VLSFP + MLGDIV+ ++ + +A Sbjct: 37 EVSITFVDREEIHRLNREFRDVDRPTDVLSFPLDDTIDLPDADKMLGDIVICLDVAKDQA 96 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI--NDPYE 169 G +++L H LHLLGYDH+++ + M E+ ++ +L + ND +E Sbjct: 97 MEFGHSLRREIMYLTCHSTLHLLGYDHMEEDEKREMRRREKEVMRNLRVFKNDDHE 152 >gi|319639195|ref|ZP_07993946.1| metalloprotease [Neisseria mucosa C102] gi|317399379|gb|EFV80049.1| metalloprotease [Neisseria mucosa C102] Length = 171 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 14/125 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--------PTAFASSDGCSSLMLGDIVL 106 ++SL+ D N +YRG D TNVLSF P F SDG + GD+V+ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQF--SDG----LYGDLVI 104 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 +++ EA+ GK E H HL IHG LHL+GYDH++D +A +ME E ++ G + Sbjct: 105 CPQVVLKEASEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPN 164 Query: 167 PYEVD 171 PY+ D Sbjct: 165 PYQED 169 >gi|289450697|ref|YP_003475263.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185244|gb|ADC91669.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 563 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENI-VELSLVFTDSHRIETLN 71 +Q E W LR + S L Y +E + E ++ F + + +LN Sbjct: 3 IQFQKEKCKWST-AELRQIIRYTLQAGFSYLPFSDYLSEEGLQPEFAVTFIGADAMRSLN 61 Query: 72 FEYRGIDKPTNVLSFP-------------TAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 E RGIDK T+VLSFP TA + +S+ LGDIV+ + E +A Sbjct: 62 KEQRGIDKVTDVLSFPMLAMKKGALEEHLTAADINPENNSVFLGDIVICLDRAEEQALEF 121 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN 165 + + L +H LHL+GYDHVD++ D ME ++R +L++LGI Sbjct: 122 NHTMQREVAFLTLHSMLHLVGYDHVDNETDRLEMEEIQRELLDNLGIK 169 >gi|309806598|ref|ZP_07700595.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 03V1-b] gi|312872992|ref|ZP_07733052.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2062A-h1] gi|312874169|ref|ZP_07734203.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2052A-d] gi|315653579|ref|ZP_07906499.1| metal-dependent hydrolase [Lactobacillus iners ATCC 55195] gi|308167018|gb|EFO69200.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 03V1-b] gi|311090239|gb|EFQ48649.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2052A-d] gi|311091514|gb|EFQ49898.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2062A-h1] gi|315488941|gb|EFU78583.1| metal-dependent hydrolase [Lactobacillus iners ATCC 55195] Length = 175 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-- 100 L +K K N E+S+ F D ++I +N YRG D+PT+V+SF A DG + + Sbjct: 31 LSAKKNIKKTNRQEMSINFVDINKIHEINKNYRGKDRPTDVISF----AIEDGTDNDLFA 86 Query: 101 -----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 +GD+ + E++E A F + ++HG+LHL GYDH+ D +A Sbjct: 87 QFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFGYTLVHGYLHLNGYDHIKDDEAE 146 Query: 150 VMEGLERSILEDLGI 164 VM G++ +LE+ G+ Sbjct: 147 VMFGIQSKVLEEYGL 161 >gi|256851189|ref|ZP_05556578.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260660613|ref|ZP_05861528.1| metal-dependent hydrolase [Lactobacillus jensenii 115-3-CHN] gi|282934655|ref|ZP_06339898.1| putative metalloprotease [Lactobacillus jensenii 208-1] gi|297206054|ref|ZP_06923449.1| metal-dependent hydrolase [Lactobacillus jensenii JV-V16] gi|256616251|gb|EEU21439.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260548335|gb|EEX24310.1| metal-dependent hydrolase [Lactobacillus jensenii 115-3-CHN] gi|281301230|gb|EFA93531.1| putative metalloprotease [Lactobacillus jensenii 208-1] gi|297149180|gb|EFH29478.1| metal-dependent hydrolase [Lactobacillus jensenii JV-V16] Length = 174 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-----CS 97 L++K K+N +E+S+ F D + +N +YRG D+PT+V+SF A DG S Sbjct: 31 LMAKKEISKDNNLEMSINFVDEDKSHQINRDYRGKDRPTDVISF----AIEDGEEGVDLS 86 Query: 98 SLM--------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 S + +GD+ + +I+ A G F+ + ++HGFLHL GYDH++ +A Sbjct: 87 SFIEDPDFTEDIGDLFMCISVIKRHAEEYGTGFDREFGYTLVHGFLHLNGYDHIEPAEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LE+ G+ Sbjct: 147 EMFGIQGKVLEEYGL 161 >gi|326389851|ref|ZP_08211415.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus JW 200] gi|325994119|gb|EGD52547.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus JW 200] Length = 159 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASS---------DGCSSLMLGDI 104 VE+S+ F D+ I LN YRGIDKPT+VLSFP A F + D +GDI Sbjct: 38 VEVSVSFVDNEEIRKLNKYYRGIDKPTDVLSFPLAEFEETYGEVEKIEEDSEEVQPIGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 V++ E ++ G FE + +L H LHLLGYDH +++ +M E ++ L I Sbjct: 98 VISLEKALEQSIEYGHSFEREVAYLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNI 157 >gi|259500585|ref|ZP_05743487.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302191276|ref|ZP_07267530.1| hypothetical protein LineA_04632 [Lactobacillus iners AB-1] gi|259167969|gb|EEW52464.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] Length = 175 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-- 100 L +K K N E+S+ F D ++I +N YRG D+PT+V+SF A DG + + Sbjct: 31 LSAKKNIKKTNRQEMSINFVDINKIHEINKNYRGKDRPTDVISF----AIEDGTDNDLFA 86 Query: 101 -----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 +GD+ + E++E A F + ++HG+LHL GYDH+ D +A Sbjct: 87 QFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFGYTLVHGYLHLNGYDHIKDDEAE 146 Query: 150 VMEGLERSILEDLGI 164 VM G++ +LE+ G+ Sbjct: 147 VMFGIQSKVLEEYGL 161 >gi|291459261|ref|ZP_06598651.1| putative metalloprotease [Oribacterium sp. oral taxon 078 str. F0262] gi|291418515|gb|EFE92234.1| putative metalloprotease [Oribacterium sp. oral taxon 078 str. F0262] Length = 165 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 60/125 (48%), Gaps = 16/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E+S++FTD+ I +N + RGID PT+VLSFP A G Sbjct: 38 CEISVLFTDNEGIRAINRDSRGIDAPTDVLSFPMAEYKRPGDFSIFREGDPELFNPDTGD 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIVL + IE +A G L L H LHL GYDH+ + + ME +R I Sbjct: 98 FFLGDIVLNLDRIESQAREYGHSERRELAFLTAHSMLHLFGYDHMAEGERSEMERRQREI 157 Query: 159 LEDLG 163 LE G Sbjct: 158 LEGKG 162 >gi|59799018|sp|Q62ML1|RRMF_BURMA RecName: Full=Probable rRNA maturation factor gi|145558842|sp|Q3JVV3|RRMF_BURP1 RecName: Full=Probable rRNA maturation factor Length = 184 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 35 PELDLAVQ-----YGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDTQFTVRFVGADEGR 86 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 87 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 142 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 143 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 183 >gi|227890110|ref|ZP_04007915.1| metal-dependent hydrolase [Lactobacillus johnsonii ATCC 33200] gi|227849554|gb|EEJ59640.1| metal-dependent hydrolase [Lactobacillus johnsonii ATCC 33200] Length = 175 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 13/155 (8%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + DE+ + + +SNL+ +K KEN E+S+ F S +I +N +YRG D+ Sbjct: 8 FNDEVTFLKDSDKDWISWISNLLLSAKKEIHKENSQEMSINFVSSKKIHEINKKYRGKDR 67 Query: 80 PTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 PT+V+SF +AF S D +GD+ L E+I+ + F + Sbjct: 68 PTDVISFAIEDGLDEDFMSAF-SDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFGYT 126 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++HG+LHL GYDH++D +A +M G++ +L + G+ Sbjct: 127 LVHGYLHLNGYDHIEDDEAKIMFGIQGKVLREYGL 161 >gi|170759303|ref|YP_001788261.1| putative metalloprotease [Clostridium botulinum A3 str. Loch Maree] gi|238688538|sp|B1KZM6|RRMF_CLOBM RecName: Full=Probable rRNA maturation factor gi|169406292|gb|ACA54703.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum A3 str. Loch Maree] Length = 166 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 23/150 (15%) Query: 36 FAKAVSNLISKGYFVKENIV----ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--- 88 F + +I Y +KE V E+S++F D++ I+ +N +YR IDK T+VLSFP Sbjct: 17 FENKIKEIID--YALKEEKVNIDYEISVIFIDNNSIKEINKDYRNIDKATDVLSFPMLDY 74 Query: 89 -------------AFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 F SD +L+LGDI L+ E E ++ G F +L IH Sbjct: 75 EEGEVFKDVYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSV 134 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHLLGYDH+++ + +M E IL+ + Sbjct: 135 LHLLGYDHMEEDEKAIMRQREEEILKSFNL 164 >gi|161869467|ref|YP_001598633.1| hypothetical protein NMCC_0479 [Neisseria meningitidis 053442] gi|161595020|gb|ABX72680.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 211 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 10/123 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAY 108 ++SL+ D N +YRG D TNVLSF A ++G S + GD+++ Sbjct: 91 ADISLILLDEEEARAYNRDYRGKDYATNVLSF----ALNEGETLPGQVSEKLYGDLIICP 146 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++ EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY Sbjct: 147 QVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPY 206 Query: 169 EVD 171 + D Sbjct: 207 QED 209 >gi|297544406|ref|YP_003676708.1| hypothetical protein Tmath_0963 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842181|gb|ADH60697.1| protein of unknown function UPF0054 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 159 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASS-------DGCSSLM--LGDI 104 VE+S+ F D+ + LN YRGIDKPT+VLSFP A F + D S + +GDI Sbjct: 38 VEVSVSFVDNEEMRKLNKYYRGIDKPTDVLSFPLAEFEETYDKIEKIDQESEEVQPIGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 V++ E ++ G FE + +L H LHLLGYDH +++ +M E I+ L I Sbjct: 98 VISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDHQTEEERKIMRQKEEEIMARLNI 157 Query: 165 N 165 Sbjct: 158 R 158 >gi|220932095|ref|YP_002509003.1| conserved hypothetical protein TIGR00043 [Halothermothrix orenii H 168] gi|219993405|gb|ACL70008.1| conserved hypothetical protein TIGR00043 [Halothermothrix orenii H 168] Length = 142 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 8/123 (6%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + +I+K V++ +S+ D+ I LN +YR ++ PT+VLSFP Sbjct: 23 IETVINKTAEVEKASGTVSVALVDNKTIAELNSKYRNVEGPTDVLSFP--------MDED 74 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDI+++ + +A+ G E L L +HG LHLLGY+H D++ CVM E +L Sbjct: 75 ILGDIIISIDRARQQADEYGHSLERELGFLTVHGMLHLLGYNHKTDEEKCVMRQKEERVL 134 Query: 160 EDL 162 ++L Sbjct: 135 KEL 137 >gi|59799019|sp|Q63X65|RRMF_BURPS RecName: Full=Probable rRNA maturation factor Length = 184 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 35 PELDLAVQ-----YGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 86 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 87 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 142 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 143 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 183 >gi|116617889|ref|YP_818260.1| metal-dependent hydrolase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271910|sp|Q03Y35|RRMF_LEUMM RecName: Full=Probable rRNA maturation factor gi|116096736|gb|ABJ61887.1| Predicted metal-dependent hydrolase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 160 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 15/123 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------------PTAFASSDGCSSLMLG 102 E+S+ F ++ I N +YRGIDKPT+V+SF P ++ ++ G Sbjct: 38 TEMSVTFMNNEEIHQYNKKYRGIDKPTDVISFAIEEDGDDLPVLPDELMDAELAKNI--G 95 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILED 161 DI+++ +II +A LG +E L L++HGFLHL GYDH+ D + M L+R IL++ Sbjct: 96 DILVSVDIINSQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQREILDN 155 Query: 162 LGI 164 G+ Sbjct: 156 YGL 158 >gi|308069930|ref|YP_003871535.1| hypothetical protein PPE_03178 [Paenibacillus polymyxa E681] gi|305859209|gb|ADM70997.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 165 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 16/124 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---------------PTAFASSDGCSSLM 100 E++L F + +I LN +YRGID+PT+VLSF P S + + Sbjct: 41 EVALTFVNDEQIHELNRDYRGIDRPTDVLSFAMKETLDEELEIIYEPNEENSLNDVPDV- 99 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDI+++ + + ++ G E + L +HGFLHLLGYDH DD M G + ++L Sbjct: 100 LGDIIISVQTAQAQSEEYGHSIEREIGFLFVHGFLHLLGYDHQDDVSEAEMMGKQEAVLA 159 Query: 161 DLGI 164 G+ Sbjct: 160 QAGL 163 >gi|239623718|ref|ZP_04666749.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521749|gb|EEQ61615.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 165 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 16/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E++++ TD+ I +N EYR ID PT+VLSFP + Sbjct: 38 AEVNVILTDNEAIREINREYREIDSPTDVLSFPMVDYGTPSDFDHVEEAVEDYFNPETGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LMLGDIV++ + +E +A G L L+ H LHL GYDH+++ + ME +R I Sbjct: 98 LMLGDIVVSVDKVEEQAEKYGHSETRELAFLVAHSMLHLFGYDHMEEGEREQMEDRQRKI 157 Query: 159 LEDLG 163 LE G Sbjct: 158 LETRG 162 >gi|78043035|ref|YP_359288.1| hypothetical protein CHY_0427 [Carboxydothermus hydrogenoformans Z-2901] gi|123576940|sp|Q3AEZ6|RRMF_CARHZ RecName: Full=Probable rRNA maturation factor gi|77995150|gb|ABB14049.1| conserved hypothetical protein TIGR00043 [Carboxydothermus hydrogenoformans Z-2901] Length = 143 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 4/108 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+ D++ I++LN EYR D PT+VLSFP A D +LGD+V++ E +A Sbjct: 38 VSIALVDNNYIQSLNREYRQKDVPTDVLSFPLA----DDKDDEVLGDVVISLEKAAEQAK 93 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G F + L +HG LHLLG+DH ++++ +M E IL LG+ Sbjct: 94 EYGHSFFREVAFLTVHGVLHLLGHDHYEEEETRIMREKEEKILSALGL 141 >gi|57867019|ref|YP_188713.1| hypothetical protein SERP1137 [Staphylococcus epidermidis RP62A] gi|62901408|sp|Q5HNX7|RRMF_STAEQ RecName: Full=Probable rRNA maturation factor gi|57637677|gb|AAW54465.1| conserved hypothetical protein TIGR00043 [Staphylococcus epidermidis RP62A] Length = 155 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 13/136 (9%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----T 88 + FAK N+ N ELS+ F D I+ +N YR DK T+V+SF Sbjct: 25 LTFAKKKENI--------HNDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFALEEDEP 76 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 +D +LGDI++ ++ + ++ G FE L L +HGFLHLLGYDH++D D Sbjct: 77 EIDFNDFDIPRVLGDIIICTDVAKEQSESYGHSFERELGFLALHGFLHLLGYDHMNDNDE 136 Query: 149 CVMEGLERSILEDLGI 164 M G + +IL + G+ Sbjct: 137 KEMFGRQDAILNEFGL 152 >gi|27468175|ref|NP_764812.1| hypothetical protein SE1257 [Staphylococcus epidermidis ATCC 12228] gi|251810987|ref|ZP_04825460.1| metal-dependent hydrolase [Staphylococcus epidermidis BCM-HMP0060] gi|282876004|ref|ZP_06284871.1| metalloprotein, YbeY/ UPF0054family [Staphylococcus epidermidis SK135] gi|29428185|sp|Q8CSD3|RRMF_STAES RecName: Full=Probable rRNA maturation factor gi|27315721|gb|AAO04856.1|AE016748_90 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|251805497|gb|EES58154.1| metal-dependent hydrolase [Staphylococcus epidermidis BCM-HMP0060] gi|281295029|gb|EFA87556.1| metalloprotein, YbeY/ UPF0054family [Staphylococcus epidermidis SK135] gi|329725400|gb|EGG61883.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU144] gi|329737264|gb|EGG73518.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU028] Length = 155 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 13/136 (9%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----T 88 + FAK N+ N ELS+ F D I+ +N YR DK T+V+SF Sbjct: 25 LTFAKKKENI--------HNDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFALEEDEP 76 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 +D +LGDI++ ++ + ++ G FE L L +HGFLHLLGYDH++D D Sbjct: 77 EIDFNDFDIPRVLGDIIICTDVAKEQSESYGHSFERELGFLALHGFLHLLGYDHMNDNDE 136 Query: 149 CVMEGLERSILEDLGI 164 M G + +IL + G+ Sbjct: 137 KEMFGRQDAILNEFGL 152 >gi|331001780|ref|ZP_08325302.1| hypothetical protein HMPREF0491_00164 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412754|gb|EGG92137.1| hypothetical protein HMPREF0491_00164 [Lachnospiraceae oral taxon 107 str. F0167] Length = 164 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 50/128 (39%), Positives = 65/128 (50%), Gaps = 19/128 (14%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----------------TAFASSDGCS 97 E+S+ D I +N EYRGIDK T+VLSFP AF G Sbjct: 38 AEVSVTIVDDDEIRRINNEYRGIDKSTDVLSFPFNEFDIPGNFDNVEENVDAFNPESG-- 95 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 L+LGDI+L+ E I +A G L L++H LHL+GYDH+ D + ME +R Sbjct: 96 ELLLGDIILSTEHIIEQAREYGHSETRELAFLVVHSMLHLMGYDHMIDDERKDMEDRQRK 155 Query: 158 ILEDLGIN 165 ILE GI+ Sbjct: 156 ILEFEGIS 163 >gi|329667243|gb|AEB93191.1| putative metal-dependent hydrolase [Lactobacillus johnsonii DPC 6026] Length = 175 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 13/155 (8%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + DE++ + + +S+L+ +K KEN E+S+ F S +I +N +YRG D+ Sbjct: 8 FNDEVNFLKDSDKDWIPWISDLLLSAKKEIHKENTQEMSINFVSSKKIHEINKKYRGKDR 67 Query: 80 PTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 PT+V+SF +AF S D +GD+ L E+I+ + F + Sbjct: 68 PTDVISFAIEDGLDEDFMSAF-SDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFGYT 126 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++HG+LHL GYDH++D +A +M G++ +L + G+ Sbjct: 127 LVHGYLHLNGYDHIEDDEAKIMFGIQGKVLREYGL 161 >gi|121610982|ref|YP_998789.1| hypothetical protein Veis_4066 [Verminephrobacter eiseniae EF01-2] gi|145558824|sp|A1WQ64|RRMF_VEREI RecName: Full=Probable rRNA maturation factor gi|121555622|gb|ABM59771.1| protein of unknown function UPF0054 [Verminephrobacter eiseniae EF01-2] Length = 154 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 + + +V D R LN YR D TNVL+F + A L+ D++L +IE E Sbjct: 44 ITVRIVGADEGR--QLNRTYRNKDYATNVLTFVYSQAP------LVTADLLLCAPVIERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK + H H+++HG LH G+DH DA M+ E I++ LG DPY Sbjct: 96 AQQQGKHLQAHYAHMLVHGTLHAQGWDHEGSADADAMQARETQIMQALGFADPY 149 >gi|154498349|ref|ZP_02036727.1| hypothetical protein BACCAP_02338 [Bacteroides capillosus ATCC 29799] gi|150272660|gb|EDM99838.1| hypothetical protein BACCAP_02338 [Bacteroides capillosus ATCC 29799] Length = 164 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 18/163 (11%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ +E + G E + L +V+ A L ++G V E+ ++FTD I +N E Sbjct: 4 ELIIETEVEGAEPYADLLRQVIPAA----LEAEGVAVP---WEVDVLFTDDEGIHQINLE 56 Query: 74 YRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 R +D+PT+VLSFP T + G + LGD+V++ E + + G Sbjct: 57 QREVDRPTDVLSFPMFDLQPGEHPTEEDADPGTGLVPLGDMVISLERAQAQGEEYGHGTR 116 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDLGIN 165 + +L +H LHLLGYDH+D+ M E +ILE LGI Sbjct: 117 REVAYLAVHSVLHLLGYDHMDEGPMKAQMRAREEAILEQLGIT 159 >gi|149926994|ref|ZP_01915252.1| hypothetical protein LMED105_09072 [Limnobacter sp. MED105] gi|149824215|gb|EDM83435.1| hypothetical protein LMED105_09072 [Limnobacter sp. MED105] Length = 165 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 2/103 (1%) Query: 68 ETLNFEYRGIDKPTNVLSFPTAFA--SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + LN ++RG D TNVL+FP +D + + DIV+ ++E EA GK+ +H Sbjct: 57 QQLNRDFRGKDYATNVLTFPMDMPDLGADSGLPVFMADIVICPAVVEREALEQGKDPIDH 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L HLI+HG LH GY H D A +ME E IL+ I++PY Sbjct: 117 LAHLIVHGCLHAQGYVHESDNQAELMENREIEILKRFKISNPY 159 >gi|163783493|ref|ZP_02178484.1| hypothetical protein HG1285_08769 [Hydrogenivirga sp. 128-5-R1-1] gi|159881257|gb|EDP74770.1| hypothetical protein HG1285_08769 [Hydrogenivirga sp. 128-5-R1-1] Length = 142 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 3/87 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS++ TD I LN YRG D+PT+VLSFP + L+LGD+V++ + +A Sbjct: 35 ELSILLTDDEEIRELNRVYRGKDRPTDVLSFPIG---EEVAGRLILGDVVISLDTARRQA 91 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 LG E + L+ HG +HLLGYDH Sbjct: 92 EGLGHTLEEEVSRLLAHGIIHLLGYDH 118 >gi|58337484|ref|YP_194069.1| hypothetical protein LBA1202 [Lactobacillus acidophilus NCFM] gi|227904120|ref|ZP_04021925.1| metal-dependent hydrolase [Lactobacillus acidophilus ATCC 4796] gi|62901404|sp|Q5FJT6|RRMF_LACAC RecName: Full=Probable rRNA maturation factor gi|58254801|gb|AAV43038.1| hypothetical protein LBA1202 [Lactobacillus acidophilus NCFM] gi|227868139|gb|EEJ75560.1| metal-dependent hydrolase [Lactobacillus acidophilus ATCC 4796] Length = 174 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 L++K K+N +E+S+ F + R +N +YR D+PT+V+SF A DG S+ L Sbjct: 31 LLAKKEIGKDNNLEMSINFVNEDRSHEINLKYRDKDRPTDVISF----AIEDGEDSIDLA 86 Query: 102 ------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 GD+ + +I + G F+ + I+HGFLHL GYDH++ +A Sbjct: 87 AFKDDPDFQEDIGDLFMCPSVISRHSKEYGTGFDREFGYTIVHGFLHLNGYDHIEPDEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LED G+ Sbjct: 147 EMFGIQGKVLEDYGL 161 >gi|302391406|ref|YP_003827226.1| hypothetical protein Acear_0619 [Acetohalobium arabaticum DSM 5501] gi|302203483|gb|ADL12161.1| protein of unknown function UPF0054 [Acetohalobium arabaticum DSM 5501] Length = 141 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 8/109 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S+ D+ I+ LN EYRG+D+PT+VLSFP MLGDI+++ E E +A Sbjct: 39 EVSIALVDNEYIKELNAEYRGLDEPTDVLSFP--------LGEEMLGDIIISLERAESQA 90 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + L +HG LHLLGYDH +++ M E +L L + Sbjct: 91 EEYNHSLDREMGFLTVHGMLHLLGYDHKEEEAKEEMRNREEKVLNKLDL 139 >gi|238916903|ref|YP_002930420.1| hypothetical protein EUBELI_00972 [Eubacterium eligens ATCC 27750] gi|259710181|sp|C4Z060|RRMF_EUBE2 RecName: Full=Probable rRNA maturation factor gi|238872263|gb|ACR71973.1| Hypothetical protein EUBELI_00972 [Eubacterium eligens ATCC 27750] Length = 169 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 64/130 (49%), Gaps = 20/130 (15%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--TAFASSD------------------ 94 E+++ DS I +N EYR ID PT+VLSFP SD Sbjct: 38 AEVNVTIVDSESIHEINKEYRNIDSPTDVLSFPGVNYVTPSDFDAIEDELENNAEDYFNP 97 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 L+LGDIVL + I+ +A+ G + L L H +HL GYDH+ +++ VME Sbjct: 98 DTGELLLGDIVLCVQKIKEQADKYGHSEKRELAFLTAHSMMHLFGYDHMTPEESAVMEAK 157 Query: 155 ERSILEDLGI 164 + +LE LGI Sbjct: 158 QNEVLERLGI 167 >gi|218767660|ref|YP_002342172.1| hypothetical protein NMA0717 [Neisseria meningitidis Z2491] gi|26006911|sp|Q9JVS5|RRMF_NEIMA RecName: Full=Probable rRNA maturation factor gi|121051668|emb|CAM07971.1| hypothetical protein NMA0717 [Neisseria meningitidis Z2491] Length = 171 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMLAAGFPNPYQED 169 >gi|319795922|ref|YP_004157562.1| hypothetical protein Varpa_5295 [Variovorax paradoxus EPS] gi|315598385|gb|ADU39451.1| protein of unknown function UPF0054 [Variovorax paradoxus EPS] Length = 152 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 7/114 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D+ + LN E+RG D TNVL+F A S + + D+VL ++ EA Sbjct: 43 EITVRIVDADEGQRLNREFRGKDYATNVLTFDYA------QSPVAMADLVLCAPVVAREA 96 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 K H HL++HG LH G+DH + DA ME E IL +LGI DPY Sbjct: 97 KEQRKTLAAHYAHLLVHGTLHAQGWDHETSEADADEMEAYEIQILAELGIRDPY 150 >gi|295110094|emb|CBL24047.1| conserved hypothetical protein TIGR00043 [Ruminococcus obeum A2-162] Length = 164 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 15/124 (12%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSS--------LML 101 ++LV TD+ I+ +N E+R I PT+VLSFP ++ +G S L+L Sbjct: 40 VNLVITDNEEIKRVNTEFRSIGAPTDVLSFPMIPFETPADYSVIEGDDSYFDLDTEELIL 99 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GD++++ + + +A G E L H LHLLGYDH++ +A VME + LED Sbjct: 100 GDVMISVDKVYAQAEEYGHSTEREFSFLFAHSMLHLLGYDHMEPDEAAVMEAKQAKALED 159 Query: 162 LGIN 165 LGI Sbjct: 160 LGIT 163 >gi|294101753|ref|YP_003553611.1| protein of unknown function UPF0054 [Aminobacterium colombiense DSM 12261] gi|293616733|gb|ADE56887.1| protein of unknown function UPF0054 [Aminobacterium colombiense DSM 12261] Length = 178 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 64/122 (52%), Gaps = 9/122 (7%) Query: 28 LRTL--CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 LR L CE V + V L Y ++ V +S+V T ++ +N EYRGID+PT+VLS Sbjct: 21 LRKLEGCEEVLERVVQRLFQGRYENQQAEVSISIVSTTE--MQEINREYRGIDQPTDVLS 78 Query: 86 FPT-----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 FP F G L LGDI++ E++ A + L ++ HGFLHLLG Sbjct: 79 FPMWEEGEEFCPPSGWEMLPLGDILICEEVVRENARQNNVSYIEELYLIVAHGFLHLLGI 138 Query: 141 DH 142 DH Sbjct: 139 DH 140 >gi|295399217|ref|ZP_06809199.1| protein of unknown function UPF0054 [Geobacillus thermoglucosidasius C56-YS93] gi|294978683|gb|EFG54279.1| protein of unknown function UPF0054 [Geobacillus thermoglucosidasius C56-YS93] Length = 156 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAY 108 E+ + F D+ RI +N +YRG D+PT+V+SF + L+LGDI+++ Sbjct: 39 AEVGVSFVDNERIRIINRDYRGKDQPTDVISFALEEKGEGEIEIVGADAPLLLGDIIISI 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G F L L +HGFLHLLGYDH +++ +M ++ ILE G+ Sbjct: 99 PKAKEQAEEYGHSFMRELGFLAVHGFLHLLGYDHKTEEEEKIMFSKQKDILEQYGLT 155 >gi|328957478|ref|YP_004374864.1| putative metalloprotease [Carnobacterium sp. 17-4] gi|328673802|gb|AEB29848.1| putative metalloprotease [Carnobacterium sp. 17-4] Length = 158 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 10/120 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGCSSLMLGDI 104 E+S+ F D+ I+ +N YRG D+PT+V+SF F + + +GDI Sbjct: 37 TEMSVTFVDNENIQKINKTYRGKDQPTDVISFAIEDEAEDELMINFDTLEEPMPRNIGDI 96 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ + +A+ G F+ L L +HGFLHL GYDH+ +D M GL++ ILE G+ Sbjct: 97 IISVDKTASQADEYGHSFDRELGFLALHGFLHLNGYDHMTPEDEKEMFGLQKEILEAYGL 156 >gi|299822888|ref|ZP_07054774.1| probable metalloprotease [Listeria grayi DSM 20601] gi|299816417|gb|EFI83655.1| probable metalloprotease [Listeria grayi DSM 20601] Length = 161 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +PRL+L + E E + + FA Y E E+S+ FTD+ RI Sbjct: 1 MPRLELDMIDETEKLPKETNALVFDILQFAA--------DYLKLEEGTEMSVTFTDNERI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTA----------FASSDGCSSLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF + + LGDI+++ E E +A Sbjct: 53 REINREYRDKDQATDVISFALEELGEGETEIDWGELEVEVPRNLGDIIISTEKAEEQAAS 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HG LHLLGYDH++ ++ VM GL++ +L+ G+ Sbjct: 113 YGHTKEREVGFLAVHGLLHLLGYDHMEKEEEKVMFGLQKEVLDAYGLQ 160 >gi|262068037|ref|ZP_06027649.1| putative metalloprotease [Fusobacterium periodonticum ATCC 33693] gi|291378259|gb|EFE85777.1| putative metalloprotease [Fusobacterium periodonticum ATCC 33693] Length = 162 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 5/110 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LS++ TD+ I+ +N EYR D PT+V+SF A+ +D + LGDI+++ E +E Sbjct: 50 LSVLLTDNKNIQVINREYRDKDAPTDVISF--AYHETDDFNIGPYDTLGDIIISLERVEE 107 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +++ F+ +++ HG LH+LGYDH+++ D VM E +IL G Sbjct: 108 QSSEYNHSFKREFYYVLTHGILHILGYDHIEEDDKKVMREREEAILSSFG 157 >gi|292669777|ref|ZP_06603203.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648574|gb|EFF66546.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 153 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 8/117 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA------SSDGCSSLMLGDIVLAY 108 E+S+ TD + LN EYR +D+PT+VLSF A + +DG ++LGD+V++ Sbjct: 38 AEVSVTLTDDAHVHVLNREYRNVDRPTDVLSFALAESEEPEIIGADG--GMVLGDLVISL 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E +A G L L +HG LHLLGYDH+++++ ME +R ++E+LGI Sbjct: 96 ERTAAQAEEYGHSMLRELSFLTVHGMLHLLGYDHMEEEERLEMEEEQRHVMEELGIQ 152 >gi|125973584|ref|YP_001037494.1| hypothetical protein Cthe_1069 [Clostridium thermocellum ATCC 27405] gi|256003403|ref|ZP_05428394.1| protein of unknown function UPF0054 [Clostridium thermocellum DSM 2360] gi|281417789|ref|ZP_06248809.1| protein of unknown function UPF0054 [Clostridium thermocellum JW20] gi|166228137|sp|A3DEC2|RRMF_CLOTH RecName: Full=Probable rRNA maturation factor gi|125713809|gb|ABN52301.1| protein of unknown function UPF0054 [Clostridium thermocellum ATCC 27405] gi|255992693|gb|EEU02784.1| protein of unknown function UPF0054 [Clostridium thermocellum DSM 2360] gi|281409191|gb|EFB39449.1| protein of unknown function UPF0054 [Clostridium thermocellum JW20] gi|316940174|gb|ADU74208.1| protein of unknown function UPF0054 [Clostridium thermocellum DSM 1313] Length = 162 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 15/163 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I +EN D+I + + KA+ + F E E+S++ TD+ +I +N+ Sbjct: 1 MEIFIENI--QDKIEITDEILELMEKAIKMCLEHEKF--EYPYEVSIILTDNEKIREINY 56 Query: 73 EYRGIDKPTNVLSFPTA------FASSDGC-----SSLMLGDIVLAYEIIEIEANVLGKE 121 E R IDKPT+VLSFP SS G ++LGDI+++ E + ++ G Sbjct: 57 EQRNIDKPTDVLSFPIVDMYDGVIKSSQGDFDLDEGRIILGDILISMEKAKEQSMEYGHS 116 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE L+ L+ HG HLLGYDH + M + +IL+ L + Sbjct: 117 FERELIFLLTHGVFHLLGYDHDTPEREKKMFEKQEAILKSLNL 159 >gi|146296844|ref|YP_001180615.1| hypothetical protein Csac_1839 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166980486|sp|A4XKI9|RRMF_CALS8 RecName: Full=Probable rRNA maturation factor gi|145410420|gb|ABP67424.1| protein of unknown function UPF0054 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 158 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 10/126 (7%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC---------SSL 99 F+ + E+S++ D+ I+ LN YR IDK T+VLSFP F +G + Sbjct: 33 FMDDENYEISVMIVDNQFIKELNKHYRSIDKETDVLSFPI-FEFKNGELQEDIAIVEEEI 91 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDIV++ E +A G E + +L +H LHLLG+DH++++D +M E +L Sbjct: 92 PLGDIVISIEKAYEQAKEFGHSVEREIAYLTVHSVLHLLGFDHIEEEDRMLMRKYEEMVL 151 Query: 160 EDLGIN 165 E +G+ Sbjct: 152 EGMGLT 157 >gi|261380097|ref|ZP_05984670.1| putative metalloprotease [Neisseria subflava NJ9703] gi|284797315|gb|EFC52662.1| putative metalloprotease [Neisseria subflava NJ9703] Length = 171 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 14/125 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--------PTAFASSDGCSSLMLGDIVL 106 ++SL+ D N +YRG D TNVLSF P F SDG + GD+V+ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQF--SDG----LYGDLVI 104 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 +++ EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G + Sbjct: 105 CPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPN 164 Query: 167 PYEVD 171 PY+ D Sbjct: 165 PYQED 169 >gi|225629632|ref|ZP_03787634.1| conserved hypothetical protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591515|gb|EEH12553.1| conserved hypothetical protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 97 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 4/97 (4%) Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN ++R +DKPTNVLSFP S++ LGDI ++ + I+ E++ H+ H Sbjct: 1 QLNLKFREMDKPTNVLSFPYEQWSNESD----LGDIAISIDSIKRESHEYYIPILAHIAH 56 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +++HG HLLGYDH + +M+ LER IL LG N Sbjct: 57 MLVHGLRHLLGYDHPKKDEEIIMKNLEREILASLGYN 93 >gi|261855782|ref|YP_003263065.1| hypothetical protein Hneap_1182 [Halothiobacillus neapolitanus c2] gi|261836251|gb|ACX96018.1| protein of unknown function UPF0054 [Halothiobacillus neapolitanus c2] Length = 161 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 9/124 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLA 107 V L++ F D +LN +YR TNVLSF P AS D + LGD+++ Sbjct: 40 VALTVRFVDEEEGLSLNQQYRHKKYATNVLSFSYDAPELPEDMASGD--EPVYLGDLLIC 97 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 ++ EA K H HL++HG LHLLGYDH +A ME +E ++ LG +P Sbjct: 98 MPVVLNEAASQNKIPATHTAHLVVHGVLHLLGYDHEASAEADQMEQIEVDAMQKLGFENP 157 Query: 168 YEVD 171 Y D Sbjct: 158 YSAD 161 >gi|187925304|ref|YP_001896946.1| hypothetical protein Bphyt_3331 [Burkholderia phytofirmans PsJN] gi|238689582|sp|B2SYI7|RRMF_BURPP RecName: Full=Probable rRNA maturation factor gi|187716498|gb|ACD17722.1| protein of unknown function UPF0054 [Burkholderia phytofirmans PsJN] Length = 153 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 4/114 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ F D+ TLN YRG D TNVL+F A+A S+ + GD++L ++E EA Sbjct: 44 ELTVRFVDADEGRTLNRTYRGKDYSTNVLTF--AYAESE--DDPVTGDLILCCPVVEKEA 99 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK H HL++HG LH GYDH +++A ME +E IL LG DPY+ Sbjct: 100 AEQGKPLIAHYAHLLVHGTLHAQGYDHEVEEEAEEMEAIETEILAKLGFPDPYQ 153 >gi|289548111|ref|YP_003473099.1| hypothetical protein Thal_0337 [Thermocrinis albus DSM 14484] gi|289181728|gb|ADC88972.1| protein of unknown function UPF0054 [Thermocrinis albus DSM 14484] Length = 161 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VELSL T I LN EYRG DKPT+VLSFP S +LGDIV++++ + + Sbjct: 38 VELSLYITTDQVIRELNREYRGKDKPTDVLSFPIG---EKVGSFTLLGDIVISWDTAKKQ 94 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A G E + L +HG +HLLGYDH Sbjct: 95 AKEYGHSTEEEIKRLALHGLVHLLGYDH 122 >gi|238927459|ref|ZP_04659219.1| metal-dependent hydrolase [Selenomonas flueggei ATCC 43531] gi|238884741|gb|EEQ48379.1| metal-dependent hydrolase [Selenomonas flueggei ATCC 43531] Length = 153 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEII 111 E+S+ T+ I LN +YRG+D+PT+VLSF + D ++LGD+V++ E Sbjct: 39 EVSVTLTNDAHIHVLNRDYRGVDRPTDVLSFALTESEEPEIIDAPCGVVLGDLVISLERA 98 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G F L L +HG LHLLGYDH+++++ ME +R +++ LGI Sbjct: 99 AAQAEEYGHSFLRELSFLTVHGMLHLLGYDHIEEEERLEMEEEQRHVMDALGI 151 >gi|225075411|ref|ZP_03718610.1| hypothetical protein NEIFLAOT_00416 [Neisseria flavescens NRL30031/H210] gi|224953229|gb|EEG34438.1| hypothetical protein NEIFLAOT_00416 [Neisseria flavescens NRL30031/H210] Length = 171 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 14/125 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--------PTAFASSDGCSSLMLGDIVL 106 ++SL+ D N +YRG D TNVLSF P F SDG + GD+V+ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQF--SDG----LYGDLVI 104 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 +++ EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G + Sbjct: 105 CPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPN 164 Query: 167 PYEVD 171 PY+ D Sbjct: 165 PYQED 169 >gi|313114170|ref|ZP_07799722.1| conserved hypothetical protein TIGR00043 [Faecalibacterium cf. prausnitzii KLE1255] gi|310623579|gb|EFQ06982.1| conserved hypothetical protein TIGR00043 [Faecalibacterium cf. prausnitzii KLE1255] Length = 163 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 9/120 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS------SDGCSSLMLGDIV 105 E E+S+ F D+ I LN +YR PT+VLSFP ++GC MLGDIV Sbjct: 38 EAPAEISVTFVDNAAIAELNNQYRNKPMPTDVLSFPLGVNGKYDVDENNGCK--MLGDIV 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGI 164 ++ E + +AN+ G + + L +H LHLLGYDH + +A M E ++L LG+ Sbjct: 96 ISMERAQEQANLYGHPLQREVAFLTVHSMLHLLGYDHENGGLEAMRMREKEEAVLLQLGL 155 >gi|172037802|ref|YP_001804303.1| hypothetical protein cce_2889 [Cyanothece sp. ATCC 51142] gi|171699256|gb|ACB52237.1| hypothetical protein cce_2889 [Cyanothece sp. ATCC 51142] Length = 170 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSL 99 Y + EL+L T I +LN +YR ++PT+VL+F P D L Sbjct: 46 SYLPVASTYELTLRLTGDQEIHSLNAQYRQKNQPTDVLAFATLEWDFPKITDEPDSSEPL 105 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +GDI+++ E + +A G + L L HGFLHLLG+DH D++ M + ++L Sbjct: 106 YIGDIIISVETAQKQAQQQGHSLQRELPWLASHGFLHLLGWDHPDEQSLQKMLQQQETLL 165 Query: 160 EDLGI 164 + +G+ Sbjct: 166 KIVGL 170 >gi|312110181|ref|YP_003988497.1| hypothetical protein GY4MC1_1074 [Geobacillus sp. Y4.1MC1] gi|311215282|gb|ADP73886.1| protein of unknown function UPF0054 [Geobacillus sp. Y4.1MC1] Length = 156 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAY 108 E+ + F D+ RI +N +YRG D+PT+V+SF + L+LGDI+++ Sbjct: 39 AEVGVSFVDNERIRIINRDYRGKDQPTDVISFALEEKGEGEIEIVGADAPLLLGDIIISI 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G F L L +HGFLHLLGYDH +++ +M ++ ILE G+ Sbjct: 99 PKAKEQAEEYGHSFMRELGFLAVHGFLHLLGYDHKTEEEEKIMFSKQKDILERYGLT 155 >gi|255994494|ref|ZP_05427629.1| putative metalloprotease [Eubacterium saphenum ATCC 49989] gi|255993207|gb|EEU03296.1| putative metalloprotease [Eubacterium saphenum ATCC 49989] Length = 178 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 10/118 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------CSSLMLGDI 104 +E+S+ F I+ LN +YRG D T+VLSFP + C +MLGD+ Sbjct: 59 IEVSVSFVSEDSIKQLNLDYRGKDSITDVLSFPMISTREEFNPEYDVDLGFCDKIMLGDV 118 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 V+ +A +G+ +V+L IH LHLLG DH+D+ D +M E+ +++ L Sbjct: 119 VICLARASKQAADIGQSLSREVVYLFIHSVLHLLGMDHIDEADKEMMRSFEKKVVKKL 176 >gi|319761297|ref|YP_004125234.1| hypothetical protein Alide_0577 [Alicycliphilus denitrificans BC] gi|317115858|gb|ADU98346.1| protein of unknown function UPF0054 [Alicycliphilus denitrificans BC] Length = 150 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 17/120 (14%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-----PTAFASSDGCSSLMLGDIVLAYE 109 E+++ S LN E+R D TNVL+F PT +L D+VL Sbjct: 40 AEITVRIVGSEEGRRLNREFRRKDYATNVLTFDYQQEPT-----------VLADLVLCAP 88 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 ++E EA GK + H HL++HG LH G+DH ++DA ME E I+ +LG DPY Sbjct: 89 VVEREAREQGKTLQEHYAHLLVHGALHAQGWDHETGEQDAQEMEAYETEIMRELGFADPY 148 >gi|330823171|ref|YP_004386474.1| metalloprotease ybeY [Alicycliphilus denitrificans K601] gi|329308543|gb|AEB82958.1| metalloprotease ybeY [Alicycliphilus denitrificans K601] Length = 150 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ S LN E+R D TNVL+F + +L D+VL ++E E Sbjct: 40 AEITVRIVGSEEGRRLNREFRRKDYATNVLTFDYQQEPT------VLADLVLCAPVVERE 93 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A GK + H HL++HG LH G+DH ++DA ME E I+ +LG DPY Sbjct: 94 AREQGKTLQEHYAHLLVHGALHAQGWDHETGEQDAQEMEAYETEIMRELGFADPY 148 >gi|225378120|ref|ZP_03755341.1| hypothetical protein ROSEINA2194_03780 [Roseburia inulinivorans DSM 16841] gi|225210121|gb|EEG92475.1| hypothetical protein ROSEINA2194_03780 [Roseburia inulinivorans DSM 16841] Length = 165 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 16/125 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSSL 99 E++L D+ I +N E+R ID+PT+VLSFP + G + Sbjct: 39 EVNLTLVDNEGIHAINKEFREIDRPTDVLSFPMLSYENAGDFSKLEDDYDDNFNPDTGEI 98 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 MLGDIV++ + + +A G + LI+H LHL GYDH+ ++A VME ++ IL Sbjct: 99 MLGDIVISVDKVLEQAESYGHTTKREYAFLIVHSMLHLFGYDHMTPEEAAVMEAKQKQIL 158 Query: 160 EDLGI 164 +++ I Sbjct: 159 DEMNI 163 >gi|328465884|gb|EGF37067.1| hypothetical protein AAULH_07516 [Lactobacillus helveticus MTCC 5463] Length = 174 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 L++K K+N +E+S+ F D +R +N +YR D+PT+V+SF A DG ++ L Sbjct: 31 LLAKKEIGKDNNLEMSINFVDEYRSHEINLKYRDKDRPTDVISF----AIQDGEDAIDLS 86 Query: 102 ------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 GD+ + +I+ + G F+ + ++HGFLHL GYDH+ +A Sbjct: 87 AFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFGYTVVHGFLHLNGYDHIKPDEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LE+ G+ Sbjct: 147 EMFGIQGKVLEECGL 161 >gi|289523170|ref|ZP_06440024.1| putative metalloprotease [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503713|gb|EFD24877.1| putative metalloprotease [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 166 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 6/103 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAY 108 +E+SL R++ LN +RGID+PT+VLSFP C + LGDIV+ Sbjct: 48 IEISLTLLGPERMQELNKRHRGIDEPTDVLSFPLWEEEGTFCMPEEIAGEVSLGDIVICP 107 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 ++ A VLGK E L + +HG LHLLGYDH ++ +M Sbjct: 108 YVVAENARVLGKNPEEELKLIYVHGLLHLLGYDHATLEEEAIM 150 >gi|261366880|ref|ZP_05979763.1| putative metalloprotease [Subdoligranulum variabile DSM 15176] gi|282570994|gb|EFB76529.1| putative metalloprotease [Subdoligranulum variabile DSM 15176] Length = 166 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 9/120 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA------FASSDGCSSLMLGDIV 105 E E+S+ F D+HRI LN +YR D T+VLSFP +GC +LGDIV Sbjct: 38 EGSAEISVTFVDNHRIHELNKQYRDKDSATDVLSFPMGENGEYDIDEDNGCK--ILGDIV 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGI 164 ++ E +A + G + + +L +H LHLLGYDH +A M E ++L LG+ Sbjct: 96 ISMERAMEQAELYGHSLQREVAYLTVHSMLHLLGYDHEASGLEAVRMREKEEAVLIKLGL 155 >gi|70726347|ref|YP_253261.1| hypothetical protein SH1346 [Staphylococcus haemolyticus JCSC1435] gi|123660334|sp|Q4L6S0|RRMF_STAHJ RecName: Full=Probable rRNA maturation factor gi|68447071|dbj|BAE04655.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 153 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEII 111 ELS+ F D + I+ +N YR DK T+V+SF + M LGDI++ + Sbjct: 38 AELSVTFVDKNEIQEINKTYRDKDKVTDVISFALEEDEPEIVGLDMPRVLGDIIICTNVA 97 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E +A+ G FE L L +HGFLHLLGYDH++++D VM + +IL G+ Sbjct: 98 EEQADSFGHSFERELGFLALHGFLHLLGYDHMNEEDEKVMFSRQDTILNAYGL 150 >gi|304388236|ref|ZP_07370356.1| metal-dependent hydrolase [Neisseria meningitidis ATCC 13091] gi|304337763|gb|EFM03912.1| metal-dependent hydrolase [Neisseria meningitidis ATCC 13091] Length = 211 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 91 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 150 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 151 KEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 209 >gi|242242843|ref|ZP_04797288.1| possible metal-dependent hydrolase [Staphylococcus epidermidis W23144] gi|242233706|gb|EES36018.1| possible metal-dependent hydrolase [Staphylococcus epidermidis W23144] Length = 155 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 8/122 (6%) Query: 51 KENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLG 102 KENI ELS+ D I+ +N YR DK T+V+SF +D +LG Sbjct: 31 KENIHNDAELSVTLVDKEEIQNINKVYRDKDKVTDVISFALEEDEPEIDFNDFDIPRVLG 90 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI++ ++ + +A G FE L L +HGFLHLLGYDH++D D M G + +IL + Sbjct: 91 DIIICTDVAKEQAESYGHSFERELGFLALHGFLHLLGYDHMNDNDEKEMFGRQDAILNEF 150 Query: 163 GI 164 G+ Sbjct: 151 GL 152 >gi|153953547|ref|YP_001394312.1| metalloprotease [Clostridium kluyveri DSM 555] gi|219854169|ref|YP_002471291.1| hypothetical protein CKR_0826 [Clostridium kluyveri NBRC 12016] gi|189040636|sp|A5N6N3|RRMF_CLOK5 RecName: Full=Probable rRNA maturation factor gi|254806620|sp|B9E052|RRMF_CLOK1 RecName: Full=Probable rRNA maturation factor gi|146346428|gb|EDK32964.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219567893|dbj|BAH05877.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 164 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 21/124 (16%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------------------TAFASSDGC 96 E+S+VF D+ I+ +N E R ID+ T+VLSFP + +DG Sbjct: 39 EISVVFVDNENIKDINRENRNIDRVTDVLSFPMLEYPESKVFKEVYLNYKFPEYDMNDG- 97 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +L+LGDIV++ E E ++ G F +LI+H LHLLGYDH +D D +M E Sbjct: 98 -NLVLGDIVVSLEKCEEQSREFGHSFFRETCYLIVHSVLHLLGYDHTEDSDKKIMREREE 156 Query: 157 SILE 160 IL+ Sbjct: 157 YILK 160 >gi|210612672|ref|ZP_03289420.1| hypothetical protein CLONEX_01622 [Clostridium nexile DSM 1787] gi|210151474|gb|EEA82482.1| hypothetical protein CLONEX_01622 [Clostridium nexile DSM 1787] Length = 164 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 15/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS---------------L 99 E++L+ T + I+ +N +RGID+ T+VLSFP + G S L Sbjct: 38 AEVNLLLTMNDEIQEMNRNFRGIDRATDVLSFPMVDYETAGSFSFLEDALEYFNPESGEL 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 MLGDIV++ E + +A G E LI H LHL G+DH+++++ VME + IL Sbjct: 98 MLGDIVISKEKVVSQAEEYGHSIEREYAFLIAHSMLHLFGFDHMEEEERAVMERKQAEIL 157 Query: 160 EDLGI 164 E L I Sbjct: 158 ERLQI 162 >gi|331270001|ref|YP_004396493.1| hypothetical protein CbC4_1822 [Clostridium botulinum BKT015925] gi|329126551|gb|AEB76496.1| protein of unknown function UPF0054 [Clostridium botulinum BKT015925] Length = 166 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 73/145 (50%), Gaps = 18/145 (12%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------- 88 K + N K VK N E+S++F D+ I+ +N E R IDK T+VLSFP Sbjct: 21 VKEIINYTLKEEEVKVN-TEVSVIFIDNSTIKEINKETRDIDKVTDVLSFPMLDYLQGKI 79 Query: 89 --------AF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 F AS L+LGDIVL+ E E ++ G F + +L +H LHLLG Sbjct: 80 YKETYKDYEFDASYLDEGELVLGDIVLSLERAEEQSKDFGHSFLREVCYLTVHSVLHLLG 139 Query: 140 YDHVDDKDACVMEGLERSILEDLGI 164 YDH++++D M E ILE I Sbjct: 140 YDHMEEEDKVRMRKREEEILEKFSI 164 >gi|163791431|ref|ZP_02185840.1| hypothetical protein CAT7_03124 [Carnobacterium sp. AT7] gi|159873295|gb|EDP67390.1| hypothetical protein CAT7_03124 [Carnobacterium sp. AT7] Length = 158 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGCSSLMLGDI 104 E+S+ F D+ I+ +N YRG D+PT+V+SF F D +GDI Sbjct: 37 TEMSVTFVDNENIQKINKTYRGKDQPTDVISFAIEDEVEDELMINFDELDEPMPRNIGDI 96 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ + +A F+ L L +HGFLHL GYDH++ +D M GL++ ILE G+ Sbjct: 97 IISVDKTASQAKEYNHSFDRELGFLALHGFLHLNGYDHMNPEDEKEMFGLQKEILEAYGL 156 >gi|121634333|ref|YP_974578.1| hypothetical protein NMC0477 [Neisseria meningitidis FAM18] gi|166227285|sp|A1KSE7|RRMF_NEIMF RecName: Full=Probable rRNA maturation factor gi|120866039|emb|CAM09777.1| hypothetical protein NMC0477 [Neisseria meningitidis FAM18] gi|325131788|gb|EGC54489.1| hypothetical protein TIGR00043 [Neisseria meningitidis M6190] gi|325137678|gb|EGC60255.1| hypothetical protein TIGR00043 [Neisseria meningitidis ES14902] Length = 171 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 111 KEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 169 >gi|291563244|emb|CBL42060.1| conserved hypothetical protein TIGR00043 [butyrate-producing bacterium SS3/4] Length = 165 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 16/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E++++ TD+ I +N + RGID PT+VLSFP + G Sbjct: 38 AEVNVLLTDNAGIHQINLDMRGIDNPTDVLSFPMCDFETPGDFSHLEETPEEYFDPDTGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L++GDIV++ + ++ +A G L L+ H LHL GYDH++D + ME ++R I Sbjct: 98 LLMGDIVISVDKVKEQAEKYGHSQTRELAFLVAHSMLHLSGYDHMEDDERIQMEDMQREI 157 Query: 159 LEDLG 163 LE G Sbjct: 158 LERRG 162 >gi|261393091|emb|CAX50688.1| conserved hypothetical protein [Neisseria meningitidis 8013] gi|325202673|gb|ADY98127.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis M01-240149] gi|325203629|gb|ADY99082.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis M01-240355] gi|325207581|gb|ADZ03033.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis NZ-05/33] Length = 171 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 111 KEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 169 >gi|253732223|ref|ZP_04866388.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724012|gb|EES92741.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 155 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 9/121 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FASSDGCSSLMLGDI 104 E+ ELS+ F D I+ +N YR DK T+V+SF F+ D +LGDI Sbjct: 35 EDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLD--IPRVLGDI 92 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ ++ + +AN G FE L L +HGFLHLLGYDH+ + D M G + +IL G+ Sbjct: 93 IICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGL 152 Query: 165 N 165 Sbjct: 153 T 153 >gi|21283251|ref|NP_646339.1| hypothetical protein MW1522 [Staphylococcus aureus subsp. aureus MW2] gi|49486405|ref|YP_043626.1| hypothetical protein SAS1508 [Staphylococcus aureus subsp. aureus MSSA476] gi|253733180|ref|ZP_04867345.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH130] gi|300911792|ref|ZP_07129235.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH70] gi|26006922|sp|Q8NWB4|RRMF_STAAW RecName: Full=Probable rRNA maturation factor gi|56749708|sp|Q6G8Z7|RRMF_STAAS RecName: Full=Probable rRNA maturation factor gi|21204691|dbj|BAB95387.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244848|emb|CAG43309.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253728720|gb|EES97449.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH130] gi|300886038|gb|EFK81240.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH70] Length = 155 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 9/121 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FASSDGCSSLMLGDI 104 E+ ELS+ F D I+ +N YR DK T+V+SF F+ D +LGDI Sbjct: 35 EDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLD--IPRVLGDI 92 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ ++ + +AN G FE L L +HGFLHLLGYDH+ + D M G + +IL G+ Sbjct: 93 IICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGL 152 Query: 165 N 165 Sbjct: 153 T 153 >gi|297207711|ref|ZP_06924146.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887728|gb|EFH26626.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 155 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 9/121 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FASSDGCSSLMLGDI 104 E+ ELS+ F D I+ +N YR DK T+V+SF F+ D +LGDI Sbjct: 35 EDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDVPEIDFSGLD--IPRVLGDI 92 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ ++ + +AN G FE L L +HGFLHLLGYDH+ + D M G + +IL G+ Sbjct: 93 IICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGL 152 Query: 165 N 165 Sbjct: 153 T 153 >gi|152981675|ref|YP_001352119.1| hypothetical protein mma_0429 [Janthinobacterium sp. Marseille] gi|172049086|sp|A6SV22|RRMF_JANMA RecName: Full=Probable rRNA maturation factor gi|151281752|gb|ABR90162.1| Hypothetical protein mma_0429 [Janthinobacterium sp. Marseille] Length = 152 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +++L F D+ + LN YRG D TNVL+F + D S DI+L +++++E Sbjct: 39 AQITLRFVDAAEGKDLNRNYRGKDYATNVLTFAY---TEDEDSETTQADIILCTDVLQLE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A K E H HL++HG LH GYDH D++A ME LE IL DLG +PY Sbjct: 96 AAEQEKSVEEHAAHLVVHGVLHAQGYDHESDEEAEEMEALEIEILADLGFRNPY 149 >gi|313897363|ref|ZP_07830906.1| translation metalloprotein YbeY [Clostridium sp. HGF2] gi|312957733|gb|EFR39358.1| translation metalloprotein YbeY [Clostridium sp. HGF2] Length = 155 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 7/116 (6%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVL 106 E + S++F I +N +YRGID+PT+V+SF A S+ +M LGDI + Sbjct: 35 EGLRSASVIFVTPQMIHEMNRDYRGIDRPTDVISF--AMKDSEDAYEVMEGEEELGDIFI 92 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E I +A G + L HG LHLLGYDH+ +D VM L+ IL+D+ Sbjct: 93 NIEAISAQAADYGHSLRREVCFLFTHGLLHLLGYDHMTPEDEAVMFQLQDVILDDI 148 >gi|227513293|ref|ZP_03943342.1| metal-dependent hydrolase [Lactobacillus buchneri ATCC 11577] gi|227083494|gb|EEI18806.1| metal-dependent hydrolase [Lactobacillus buchneri ATCC 11577] Length = 161 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 12/122 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML------------G 102 E+S+ +++ I +N EYRG+D+ T+V+SF + D +++ G Sbjct: 38 TEMSVTLVNNNEIHKINREYRGVDRATDVISFAIEDEAEDDDFPIVMDEDMQESIPENIG 97 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI ++ + + +A+ LG F+ L L++HGFLHL GYDH++ DA +M L++ IL Sbjct: 98 DIFVSVDKVAEQADYLGHSFQRELGFLVVHGFLHLNGYDHMEKADADIMFPLQKEILNAY 157 Query: 163 GI 164 G+ Sbjct: 158 GL 159 >gi|226311650|ref|YP_002771544.1| hypothetical protein BBR47_20630 [Brevibacillus brevis NBRC 100599] gi|254801535|sp|C0ZB81|RRMF_BREBN RecName: Full=Probable rRNA maturation factor gi|226094598|dbj|BAH43040.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 159 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 11/121 (9%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---------FASSDGCSSL--MLGDI 104 E+ + ++ RI LN +YRG+D+PT+VLSF F D S MLGDI Sbjct: 38 EVVVTLVNNERIHELNRDYRGVDRPTDVLSFAMNEPGEGEMEIFIDEDEASEFPNMLGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ +A G FE L L +HGFLHLLGYDH ++ M + +LE++G+ Sbjct: 98 IISVPKAHEQAEDYGHSFERELGFLTVHGFLHLLGYDHGTPEEEKEMFSRQEKVLEEIGL 157 Query: 165 N 165 Sbjct: 158 T 158 >gi|119493099|ref|ZP_01624024.1| hypothetical protein L8106_27841 [Lyngbya sp. PCC 8106] gi|119452844|gb|EAW34019.1| hypothetical protein L8106_27841 [Lyngbya sp. PCC 8106] Length = 196 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 8/117 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--------AFASSDGCSSLMLGDIVLA 107 EL+L TD+ I+ LN +YR +D PT+VL+F T + SL LGD+V++ Sbjct: 69 ELNLRLTDNTEIQQLNAQYRSLDVPTDVLAFATLEVGFPKLPASEMKASQSLDLGDLVIS 128 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E +A G + L L HGFLHLLG+DH DD+ M + +L+ +G+ Sbjct: 129 VETAARQAQQQGHSLKIELGWLAAHGFLHLLGWDHPDDRTLIQMLDQQVIMLQSVGL 185 >gi|325135872|gb|EGC58484.1| hypothetical protein TIGR00043 [Neisseria meningitidis M0579] Length = 171 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 111 KEAAEQGKTPERHFTHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 169 >gi|37520812|ref|NP_924189.1| putative metalloprotease [Gloeobacter violaceus PCC 7421] gi|46577366|sp|Q7NL83|RRMF_GLOVI RecName: Full=Probable rRNA maturation factor gi|35211807|dbj|BAC89184.1| gll1243 [Gloeobacter violaceus PCC 7421] Length = 194 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 9/120 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-----SLMLGDIVLAYE 109 VEL+L TD I LN +RG+D PT+VLSF F + D + L LGDIV++ Sbjct: 71 VELTLRLTDDAEIRRLNARFRGVDAPTDVLSF--EFEADDTQALIAEEPLYLGDIVVSVP 128 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +A G E L L +HG LHLLG+DH D++ M + +L+ G+N Y+ Sbjct: 129 TATRQAREFGHTLEVELAWLAVHGLLHLLGWDHPDEQSWRAMVTQQARLLK--GVNVVYD 186 >gi|15924560|ref|NP_372094.1| hypothetical protein SAV1570 [Staphylococcus aureus subsp. aureus Mu50] gi|15927150|ref|NP_374683.1| hypothetical protein SA1399 [Staphylococcus aureus subsp. aureus N315] gi|57651963|ref|YP_186467.1| hypothetical protein SACOL1627 [Staphylococcus aureus subsp. aureus COL] gi|87160129|ref|YP_494225.1| hypothetical protein SAUSA300_1530 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195379|ref|YP_500183.1| hypothetical protein SAOUHSC_01672 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268054|ref|YP_001246997.1| hypothetical protein SaurJH9_1628 [Staphylococcus aureus subsp. aureus JH9] gi|150394122|ref|YP_001316797.1| hypothetical protein SaurJH1_1662 [Staphylococcus aureus subsp. aureus JH1] gi|151221685|ref|YP_001332507.1| hypothetical protein NWMN_1473 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979888|ref|YP_001442147.1| hypothetical protein SAHV_1557 [Staphylococcus aureus subsp. aureus Mu3] gi|161509798|ref|YP_001575457.1| hypothetical protein USA300HOU_1571 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140010|ref|ZP_03564503.1| hypothetical protein SauraJ_00070 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316045|ref|ZP_04839258.1| hypothetical protein SauraC_07852 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006356|ref|ZP_05144957.2| hypothetical protein SauraM_07805 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793646|ref|ZP_05642625.1| metalloprotease [Staphylococcus aureus A9781] gi|258411054|ref|ZP_05681334.1| metalloprotease [Staphylococcus aureus A9763] gi|258420142|ref|ZP_05683097.1| metalloprotease [Staphylococcus aureus A9719] gi|258437402|ref|ZP_05689386.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443608|ref|ZP_05691947.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446815|ref|ZP_05694969.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258448729|ref|ZP_05696841.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258450601|ref|ZP_05698663.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258453546|ref|ZP_05701524.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049144|ref|ZP_06022021.1| hypothetical protein SAD30_0301 [Staphylococcus aureus D30] gi|262051230|ref|ZP_06023454.1| hypothetical protein SA930_1661 [Staphylococcus aureus 930918-3] gi|269203198|ref|YP_003282467.1| hypothetical protein SAAV_1562 [Staphylococcus aureus subsp. aureus ED98] gi|282893071|ref|ZP_06301305.1| metalloprotease [Staphylococcus aureus A8117] gi|282920119|ref|ZP_06327844.1| metalloprotease [Staphylococcus aureus A9765] gi|282928203|ref|ZP_06335808.1| metalloprotease [Staphylococcus aureus A10102] gi|284024629|ref|ZP_06379027.1| hypothetical protein Saura13_08560 [Staphylococcus aureus subsp. aureus 132] gi|294848601|ref|ZP_06789347.1| metalloprotease [Staphylococcus aureus A9754] gi|295406693|ref|ZP_06816498.1| metalloprotease [Staphylococcus aureus A8819] gi|296275808|ref|ZP_06858315.1| hypothetical protein SauraMR_05652 [Staphylococcus aureus subsp. aureus MR1] gi|297245725|ref|ZP_06929590.1| metalloprotease [Staphylococcus aureus A8796] gi|304380841|ref|ZP_07363501.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54040164|sp|P67137|RRMF_STAAN RecName: Full=Probable rRNA maturation factor gi|54042633|sp|P67136|RRMF_STAAM RecName: Full=Probable rRNA maturation factor gi|62901407|sp|Q5HFJ0|RRMF_STAAC RecName: Full=Probable rRNA maturation factor gi|122539405|sp|Q2FY02|RRMF_STAA8 RecName: Full=Probable rRNA maturation factor gi|123485628|sp|Q2FGF3|RRMF_STAA3 RecName: Full=Probable rRNA maturation factor gi|166231407|sp|A7X2W8|RRMF_STAA1 RecName: Full=Probable rRNA maturation factor gi|172048907|sp|A6QHB3|RRMF_STAAE RecName: Full=Probable rRNA maturation factor gi|189038954|sp|A8Z4A9|RRMF_STAAT RecName: Full=Probable rRNA maturation factor gi|189038968|sp|A5IT98|RRMF_STAA9 RecName: Full=Probable rRNA maturation factor gi|189038976|sp|A6U242|RRMF_STAA2 RecName: Full=Probable rRNA maturation factor gi|13701368|dbj|BAB42662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247341|dbj|BAB57732.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|57286149|gb|AAW38243.1| conserved hypothetical protein TIGR00043 [Staphylococcus aureus subsp. aureus COL] gi|87126103|gb|ABD20617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202937|gb|ABD30747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741123|gb|ABQ49421.1| protein of unknown function UPF0054 [Staphylococcus aureus subsp. aureus JH9] gi|149946574|gb|ABR52510.1| protein of unknown function UPF0054 [Staphylococcus aureus subsp. aureus JH1] gi|150374485|dbj|BAF67745.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722023|dbj|BAF78440.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368607|gb|ABX29578.1| hypothetical protein USA300HOU_1571 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257787618|gb|EEV25958.1| metalloprotease [Staphylococcus aureus A9781] gi|257840204|gb|EEV64668.1| metalloprotease [Staphylococcus aureus A9763] gi|257843853|gb|EEV68247.1| metalloprotease [Staphylococcus aureus A9719] gi|257848607|gb|EEV72595.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851014|gb|EEV74957.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854390|gb|EEV77339.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257858007|gb|EEV80896.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257861759|gb|EEV84558.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257864277|gb|EEV87027.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259160867|gb|EEW45887.1| hypothetical protein SA930_1661 [Staphylococcus aureus 930918-3] gi|259162813|gb|EEW47378.1| hypothetical protein SAD30_0301 [Staphylococcus aureus D30] gi|262075488|gb|ACY11461.1| hypothetical protein SAAV_1562 [Staphylococcus aureus subsp. aureus ED98] gi|269941060|emb|CBI49444.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282590010|gb|EFB95092.1| metalloprotease [Staphylococcus aureus A10102] gi|282594467|gb|EFB99452.1| metalloprotease [Staphylococcus aureus A9765] gi|282764389|gb|EFC04515.1| metalloprotease [Staphylococcus aureus A8117] gi|285817252|gb|ADC37739.1| predicted metal-dependent hydrolase [Staphylococcus aureus 04-02981] gi|294824627|gb|EFG41050.1| metalloprotease [Staphylococcus aureus A9754] gi|294968440|gb|EFG44464.1| metalloprotease [Staphylococcus aureus A8819] gi|297177376|gb|EFH36628.1| metalloprotease [Staphylococcus aureus A8796] gi|302751400|gb|ADL65577.1| putative metalloprotease [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340568|gb|EFM06502.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829958|emb|CBX34800.1| uncharacterized protein family UPF0054 family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129849|gb|EFT85839.1| hypothetical protein CGSSa03_02148 [Staphylococcus aureus subsp. aureus CGS03] gi|315198734|gb|EFU29062.1| hypothetical protein CGSSa01_09439 [Staphylococcus aureus subsp. aureus CGS01] gi|320140545|gb|EFW32399.1| conserved hypothetical protein TIGR00043 [Staphylococcus aureus subsp. aureus MRSA131] gi|320144082|gb|EFW35851.1| conserved hypothetical protein TIGR00043 [Staphylococcus aureus subsp. aureus MRSA177] gi|329314246|gb|AEB88659.1| Putative metalloprotease [Staphylococcus aureus subsp. aureus T0131] gi|329727414|gb|EGG63870.1| translation metalloprotein YbeY [Staphylococcus aureus subsp. aureus 21172] gi|329728375|gb|EGG64812.1| translation metalloprotein YbeY [Staphylococcus aureus subsp. aureus 21189] Length = 155 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 9/121 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FASSDGCSSLMLGDI 104 E+ ELS+ F D I+ +N YR DK T+V+SF F+ D +LGDI Sbjct: 35 EDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLD--IPRVLGDI 92 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ ++ + +AN G FE L L +HGFLHLLGYDH+ + D M G + +IL G+ Sbjct: 93 IICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGL 152 Query: 165 N 165 Sbjct: 153 T 153 >gi|291545856|emb|CBL18964.1| conserved hypothetical protein TIGR00043 [Ruminococcus sp. SR1/5] Length = 164 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 15/125 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCS--------------SLM 100 +++LV TD+ I+ +N E+R I PT+VLSFP F + S L+ Sbjct: 39 QVNLVLTDNEEIKRVNTEFRNIQAPTDVLSFPMIPFETPADYSVVEEDESYFDLDSDELL 98 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDI+++ + +A G L+ H LHLLGYDH+ + +A VME + + L+ Sbjct: 99 LGDIMISVPKVFAQAEEYGHSVTREFCFLVAHSMLHLLGYDHMTEDEAKVMEAKQAAALK 158 Query: 161 DLGIN 165 +LGIN Sbjct: 159 ELGIN 163 >gi|254804422|ref|YP_003082643.1| hypothetical protein NMO_0420 [Neisseria meningitidis alpha14] gi|254667965|emb|CBA04232.1| conserved hypothetical protein [Neisseria meningitidis alpha14] Length = 251 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 131 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 190 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 191 KEAAEQGKTPERHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 249 >gi|315161671|gb|EFU05688.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0645] Length = 159 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 13/141 (9%) Query: 38 KAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K + NL+ + G+ E+S+ FTD+ I+ +N +YRG D PT+V+SF D Sbjct: 18 KEIENLLQLAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKDMPTDVISFALEDEGEDE 77 Query: 96 CSSLM-----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + LGD++++ E +A G E + L +HGFLHL GYDH++ Sbjct: 78 LPIIFDDEELAELPRNLGDLIISTERAAEQAFEYGHTLEREMGFLAVHGFLHLNGYDHME 137 Query: 145 DKDACVMEGLERSILEDLGIN 165 +D M GL++ IL+ G+ Sbjct: 138 PEDEKEMFGLQKEILDAYGLK 158 >gi|253576079|ref|ZP_04853411.1| cytidine deaminase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844422|gb|EES72438.1| cytidine deaminase [Paenibacillus sp. oral taxon 786 str. D14] Length = 165 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 14/123 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLML 101 E++L F D I LN +YRGID+PT+VLSF + + + ML Sbjct: 41 EVALTFVDDEAIHELNRDYRGIDRPTDVLSFAMNESLEEEPEIVYELEEDEELDDMTEML 100 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI+++ E + ++ G E + L +HGFLHLLGYDH D M G + + L + Sbjct: 101 GDIIISVERAKAQSEEYGHSLEREIGFLFVHGFLHLLGYDHQDAVSEAEMMGKQEAALAE 160 Query: 162 LGI 164 +G+ Sbjct: 161 VGL 163 >gi|121595993|ref|YP_987889.1| hypothetical protein Ajs_3702 [Acidovorax sp. JS42] gi|145558816|sp|A1WC38|RRMF_ACISJ RecName: Full=Probable rRNA maturation factor gi|120608073|gb|ABM43813.1| protein of unknown function UPF0054 [Acidovorax sp. JS42] Length = 152 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ + + LN E+R D TNVL+F + + D+VL ++E E Sbjct: 42 AEITVRIVGAEEGQRLNREFRHKDYATNVLTFDY------QQEPVAVADLVLCAPVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A K E H HL++HG LH G+DH ++DA ME E +IL++LG DPY Sbjct: 96 AREQNKTLEEHYAHLLVHGTLHAQGWDHETSEQDAQEMEAYETAILQELGFADPY 150 >gi|254303748|ref|ZP_04971106.1| possible metal dependent hydrolase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323940|gb|EDK89190.1| possible metal dependent hydrolase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 162 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 5/110 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LSL+ T++ I+ +N EYR D PT+V+SF A+ ++ + LGDI+++ E +E Sbjct: 50 LSLLLTNNENIQVINREYRDKDAPTDVISF--AYHETEDFNIGPYDTLGDIIISLERVEE 107 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A+ FE +++ HG LH+LGYDH+++ D +M E +IL G Sbjct: 108 QASEYNHSFEREFYYVLTHGILHILGYDHIEEDDKKLMREREEAILSSFG 157 >gi|309805177|ref|ZP_07699229.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 09V1-c] gi|329920078|ref|ZP_08276909.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 1401G] gi|308165411|gb|EFO67642.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 09V1-c] gi|328936532|gb|EGG32976.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 1401G] Length = 175 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-- 100 L +K K N E+S+ F + ++I +N YRG D+PT+V+SF A DG + + Sbjct: 31 LSAKKNIKKTNRQEMSINFVNINKIHEINKNYRGKDRPTDVISF----AIEDGTDNDLFA 86 Query: 101 -----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 +GD+ + E++E A F + ++HG+LHL GYDH+ D +A Sbjct: 87 QFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFGYTLVHGYLHLNGYDHIQDDEAE 146 Query: 150 VMEGLERSILEDLGI 164 VM G++ +LE+ G+ Sbjct: 147 VMFGIQSKVLEEYGL 161 >gi|25091585|sp|Q8K9C1|RRMF_BUCAP RecName: Full=Probable rRNA maturation factor Length = 158 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 2/125 (1%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD 103 I K + K+N+ +++ D ++ +N +YRG +K TN+LSF F + +LGD Sbjct: 31 IKKVLYKKKNVNLINIRIVDEREMKNINLKYRGKNKSTNILSF--KFDLFINKNQTLLGD 88 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +VL +IIE E+ K E+ H+IIHG LHLLGYDH + K+ +ME +E I+ L Sbjct: 89 LVLCKKIIEKESLKYQKTLESRWAHMIIHGTLHLLGYDHKNKKEKKIMEKIENKIMLFLN 148 Query: 164 INDPY 168 PY Sbjct: 149 YEKPY 153 >gi|300853994|ref|YP_003778978.1| hypothetical protein CLJU_c08080 [Clostridium ljungdahlii DSM 13528] gi|300434109|gb|ADK13876.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 164 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 17/121 (14%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSD-GCSS 98 E+S++F D+ I+ +N E R IDK T+VLSFP F SD + Sbjct: 39 EISVIFIDNEEIKNINRENRNIDKVTDVLSFPMLEYPEGSVFKQVYVNHEFEESDMDDGN 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDI L+ E E +A G F +L +H LHLLGYDH+++ D +M E I Sbjct: 99 LVLGDIALSLERAEEQAQEFGHSFLREACYLTVHSVLHLLGYDHMEESDKKIMRQREEEI 158 Query: 159 L 159 L Sbjct: 159 L 159 >gi|256963579|ref|ZP_05567750.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257079644|ref|ZP_05574005.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|294780924|ref|ZP_06746278.1| metalloprotein, YbeY family [Enterococcus faecalis PC1.1] gi|307270831|ref|ZP_07552119.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX4248] gi|307271518|ref|ZP_07552790.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0855] gi|312899841|ref|ZP_07759160.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0470] gi|256954075|gb|EEU70707.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256987674|gb|EEU74976.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|294452050|gb|EFG20498.1| metalloprotein, YbeY family [Enterococcus faecalis PC1.1] gi|306511790|gb|EFM80788.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0855] gi|306512832|gb|EFM81476.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX4248] gi|311293091|gb|EFQ71647.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0470] Length = 159 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 13/141 (9%) Query: 38 KAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K + NL+ + G+ E+S+ FTD+ I+ +N +YRG D PT+V+SF D Sbjct: 18 KEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKDMPTDVISFALEDEGEDE 77 Query: 96 CSSLM-----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + LGD++++ E +A G E + L +HGFLHL GYDH++ Sbjct: 78 LPIIFDDEELAELPRNLGDLIISTERAAEQAFEYGHTLEREMGFLAVHGFLHLNGYDHME 137 Query: 145 DKDACVMEGLERSILEDLGIN 165 +D M GL++ IL+ G+ Sbjct: 138 PEDEKEMFGLQKEILDAYGLK 158 >gi|241766518|ref|ZP_04764382.1| protein of unknown function UPF0054 [Acidovorax delafieldii 2AN] gi|241363251|gb|EER58810.1| protein of unknown function UPF0054 [Acidovorax delafieldii 2AN] Length = 152 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D+ + LN +YR D TNVL+F A +++ D+VL ++E E Sbjct: 42 AEITVRIVDADEGQALNRDYRHKDYATNVLTFDYA------QEPVVMADLVLCAPVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A K E H HL++HG LH G+DH DA ME E IL+ LG DPY Sbjct: 96 AREQNKTLEEHYAHLLVHGTLHAQGWDHETSATDAEEMEAYETDILQALGFADPY 150 >gi|325143901|gb|EGC66213.1| hypothetical protein TIGR00043 [Neisseria meningitidis M01-240013] gi|325206610|gb|ADZ02063.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis M04-240196] Length = 171 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 111 KEAAEQGKTPERHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 169 >gi|227519870|ref|ZP_03949919.1| metalloprotease [Enterococcus faecalis TX0104] gi|229545167|ref|ZP_04433892.1| metalloprotease [Enterococcus faecalis TX1322] gi|229549416|ref|ZP_04438141.1| metalloprotease [Enterococcus faecalis ATCC 29200] gi|255972120|ref|ZP_05422706.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255975187|ref|ZP_05425773.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256617031|ref|ZP_05473877.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256763105|ref|ZP_05503685.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256853773|ref|ZP_05559138.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256956689|ref|ZP_05560860.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256961294|ref|ZP_05565465.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|257082010|ref|ZP_05576371.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257084561|ref|ZP_05578922.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257087443|ref|ZP_05581804.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257416650|ref|ZP_05593644.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257419866|ref|ZP_05596860.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257421946|ref|ZP_05598936.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|293383578|ref|ZP_06629488.1| putative metalloprotease [Enterococcus faecalis R712] gi|293387309|ref|ZP_06631865.1| putative metalloprotease [Enterococcus faecalis S613] gi|300860151|ref|ZP_07106238.1| translation metalloprotein YbeY [Enterococcus faecalis TUSoD Ef11] gi|307277154|ref|ZP_07558258.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX2134] gi|307285806|ref|ZP_07565940.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0860] gi|307287709|ref|ZP_07567752.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0109] gi|307290536|ref|ZP_07570448.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0411] gi|312906128|ref|ZP_07765140.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 512] gi|312909474|ref|ZP_07768329.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 516] gi|312953491|ref|ZP_07772331.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0102] gi|227072664|gb|EEI10627.1| metalloprotease [Enterococcus faecalis TX0104] gi|229305653|gb|EEN71649.1| metalloprotease [Enterococcus faecalis ATCC 29200] gi|229309712|gb|EEN75699.1| metalloprotease [Enterococcus faecalis TX1322] gi|255963138|gb|EET95614.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968059|gb|EET98681.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256596558|gb|EEU15734.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256684356|gb|EEU24051.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256710716|gb|EEU25759.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256947185|gb|EEU63817.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256951790|gb|EEU68422.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256990040|gb|EEU77342.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256992591|gb|EEU79893.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256995473|gb|EEU82775.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257158478|gb|EEU88438.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|257161694|gb|EEU91654.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257163770|gb|EEU93730.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|291079090|gb|EFE16454.1| putative metalloprotease [Enterococcus faecalis R712] gi|291083207|gb|EFE20170.1| putative metalloprotease [Enterococcus faecalis S613] gi|295113466|emb|CBL32103.1| conserved hypothetical protein TIGR00043 [Enterococcus sp. 7L76] gi|300849190|gb|EFK76940.1| translation metalloprotein YbeY [Enterococcus faecalis TUSoD Ef11] gi|306498391|gb|EFM67896.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0411] gi|306501447|gb|EFM70750.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0109] gi|306502567|gb|EFM71834.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0860] gi|306506084|gb|EFM75250.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX2134] gi|310627774|gb|EFQ11057.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 512] gi|310628700|gb|EFQ11983.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0102] gi|311290147|gb|EFQ68703.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 516] gi|315025401|gb|EFT37333.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX2137] gi|315030209|gb|EFT42141.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX4000] gi|315032905|gb|EFT44837.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0017] gi|315035611|gb|EFT47543.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0027] gi|315144803|gb|EFT88819.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX2141] gi|315150149|gb|EFT94165.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0012] gi|315152158|gb|EFT96174.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0031] gi|315155345|gb|EFT99361.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0043] gi|315159079|gb|EFU03096.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0312] gi|315164808|gb|EFU08825.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1302] gi|315166394|gb|EFU10411.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1341] gi|315170290|gb|EFU14307.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1342] gi|315173675|gb|EFU17692.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1346] gi|327535697|gb|AEA94531.1| putative metalloprotease [Enterococcus faecalis OG1RF] Length = 159 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 13/141 (9%) Query: 38 KAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K + NL+ + G+ E+S+ FTD+ I+ +N +YRG D PT+V+SF D Sbjct: 18 KEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKDMPTDVISFALEDEGEDE 77 Query: 96 CSSLM-----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + LGD++++ E +A G E + L +HGFLHL GYDH++ Sbjct: 78 LPIIFDDEELAELPRNLGDLIISTERAAEQAVEYGHTLEREMGFLAVHGFLHLNGYDHME 137 Query: 145 DKDACVMEGLERSILEDLGIN 165 +D M GL++ IL+ G+ Sbjct: 138 PEDEKEMFGLQKEILDAYGLK 158 >gi|29376907|ref|NP_816061.1| putative metalloprotease [Enterococcus faecalis V583] gi|227553943|ref|ZP_03983990.1| metalloprotease [Enterococcus faecalis HH22] gi|46577437|sp|Q831T7|RRMF_ENTFA RecName: Full=Probable rRNA maturation factor gi|29344372|gb|AAO82131.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis V583] gi|227176929|gb|EEI57901.1| metalloprotease [Enterococcus faecalis HH22] gi|315574356|gb|EFU86547.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0309B] gi|315580169|gb|EFU92360.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0309A] Length = 159 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 13/141 (9%) Query: 38 KAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K + NL+ + G+ E+S+ FTD+ I+ +N +YRG D PT+V+SF D Sbjct: 18 KEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQMINRDYRGKDMPTDVISFALEDEGEDE 77 Query: 96 CSSLM-----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + LGD++++ E +A G E + L +HGFLHL GYDH++ Sbjct: 78 LPIIFDDEELAELPRNLGDLIISTERAAEQAVEYGHTLEREMGFLAVHGFLHLNGYDHME 137 Query: 145 DKDACVMEGLERSILEDLGIN 165 +D M GL++ IL+ G+ Sbjct: 138 PEDEKEMFGLQKEILDAYGLK 158 >gi|319935426|ref|ZP_08009863.1| metalloprotease [Coprobacillus sp. 29_1] gi|319809642|gb|EFW06055.1| metalloprotease [Coprobacillus sp. 29_1] Length = 153 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 77/149 (51%), Gaps = 9/149 (6%) Query: 21 LWGDEIHL-RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 ++ DE+ L + E F K V + Y E+ VELS + D RI +N EYR ID+ Sbjct: 6 VYEDELKLSKDNYEQQFIKIVEAALQ--YLKIEDDVELSCIIVDDERIHEINKEYRNIDR 63 Query: 80 PTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 T+V+SF A +D LGDI ++Y I+A + + L HG L Sbjct: 64 STDVISF--ALEDNDQFYVAGMPRSLGDIFISYHHACIQAEEYQHTLKREMCFLFTHGLL 121 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH++++D M L++ IL LGI Sbjct: 122 HLLGYDHMNEEDEKEMFTLQKEILNQLGI 150 >gi|332799066|ref|YP_004460565.1| metalloprotease ybeY [Tepidanaerobacter sp. Re1] gi|332696801|gb|AEE91258.1| metalloprotease ybeY [Tepidanaerobacter sp. Re1] Length = 162 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 12/152 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+I + E + KAV+ IS + +E+S+ D I+ LN +YR +D+PT+V Sbjct: 13 DKIDVTQKLEELINKAVNTAISVEKVSGD--LEVSIALVDDEYIQKLNRQYRSLDEPTDV 70 Query: 84 LSFP---TAF---ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 LSF T F S + +LGD+V++ E + +A G FE + L++HG LHL Sbjct: 71 LSFAMRETVFEEGGSFEFQEEELLGDVVISLERAKEQAVEYGHSFEREVGFLVVHGILHL 130 Query: 138 LGYDHVDDKDACVMEGLERSILEDL----GIN 165 LGYDH ++ VM E IL+ + GIN Sbjct: 131 LGYDHEVGEEKVVMRQREEEILKAIDLTRGIN 162 >gi|315303203|ref|ZP_07873860.1| putative metalloprotease [Listeria ivanovii FSL F6-596] gi|313628430|gb|EFR96906.1| putative metalloprotease [Listeria ivanovii FSL F6-596] Length = 161 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 12/139 (8%) Query: 38 KAVSNLIS--KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA------ 89 K V N++ Y + ELSL FT + I +N +YR D+ T+V+SF Sbjct: 21 KLVENILQFXXDYLKMDQGTELSLTFTTNEGIREINRDYRNKDQATDVISFALEELGEGE 80 Query: 90 ----FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 +A D + MLGDI+++ E E +A G L L +HG LHLLGYDH++ Sbjct: 81 TEIDWADFDLETPKMLGDIIISTEKAEEQAKEYGHTKARELGFLAVHGLLHLLGYDHMEP 140 Query: 146 KDACVMEGLERSILEDLGI 164 + +M GL++ +L+ G+ Sbjct: 141 DEEKIMFGLQKEVLDAYGL 159 >gi|313608753|gb|EFR84572.1| putative metalloprotease [Listeria monocytogenes FSL F2-208] Length = 161 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGCS 97 Y E ELSL FT + I +N EYR D+ T+V+SF + D + Sbjct: 33 YLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLET 92 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 MLGDI+++ E E +A G L L +HG LHLLGYDH++ + VM GL++ Sbjct: 93 PRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKE 152 Query: 158 ILEDLGIN 165 +L+ G+ Sbjct: 153 VLDAYGLE 160 >gi|329572232|gb|EGG53892.1| translation metalloprotein YbeY [Enterococcus faecalis TX1467] Length = 159 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Query: 38 KAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K + NL+ + G+ E+S+ FTD+ I+ +N +YRG D PT+V+SF D Sbjct: 18 KEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKDMPTDVISFALEDEGEDE 77 Query: 96 CSSLM-----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + LGD++++ E +A G E + L +HGF HL GYDH++ Sbjct: 78 LPIIFDDEELAELPRNLGDLIISTERAAEQAFEYGHTLEREMGFLAVHGFFHLNGYDHME 137 Query: 145 DKDACVMEGLERSILEDLGIN 165 +D M GL++ IL+ G+ Sbjct: 138 PEDEKAMFGLQKEILDAYGLK 158 >gi|225018653|ref|ZP_03707845.1| hypothetical protein CLOSTMETH_02603 [Clostridium methylpentosum DSM 5476] gi|224948561|gb|EEG29770.1| hypothetical protein CLOSTMETH_02603 [Clostridium methylpentosum DSM 5476] Length = 168 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 5/115 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----FASSDGCSSLMLGDIVLAYEI 110 E+S+ F D+ I+ LN EYR D PT+VLSFP F ++ + +LGDIVL+ E Sbjct: 42 AEVSVSFVDNADIQKLNSEYRQKDAPTDVLSFPLGENGEFDLNEETGAAVLGDIVLSMEK 101 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGI 164 +A + G + + +L +H HLLGYDH +A M E ++L LG+ Sbjct: 102 AYEQAEIYGHSLQREVAYLTVHSMFHLLGYDHEQGGLEAVRMREKEEAVLTSLGL 156 >gi|307266422|ref|ZP_07547958.1| protein of unknown function UPF0054 [Thermoanaerobacter wiegelii Rt8.B1] gi|306918530|gb|EFN48768.1| protein of unknown function UPF0054 [Thermoanaerobacter wiegelii Rt8.B1] Length = 159 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGCSSLM---------LGDI 104 VE+S+ F D+ I LN YRGIDKPT+VLSFP A F + + +GDI Sbjct: 38 VEVSVSFVDNEEIRKLNKYYRGIDKPTDVLSFPLAEFEDTYAEVEEIEEDSEEVQPIGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 V++ E ++ G FE + +L H LHLLGYDH +++ +M E ++ L I Sbjct: 98 VISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDHETEEERKIMREKEEEVMARLNI 157 >gi|262370521|ref|ZP_06063846.1| metal-dependent hydrolase [Acinetobacter johnsonii SH046] gi|262314321|gb|EEY95363.1| metal-dependent hydrolase [Acinetobacter johnsonii SH046] Length = 159 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 14/145 (9%) Query: 38 KAVSNLISKGYFVK-----------ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +A ++ +GY K ++ E+ + D LN EYRG DK TNVLSF Sbjct: 12 QAPELVLKRGYLKKVVETVLRHIGTQSNCEIGIACVDHDESHKLNLEYRGKDKSTNVLSF 71 Query: 87 PTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-V 143 P+ + S +GD+V+ ++ +EA K H H+++HG LHL+GYDH Sbjct: 72 PSDLPDEMAQILDSFPIGDLVICIPVVLLEAKEQNKAPLTHFTHMLVHGTLHLMGYDHET 131 Query: 144 DDKDACVMEGLERSILEDLGINDPY 168 + DA MEG+E IL LG +PY Sbjct: 132 SEADAEEMEGIEIEILAKLGFENPY 156 >gi|309810260|ref|ZP_07704105.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 2503V10-D] gi|312871748|ref|ZP_07731836.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 3008A-a] gi|325912641|ref|ZP_08175024.1| translation metalloprotein YbeY [Lactobacillus iners UPII 60-B] gi|308169532|gb|EFO71580.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 2503V10-D] gi|311092690|gb|EFQ51046.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 3008A-a] gi|325478062|gb|EGC81191.1| translation metalloprotein YbeY [Lactobacillus iners UPII 60-B] Length = 175 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-- 100 L +K K N E+S+ F D +++ +N YRG D+PT+V+SF A DG + + Sbjct: 31 LSAKKNIKKTNRQEMSINFVDINKMHEINKNYRGKDRPTDVISF----AIEDGIDNDLFA 86 Query: 101 -----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 +GD+ + E++E A F + ++HG+LHL GYDH+ D +A Sbjct: 87 QFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFGYTLVHGYLHLNGYDHIKDDEAE 146 Query: 150 VMEGLERSILEDLGI 164 VM G++ +LE+ G+ Sbjct: 147 VMFGIQSKVLEEYGL 161 >gi|217964389|ref|YP_002350067.1| hypothetical protein LMHCC_1105 [Listeria monocytogenes HCC23] gi|290894226|ref|ZP_06557195.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|254799939|sp|B8DE46|RRMF_LISMH RecName: Full=Probable rRNA maturation factor gi|217333659|gb|ACK39453.1| conserved hypothetical protein [Listeria monocytogenes HCC23] gi|290556223|gb|EFD89768.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307571046|emb|CAR84225.1| metal-dependent hydrolase family protein [Listeria monocytogenes L99] Length = 161 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGCS 97 Y E ELSL FT + I +N EYR D+ T+V+SF + D + Sbjct: 33 YLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLET 92 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 MLGDI+++ E E +A G L L +HG LHLLGYDH++ + VM GL++ Sbjct: 93 PRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKE 152 Query: 158 ILEDLGIN 165 +L+ G+ Sbjct: 153 VLDAYGLE 160 >gi|260892062|ref|YP_003238159.1| protein of unknown function UPF0054 [Ammonifex degensii KC4] gi|260864203|gb|ACX51309.1| protein of unknown function UPF0054 [Ammonifex degensii KC4] Length = 149 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+ + D I LN YRG D PTNVL+FP + L+LGD+V++ E E Sbjct: 39 VEVGVTLLDDTGIRELNRRYRGKDAPTNVLAFPMG---EEEPPVLLLGDVVISVETARSE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A GK E L HL++HG LHLLGYDH D + +M E ++L Sbjct: 96 AEEEGKGIEEKLAHLVVHGVLHLLGYDHETDAEEALMREKEEAVL 140 >gi|309379621|emb|CBX21792.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 171 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 11/146 (7%) Query: 37 AKAVSNLISKGYFVKE---------NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 A + +NL SK F + ++ L+ D N +YRG D TNVLSF Sbjct: 24 ASSAANLPSKHDFYRWAWSALKSGYRRADIGLILLDEEAARAYNRDYRGKDYATNVLSFA 83 Query: 88 TAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D Sbjct: 84 LNEGEILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIED 143 Query: 146 KDACVMEGLERSILEDLGINDPYEVD 171 +A +ME E ++ G +PY D Sbjct: 144 DEAEIMEAEEIRLMRAAGYPNPYRED 169 >gi|256847124|ref|ZP_05552570.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715788|gb|EEU30763.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 157 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 22/150 (14%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 H + L E + A A L +KEN E+SL F + I+ LN +YRG+D+ T+V+SF Sbjct: 16 HQKQLAEKLLAFAAHQL-----GLKEND-EMSLTFVRNPEIKALNAKYRGVDRATDVISF 69 Query: 87 PTAFASSDGCSSLM------------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 A DG ++ LGD+ ++ + ++ +A LG + L L++HGF Sbjct: 70 ----AMGDGDEEIVMDDAMAAELPHDLGDLFISVDKVKEQALFLGHSADRELGFLVVHGF 125 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHL GYDH D M L+ IL+D G+ Sbjct: 126 LHLNGYDHEQPDDEKKMFSLQEKILDDYGL 155 >gi|32491196|ref|NP_871450.1| hypothetical protein WGLp447 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173416|sp|Q8D2A7|RRMF_WIGBR RecName: Full=Probable rRNA maturation factor gi|25166403|dbj|BAC24593.1| ybeY [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 152 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 PTN+L+FP ++D S LGD+V+ EI+E EA K E+H H+IIHG LHLLG Sbjct: 64 PTNILAFPCIMPNNDQIS--FLGDLVVCSEIVEKEAKNQNKSVESHWAHIIIHGTLHLLG 121 Query: 140 YDHVDDKDAC-VMEGLERSILEDLGINDPY 168 YDH ++ + ME LE L G ++PY Sbjct: 122 YDHSNNSNKIEEMEILEIKFLNLFGYHNPY 151 >gi|312875653|ref|ZP_07735654.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2053A-b] gi|311088907|gb|EFQ47350.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2053A-b] Length = 175 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-- 100 L +K K N E+S+ F + ++I +N YRG D+PT+V+SF A DG + + Sbjct: 31 LSAKKNIKKTNRQEMSINFVNINKIHEINKNYRGKDRPTDVISF----AIEDGTDNDLFA 86 Query: 101 -----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 +GD+ + E++E A F + ++HG+LHL GYDH+ D +A Sbjct: 87 QFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFGYTLVHGYLHLNGYDHIKDDEAE 146 Query: 150 VMEGLERSILEDLGI 164 VM G++ +LE+ G+ Sbjct: 147 VMFGIQSKVLEEYGL 161 >gi|314936309|ref|ZP_07843656.1| putative metalloprotease [Staphylococcus hominis subsp. hominis C80] gi|313654928|gb|EFS18673.1| putative metalloprotease [Staphylococcus hominis subsp. hominis C80] Length = 153 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 51 KENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDI 104 KENI ELS+ F D I+ +N YR DK T+V+SF D +LGDI Sbjct: 31 KENIHEDAELSVTFVDKDEIQEINKNYRDKDKVTDVISFALEEDEPDIIGLDIPRVLGDI 90 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ ++ + +A FE L L +HGFLHLLGYDH++++D M G ++ IL G+ Sbjct: 91 IICTDVAKEQAESYNHSFERELGFLALHGFLHLLGYDHMNEEDEKEMFGRQKEILNAYGL 150 >gi|257090602|ref|ZP_05584963.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|312905134|ref|ZP_07764255.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0635] gi|256999414|gb|EEU85934.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|310631524|gb|EFQ14807.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0635] gi|315146687|gb|EFT90703.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX4244] gi|315579038|gb|EFU91229.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0630] gi|323481401|gb|ADX80840.1| conserved hypothetical protein [Enterococcus faecalis 62] Length = 159 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 13/141 (9%) Query: 38 KAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--------- 86 K + NL+ + G+ E+S+ FTD+ I+ +N +YRG D PT+V+SF Sbjct: 18 KEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQVINRDYRGKDMPTDVISFALEDEGENE 77 Query: 87 -PTAFASSDGCS-SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 P F + LGD++++ E +A G E + L +HGFLHL GYDH++ Sbjct: 78 LPIIFDDEELAELPRNLGDLIISTERAAEQAVEYGHTLEREMGFLAVHGFLHLNGYDHME 137 Query: 145 DKDACVMEGLERSILEDLGIN 165 +D M GL++ IL+ G+ Sbjct: 138 PEDEKEMFGLQKEILDAYGLK 158 >gi|34499607|ref|NP_903822.1| hypothetical protein CV_4152 [Chromobacterium violaceum ATCC 12472] gi|46577368|sp|Q7NQI5|RRMF_CHRVO RecName: Full=Probable rRNA maturation factor gi|34105458|gb|AAQ61813.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 168 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEI 113 ++S+V D+ LN +YRG D TNVLSF A + L L GD+VL ++E Sbjct: 51 AQISIVIVDAAEGRQLNNDYRGKDYATNVLSF--ALNEGEPVEGLPLFGDLVLCAPVVEQ 108 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K H HL++HG LHL G+DH +D +A ME LE I++ LG DPY Sbjct: 109 EAAEQNKALMAHYAHLLVHGMLHLQGFDHEEDAEAEAMEVLETVIVKQLGYPDPY 163 >gi|323141990|ref|ZP_08076841.1| translation metalloprotein YbeY [Phascolarctobacterium sp. YIT 12067] gi|322413522|gb|EFY04390.1| translation metalloprotein YbeY [Phascolarctobacterium sp. YIT 12067] Length = 168 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--------GCSSLMLGDIVLA 107 E+ + D I LN EYRG+DKPT+VLSF D G + GDI+++ Sbjct: 40 EVDVTIVDDEEIHALNREYRGMDKPTDVLSFALDEDCEDEDEPELIGGPEEHLFGDIIIS 99 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 E +A G E + +L +HG HLLGYDH+ ++D M E L + +++ Sbjct: 100 AETALRQAEEYGHGLEREMTYLAVHGMFHLLGYDHMTEEDKAEMRAKEEEALRAINLSEE 159 Query: 168 Y 168 Y Sbjct: 160 Y 160 >gi|313668982|ref|YP_004049266.1| hypothetical protein NLA_17020 [Neisseria lactamica ST-640] gi|313006444|emb|CBN87907.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 209 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 11/146 (7%) Query: 37 AKAVSNLISKGYFVK---------ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 A + +NL SK F + ++ L+ D N +YRG D TNVLSF Sbjct: 62 ASSAANLPSKHDFYRWAWSALKSGYRRADIGLILLDEEAARAYNRDYRGKDYATNVLSFA 121 Query: 88 TAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D Sbjct: 122 LNEGEILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIED 181 Query: 146 KDACVMEGLERSILEDLGINDPYEVD 171 +A +ME E ++ G +PY D Sbjct: 182 DEAEIMEAEEIRLMRAAGYPNPYRED 207 >gi|228476121|ref|ZP_04060829.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|228269944|gb|EEK11424.1| conserved hypothetical protein [Staphylococcus hominis SK119] Length = 153 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 66/120 (55%), Gaps = 6/120 (5%) Query: 51 KENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDI 104 KENI ELS+ F D I+ +N YR DK T+V+SF D +LGDI Sbjct: 31 KENIHEDAELSVTFVDKDEIQEINKNYRDKDKVTDVISFALEEDEPDIIGLDIPRVLGDI 90 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ ++ + +A FE L L +HGFLHLLGYDH++++D M G ++ IL G+ Sbjct: 91 IICTDVAKEQAESYNHSFERELGFLALHGFLHLLGYDHMNEEDEKEMFGRQKEILNAYGL 150 >gi|294789474|ref|ZP_06754710.1| putative metalloprotease [Simonsiella muelleri ATCC 29453] gi|294482554|gb|EFG30245.1| putative metalloprotease [Simonsiella muelleri ATCC 29453] Length = 174 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAY 108 E+SLV D N +YRG D TNVLSF A ++G ++ GD+++ Sbjct: 58 AEISLVLLDEAAARQYNHDYRGKDYATNVLSF----AHNEGEFLFVEQDDVLRGDLIICP 113 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++ EA GK +H HL+IHG LHL+G+DH++D +A ME LE +L L I +PY Sbjct: 114 RVVAKEATEQGKALHDHYAHLVIHGTLHLIGFDHMEDDEAEEMENLETELLAQLNIVNPY 173 Query: 169 E 169 E Sbjct: 174 E 174 >gi|116514236|ref|YP_813142.1| metal-dependent hydrolase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|313123896|ref|YP_004034155.1| metalloprotease [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|122275032|sp|Q04A18|RRMF_LACDB RecName: Full=Probable rRNA maturation factor gi|116093551|gb|ABJ58704.1| Predicted metal-dependent hydrolase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|312280459|gb|ADQ61178.1| Putative metalloprotease [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 174 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 9/131 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---------AFASS 93 L++K K+N E+S+ F D R + +N +YR D+PT+V+SF A + Sbjct: 31 LMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRDKDRPTDVISFAIEDGDDGLDLAMFTQ 90 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 D + +GD+ + +IE + G F+ + I+HG+LHL YDH++ +A M G Sbjct: 91 DPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFGYTIVHGYLHLNCYDHIEPDEAKEMFG 150 Query: 154 LERSILEDLGI 164 ++ +LE+ G+ Sbjct: 151 IQGKVLEEYGL 161 >gi|16803505|ref|NP_464990.1| putative metalloprotease [Listeria monocytogenes EGD-e] gi|47095416|ref|ZP_00233026.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 1/2a F6854] gi|224500515|ref|ZP_03668864.1| putative metalloprotease [Listeria monocytogenes Finland 1988] gi|224501595|ref|ZP_03669902.1| putative metalloprotease [Listeria monocytogenes FSL R2-561] gi|254827753|ref|ZP_05232440.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829776|ref|ZP_05234431.1| putative metalloprotease [Listeria monocytogenes 10403S] gi|254898369|ref|ZP_05258293.1| putative metalloprotease [Listeria monocytogenes J0161] gi|254912139|ref|ZP_05262151.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936467|ref|ZP_05268164.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284801852|ref|YP_003413717.1| putative metalloprotease [Listeria monocytogenes 08-5578] gi|284994994|ref|YP_003416762.1| putative metalloprotease [Listeria monocytogenes 08-5923] gi|26006921|sp|Q8Y747|RRMF_LISMO RecName: Full=Probable rRNA maturation factor gi|16410894|emb|CAC99543.1| lmo1465 [Listeria monocytogenes EGD-e] gi|47016237|gb|EAL07160.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 1/2a F6854] gi|258600132|gb|EEW13457.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609059|gb|EEW21667.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057414|gb|ADB68355.1| putative metalloprotease [Listeria monocytogenes 08-5578] gi|284060461|gb|ADB71400.1| putative metalloprotease [Listeria monocytogenes 08-5923] gi|293590110|gb|EFF98444.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 161 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 10/127 (7%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGCS 97 Y E ELSL FT + I +N EYR D+ T+V+SF + D + Sbjct: 33 YLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLET 92 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 MLGDI+++ E E +A G L L +HG LHLLGYDH++ + VM GL++ Sbjct: 93 PRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKE 152 Query: 158 ILEDLGI 164 +L+ G+ Sbjct: 153 VLDAYGL 159 >gi|325686033|gb|EGD28091.1| metalloprotease [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 174 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 9/131 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---------AFASS 93 L++K K+N E+S+ F D R + +N +YR D+PT+V+SF A + Sbjct: 31 LMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRDKDRPTDVISFAIEDGDDGLDLAMFTQ 90 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 D + +GD+ + +IE + G F+ + I+HG+LHL YDH++ +A M G Sbjct: 91 DPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFGYTIVHGYLHLNCYDHIEPDEAKEMFG 150 Query: 154 LERSILEDLGI 164 ++ +LE+ G+ Sbjct: 151 IQGKVLEEYGL 161 >gi|153853176|ref|ZP_01994585.1| hypothetical protein DORLON_00570 [Dorea longicatena DSM 13814] gi|149753962|gb|EDM63893.1| hypothetical protein DORLON_00570 [Dorea longicatena DSM 13814] Length = 164 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 18/157 (11%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 GD + L CE + + V + Y E++L+ T++ +I +N E+RGID+ T+ Sbjct: 9 GD-VKLPLECEALAKRVVEEALD--YVGCPYEAEVNLLLTENAQIHEMNKEFRGIDRATD 65 Query: 83 VLSFPTAFASSDGC---------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 VLSFP G L LGDIV++ E + +A G Sbjct: 66 VLSFPMIDYPEPGTFDFLEEQEDCFDPESGELTLGDIVISKEKVLAQAEEYGHSPMREYA 125 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LI H LHL GYDH++D++ VME +R I+E L I Sbjct: 126 FLIAHSVLHLTGYDHMEDEERQVMEQKQREIMERLDI 162 >gi|89899547|ref|YP_522018.1| hypothetical protein Rfer_0737 [Rhodoferax ferrireducens T118] gi|122479948|sp|Q220R6|RRMF_RHOFD RecName: Full=Probable rRNA maturation factor gi|89344284|gb|ABD68487.1| protein of unknown function UPF0054 [Rhodoferax ferrireducens T118] Length = 148 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 6/114 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D+ + LN +YR D TNVL+F ++ D+VL ++ E Sbjct: 41 AEITVRIVDTEEGQALNRDYRHKDYATNVLTFDYT------QEPVVTADLVLCAPVVAQE 94 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A GK + H HL++HG LH G+DH ++DA VME E I+ LG +PY Sbjct: 95 AKEQGKTLQEHYAHLLVHGALHAQGWDHEAEEDAQVMELRESEIMARLGFENPY 148 >gi|325681532|ref|ZP_08161057.1| translation metalloprotein YbeY [Ruminococcus albus 8] gi|324106799|gb|EGC01090.1| translation metalloprotein YbeY [Ruminococcus albus 8] Length = 170 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 11/121 (9%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIV 105 N E+S+ F + +I LN E+R ID+ T+VLSFP DG + +LGDIV Sbjct: 40 NDAEVSVSFVNDSQIHELNKEHRNIDRSTDVLSFPLG---EDGVYDINYETGASLLGDIV 96 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGI 164 ++ E +A V G E + L +H LHLLGYDH + +M E +ILE LGI Sbjct: 97 ISLETATKQAQVYGHSLEREVGFLTVHSMLHLLGYDHEESSLQERIMREKEEAILEQLGI 156 Query: 165 N 165 + Sbjct: 157 S 157 >gi|239827762|ref|YP_002950386.1| metalloprotease [Geobacillus sp. WCH70] gi|259646848|sp|C5D4S8|RRMF_GEOSW RecName: Full=Probable rRNA maturation factor gi|239808055|gb|ACS25120.1| protein of unknown function UPF0054 [Geobacillus sp. WCH70] Length = 156 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAY 108 E+ + F D+ RI +N +YRG D+PT+V+SF D +LGDI+++ Sbjct: 39 AEVGISFVDNERIRIINRDYRGKDQPTDVISFALEEKGEGEVEIVDADIPPLLGDIIISI 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G F L L +HGFLHLLGYDH +++ +M ++ ILE G+ Sbjct: 99 PKAKEQAKEYGHSFMRELGFLAVHGFLHLLGYDHKTEEEEKIMFSKQKDILERYGLT 155 >gi|240122830|ref|ZP_04735786.1| hypothetical protein NgonP_02615 [Neisseria gonorrhoeae PID332] gi|268681445|ref|ZP_06148307.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268621729|gb|EEZ54129.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] Length = 171 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++ L+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGYLR----ADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 88 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|289550659|ref|YP_003471563.1| predicted metal-dependent hydrolase [Staphylococcus lugdunensis HKU09-01] gi|315658154|ref|ZP_07911026.1| putative metal-dependent hydrolase [Staphylococcus lugdunensis M23590] gi|289180191|gb|ADC87436.1| predicted metal-dependent hydrolase [Staphylococcus lugdunensis HKU09-01] gi|315496483|gb|EFU84806.1| putative metal-dependent hydrolase [Staphylococcus lugdunensis M23590] Length = 153 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 3/114 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEII 111 ELS+ F D I+ +N YR DK T+V+SF + +LGDI++ ++ Sbjct: 38 AELSVTFVDKEEIQQINKIYRDKDKVTDVISFALEEDEPEITGLEIPRVLGDIIICTDVA 97 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G FE L L +HGFLHLLGYDH++++D M G + +IL G+ Sbjct: 98 QEQATTYGHSFERELGFLALHGFLHLLGYDHMNEEDEKKMFGRQETILTAYGLT 151 >gi|291542198|emb|CBL15308.1| conserved hypothetical protein TIGR00043 [Ruminococcus bromii L2-63] Length = 171 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 4/117 (3%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----FASSDGCSSLMLGDIVLA 107 E E+S+ FTD+ I+ LN +YR D T+VLSFP + ++ + +LGD+V++ Sbjct: 42 EGSAEISVTFTDNEGIKALNKQYRDKDIETDVLSFPMGENGVYDTNPETGAQILGDVVIS 101 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E +A + G + + +L H LHLLGYDH++ + M E ++E LG+ Sbjct: 102 MEKARDQAELFGHSLQREVGYLTAHSVLHLLGYDHMEKLERVRMREKEELVMEQLGL 158 >gi|312869122|ref|ZP_07729296.1| translation metalloprotein YbeY [Lactobacillus oris PB013-T2-3] gi|311095368|gb|EFQ53638.1| translation metalloprotein YbeY [Lactobacillus oris PB013-T2-3] Length = 159 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 13/145 (8%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 ++ + V ++ +K++ E+S+ + I LN +YRG+D+ T+VLSF A Sbjct: 16 AQLALVRDVLQFAARQLSLKDS-TEMSVTMMTNPAIRKLNQQYRGVDRATDVLSF-AAEE 73 Query: 92 SSDGCSSLM-----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 S D +M LGD+ ++ + +E +A LG + L L++HGFLHL GY Sbjct: 74 SGDETPIIMDPELAAELPENLGDLFVSIDKVEEQAKFLGHSVDRELGFLVVHGFLHLNGY 133 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH D M L+R IL++ G+ Sbjct: 134 DHEKQADEQRMFDLQREILDEYGLQ 158 >gi|313888895|ref|ZP_07822555.1| translation metalloprotein YbeY [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845068|gb|EFR32469.1| translation metalloprotein YbeY [Peptoniphilus harei ACS-146-V-Sch2b] Length = 148 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 6/112 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGCSSLMLGDIVLAYEIIE 112 VE+S+ F I+ LN +YRG+D+ T+VLSFP F +LGD+++ + Sbjct: 39 VEVSVSFVGDEEIKNLNRDYRGVDRSTDVLSFPMDDEFI----IDKRILGDVIINTRRVM 94 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A LG E L +L +H LHLLGYDH++D+D M E+ +++L I Sbjct: 95 EQAEELGHSHERELSYLTVHSILHLLGYDHMEDEDKREMREREKLSMKELEI 146 >gi|241759364|ref|ZP_04757470.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|241320500|gb|EER56797.1| conserved hypothetical protein [Neisseria flavescens SK114] Length = 171 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 76/152 (50%), Gaps = 23/152 (15%) Query: 37 AKAVSNLISKGYFVKENIVEL---------SLVFTDSHRIETLNFEYRGIDKPTNVLSF- 86 A + +NL S+ F + L SL+ D N +YRG D TNVLSF Sbjct: 24 ASSAANLPSERDFYRWTWSALKNEYRRAGISLILLDEEEARDYNRDYRGKDYATNVLSFA 83 Query: 87 -------PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 P F SDG + GD+V+ +++ EA GK E H HL IHG LHL+G Sbjct: 84 LNEGEILPDQF--SDG----LYGDLVICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMG 137 Query: 140 YDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 YDH++D +A +ME E ++ G +PY+ D Sbjct: 138 YDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 169 >gi|227510286|ref|ZP_03940335.1| metal-dependent hydrolase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189938|gb|EEI70005.1| metal-dependent hydrolase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 161 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 12/122 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML------------G 102 E+S+ ++ I +N EYRG+D+ T+V+SF + D +++ G Sbjct: 38 TEMSVTLVNNDEIHKINREYRGVDRATDVISFAIEDEAEDDDFPIVMDEDMQESIPENIG 97 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI ++ + + +A+ LG F+ L L++HGFLHL GYDH++ DA +M L++ IL Sbjct: 98 DIFVSVDKVAEQADYLGHSFQRELGFLVVHGFLHLNGYDHMEKADADIMFPLQKEILNAY 157 Query: 163 GI 164 G+ Sbjct: 158 GL 159 >gi|260101322|ref|ZP_05751559.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260084907|gb|EEW69027.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 174 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 L++K K+N +E+S+ F D R +N +YR D+PT+V+SF A DG ++ L Sbjct: 31 LLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRDKDRPTDVISF----AIQDGEDAIDLS 86 Query: 102 ------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 GD+ + +I+ + G F+ + ++HGFLHL GYDH+ +A Sbjct: 87 AFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFGYTVVHGFLHLNGYDHIKPDEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LE+ G+ Sbjct: 147 EMFGIQGKVLEECGL 161 >gi|317056498|ref|YP_004104965.1| hypothetical protein Rumal_1833 [Ruminococcus albus 7] gi|315448767|gb|ADU22331.1| protein of unknown function UPF0054 [Ruminococcus albus 7] Length = 170 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 5/116 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----FASSDGCSSLMLGDIVLAYEI 110 E+S+ F + +I LN E+R ID+PT+VLSFP + + + +LGDIV++ E Sbjct: 42 AEVSVSFVNDKQIHELNKEHRDIDRPTDVLSFPLGENGEYDVNYESGACLLGDIVISLET 101 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN 165 +A V G E + L +H LHLLGYDH + +M E +IL LGI+ Sbjct: 102 ATRQAQVYGHSLEREVGFLTVHSMLHLLGYDHEESSLQERIMREKEEAILAQLGIS 157 >gi|242373875|ref|ZP_04819449.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W1] gi|242348429|gb|EES40031.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W1] Length = 155 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 13/136 (9%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + FAK N+ E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 25 LTFAKKQENI--------ESDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFALEEDEP 76 Query: 94 D-GCSSL----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 D + L +LGDI++ ++ + +A G FE L L +HGFLHLLGYDH+ + D Sbjct: 77 DIDMNDLEIPRVLGDIIICTDVAQEQAESYGHSFERELGFLALHGFLHLLGYDHMTEDDE 136 Query: 149 CVMEGLERSILEDLGI 164 M G + +IL G+ Sbjct: 137 KEMFGRQDAILNSYGL 152 >gi|225027038|ref|ZP_03716230.1| hypothetical protein EUBHAL_01294 [Eubacterium hallii DSM 3353] gi|224955502|gb|EEG36711.1| hypothetical protein EUBHAL_01294 [Eubacterium hallii DSM 3353] Length = 169 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 16/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 ++ ++ TD+ I +N E+R ID+PT+VLSFP A G Sbjct: 38 AQVYVLLTDNEEIHEINKEHRQIDRPTDVLSFPMADYPVPGDFSDIEERDPDAFHPETGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDI+++ + ++ +A G L L+ H LHL+GYDH+ D++ VME + I Sbjct: 98 LILGDIIISMDKVKEQAKAYGHSNTRELAFLVAHSMLHLMGYDHMVDEERKVMEAKQEEI 157 Query: 159 LEDLG 163 L++ G Sbjct: 158 LKNCG 162 >gi|300361844|ref|ZP_07058021.1| metal-dependent hydrolase [Lactobacillus gasseri JV-V03] gi|300354463|gb|EFJ70334.1| metal-dependent hydrolase [Lactobacillus gasseri JV-V03] Length = 175 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 11/154 (7%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + DE++ + + ++NL+ +K KEN E+S+ F S +I +N +YRG D+ Sbjct: 8 FNDEVNFLNNDDKDWIPWITNLLLSAKKEINKENAQEMSINFVSSEKIHEINKKYRGKDR 67 Query: 80 PTNVLSFPTAFASSDGCSSLM---------LGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 PT+V+SF + S +GD+ L E+I+ + F + + Sbjct: 68 PTDVISFAIEDGLDEDFMSAFNDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFGYTL 127 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +HG+LHL G+DH++D +A VM G++ +L + G+ Sbjct: 128 VHGYLHLNGFDHIEDDEAKVMFGIQGKVLREYGL 161 >gi|239817628|ref|YP_002946538.1| hypothetical protein Vapar_4667 [Variovorax paradoxus S110] gi|239804205|gb|ACS21272.1| protein of unknown function UPF0054 [Variovorax paradoxus S110] Length = 152 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D+ + LN E+RG D TNVL+F S +++ D+VL ++ E Sbjct: 42 AEITVRIVDAEEGQRLNREFRGKDYATNVLTFDYT------QSPMVMADLVLCAPVVASE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A K H HL++HG LH G+DH + DA ME E IL LGI +PY Sbjct: 96 AKEQRKTLAAHYAHLLVHGTLHAQGWDHETGEADAEAMEAREIEILAGLGIRNPY 150 >gi|297588409|ref|ZP_06947052.1| probable metal-dependent hydrolase [Finegoldia magna ATCC 53516] gi|297573782|gb|EFH92503.1| probable metal-dependent hydrolase [Finegoldia magna ATCC 53516] Length = 153 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 2/109 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+SL F I+ LN +YR D T+VLSFP + +LGDI++ + +A Sbjct: 40 EVSLSFVSEEEIKELNRDYRNKDSVTDVLSFP--LEDDFQIQTNLLGDIIICCKRAVEQA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +V+L++H HLLGYDH+D+ D +M E+S L+++GI Sbjct: 98 KEYNHSIKREIVYLVVHSMFHLLGYDHIDESDKIIMRNKEKSALKEIGI 146 >gi|268679311|ref|YP_003303742.1| hypothetical protein Sdel_0671 [Sulfurospirillum deleyianum DSM 6946] gi|268617342|gb|ACZ11707.1| protein of unknown function UPF0054 [Sulfurospirillum deleyianum DSM 6946] Length = 140 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 7/109 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ LVF +S + LN E+RG+DK T+VLSFP D LG IV+ YE + +A Sbjct: 28 EVELVFINSADMHALNLEHRGVDKTTDVLSFPI-----DDFPHAPLGSIVINYEYAKEKA 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LG E+ + L IHG LHLLGYDH + D M E++++E + Sbjct: 83 LALGHSHEDEITLLFIHGMLHLLGYDH--EVDQGEMREKEKALIEQYAL 129 >gi|296532214|ref|ZP_06894964.1| possible metal-dependent hydrolase [Roseomonas cervicalis ATCC 49957] gi|296267458|gb|EFH13333.1| possible metal-dependent hydrolase [Roseomonas cervicalis ATCC 49957] Length = 159 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 7/113 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++++ TD ++ LN E+R KPTNVLSFP G LGDI LA ++ EA Sbjct: 51 MTVLLTDDRSVKRLNGEHRNKVKPTNVLSFP-------GEGFGHLGDIALALGVVRREAR 103 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + HL HL+ HG LHL G+DH+ +A ME E I+ L + +P+ Sbjct: 104 AAKRRVAAHLAHLVAHGTLHLGGHDHIQAGEARRMERAEARIMRRLALPNPWR 156 >gi|291519462|emb|CBK74683.1| conserved hypothetical protein TIGR00043 [Butyrivibrio fibrisolvens 16/4] Length = 165 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 15/126 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---------------CSSL 99 E+S+ TD+ I+ +N E+R ID PT+VLSFP + G + Sbjct: 38 AEISITITDNDGIQAINKEFRNIDAPTDVLSFPMIDYPAPGKFDHIENDDDLFNPETGEV 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDIVL+ I +A G LI H LHL G+DH+ + DA VME +R IL Sbjct: 98 ILGDIVLSVPRILSQAEEYGHSVLREYAFLIAHSMLHLFGFDHMTESDASVMEQKQREIL 157 Query: 160 EDLGIN 165 + L I+ Sbjct: 158 DILNIS 163 >gi|168335125|ref|ZP_02693233.1| hypothetical protein Epulo_08803 [Epulopiscium sp. 'N.t. morphotype B'] Length = 153 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYE 109 N +E+SL D I T+N ++R ID+ T+VLSFP A S D ++LGDI++ + Sbjct: 37 NDIEISLSIVDKETIRTINRDFREIDRDTDVLSFPQFEAQSEFVDSADVVILGDIIICLD 96 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 I + +A + LI H HLLGYDH+ + D +M + +LE L I Sbjct: 97 IAKEQAVAYNHSLAREICFLIAHSCFHLLGYDHMTEDDEIIMFAKQDCVLETLKIT 152 >gi|329733127|gb|EGG69464.1| translation metalloprotein YbeY [Staphylococcus aureus subsp. aureus 21193] Length = 155 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 9/121 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FASSDGCSSLMLGDI 104 ++ ELS+ F D I+ +N YR DK T+V+SF F+ D +LGDI Sbjct: 35 QDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLD--IPRVLGDI 92 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ ++ + +AN G FE L L +HGFLHLLGYDH+ + D M G + +IL G+ Sbjct: 93 IICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGL 152 Query: 165 N 165 Sbjct: 153 T 153 >gi|104774146|ref|YP_619126.1| hypothetical protein Ldb1253 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122397141|sp|Q1G9W4|RRMF_LACDA RecName: Full=Probable rRNA maturation factor gi|103423227|emb|CAI98055.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125926|gb|ADY85256.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 174 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 L++K K+N E+S+ F D R + +N +YR D+PT+V+SF A DG L L Sbjct: 31 LMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRDKDRPTDVISF----AIEDGDDGLDLS 86 Query: 102 ------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 GD+ + +IE + G F+ + I+HG+LHL YDH++ +A Sbjct: 87 MFTQDPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFGYTIVHGYLHLNCYDHIEPDEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LE+ G+ Sbjct: 147 EMFGIQGKVLEEYGL 161 >gi|253681848|ref|ZP_04862645.1| conserved hypothetical protein YbeY [Clostridium botulinum D str. 1873] gi|253561560|gb|EES91012.1| conserved hypothetical protein YbeY [Clostridium botulinum D str. 1873] Length = 166 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/145 (37%), Positives = 72/145 (49%), Gaps = 18/145 (12%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------- 88 K + N K VK N E+S++F D++ I+ +N E R IDK T+VLSFP Sbjct: 21 VKEIINYTLKEEEVKVN-TEVSVIFIDNNTIKEINKETRDIDKVTDVLSFPMLDYPQGKV 79 Query: 89 --------AF-ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 F AS L+LGDIVL+ E E ++ F + +L +H LHLLG Sbjct: 80 YKDTYKDYEFDASYLDEGELVLGDIVLSLEKAEEQSTEFRHSFLREVCYLTVHSVLHLLG 139 Query: 140 YDHVDDKDACVMEGLERSILEDLGI 164 YDH++D D M E ILE I Sbjct: 140 YDHMEDDDKVRMRKREEEILERFSI 164 >gi|270308535|ref|YP_003330593.1| hypothetical protein DhcVS_1151 [Dehalococcoides sp. VS] gi|270154427|gb|ACZ62265.1| hypothetical protein DhcVS_1151 [Dehalococcoides sp. VS] Length = 160 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 12/137 (8%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF- 86 + L F K +++ K N EL +V T I+ LNF+YR +D+PT+VLSF Sbjct: 11 FKKLVSSQFLKKIASETLKAQAADPN-SELGIVITGQEEIKDLNFKYRELDEPTDVLSFY 69 Query: 87 -----PTAFASSDGCSS-----LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 P + D + + LG+++++Y EI+A+ G + L+IHG LH Sbjct: 70 MLEENPENLTAPDDFPTPPDENIHLGEVIISYPQAEIQASAAGHSVNYEIAFLLIHGVLH 129 Query: 137 LLGYDHVDDKDACVMEG 153 LLGYDH + VM+ Sbjct: 130 LLGYDHHEPVSEAVMKS 146 >gi|257869125|ref|ZP_05648778.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803289|gb|EEV32111.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 158 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----------PTAFASSDGCSSLMLGDI 104 E+S+ F D+ I+ +N +YR D+PT+V+SF P F LGDI Sbjct: 37 TEMSVTFMDNAAIQVINRDYRDKDQPTDVISFALEEETEEELPIIFDDEMPAMPRNLGDI 96 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E + +A+ G ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 97 MISVERAKEQASEYGHSYDRELGFLALHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGL 156 Query: 165 N 165 Sbjct: 157 K 157 >gi|227524437|ref|ZP_03954486.1| metal-dependent hydrolase [Lactobacillus hilgardii ATCC 8290] gi|227088396|gb|EEI23708.1| metal-dependent hydrolase [Lactobacillus hilgardii ATCC 8290] Length = 161 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 12/122 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML------------G 102 E+S+ +++ I +N EYRG+D+ T+V+SF + D +++ G Sbjct: 38 TEMSVTLVNNNEIHKINREYRGVDRATDVISFAIEDEAEDDDFPIVMDEDMQESIPENIG 97 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI ++ + + +A+ LG F+ L L++HGFLHL GYDH++ DA +M L+ IL Sbjct: 98 DIFVSVDKVAEQADYLGHSFQRELGFLVVHGFLHLNGYDHMEKADADIMFPLQEEILNAY 157 Query: 163 GI 164 G+ Sbjct: 158 GL 159 >gi|323466382|gb|ADX70069.1| Hypothetical cytosolic protein [Lactobacillus helveticus H10] Length = 174 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 L++K K+N +E+S+ F D R +N +YR D+PT+V+SF A DG ++ L Sbjct: 31 LLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRDKDRPTDVISF----AIEDGEDAIDLS 86 Query: 102 ------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 GD+ + +I+ + G F+ + ++HGFLHL GYDH+ +A Sbjct: 87 AFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFGYTVVHGFLHLNGYDHIKPDEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LE+ G+ Sbjct: 147 EMFGIQGKVLEECGL 161 >gi|156744199|ref|YP_001434328.1| hypothetical protein Rcas_4283 [Roseiflexus castenholzii DSM 13941] gi|189040181|sp|A7NRW4|RRMF_ROSCS RecName: Full=Probable rRNA maturation factor gi|156235527|gb|ABU60310.1| protein of unknown function UPF0054 [Roseiflexus castenholzii DSM 13941] Length = 159 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 18/122 (14%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-------SLMLGDIVLA 107 VE+S++ TD + LN YRG+D PT+VLSF A D S LGDI ++ Sbjct: 42 VEISILITDDADVHRLNQTYRGVDAPTDVLSF----AEDDDHSFVRPPDAPRYLGDIAIS 97 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH----VDDKDACVMEGLERSILEDLG 163 ++ + +A G E L L++HG LHLLGYDH VD+ D M E +IL LG Sbjct: 98 WDRVVAQAAEYGHSRERELAFLVVHGVLHLLGYDHERGPVDEAD---MRAREEAILGALG 154 Query: 164 IN 165 ++ Sbjct: 155 LS 156 >gi|46907693|ref|YP_014082.1| metalloprotease [Listeria monocytogenes serotype 4b str. F2365] gi|47093470|ref|ZP_00231233.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 4b H7858] gi|226224066|ref|YP_002758173.1| hypothetical protein Lm4b_01475 [Listeria monocytogenes Clip81459] gi|254824476|ref|ZP_05229477.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852090|ref|ZP_05241438.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254932650|ref|ZP_05266009.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|300765608|ref|ZP_07075587.1| hypothetical protein LMHG_12515 [Listeria monocytogenes FSL N1-017] gi|59799121|sp|Q71ZK5|RRMF_LISMF RecName: Full=Probable rRNA maturation factor gi|259646403|sp|C1KVB2|RRMF_LISMC RecName: Full=Probable rRNA maturation factor gi|46880962|gb|AAT04259.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes serotype 4b str. F2365] gi|47018146|gb|EAL08916.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 4b H7858] gi|225876528|emb|CAS05237.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605389|gb|EEW17997.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293584209|gb|EFF96241.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593714|gb|EFG01475.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300513709|gb|EFK40777.1| hypothetical protein LMHG_12515 [Listeria monocytogenes FSL N1-017] gi|328465508|gb|EGF36737.1| metal-binding heat shock protein [Listeria monocytogenes 1816] gi|328474977|gb|EGF45771.1| metal-binding heat shock protein [Listeria monocytogenes 220] gi|332311906|gb|EGJ25001.1| Putative rRNA maturation factor [Listeria monocytogenes str. Scott A] Length = 161 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 10/127 (7%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGCS 97 Y E ELSL FT + I +N EYR D+ T+V+SF + D + Sbjct: 33 YLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLET 92 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 MLGDI+++ E E +A G L L +HG LHLLGYDH++ + +M GL++ Sbjct: 93 PRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKE 152 Query: 158 ILEDLGI 164 +L+ G+ Sbjct: 153 VLDAYGL 159 >gi|161507652|ref|YP_001577606.1| hypothetical protein lhv_1302 [Lactobacillus helveticus DPC 4571] gi|172048292|sp|A8YVM8|RRMF_LACH4 RecName: Full=Probable rRNA maturation factor gi|160348641|gb|ABX27315.1| hypothetical protein lhv_1302 [Lactobacillus helveticus DPC 4571] Length = 174 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 L++K K+N +E+S+ F D R +N +YR D+PT+V+SF A DG ++ L Sbjct: 31 LLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRDKDRPTDVISF----AIEDGEDAIDLS 86 Query: 102 ------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 GD+ + +I+ + G F+ + ++HGFLHL GYDH+ +A Sbjct: 87 VFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFGYTVVHGFLHLNGYDHIKPDEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LE+ G+ Sbjct: 147 EMFGIQGKVLEECGL 161 >gi|255521280|ref|ZP_05388517.1| putative metalloprotease [Listeria monocytogenes FSL J1-175] Length = 130 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGCS 97 Y E ELSL FT + I +N EYR D+ T+V+SF + D + Sbjct: 2 YLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLET 61 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 MLGDI+++ E E +A G L L +HG LHLLGYDH++ + +M GL++ Sbjct: 62 PRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKE 121 Query: 158 ILEDLGIN 165 +L+ G+ Sbjct: 122 VLDAYGLE 129 >gi|56421026|ref|YP_148344.1| putative metalloprotease [Geobacillus kaustophilus HTA426] gi|261418491|ref|YP_003252173.1| metalloprotease [Geobacillus sp. Y412MC61] gi|297529343|ref|YP_003670618.1| hypothetical protein GC56T3_0999 [Geobacillus sp. C56-T3] gi|319767548|ref|YP_004133049.1| hypothetical protein GYMC52_2525 [Geobacillus sp. Y412MC52] gi|59799076|sp|Q5KX10|RRMF_GEOKA RecName: Full=Probable rRNA maturation factor gi|56380868|dbj|BAD76776.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374948|gb|ACX77691.1| protein of unknown function UPF0054 [Geobacillus sp. Y412MC61] gi|297252595|gb|ADI26041.1| protein of unknown function UPF0054 [Geobacillus sp. C56-T3] gi|317112414|gb|ADU94906.1| protein of unknown function UPF0054 [Geobacillus sp. Y412MC52] Length = 156 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAY 108 E+S+ F D+ RI +N +YRG D PT+VLSF + + +LGDIV++ Sbjct: 39 AEVSVTFVDNERIRAMNRDYRGKDAPTDVLSFALEEEGEEEVHIVGADMPPVLGDIVISI 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G F L L +HGFLHLLGYDH +++ VM + IL G+ Sbjct: 99 PKAKEQAAAYGHSFMRELGFLAVHGFLHLLGYDHGTEEEERVMFAKQEDILARFGLT 155 >gi|254991895|ref|ZP_05274085.1| putative metalloprotease [Listeria monocytogenes FSL J2-064] Length = 161 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 10/127 (7%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGCS 97 Y E ELSL FT + I +N EYR D+ T+V+SF + D + Sbjct: 33 YLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLET 92 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 MLGDI+++ E E +A G L L +HG LHLLGYDH++ + +M GL++ Sbjct: 93 PRMLGDIIISTEKAEEQATDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKE 152 Query: 158 ILEDLGI 164 +L+ G+ Sbjct: 153 VLDAYGL 159 >gi|187778471|ref|ZP_02994944.1| hypothetical protein CLOSPO_02065 [Clostridium sporogenes ATCC 15579] gi|187772096|gb|EDU35898.1| hypothetical protein CLOSPO_02065 [Clostridium sporogenes ATCC 15579] Length = 166 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 23/150 (15%) Query: 36 FAKAVSNLISKGYFVKENIV----ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--- 88 F + +I Y +KE V E+S+VF D++ I+ +N +YR IDK T+VLSFP Sbjct: 17 FENKIKEIID--YALKEERVNIDYEISVVFIDNNSIKEINKDYRNIDKVTDVLSFPMLDY 74 Query: 89 -------------AFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 F SD +L+LGDI L+ E E ++ F +L IH Sbjct: 75 EEGKVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFEHSFLRETCYLTIHSV 134 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHLLGYDH+ + + +M E IL++ + Sbjct: 135 LHLLGYDHIKEDEKAIMRQREEEILKNFNL 164 >gi|27904874|ref|NP_778000.1| hypothetical protein bbp393 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29428175|sp|P59478|RRMF_BUCBP RecName: Full=Probable rRNA maturation factor gi|27904272|gb|AAO27105.1| hypothetical protein YbeY [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 154 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I++LN+++R +K TN+LSF ++ + +GD+++ EI+ EA E+H Sbjct: 53 IKSLNYKFRQKNKATNILSF--SYINDKMIDKNYIGDLIICSEIVTEEAKKKNVTLESHW 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+ IHG LHLLGY+H + + ME LE I+ L +PY Sbjct: 111 AHITIHGILHLLGYNHDNLNNRIKMEYLETKIMASLNYKNPY 152 >gi|59800603|ref|YP_207315.1| hypothetical protein NGO0145 [Neisseria gonorrhoeae FA 1090] gi|268596185|ref|ZP_06130352.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|291044524|ref|ZP_06570233.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293397660|ref|ZP_06641866.1| hypothetical protein NGNG_00646 [Neisseria gonorrhoeae F62] gi|59717498|gb|AAW88903.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|268549973|gb|EEZ44992.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|291011418|gb|EFE03414.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611606|gb|EFF40675.1| hypothetical protein NGNG_00646 [Neisseria gonorrhoeae F62] Length = 211 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++ L+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 91 ADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSERLYGDLIICPQVVL 150 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH+ D +A +ME E ++ G +PY D Sbjct: 151 KEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAEIMEAEEIRLMRAAGYPNPYRED 209 >gi|194097776|ref|YP_002000817.1| Putative metalloprotease NGO0145 [Neisseria gonorrhoeae NCCP11945] gi|268594133|ref|ZP_06128300.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|193933066|gb|ACF28890.1| Putative metalloprotease NGO0145 [Neisseria gonorrhoeae NCCP11945] gi|268547522|gb|EEZ42940.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|317163557|gb|ADV07098.1| Putative metalloprotease [Neisseria gonorrhoeae TCDC-NG08107] Length = 211 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++ L+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 91 ADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSERLYGDLIICPQVVL 150 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH+ D +A +ME E ++ G +PY D Sbjct: 151 KEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAEIMEAEEIRLMRAAGYPNPYRED 209 >gi|154148178|ref|YP_001406320.1| putative metalloprotease [Campylobacter hominis ATCC BAA-381] gi|153804187|gb|ABS51194.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 138 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 8/134 (5%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 +CE F + ++++ F+ VEL VF +S ++ LN RGIDK T+VLSFP F Sbjct: 3 ICETEFPQILNDI---NKFLGSYNVEL--VFVNSDEMKELNLTERGIDKTTDVLSFP-LF 56 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + D +G +V+ ++ + +AN LG + + L +HGFLH+LG+DH + D Sbjct: 57 SKIDNYGDFPIGSVVINLDLAKRKANELGHNVNDEIALLFMHGFLHILGFDH--ETDNGE 114 Query: 151 MEGLERSILEDLGI 164 M ER I+E+ + Sbjct: 115 MREKEREIIENFKL 128 >gi|167946144|ref|ZP_02533218.1| hypothetical protein Epers_06212 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 100 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 69 TLNFEYRGIDKPTNVLSFP--TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 T +YRG D+PTNVLSFP T + +LGD+V+ ++ EA GK +H Sbjct: 13 TEXRDYRGKDRPTNVLSFPFETPPELPAEAAGNLLGDLVICAPVVAREAAAQGKSPISHW 72 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEG 153 +H+++HG LHL G DH +D +A +M G Sbjct: 73 IHMVVHGVLHLQGLDHQNDAEAGIMRG 99 >gi|289434747|ref|YP_003464619.1| hypothetical protein lse_1382 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170991|emb|CBH27533.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633222|gb|EFS00094.1| putative metalloprotease [Listeria seeligeri FSL N1-067] gi|313637811|gb|EFS03155.1| putative metalloprotease [Listeria seeligeri FSL S4-171] Length = 161 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGCSSLMLGDI 104 ELSL FT + I +N EYR D+ T+V+SF + D + MLGDI Sbjct: 40 TELSLTFTTNEGIREINREYRNKDQATDVISFALEELGEGETEIDWGEFDLETPKMLGDI 99 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E E +A G L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 100 IISTEKAEEQAKDYGHSKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGL 159 >gi|291612931|ref|YP_003523088.1| hypothetical protein Slit_0460 [Sideroxydans lithotrophicus ES-1] gi|291583043|gb|ADE10701.1| protein of unknown function UPF0054 [Sideroxydans lithotrophicus ES-1] Length = 152 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 12/141 (8%) Query: 34 VVFAKAVSNLISKGYFVK------ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 V +A L ++ F + E V++SL + TLN ++RG D TNVL+F Sbjct: 15 VQYASNAGKLPTRQQFRRWAKAALERDVQISLRLVNEAEGRTLNRDFRGKDYATNVLTF- 73 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 D L GD+V+ ++ EA GK+ H HL+IH LHL GYDH +D Sbjct: 74 ----VYDDTVPLS-GDVVICVPVVAREAKEQGKDLFAHYAHLVIHAVLHLQGYDHEKKRD 128 Query: 148 ACVMEGLERSILEDLGINDPY 168 A ME E +++ L PY Sbjct: 129 AEKMEARETALMLKLRYPAPY 149 >gi|269120554|ref|YP_003308731.1| hypothetical protein Sterm_1944 [Sebaldella termitidis ATCC 33386] gi|268614432|gb|ACZ08800.1| protein of unknown function UPF0054 [Sebaldella termitidis ATCC 33386] Length = 152 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEA 115 +S + T + I+ +N EYRG D PT+V+SF A+ ++ +LGDI+++ E + +A Sbjct: 43 VSFLITTNDVIQNINSEYRGKDTPTDVISF--AYNETENIGPFDILGDIIISAEKVTEQA 100 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 G E +++ HG LHLLGYDH+DD+D VM Sbjct: 101 KEYGHSTEREFYYVLCHGMLHLLGYDHIDDEDKKVM 136 >gi|296314907|ref|ZP_06864848.1| putative metalloprotease [Neisseria polysaccharea ATCC 43768] gi|296838092|gb|EFH22030.1| putative metalloprotease [Neisseria polysaccharea ATCC 43768] Length = 171 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 14/125 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--------PTAFASSDGCSSLMLGDIVL 106 ++SL+ D N +YRG D TNVLSF P F SDG + GD+V+ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQF--SDG----LYGDLVI 104 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 +++ EA K E H HL IHG LHL+GYDH++D +A +ME E ++ +G + Sbjct: 105 CPQVVLKEAAEQDKTPEQHFAHLTIHGTLHLMGYDHIEDNEAEIMEAEEIRLMLAVGFPN 164 Query: 167 PYEVD 171 PY+ D Sbjct: 165 PYQED 169 >gi|206891031|ref|YP_002248706.1| hypothetical protein THEYE_A0868 [Thermodesulfovibrio yellowstonii DSM 11347] gi|254806638|sp|B5YKE1|RRMF_THEYD RecName: Full=Probable rRNA maturation factor gi|206742969|gb|ACI22026.1| conserved hypothetical protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 159 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 3/107 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S++F +++ LN +YRG + T++LSFP + ++ +L LG+I++ + + +A Sbjct: 53 ISVIFVGDQKMKELNSKYRGKNSVTDILSFP--YLENEPSGNLFLGEIIINPKKVFSQAK 110 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL 162 K F L ++ HG LHLLGYDH V D +A M LE+ IL +L Sbjct: 111 QYNKTFWQELDRILAHGILHLLGYDHEVSDSEARKMRKLEQKILSNL 157 >gi|160902312|ref|YP_001567893.1| hypothetical protein Pmob_0846 [Petrotoga mobilis SJ95] gi|189040617|sp|A9BHG1|RRMF_PETMO RecName: Full=Probable rRNA maturation factor gi|160359956|gb|ABX31570.1| protein of unknown function UPF0054 [Petrotoga mobilis SJ95] Length = 143 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 15/140 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I V N EI+ + + ++ K + N + KG F EL+++ TD I N Sbjct: 1 MKINVINQQELREINSKKIKDIA-KKVLLNEVGKGNF------ELNILITDDKSITEFN- 52 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +YRG PT+VLSF S G S ++GDIV++ E IE +A G FE +++IH Sbjct: 53 KYRGKSTPTDVLSF------SYGLSEPVIGDIVISVESIEKQAPDFGNSFEEEFYYILIH 106 Query: 133 GFLHLLGYDHVD-DKDACVM 151 G LH++GYDH + ++DA M Sbjct: 107 GLLHIVGYDHENSEEDAKKM 126 >gi|240125026|ref|ZP_04737912.1| hypothetical protein NgonSK_02174 [Neisseria gonorrhoeae SK-92-679] gi|254493055|ref|ZP_05106226.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268683613|ref|ZP_06150475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|226512095|gb|EEH61440.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268623897|gb|EEZ56297.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] Length = 171 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++ L+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 51 ADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSERLYGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH+ D +A +ME E ++ G +PY D Sbjct: 111 KEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAEIMEAEEIRLMRAAGYPNPYRED 169 >gi|160945168|ref|ZP_02092394.1| hypothetical protein FAEPRAM212_02687 [Faecalibacterium prausnitzii M21/2] gi|158442899|gb|EDP19904.1| hypothetical protein FAEPRAM212_02687 [Faecalibacterium prausnitzii M21/2] gi|295105595|emb|CBL03139.1| conserved hypothetical protein TIGR00043 [Faecalibacterium prausnitzii SL3/3] Length = 163 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 9/117 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA------FASSDGCSSLMLGDIVLAY 108 E+S+ F D+ I LN +YR PT+VLSFP ++GC +MLGDIV++ Sbjct: 41 AEISVTFVDNAAIAELNNQYRNKPMPTDVLSFPLGENGKYDIDENNGC--MMLGDIVISM 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGI 164 E +AN+ G + + L +H LHLLGYDH + +A M E ++L LG+ Sbjct: 99 ERAMEQANLYGHPLQREVAFLTVHSMLHLLGYDHENGGLEAMRMREKEEAVLLQLGL 155 >gi|296188183|ref|ZP_06856575.1| metalloprotein, YbeY/ UPF0054family [Clostridium carboxidivorans P7] gi|296047309|gb|EFG86751.1| metalloprotein, YbeY/ UPF0054family [Clostridium carboxidivorans P7] Length = 166 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 17/122 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSD-GCSS 98 E+S++F D+ +I+ +N E R IDK T+VLSFP F+ D S Sbjct: 39 EVSVIFVDNEKIKEINKENRNIDKVTDVLSFPMLDYEKGKVFKDTYKDFNFSHVDLDEGS 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDIVL+ E + ++ F +V+L IH LHLLGYDH+++ + +M E I Sbjct: 99 LVLGDIVLSLEKAKEQSLEFNHSFIREVVYLTIHSVLHLLGYDHMEEDEKSIMRKREEQI 158 Query: 159 LE 160 LE Sbjct: 159 LE 160 >gi|118467556|ref|YP_888768.1| metalloprotease [Mycobacterium smegmatis str. MC2 155] gi|166227261|sp|A0R0T0|RRMF_MYCS2 RecName: Full=Probable rRNA maturation factor gi|118168843|gb|ABK69739.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 178 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 11/132 (8%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 LIS FV E + ELS+V DS + L+ + + PT+V+SFP G Sbjct: 16 PELISVARFVIEKMDVHPAAELSMVLLDSAAMADLHMRWMDLPGPTDVMSFPMDELEPGG 75 Query: 96 ------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 MLGDIVL E E +A G + L L +HG LHLLGYDH + + Sbjct: 76 RPDAPEPGPAMLGDIVLCPEFAEQQAAKAGHSLGHELALLTVHGVLHLLGYDHAEPDEEK 135 Query: 150 VMEGLERSILED 161 M L+R +LE+ Sbjct: 136 EMFALQRQLLEE 147 >gi|332707781|ref|ZP_08427808.1| conserved hypothetical protein TIGR00043 [Lyngbya majuscula 3L] gi|332353484|gb|EGJ32997.1| conserved hypothetical protein TIGR00043 [Lyngbya majuscula 3L] Length = 175 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 7/121 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS-------LMLGDIV 105 N ELSL TD+ I+ LN +YR ++PT+VL+F +S S L LGDIV Sbjct: 53 NSYELSLRLTDNSEIQALNSQYRKKNQPTDVLAFAALEVNSPKLSPQKQLSVPLYLGDIV 112 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G L L HG LHLLG+DH D++ M + ++L+ +G++ Sbjct: 113 ISVDTAVQQAKQHGHSVSTELAWLATHGLLHLLGWDHPDEESLLRMLDQQETLLQSVGLS 172 Query: 166 D 166 + Sbjct: 173 N 173 >gi|320160837|ref|YP_004174061.1| hypothetical protein ANT_14330 [Anaerolinea thermophila UNI-1] gi|319994690|dbj|BAJ63461.1| hypothetical protein ANT_14330 [Anaerolinea thermophila UNI-1] Length = 150 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++++ + +++LN ++ G + PT+VLSF F + LGDI+++YE E +A Sbjct: 36 DVTISIQNDEALKSLNAQFMGTEAPTDVLSFTMDFFDPE-TERQYLGDILISYERAEEQA 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 G EN L+ LI+HG LHL+GYDH +++ M + IL+ LG Sbjct: 95 QTAGHSTENELILLIVHGILHLVGYDHGTEEEKSKMWKTQSEILKQLG 142 >gi|240013460|ref|ZP_04720373.1| hypothetical protein NgonD_02219 [Neisseria gonorrhoeae DGI18] gi|240015899|ref|ZP_04722439.1| hypothetical protein NgonFA_01822 [Neisseria gonorrhoeae FA6140] gi|240080039|ref|ZP_04724582.1| hypothetical protein NgonF_01825 [Neisseria gonorrhoeae FA19] gi|240112248|ref|ZP_04726738.1| hypothetical protein NgonM_01454 [Neisseria gonorrhoeae MS11] gi|240114993|ref|ZP_04729055.1| hypothetical protein NgonPID1_01852 [Neisseria gonorrhoeae PID18] gi|240117278|ref|ZP_04731340.1| hypothetical protein NgonPID_02274 [Neisseria gonorrhoeae PID1] gi|240120531|ref|ZP_04733493.1| hypothetical protein NgonPI_01904 [Neisseria gonorrhoeae PID24-1] gi|240127539|ref|ZP_04740200.1| hypothetical protein NgonS_02629 [Neisseria gonorrhoeae SK-93-1035] gi|260441192|ref|ZP_05795008.1| hypothetical protein NgonDG_08936 [Neisseria gonorrhoeae DGI2] gi|268598309|ref|ZP_06132476.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268600661|ref|ZP_06134828.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268602973|ref|ZP_06137140.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268685916|ref|ZP_06152778.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|145572757|sp|Q5FA84|RRMF_NEIG1 RecName: Full=Probable rRNA maturation factor gi|268582440|gb|EEZ47116.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268584792|gb|EEZ49468.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268587104|gb|EEZ51780.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268626200|gb|EEZ58600.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 171 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++ L+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 51 ADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSERLYGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH+ D +A +ME E ++ G +PY D Sbjct: 111 KEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAEIMEAEEIRLMRAAGYPNPYRED 169 >gi|239998277|ref|ZP_04718201.1| Putative metalloprotease NGO0145 [Neisseria gonorrhoeae 35/02] Length = 171 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 ++ L+ D N +YRG D TNVLSF C S + GD+++ +++ Sbjct: 51 ADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSERLYGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL IHG LHL+GYDH+ D +A +ME E ++ G +PY D Sbjct: 111 KEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAEIMEAEEIRLMRAAGYPNPYRED 169 >gi|124268424|ref|YP_001022428.1| hypothetical protein Mpe_A3240 [Methylibium petroleiphilum PM1] gi|171769843|sp|A2SKV4|RRMF_METPP RecName: Full=Probable rRNA maturation factor gi|124261199|gb|ABM96193.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 149 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 8/114 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 + + +V TD R LN +YR D TNVL+F +++ D++L ++E E Sbjct: 43 ITVRIVGTDEGR--ALNRDYRQKDYATNVLTF------DYEAEPVVVADLILCAPVVERE 94 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 A G+ E H HL++HG LH G+DH + +A ME E +L LG DPY Sbjct: 95 ARDEGRSLEAHYAHLLVHGTLHAQGHDHEIEAEAQAMEARETEVLRALGYADPY 148 >gi|169824430|ref|YP_001692041.1| putative metal-dependent hydrolase [Finegoldia magna ATCC 29328] gi|238687740|sp|B0S1B1|RRMF_FINM2 RecName: Full=Probable rRNA maturation factor gi|167831235|dbj|BAG08151.1| putative metal-dependent hydrolase [Finegoldia magna ATCC 29328] Length = 153 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 6/111 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--TAFASSDGCSSLMLGDIVLAYEIIEI 113 E+SL F I LN +YR D T+VLSFP FA + +LGDI++ + Sbjct: 40 EISLSFVSESEIRKLNSDYRDKDSVTDVLSFPLDDDFA----IQTNLLGDIIICCKRAIE 95 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A + +V+L++H HLLGYDH+D+ D +M E+S L+++GI Sbjct: 96 QAKEYNHSIKREIVYLVVHSMFHLLGYDHIDESDRIIMRNKEKSALKEIGI 146 >gi|91762483|ref|ZP_01264448.1| hypothetical protein PU1002_04421 [Candidatus Pelagibacter ubique HTCC1002] gi|91718285|gb|EAS84935.1| hypothetical protein PU1002_04421 [Candidatus Pelagibacter ubique HTCC1002] Length = 153 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 5/141 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E ALW +I F ++ K Y + L+++ +++ I+ L Sbjct: 2 IKIDVVSECALWSKKIKRNK----TFFNSILKFFPKKYKFIGKKINLTILLSNNKNIKKL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R +KPT+VLSFP + S LGDIV++YE + N+ EF+ +V + Sbjct: 58 NKDFRNKNKPTDVLSFPFE-KKFNPKKSNYLGDIVISYEFMNKPKNISILEFKQKVVKIF 116 Query: 131 IHGFLHLLGYDHVDDKDACVM 151 IHGFLHLLG+DH+ KD M Sbjct: 117 IHGFLHLLGHDHIKLKDFKKM 137 >gi|197303388|ref|ZP_03168427.1| hypothetical protein RUMLAC_02110 [Ruminococcus lactaris ATCC 29176] gi|197297386|gb|EDY31947.1| hypothetical protein RUMLAC_02110 [Ruminococcus lactaris ATCC 29176] Length = 165 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 16/126 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----------------TAFASSDGCSS 98 E++L+ T++ I +N E RGID+PT+VLSFP T A + Sbjct: 38 AEINLLLTENQEIHEMNLEQRGIDRPTDVLSFPMIEYDAPGDFSVIDEETGDAFNPETGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LMLGDIV++ E + +A G + LI H LHL GYDH+++++ ME +R+I Sbjct: 98 LMLGDIVISKEKVLSQAEEYGHSPKREYAFLIAHSMLHLFGYDHMEEEERAEMEAHQRAI 157 Query: 159 LEDLGI 164 +E +GI Sbjct: 158 MEKVGI 163 >gi|34763927|ref|ZP_00144826.1| Hypothetical Metal-Binding Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886298|gb|EAA23575.1| Hypothetical Metal-Binding Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 162 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 5/110 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LSL+ TD+ I+ +N EYR + PT+V+SF A+ ++ + LGDI+++ E +E Sbjct: 50 LSLLLTDNENIQVINREYRDKNAPTDVISF--AYHETEDFNIGPYDTLGDIIISLERVEE 107 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A FE +++ HG LH+LGYDH+++ D +M E +IL G Sbjct: 108 QATEYNHLFEREFYYVLTHGILHILGYDHIEEDDKKLMREREEAILSSFG 157 >gi|222109709|ref|YP_002551973.1| hypothetical protein Dtpsy_0491 [Acidovorax ebreus TPSY] gi|254803969|sp|B9MCH3|RRMF_ACIET RecName: Full=Probable rRNA maturation factor gi|221729153|gb|ACM31973.1| protein of unknown function UPF0054 [Acidovorax ebreus TPSY] Length = 152 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ + + LN E+R D TNVL+F + + D+VL ++E E Sbjct: 42 AEITVRIVGAEEGQRLNREFRHKDYATNVLTFDY------QQEPVAVADLVLCAPVVERE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A K E H HL++HG LH G+DH ++DA ME E +IL++LG DPY Sbjct: 96 AREQNKTLEEHYAHLLVHGTLHAQGWDHETSEQDAQEMEVYETAILQELGFADPY 150 >gi|315452585|ref|YP_004072855.1| putative metalloprotease HPK [Helicobacter felis ATCC 49179] gi|315131637|emb|CBY82265.1| putative metalloprotease HPK [Helicobacter felis ATCC 49179] Length = 146 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 7/104 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV DS RI+ LN +YRG+DK T+VLSFP + + +LG +V+ E ++EA Sbjct: 35 VELVLVDSERIQELNRDYRGVDKSTDVLSFPIEMPAQN-----LLGSVVINVECAQMEAQ 89 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 G + L L +HG+LHLLGYDH +KD LE +++ Sbjct: 90 KRGHSLLDELRLLFLHGYLHLLGYDH--EKDNGEQRALEEEMIQ 131 >gi|315038513|ref|YP_004032081.1| Metalloprotease [Lactobacillus amylovorus GRL 1112] gi|312276646|gb|ADQ59286.1| Metalloprotease [Lactobacillus amylovorus GRL 1112] Length = 174 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 17/135 (12%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML- 101 L++K K+N +E+S+ F D +N +YR D+PT+V+SF A DG S+ L Sbjct: 31 LLAKKEIGKDNNLEMSINFVDEDCSHEINLKYRDKDRPTDVISF----AIEDGEDSIDLA 86 Query: 102 ------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 GD+ + +I+ + G F+ + ++HGFLHL GYDH+ +A Sbjct: 87 AFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFGYTVVHGFLHLNGYDHIKPDEAK 146 Query: 150 VMEGLERSILEDLGI 164 M G++ +LED G+ Sbjct: 147 EMFGIQGKVLEDYGL 161 >gi|257439766|ref|ZP_05615521.1| putative metalloprotease [Faecalibacterium prausnitzii A2-165] gi|257197786|gb|EEU96070.1| putative metalloprotease [Faecalibacterium prausnitzii A2-165] Length = 163 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 9/117 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA------FASSDGCSSLMLGDIVLAY 108 E+S+ F D+ I LN +YR PT+VLSFP ++GC MLGDIV++ Sbjct: 41 AEISVTFVDNAAIAELNNQYRNKPMPTDVLSFPLGENGVYDVDENNGCK--MLGDIVISM 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGI 164 E + +A + G + + L +H LHLLGYDH + +A M E ++L LG+ Sbjct: 99 ERAQEQATLYGHPLQREVAFLTVHSMLHLLGYDHENGGLEAMRMREKEEAVLTQLGL 155 >gi|296137315|ref|YP_003644557.1| protein of unknown function UPF0054 [Thiomonas intermedia K12] gi|295797437|gb|ADG32227.1| protein of unknown function UPF0054 [Thiomonas intermedia K12] Length = 175 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 7/113 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++L F + LN YRG D TNVL+F D + DIVL ++ EA Sbjct: 61 QITLRFVAADEGRALNRAYRGKDYATNVLTF-------DYSHWPVQADIVLCCPVVAGEA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H HL+IHG LH G+DH + +A ME E ++L+ GI+DPY Sbjct: 114 LAQHKPLGSHYAHLVIHGLLHAQGWDHQTELEAQEMERHEVTVLQRFGISDPY 166 >gi|251781164|ref|ZP_04824084.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085479|gb|EES51369.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 166 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 17/126 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----------------TAFASSD-GCSS 98 E+SL+F D+ I +N E R ID+ T+VLSFP F+ +D Sbjct: 39 EISLLFVDNEEIREINNETRNIDRATDVLSFPMLDYPDKKVFKEVYTENDFSEADFDGDD 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDIVL+ E ++ +E +L++H LHLLGYDH++++D M E I Sbjct: 99 LVLGDIVLSLERALEQSKEYNHSYEREASYLVVHSVLHLLGYDHMEEEDKVKMRKREEEI 158 Query: 159 LEDLGI 164 L L I Sbjct: 159 LTALDI 164 >gi|313884192|ref|ZP_07817958.1| translation metalloprotein YbeY [Eremococcus coleocola ACS-139-V-Col8] gi|312620639|gb|EFR32062.1| translation metalloprotein YbeY [Eremococcus coleocola ACS-139-V-Col8] Length = 157 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 12/151 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENI-VELSLVFTDSHRIETLNFEYRGIDKPTN 82 D+ + + +V + V L + + +N V++S+V ++ I LN +YR ID+PT+ Sbjct: 7 DDNNFLSQAQVELVQDVIKLAGQKLILPDNFEVDISIVTNEA--IHELNRDYRNIDRPTD 64 Query: 83 VLSFP-------TAFASSDGCSSL--MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 VLSF F D L LGDI++++ I+ +A G FE L L +HG Sbjct: 65 VLSFALEETAEDDPFGQIDMSEELGIFLGDIIISFPKIQEQATEYGHSFERELAFLAVHG 124 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FLHL GYDH M GL+ +L G+ Sbjct: 125 FLHLNGYDHQSPDQEKEMFGLQEEVLSAYGL 155 >gi|295100850|emb|CBK98395.1| conserved hypothetical protein TIGR00043 [Faecalibacterium prausnitzii L2-6] Length = 163 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 9/117 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA------FASSDGCSSLMLGDIVLAY 108 E+S+ F D+ I LN +YR PT+VLSFP ++GC MLGDIV++ Sbjct: 41 AEISVTFVDNAAIAELNNQYRNKPMPTDVLSFPLGENGVYDVDENNGCK--MLGDIVISM 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGI 164 E + +A + G + + L +H LHLLGYDH + +A M E ++L LG+ Sbjct: 99 ERAQEQATLYGHPLQREVAFLTVHSMLHLLGYDHENGGLEAMRMREKEEAVLTQLGL 155 >gi|16331480|ref|NP_442208.1| metalloprotease [Synechocystis sp. PCC 6803] gi|2496791|sp|Q55142|RRMF_SYNY3 RecName: Full=Probable rRNA maturation factor gi|1001136|dbj|BAA10278.1| slr0053 [Synechocystis sp. PCC 6803] Length = 179 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA------FASSDGCSSLMLGDIVLAYE 109 EL+L+FT RI+ LN ++R DKPT+VL+F S + L LGDIV++ E Sbjct: 59 ELTLLFTGDRRIQELNRKFRHQDKPTDVLAFAALEGDFPLIESEETEEPLYLGDIVISLE 118 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 + +A G + +V L HG LHLLG+DH D+ M + +L +G N P Sbjct: 119 RADHQARERGHSAKLEVVWLTAHGLLHLLGWDHPDEASLTTMLSEQSHLLTLIGQNPP 176 >gi|317495248|ref|ZP_07953618.1| hypothetical protein HMPREF0432_00220 [Gemella moribillum M424] gi|316914670|gb|EFV36146.1| hypothetical protein HMPREF0432_00220 [Gemella moribillum M424] Length = 157 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-------G 102 + I E+SL F I+ +N +YRG D PT+V+SF D + L G Sbjct: 34 INTKITEMSLSFVSKEEIQEINRDYRGKDVPTDVISFALNDEIEDEVHIIGLEDEFNSIG 93 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI++ +I +A F+ + L +HGFLHLLGYDH++++D M + +ILE+ Sbjct: 94 DIIICVDIAREQAQEYNHSFDREIGFLAVHGFLHLLGYDHMNEEDEKEMFDKQEAILEEF 153 Query: 163 GI 164 G+ Sbjct: 154 GL 155 >gi|212638691|ref|YP_002315211.1| putative metal-dependent hydrolase [Anoxybacillus flavithermus WK1] gi|212560171|gb|ACJ33226.1| Predicted metal-dependent hydrolase [Anoxybacillus flavithermus WK1] Length = 194 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAY 108 E+S+ F D+ +I +N +YRG D+PT+V+SF + + +LGDI+++ Sbjct: 77 AEVSVTFVDNEKIREINRDYRGKDQPTDVISFALEEMGEEEIAIVGADVPPVLGDIIISV 136 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G F L L +HGFLHLLGYDH +++ VM + +L+ G+ Sbjct: 137 PKAREQAEQYGHSFMRELGFLAVHGFLHLLGYDHETEEEEKVMFAKQEQLLQQFGLT 193 >gi|257865831|ref|ZP_05645484.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257872166|ref|ZP_05651819.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257875459|ref|ZP_05655112.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257799765|gb|EEV28817.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257806330|gb|EEV35152.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257809625|gb|EEV38445.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 158 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----------LGDI 104 E+S+ F D+ I+ +N EYRG D PT+V+SF + + S + LGDI Sbjct: 37 TEMSVTFMDNAAIQEINREYRGKDMPTDVISFAFEEETDEELSIIFDEALEELPRDLGDI 96 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E + +A G ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 97 MISIERAKEQAAEYGHTYDRELGFLALHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGL 156 Query: 165 N 165 Sbjct: 157 K 157 >gi|283797897|ref|ZP_06347050.1| putative metalloprotease [Clostridium sp. M62/1] gi|291074362|gb|EFE11726.1| putative metalloprotease [Clostridium sp. M62/1] gi|295091897|emb|CBK78004.1| conserved hypothetical protein TIGR00043 [Clostridium cf. saccharolyticum K10] gi|295115184|emb|CBL36031.1| conserved hypothetical protein TIGR00043 [butyrate-producing bacterium SM4/1] Length = 165 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 20/123 (16%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA------------------FASSDGC 96 E++++ TD I +N E+RGID+ T+VLSFP A F G Sbjct: 38 AEVNVLLTDDEEIHRINREFRGIDRATDVLSFPMADYEQPAEFEKLEERPEDYFNPETG- 96 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 L+LGDIV++ + +E +A G L L H LHL GYDH+++++ VME + Sbjct: 97 -ELLLGDIVISVDKVEEQAEKYGHSEARELAFLTAHSMLHLFGYDHMEEEERLVMEKKQE 155 Query: 157 SIL 159 +IL Sbjct: 156 AIL 158 >gi|113866555|ref|YP_725044.1| unkown domain/putative metalloprotease fusion protein [Ralstonia eutropha H16] gi|113525331|emb|CAJ91676.1| diacylglycerol kinase [Ralstonia eutropha H16] Length = 248 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L++ F D TLN YRG D TNVL+F A D + GDIVL ++E EA Sbjct: 135 LTIRFVDEEEGRTLNRTYRGKDYATNVLTFAYAENEEDPVT----GDIVLCCPVVETEAR 190 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E H HLI+HG LH GY+H +D +A ME +E L+ LG DPY+ D Sbjct: 191 EQRKPLEAHYAHLIVHGVLHAQGYEHEEDAEAEEMEAIETETLQALGYADPYQGD 245 >gi|317128316|ref|YP_004094598.1| hypothetical protein Bcell_1604 [Bacillus cellulosilyticus DSM 2522] gi|315473264|gb|ADU29867.1| protein of unknown function UPF0054 [Bacillus cellulosilyticus DSM 2522] Length = 156 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAYE 109 E+S+ F + +I+ LN EYR D+PT+VLSF + +G L LGDI+++ Sbjct: 41 AEVSITFVEDDKIQELNREYRDKDQPTDVLSFALNEGDQQPITGEGLPEL-LGDIIISVP 99 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G F L L +HGFLHLLGYDH +++ M + ILE G+ Sbjct: 100 RAKQQAEEYGHGFNRELCFLAVHGFLHLLGYDHNTEEEEREMFKKQEEILEKYGLK 155 >gi|330686100|gb|EGG97721.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU121] Length = 155 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 5/115 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS-----LMLGDIVLAYE 109 ELS+ F D I+ +N YR DK T+V+SF D S +LGDI++ + Sbjct: 38 AELSITFVDKSEIQEINKMYRDKDKVTDVISFALEEDEPDIDMSEFNIPRVLGDIIICTD 97 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + ++ G FE L L +HGFLHLLGYDH++++D M G + +IL G+ Sbjct: 98 VAQEQSESYGHSFERELGFLALHGFLHLLGYDHMNEEDEKEMFGRQDAILNAYGL 152 >gi|239637618|ref|ZP_04678590.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596836|gb|EEQ79361.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 155 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 5/116 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS-----LMLGDIVLAYE 109 ELS+ F D I+ +N YR DK T+V+SF D S +LGDI++ + Sbjct: 38 AELSITFVDKSEIQEINKMYRDKDKVTDVISFALEEDEPDIDMSEFDIPRVLGDIIICTD 97 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + + ++ G FE L L +HGFLHLLGYDH++++D M G + +IL G+ Sbjct: 98 VAQEQSESYGHSFERELGFLALHGFLHLLGYDHMNEEDEKEMFGRQDAILNAYGLT 153 >gi|326203510|ref|ZP_08193374.1| protein of unknown function UPF0054 [Clostridium papyrosolvens DSM 2782] gi|325986330|gb|EGD47162.1| protein of unknown function UPF0054 [Clostridium papyrosolvens DSM 2782] Length = 161 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 17/150 (11%) Query: 32 CEVVFAKAVSNLISKGY---FVKENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 +V+ K + NLI K E + E+S++ D + I +N E+R IDK T+VLS Sbjct: 9 AKVIIDKKIENLIEKTIKMCMKSEQLDKDYEVSVLIVDDNEIRDINREHRDIDKSTDVLS 68 Query: 86 FP------TAFASSDG-----CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 FP S +G L+LGDI+++ E + +A G F+ + L H Sbjct: 69 FPLVDFKDGKLISDEGDYDLEMGELILGDIIISAETAQRQAEAYGHSFDREMAFLTAHSC 128 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH++ + +M + IL+++G+ Sbjct: 129 FHLLGYDHMEKNEEEIMFKKQEDILKEMGL 158 >gi|307243719|ref|ZP_07525859.1| translation metalloprotein YbeY [Peptostreptococcus stomatis DSM 17678] gi|306492928|gb|EFM64941.1| translation metalloprotein YbeY [Peptostreptococcus stomatis DSM 17678] Length = 153 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 10/116 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYE 109 E+SL F + I +N +YR IDK T+VLSFP DG ++ LGDIV++ E Sbjct: 40 EVSLSFVSNDEIREINRDYRNIDKVTDVLSFPMY----DGEEVDVDFGAISLGDIVISIE 95 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G E + L+ H HLLGYDH+++++A M E +L LGI Sbjct: 96 RAADQAKDFGHSLEREVCFLVCHSMFHLLGYDHMEEEEAKEMHAKEEDVLSQLGIT 151 >gi|167972975|ref|ZP_02555252.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167973948|ref|ZP_02556225.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167975657|ref|ZP_02557934.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167988132|ref|ZP_02569803.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168362746|ref|ZP_02695920.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867954|ref|ZP_03079951.1| putative metalloprotease [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273580|ref|ZP_03206116.1| putative metalloprotease [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554156|ref|YP_002284937.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550362|ref|ZP_03771311.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551596|ref|ZP_03772542.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226702100|sp|B5ZBZ7|RRMF_UREU1 RecName: Full=Probable rRNA maturation factor gi|171903176|gb|EDT49465.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209105|gb|EDU06148.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019077|gb|EDU57117.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998095|gb|EDU67192.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659878|gb|EDX53258.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660350|gb|EDX53610.1| putative metalloprotease [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250100|gb|EDY74880.1| putative metalloprotease [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541657|gb|ACI59886.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379411|gb|EEH01776.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379516|gb|EEH01878.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 155 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 12/146 (8%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 +++ DEI+L+ + ++NLIS K KE E F D I+ +N +YR D Sbjct: 11 SVFNDEIYLQRF------EQIANLISIKLNIDKERFFECH--FVDEKTIQEINRDYRNKD 62 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 T+V+SF AF + + L LG++ + Y+ + +A G FE L L HG LHLL Sbjct: 63 YITDVISF--AFDDGEIITPL-LGEMYICYQKVVNQAKEFGHSFERELCFLFTHGLLHLL 119 Query: 139 GYDHVDDKDACVMEGLERSILEDLGI 164 GYDH++ ++ +M GL+ IL +L I Sbjct: 120 GYDHIEVEEEKIMFGLQDEILNELNI 145 >gi|213161076|ref|ZP_03346786.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 78 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 46/69 (66%) Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD+++ +++E EA K E H H+++HG LHLLGYDH+DD +A ME LE I+ Sbjct: 3 LLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIM 62 Query: 160 EDLGINDPY 168 +G DPY Sbjct: 63 LAMGYEDPY 71 >gi|297584645|ref|YP_003700425.1| hypothetical protein Bsel_2356 [Bacillus selenitireducens MLS10] gi|297143102|gb|ADH99859.1| protein of unknown function UPF0054 [Bacillus selenitireducens MLS10] Length = 156 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 18/145 (12%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 L+ + +V+F+ + I G E+S+ RI+ LN +YR D+PT+VLSF Sbjct: 22 LQLIRDVLFSAMKAEDIPMG-------TEVSVSIVTDGRIQELNRDYREKDRPTDVLSF- 73 Query: 88 TAFASSDGCSSL-------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 A DG + MLGDI+++ + +++ G FE L L +HGFLHL GY Sbjct: 74 ---ALHDGEEQIIAPTIPDMLGDIIISLPAVYRQSDEYGHSFERELAFLTVHGFLHLCGY 130 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH ++ D M + +L GI Sbjct: 131 DHENEADEQKMFARQEELLTAYGIQ 155 >gi|86159141|ref|YP_465926.1| hypothetical protein Adeh_2719 [Anaeromyxobacter dehalogenans 2CP-C] gi|123498733|sp|Q2ILG1|RRMF_ANADE RecName: Full=Probable rRNA maturation factor gi|85775652|gb|ABC82489.1| protein of unknown function UPF0054 [Anaeromyxobacter dehalogenans 2CP-C] Length = 193 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS++ RI TLN E+R D+ T+VLSFP + G +LGD+V++ + Sbjct: 35 AELSILLVTDRRIRTLNREWRQKDQATDVLSFPISEPPGAGA---LLGDVVISLDTAARR 91 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 A G+ L + HG LHLLGYDH DA M Sbjct: 92 ARSDGRRVGAELDRYLAHGILHLLGYDHERPADARAM 128 >gi|327440938|dbj|BAK17303.1| predicted metal-dependent hydrolase [Solibacillus silvestris StLB046] Length = 161 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIV 105 E+ E+S+ F + I +N EYR D+PT+V+SF + +LGDI+ Sbjct: 35 EDGSEVSVTFVTNEAIHEINREYRDKDQPTDVISFALEEMGEGELQIIGEGIPRILGDII 94 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G FE L L +HGFLHLLGYDH+ +D VM G + +IL+ G+ Sbjct: 95 ISTDRTREQAAEYGHTFERELGFLAVHGFLHLLGYDHMTREDEKVMFGKQDTILQSYGLG 154 >gi|260886787|ref|ZP_05898050.1| putative metalloprotease [Selenomonas sputigena ATCC 35185] gi|330839401|ref|YP_004413981.1| protein of unknown function UPF0054 [Selenomonas sputigena ATCC 35185] gi|260863386|gb|EEX77886.1| putative metalloprotease [Selenomonas sputigena ATCC 35185] gi|329747165|gb|AEC00522.1| protein of unknown function UPF0054 [Selenomonas sputigena ATCC 35185] Length = 179 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 E+S+ TD I LN EYR ID+PT+V+SF A + G + +LGDIVL+ E Sbjct: 38 AEVSITLTDDAHIHVLNREYRRIDRPTDVISFALNESEEPAIAGGPAVNVLGDIVLSVER 97 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +A G +V L +HG LHLLGYDHV Sbjct: 98 AAAQAADYGHSLRREIVFLTVHGMLHLLGYDHV 130 >gi|320529428|ref|ZP_08030516.1| conserved hypothetical protein TIGR00043 [Selenomonas artemidis F0399] gi|320138394|gb|EFW30288.1| conserved hypothetical protein TIGR00043 [Selenomonas artemidis F0399] Length = 154 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 15/147 (10%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 GDE +R E V G E+S+ T+ I +N +YRG+D+PT+ Sbjct: 18 GDEAAVRRAVETV-----------GRLYGAEGAEVSVTLTNDAYIHEINRQYRGVDRPTD 66 Query: 83 VLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 V+SF + D + +LGD+V++ E +A G + L L +HG LHLL Sbjct: 67 VISFALMESEEPEILDDPAGDVLGDLVISLERTRAQAEEYGHSYLRELSFLTVHGMLHLL 126 Query: 139 GYDHVDDKDACVMEGLERSILEDLGIN 165 GYDH+++ + ME +R ++E LGI Sbjct: 127 GYDHMEEAERAEMEEEQRHVMEALGIG 153 >gi|310828432|ref|YP_003960789.1| hypothetical protein ELI_2845 [Eubacterium limosum KIST612] gi|308740166|gb|ADO37826.1| hypothetical protein ELI_2845 [Eubacterium limosum KIST612] Length = 156 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 51 KENIV---ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSS------LM 100 +EN++ E+S I+ LN EYR IDK T+VLSFP F + + +M Sbjct: 35 QENVLVPCEISFSLVIPEEIQELNAEYRNIDKETDVLSFPMLEFPEDEDMLTYETGIPVM 94 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDIV++ +A G E + +L +H LHLLGYDH+++ + VM E++I+ Sbjct: 95 LGDIVISTTRAAEQAEAYGHSLEREICYLSVHSVLHLLGYDHMEEDEKRVMRAREKAIMG 154 Query: 161 D 161 D Sbjct: 155 D 155 >gi|164686281|ref|ZP_02210311.1| hypothetical protein CLOBAR_02719 [Clostridium bartlettii DSM 16795] gi|164601883|gb|EDQ95348.1| hypothetical protein CLOBAR_02719 [Clostridium bartlettii DSM 16795] Length = 153 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 58/111 (52%), Gaps = 2/111 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEI 113 E+SL F D+ I LN EYRGID+ T+VLSFP G LGDIV++ E Sbjct: 40 EVSLSFVDNKEIHELNKEYRGIDRATDVLSFPLLVEDEFGVDFGEESLGDIVISLERAFE 99 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ FE + L+ H HLLGYDH +++ M E IL LGI Sbjct: 100 QSREYNHSFEREVCFLVCHSMFHLLGYDHDTEENTKEMSQKEEYILNKLGI 150 >gi|145558833|sp|Q0KE95|RRMF_CUPNH RecName: Full=Probable rRNA maturation factor Length = 198 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 63/115 (54%), Gaps = 4/115 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L++ F D TLN YRG D TNVL+F A D + GDIVL ++E EA Sbjct: 85 LTIRFVDEEEGRTLNRTYRGKDYATNVLTFAYAENEEDPVT----GDIVLCCPVVETEAR 140 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E H HLI+HG LH GY+H +D +A ME +E L+ LG DPY+ D Sbjct: 141 EQRKPLEAHYAHLIVHGVLHAQGYEHEEDAEAEEMEAIETETLQALGYADPYQGD 195 >gi|116629757|ref|YP_814929.1| metal-dependent hydrolase [Lactobacillus gasseri ATCC 33323] gi|238853406|ref|ZP_04643785.1| putative metalloprotease [Lactobacillus gasseri 202-4] gi|282851785|ref|ZP_06261148.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus gasseri 224-1] gi|311110601|ref|ZP_07711998.1| putative metalloprotease [Lactobacillus gasseri MV-22] gi|122273305|sp|Q042Y1|RRMF_LACGA RecName: Full=Probable rRNA maturation factor gi|116095339|gb|ABJ60491.1| Predicted metal-dependent hydrolase [Lactobacillus gasseri ATCC 33323] gi|238833978|gb|EEQ26236.1| putative metalloprotease [Lactobacillus gasseri 202-4] gi|282557027|gb|EFB62626.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus gasseri 224-1] gi|311065755|gb|EFQ46095.1| putative metalloprotease [Lactobacillus gasseri MV-22] Length = 175 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 19/158 (12%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + DE++ + + ++NL+ +K K+N E+S+ F S +I +N +YRG D+ Sbjct: 8 FNDEVNFLKNDDKDWIPWITNLLLSAKKEINKKNAQEMSINFVSSEKIHEINKKYRGKDR 67 Query: 80 PTNVLSFPTAFASSDGCSSLML-------------GDIVLAYEIIEIEANVLGKEFENHL 126 PT+V+SF A DG + GD+ L E+I+ + F Sbjct: 68 PTDVISF----AIEDGLDEDFMAAFNDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREF 123 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + ++HG+LHL G+DH++D +A VM G++ +L + G+ Sbjct: 124 GYTLVHGYLHLNGFDHIEDDEAKVMFGIQGKVLREYGL 161 >gi|329766982|ref|ZP_08258510.1| hypothetical protein HMPREF0428_00207 [Gemella haemolysans M341] gi|328837707|gb|EGF87332.1| hypothetical protein HMPREF0428_00207 [Gemella haemolysans M341] Length = 157 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 7/122 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-------G 102 V I E+SL F I+ +N +YRG D PT+V+SF D + L G Sbjct: 34 VDTEITEMSLSFVSKEEIQEINRDYRGKDVPTDVISFALNDEVEDEIDIIGLEDEINSIG 93 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 D+++ +I +A F+ + L +HGFLHLLGYDH++++D M G + ILE Sbjct: 94 DVIICVDIAHEQAKEYEHSFDREIGFLAVHGFLHLLGYDHMNEEDEKEMFGKQDEILEKF 153 Query: 163 GI 164 G+ Sbjct: 154 GL 155 >gi|118443989|ref|YP_878555.1| metalloprotease [Clostridium novyi NT] gi|145572747|sp|A0Q1Q3|RRMF_CLONN RecName: Full=Probable rRNA maturation factor gi|118134445|gb|ABK61489.1| conserved hypothetical protein [Clostridium novyi NT] Length = 166 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 32/169 (18%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV----ELSLVFTDSHRIETLNFE 73 ++ + DE L TL E++ Y +KE V E+S++ D+ I+ +N E Sbjct: 8 QDKIKIDEKTLNTLDEII-----------KYALKEEEVYVNTEVSVILIDNDTIKEINKE 56 Query: 74 YRGIDKPTNVLSFPT----------------AF-ASSDGCSSLMLGDIVLAYEIIEIEAN 116 R IDK T+VLSFP F AS L+LGDIVL+ E E ++ Sbjct: 57 TRDIDKVTDVLSFPMLDYPKGKTYKEVYKDYEFDASYLDEGELVLGDIVLSLERAEEQSK 116 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F + +L IH LHLLGYDH++D + +M E IL I Sbjct: 117 EFGHSFLREVCYLTIHSVLHLLGYDHMEDDEKAIMRKREEEILNKFSIK 165 >gi|304438430|ref|ZP_07398370.1| metal-dependent hydrolase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368513|gb|EFM22198.1| metal-dependent hydrolase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 153 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEII 111 E+S+ TD I LN +YR +D+PT+VLSF + D ++LGD+V++ E + Sbjct: 39 EVSVTLTDDAHIHVLNRDYRSVDRPTDVLSFALTESEEPAILDAPYGVVLGDLVISLERV 98 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G L L +HG LHLLGYDH++++D ME +R +++ LGI Sbjct: 99 AAQAEEYGHSVLRELSFLTVHGMLHLLGYDHIEEEDRVEMEEEQRHVMDVLGI 151 >gi|299144158|ref|ZP_07037238.1| putative metalloprotease [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518643|gb|EFI42382.1| putative metalloprotease [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 148 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIV 105 K + ENI+ +S+ F D I+ LN +RG+D T+VLSFP +LGD+V Sbjct: 31 KSEKLDENIM-VSVSFVDDEEIQELNKNFRGVDSSTDVLSFP--IDDEFQIEERILGDVV 87 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + + +A E + +L +H LHLLGYDH++++D +M E+ I+++L I Sbjct: 88 INTKRVIEQAQEFRHSNEREMSYLTVHSVLHLLGYDHIEEEDRLIMRSKEKIIMDNLKI 146 >gi|295424888|ref|ZP_06817603.1| metal-dependent hydrolase [Lactobacillus amylolyticus DSM 11664] gi|295065454|gb|EFG56347.1| metal-dependent hydrolase [Lactobacillus amylolyticus DSM 11664] Length = 185 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 11/132 (8%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----------TAFAS 92 L++K K+N +E+S+ F + R +N +YR D+PT+V+SF AFA Sbjct: 42 LLTKTKIGKKNNLEMSINFVNEDRSHEINLKYRDKDRPTDVISFAIEDGEDDLDMAAFAD 101 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 D +GD+ + +I+ + G F+ + ++HGFLHL GYDH+ ++A M Sbjct: 102 -DPDFQEDIGDLFMCPSVIKRHSVEYGTGFDREFGYTVVHGFLHLNGYDHIKPEEAKEMF 160 Query: 153 GLERSILEDLGI 164 G++ +LE+ G+ Sbjct: 161 GIQGKVLEEYGL 172 >gi|126736950|ref|ZP_01752685.1| hypothetical protein RSK20926_10984 [Roseobacter sp. SK209-2-6] gi|126721535|gb|EBA18238.1| hypothetical protein RSK20926_10984 [Roseobacter sp. SK209-2-6] Length = 169 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/128 (43%), Positives = 72/128 (56%), Gaps = 12/128 (9%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLM----------LGD 103 E++L+ +I LN E+RG TNVLS+P A G L LGD Sbjct: 39 EVALLACGDEKIAELNSEFRGKPVATNVLSWPAEDLAAEEPGGQPLQPEPDFTGEIPLGD 98 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I +A++ EA K +HL HL++HG LHLLGYDH+ D DA VME LE IL +G Sbjct: 99 IAIAFDTCLREAKAAQKPLADHLRHLLVHGVLHLLGYDHIRDPDATVMEALEVEILGKMG 158 Query: 164 INDPYEVD 171 I+DPYE+D Sbjct: 159 IDDPYEID 166 >gi|188588423|ref|YP_001920266.1| putative metalloprotease [Clostridium botulinum E3 str. Alaska E43] gi|238689660|sp|B2V2J8|RRMF_CLOBA RecName: Full=Probable rRNA maturation factor gi|188498704|gb|ACD51840.1| conserved hypothetical protein [Clostridium botulinum E3 str. Alaska E43] Length = 166 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 17/126 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----------------TAFASSD-GCSS 98 E+SL+F D+ I +N E R ID+ T+VLSFP F+ +D Sbjct: 39 EISLLFVDNEEIREINNETRNIDRATDVLSFPMLDYPEKKVFKEVYTENDFSEADFDGDD 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDIVL+ E ++ +E +L++H LHLLGYDH+++ D M E I Sbjct: 99 LVLGDIVLSLERALEQSKEYNHSYEREASYLVVHSVLHLLGYDHMEEDDKVKMRKREEEI 158 Query: 159 LEDLGI 164 L L I Sbjct: 159 LTALDI 164 >gi|187933939|ref|YP_001885105.1| metalloprotease [Clostridium botulinum B str. Eklund 17B] gi|238691633|sp|B2TM06|RRMF_CLOBB RecName: Full=Probable rRNA maturation factor gi|187722092|gb|ACD23313.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund 17B] Length = 166 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 17/126 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----------------TAFASSD-GCSS 98 E+SL+F D+ I +N E R ID+ T+VLSFP F+ +D Sbjct: 39 EISLLFVDNEEIREINNETRNIDRATDVLSFPMLDYPEKKVFKEVYTENDFSEADFDGDD 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGD+VL+ E ++ +E +L++H LHLLGYDH++++D M E I Sbjct: 99 LVLGDVVLSLERALEQSKEYNHSYEREASYLVVHSVLHLLGYDHMEEEDKVKMRKREEEI 158 Query: 159 LEDLGI 164 L L I Sbjct: 159 LTALDI 164 >gi|73662495|ref|YP_301276.1| hypothetical protein SSP1186 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642702|sp|Q49Y13|RRMF_STAS1 RecName: Full=Probable rRNA maturation factor gi|72495010|dbj|BAE18331.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 153 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIEI 113 LS+ F D I+ +N YR DK T+V+SF + M LGDI++ ++ + Sbjct: 40 LSVTFVDKDEIQEINKMYRDKDKVTDVISFALEEDEPEITGIEMPRVLGDIIICTDVAQE 99 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A+ G FE L L +HGFLHLLGYDH++++D M G + IL G+ Sbjct: 100 QADSYGHSFERELGFLALHGFLHLLGYDHMNEQDEKQMFGRQDQILNAYGLT 151 >gi|57233865|ref|YP_182081.1| hypothetical protein DET1370 [Dehalococcoides ethenogenes 195] gi|123618332|sp|Q3Z6R8|RRMF_DEHE1 RecName: Full=Probable rRNA maturation factor gi|57224313|gb|AAW39370.1| conserved hypothetical protein TIGR00043 [Dehalococcoides ethenogenes 195] Length = 172 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 12/137 (8%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF- 86 + L F K +++ K N EL +V T I+ LN +YRG+D+PT+VLSF Sbjct: 23 FKKLVSTPFLKKIASKTLKAQAADPN-SELGIVITGQEEIKDLNLKYRGLDEPTDVLSFY 81 Query: 87 -----PTAFASSDGCSS-----LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 P ++D + + LG+++++Y E++A + + L+IHG LH Sbjct: 82 MLEENPENLTAADDFPTPPDENIHLGEVIISYPQAELQATAASHSVSHEIAFLLIHGVLH 141 Query: 137 LLGYDHVDDKDACVMEG 153 LLGYDH + VM+ Sbjct: 142 LLGYDHHEVVAEAVMKS 158 >gi|317122974|ref|YP_004102977.1| hypothetical protein Tmar_2170 [Thermaerobacter marianensis DSM 12885] gi|315592954|gb|ADU52250.1| protein of unknown function UPF0054 [Thermaerobacter marianensis DSM 12885] Length = 173 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 55/108 (50%), Gaps = 11/108 (10%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-----------AFASSDGCSSLMLGD 103 VE+SL F D I LN YRG D PT+VLSFP + G L LGD Sbjct: 50 VEVSLTFVDDAAIHELNRRYRGKDAPTDVLSFPQLEQEEIAALRDPVPAVLGPDLLPLGD 109 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +V++ E +A G + + +L+ HG LHLLGYDH D + +M Sbjct: 110 VVISLERAAAQAREYGHSLDREVGYLLAHGVLHLLGYDHPDAEGERLM 157 >gi|138896065|ref|YP_001126518.1| putative metalloprotease [Geobacillus thermodenitrificans NG80-2] gi|196248958|ref|ZP_03147658.1| protein of unknown function UPF0054 [Geobacillus sp. G11MC16] gi|166228371|sp|A4IR19|RRMF_GEOTN RecName: Full=Probable rRNA maturation factor gi|134267578|gb|ABO67773.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196211834|gb|EDY06593.1| protein of unknown function UPF0054 [Geobacillus sp. G11MC16] Length = 156 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAY 108 E+S+ F D+ RI +N +YRG D PT+VLSF + +LGDI+++ Sbjct: 39 AEVSVSFVDNERIRVMNRDYRGKDAPTDVLSFALEEEGEGEIDIIGADVPPVLGDIIISI 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G F L L +HGFLHLLGYDH +++ VM + IL G+ Sbjct: 99 PKAKEQAAEYGHSFMRELGFLAVHGFLHLLGYDHETEEEERVMFAKQEEILTRFGLT 155 >gi|261364225|ref|ZP_05977108.1| putative metalloprotease [Neisseria mucosa ATCC 25996] gi|288567840|gb|EFC89400.1| putative metalloprotease [Neisseria mucosa ATCC 25996] Length = 171 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF D S + GD+++ +++ Sbjct: 51 TDISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQVSDDLCGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL +HG LHL+GYDH+++ +A ME LE +++ G +PY+ D Sbjct: 111 KEAAEQGKTAEQHFAHLTMHGTLHLMGYDHIEEAEAEEMEALEIRLMQAAGYPNPYQED 169 >gi|160892625|ref|ZP_02073415.1| hypothetical protein CLOL250_00155 [Clostridium sp. L2-50] gi|156865666|gb|EDO59097.1| hypothetical protein CLOL250_00155 [Clostridium sp. L2-50] Length = 170 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 16/130 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDG---------CSSL 99 E+ ++ TD+ I+T+N R ID PT+VLSFP F+ DG L Sbjct: 39 EIYVLLTDNSGIQTINNCQRNIDAPTDVLSFPLIDYKEPGDFSVVDGDTCDYFNPESGEL 98 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 MLGDI+++ + + +A L L+ H LHL GYDH+D+++ ME L+ IL Sbjct: 99 MLGDIIISMDRVYEQAKSYNHSNTRELAFLVAHSMLHLFGYDHIDEEERKQMEDLQEQIL 158 Query: 160 EDLGINDPYE 169 + G YE Sbjct: 159 NEKGYTRDYE 168 >gi|228906475|ref|YP_932284.2| unkown domain/metalloprotease fusion protein [Azoarcus sp. BH72] Length = 271 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 6/105 (5%) Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFE 123 LN YRG D TNVL+F + G ++ ++GD+VL ++ EA GK + Sbjct: 168 RALNLGYRGKDYATNVLTF--VYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAEQGKALD 225 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL++HG LHL G DH DD +A ME E +IL LG +PY Sbjct: 226 AHFAHLVVHGMLHLQGLDHEDDAEAEAMETAETNILRGLGYANPY 270 >gi|255066351|ref|ZP_05318206.1| putative metalloprotease [Neisseria sicca ATCC 29256] gi|255049561|gb|EET45025.1| putative metalloprotease [Neisseria sicca ATCC 29256] Length = 171 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 ++SL+ D N +YRG D TNVLSF D S + GD+++ +++ Sbjct: 51 ADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQFSDELCGDLIICPQVVL 110 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EA GK E H HL +HG LHL+GYDH+++ +A ME LE +++ G +PY+ D Sbjct: 111 KEAAEQGKTAEQHFAHLTMHGTLHLMGYDHIEETEAEEMEALEIRLMQAAGYPNPYQED 169 >gi|261211995|ref|ZP_05926281.1| predicted metal-dependent hydrolase [Vibrio sp. RC341] gi|260838603|gb|EEX65254.1| predicted metal-dependent hydrolase [Vibrio sp. RC341] Length = 78 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 48/69 (69%) Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD+V+ +++E EA K + H H+++HG LHLLGYDH++D +A ME LE I+ Sbjct: 5 LLGDLVICRQVVEHEAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIM 64 Query: 160 EDLGINDPY 168 +++G DPY Sbjct: 65 QEMGFTDPY 73 >gi|319778546|ref|YP_004129459.1| metal-dependent hydrolase [Taylorella equigenitalis MCE9] gi|317108570|gb|ADU91316.1| metal-dependent hydrolase [Taylorella equigenitalis MCE9] Length = 162 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY 108 FV+ + EL+L F LN YR + N+L+F + D ++ DI++ Sbjct: 46 FVEFDSAELNLRFVGPEEARNLNSVYRKKEYVPNILTFDYGVDALD----VLRADIIICK 101 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +I+ EA GK + H HL++HG LH G+DH+D++ A ME LE I++ G PY Sbjct: 102 DILLKEALDQGKSIKQHACHLVVHGVLHACGFDHMDEESAIEMESLEAEIVQSFGFPHPY 161 >gi|172056859|ref|YP_001813319.1| hypothetical protein Exig_0822 [Exiguobacterium sibiricum 255-15] gi|229890252|sp|B1YL70|RRMF_EXIS2 RecName: Full=Probable rRNA maturation factor gi|171989380|gb|ACB60302.1| protein of unknown function UPF0054 [Exiguobacterium sibiricum 255-15] Length = 158 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-------SSLMLGDIVLAY 108 ELS+ F + I+ +N E+RG D+ T+V+SF D ++LGD++++ Sbjct: 38 ELSVTFVTNDEIQQINREWRGKDQATDVISFAMDELGEDEIDFELLEDEPVVLGDLIISV 97 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E +A G FE L L +HGFLHLLGYDH++ D +M + IL Sbjct: 98 ERCREQAAEYGNHFERELGFLAVHGFLHLLGYDHIEKADEDIMTKRQEEIL 148 >gi|238854660|ref|ZP_04644990.1| putative metalloprotease [Lactobacillus jensenii 269-3] gi|260664397|ref|ZP_05865249.1| metal-dependent hydrolase [Lactobacillus jensenii SJ-7A-US] gi|282932949|ref|ZP_06338346.1| putative metalloprotease [Lactobacillus jensenii 208-1] gi|313472199|ref|ZP_07812691.1| putative metalloprotease [Lactobacillus jensenii 1153] gi|238832450|gb|EEQ24757.1| putative metalloprotease [Lactobacillus jensenii 269-3] gi|239529579|gb|EEQ68580.1| putative metalloprotease [Lactobacillus jensenii 1153] gi|260561462|gb|EEX27434.1| metal-dependent hydrolase [Lactobacillus jensenii SJ-7A-US] gi|281302984|gb|EFA95189.1| putative metalloprotease [Lactobacillus jensenii 208-1] Length = 174 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 9/131 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FAS--S 93 L++K KEN +E+S+ F D + +N +YR D+PT+V+SF AS S Sbjct: 31 LMAKKEIGKENNLEMSINFVDEDKSHQINRDYRDKDRPTDVISFAIEDGEEGVDLASFIS 90 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 D + +GD+ + +I+ A F+ + ++HGFLHL GYDH++ +A M G Sbjct: 91 DPDFTEDIGDLFMCISVIKRHAEEYETGFDREFGYTLVHGFLHLNGYDHIEPAEAKEMFG 150 Query: 154 LERSILEDLGI 164 ++ +LE+ G+ Sbjct: 151 IQGKVLEEYGL 161 >gi|33866843|ref|NP_898402.1| hypothetical protein SYNW2313 [Synechococcus sp. WH 8102] gi|46577382|sp|Q7U3W4|RRMF_SYNPX RecName: Full=Probable rRNA maturation factor gi|33639444|emb|CAE08828.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 185 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 13/150 (8%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 ++T+C A +L + + V L L FTD I LN +R ++ T+VLSF Sbjct: 35 IQTIC------ADPSLPCPALVCQADEVSLGLRFTDDATITALNSTWRQRNQATDVLSF- 87 Query: 88 TAFASSDG---CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 A + G S + LGDIV++ + +A+ G L L+ HG LHLLG+DH D Sbjct: 88 AALEEAPGLPDVSCVELGDIVISLDTARRQASEHGHNLTRELRWLVSHGLLHLLGWDHPD 147 Query: 145 DKDACVMEGLERSILE---DLGINDPYEVD 171 ++ M L+ +L+ ++ I DP+ VD Sbjct: 148 EESLVAMLQLQEQLLDGGSNVRIRDPHSVD 177 >gi|145558838|sp|A1K3J2|RRMF_AZOSB RecName: Full=Probable rRNA maturation factor gi|119669484|emb|CAL93397.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 252 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 6/105 (5%) Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFE 123 LN YRG D TNVL+F + G ++ ++GD+VL ++ EA GK + Sbjct: 149 RALNLGYRGKDYATNVLTF--VYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAEQGKALD 206 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL++HG LHL G DH DD +A ME E +IL LG +PY Sbjct: 207 AHFAHLVVHGMLHLQGLDHEDDAEAEAMETAETNILRGLGYANPY 251 >gi|227498625|ref|ZP_03928769.1| cytidine deaminase [Acidaminococcus sp. D21] gi|226904081|gb|EEH89999.1| cytidine deaminase [Acidaminococcus sp. D21] Length = 160 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 5/113 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-----MLGDIVLAYE 109 E+ + D I LN YRGID+PT+VLSF + +LGD++++ Sbjct: 39 TEVDITLVDDAAIHELNRTYRGIDRPTDVLSFALDEGEEEPEVDDDEIEHLLGDVIISAP 98 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + G E + +L +HG LHLLGYDH+++KD +M E +L L Sbjct: 99 TAVRQGEEYGHGLEREMTYLAVHGMLHLLGYDHMEEKDKLIMRKREEEVLRRL 151 >gi|71083090|ref|YP_265809.1| hypothetical protein SAR11_0385 [Candidatus Pelagibacter ubique HTCC1062] gi|123647146|sp|Q4FNN3|RRMF_PELUB RecName: Full=Probable rRNA maturation factor gi|71062203|gb|AAZ21206.1| Conserved hypothetical protein [Candidatus Pelagibacter ubique HTCC1062] Length = 153 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 5/141 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E LW +I F ++ K Y + L+++ +++ I+ L Sbjct: 2 IKIDVVSECTLWSKKIKRNK----TFFNSILKFFPKKYKFIGKKINLTILLSNNKNIKKL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R +KPT+VLSFP + S LGDIV++YE + N+ EF+ +V + Sbjct: 58 NKDFRNKNKPTDVLSFPFE-KKFNPKKSNYLGDIVISYEFMNKPKNISILEFKQKVVKIF 116 Query: 131 IHGFLHLLGYDHVDDKDACVM 151 IHGFLHLLG+DH+ KD M Sbjct: 117 IHGFLHLLGHDHIKLKDFKKM 137 >gi|91789935|ref|YP_550887.1| hypothetical protein Bpro_4096 [Polaromonas sp. JS666] gi|123164394|sp|Q124Q3|RRMF_POLSJ RecName: Full=Probable rRNA maturation factor gi|91699160|gb|ABE45989.1| protein of unknown function UPF0054 [Polaromonas sp. JS666] Length = 154 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D+ ++LN +YR D TNVL+F ++ D+VL ++E E Sbjct: 46 AEITVRIVDAEEGQSLNRDYRRKDYATNVLTFDYTR------EPVVTADLVLCAPVVERE 99 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A GK E H HL++H LH GYDH +++DA ME LE +L L +PY Sbjct: 100 AREQGKTLEAHYAHLLVHATLHAQGYDHETNERDALEMEALEILLLASLRFANPY 154 >gi|313892397|ref|ZP_07825989.1| translation metalloprotein YbeY [Dialister microaerophilus UPII 345-E] gi|329121359|ref|ZP_08249985.1| putative metalloprotease [Dialister micraerophilus DSM 19965] gi|313119256|gb|EFR42456.1| translation metalloprotein YbeY [Dialister microaerophilus UPII 345-E] gi|327469768|gb|EGF15234.1| putative metalloprotease [Dialister micraerophilus DSM 19965] Length = 169 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 9/116 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-----MLGDIVLAYE 109 EL ++ + RI LN +YRGID PT+VLSF A ++G + LGDI+L + Sbjct: 38 AELGVLICGAERIHELNRDYRGIDAPTDVLSF----ALNEGEDYIPEEEKALGDIILNID 93 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A++ G E + +L +HGFLH+LGYDH + ++ M E IL G+ Sbjct: 94 RAKEQAHMYGHSEEREMAYLSVHGFLHILGYDHYEAEEKKEMRKAEEDILGACGLQ 149 >gi|20807452|ref|NP_622623.1| putative metalloprotease [Thermoanaerobacter tengcongensis MB4] gi|26006913|sp|Q8RB52|RRMF_THETN RecName: Full=Probable rRNA maturation factor gi|20515977|gb|AAM24227.1| predicted metal-dependent hydrolase [Thermoanaerobacter tengcongensis MB4] Length = 158 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 9/114 (7%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---------LGDIVLAYEII 111 F D+ I LN YRGID T+VLSFP +GDIV++ E Sbjct: 44 FVDNEEIRKLNKYYRGIDSSTDVLSFPLMEFEEIEEGEEDEKDAEEIYPIGDIVISLEKA 103 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G FE + +L +H LHLLGYDH +++ +M E ++E LG+ Sbjct: 104 KEQAEEYGHSFEREVAYLTVHSMLHLLGYDHETEEERKLMREKEEKVMERLGLR 157 >gi|255291932|dbj|BAH90420.1| hypothetical protein [uncultured bacterium] Length = 155 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 9/123 (7%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106 G V+ + + +V D R LN ++R D TNVL+F + A L+ D+VL Sbjct: 39 GEQVQAAEITVRIVGDDEGR--QLNRDFRARDYATNVLTFDYSGAP------LVAADLVL 90 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGIN 165 ++ EA GK +H HL++HG LH G++H D+DA ME E ++L LG+ Sbjct: 91 CAPVVAREAAEQGKPLADHYAHLLVHGALHAQGWEHETSDEDAEAMEAHESAVLTGLGLP 150 Query: 166 DPY 168 DPY Sbjct: 151 DPY 153 >gi|126656865|ref|ZP_01728043.1| hypothetical protein CY0110_01764 [Cyanothece sp. CCY0110] gi|126621703|gb|EAZ92412.1| hypothetical protein CY0110_01764 [Cyanothece sp. CCY0110] Length = 172 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 7/116 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAY 108 EL+L T I++LN +YR ++PT+VL+F P + L +GDIV++ Sbjct: 57 ELTLRLTGDQEIQSLNAQYRHKNQPTDVLAFATLEENFPKITNQPEFLEPLYIGDIVISI 116 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E E +A G L L HGFLHLLG+DH D++ M + ++L+ +G+ Sbjct: 117 ETAEKQAQKEGHTLNRELPWLASHGFLHLLGWDHPDEQSLQKMLQQQETLLKIIGL 172 >gi|169829170|ref|YP_001699328.1| hypothetical protein Bsph_3714 [Lysinibacillus sphaericus C3-41] gi|238688186|sp|B1HTJ4|RRMF_LYSSC RecName: Full=Probable rRNA maturation factor gi|168993658|gb|ACA41198.1| UPF0054 protein [Lysinibacillus sphaericus C3-41] Length = 157 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 6/116 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLMLGDIVLAY 108 E+S+ F + I+ +N EYRG D+PT+V+SF A + +LGDI+++ Sbjct: 39 TEVSVTFVTNDTIQDINREYRGKDQPTDVISFALEELGEGEMAVTFEGMPRVLGDIIIST 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + +A FE L L +HGFLHLLGYDH++ ++ VM + IL+ G+ Sbjct: 99 DRAKEQAEEYNHSFERELGFLAVHGFLHLLGYDHMEPEEEKVMFTKQDEILQTFGL 154 >gi|218439664|ref|YP_002377993.1| hypothetical protein PCC7424_2713 [Cyanothece sp. PCC 7424] gi|218172392|gb|ACK71125.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 7424] Length = 180 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 8/116 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAY 108 ELSL TD I+ N +YR ++PT+VL+F P S L LGDI+++ Sbjct: 62 ELSLRLTDDQEIQFYNAQYRHKNQPTDVLAFAALEVDVPNLINESFD-EPLYLGDIIISI 120 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + +A G L L HGFLHLLG+DH DD+ M + ++L ++G+ Sbjct: 121 DTAKRQATEQGHSLTQELAWLAAHGFLHLLGWDHPDDESLSAMLAQQETLLNNIGL 176 >gi|23099408|ref|NP_692874.1| putative metalloprotease [Oceanobacillus iheyensis HTE831] gi|29428201|sp|Q8EPX8|RRMF_OCEIH RecName: Full=Probable rRNA maturation factor gi|22777637|dbj|BAC13909.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 154 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 6/116 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD------GCSSLMLGDIVLAY 108 ELS+ F D+ I+ LN YR D PT+V+SF ++ D L+LGDIV++ Sbjct: 37 AELSVNFVDNKEIQVLNRNYRQKDTPTDVISFAMQESNEDEMEIIGADGPLVLGDIVISV 96 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + ++ E L L +HGFLHLLGYDH+ ++D M + IL + G+ Sbjct: 97 DKAKEQSIEYDHSLERELGFLAVHGFLHLLGYDHMKEEDEKKMFSRQEEILGEFGV 152 >gi|323486952|ref|ZP_08092267.1| hypothetical protein HMPREF9474_04018 [Clostridium symbiosum WAL-14163] gi|323692000|ref|ZP_08106248.1| hypothetical protein HMPREF9475_01111 [Clostridium symbiosum WAL-14673] gi|323399724|gb|EGA92107.1| hypothetical protein HMPREF9474_04018 [Clostridium symbiosum WAL-14163] gi|323503923|gb|EGB19737.1| hypothetical protein HMPREF9475_01111 [Clostridium symbiosum WAL-14673] Length = 165 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 16/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSS--------- 98 E++++ TD+ I +N E+R ID PT+VLSFP + F + S Sbjct: 38 AEVNVILTDNAEIRRINREFRQIDSPTDVLSFPMGDFDVPSDFERMEEQSEDYFNPETGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDIV++ + +E +A G L L+ H LHL GYDH+++++ ME + I Sbjct: 98 LLLGDIVISVDKVEEQAEKYGHSQTRELAFLVAHSMLHLCGYDHMEEQERIAMEKRQEEI 157 Query: 159 LEDLG 163 L G Sbjct: 158 LSTGG 162 >gi|227544913|ref|ZP_03974962.1| metal-dependent hydrolase [Lactobacillus reuteri CF48-3A] gi|300910060|ref|ZP_07127520.1| probable metalloprotease [Lactobacillus reuteri SD2112] gi|227185125|gb|EEI65196.1| metal-dependent hydrolase [Lactobacillus reuteri CF48-3A] gi|300892708|gb|EFK86068.1| probable metalloprotease [Lactobacillus reuteri SD2112] Length = 160 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 12/121 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----------LGD 103 E+SL F ++ I+ LN +YR +D+ T+VLSF A + D +M LGD Sbjct: 39 TEMSLTFVNNPEIKKLNAQYRNVDRATDVLSF-AAEEAGDETPIIMDPQMAAEIPVNLGD 97 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + ++ + + +A LG + L L +HGFLHL GYDH + D M L+R IL+ G Sbjct: 98 LFISIDKVAEQAKFLGHSVDRELGFLAVHGFLHLNGYDHEEPADEEKMFKLQREILDGYG 157 Query: 164 I 164 + Sbjct: 158 L 158 >gi|255280944|ref|ZP_05345499.1| putative metalloprotease [Bryantella formatexigens DSM 14469] gi|255268392|gb|EET61597.1| putative metalloprotease [Bryantella formatexigens DSM 14469] Length = 167 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 16/127 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E+S+ TD I T+N E RGID T+VLSFP G Sbjct: 38 AEVSVTLTDDAEIRTINREQRGIDAATDVLSFPMVSYEIPGNFDFLEEEPADCFHPDSGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LMLGDIV++ + + +A G L+ H HL+GYDH+ +++A ME + + Sbjct: 98 LMLGDIVISVDHVYAQAEQYGHSLLREYAFLLAHSMFHLIGYDHMTEQEAAEMERKQEEV 157 Query: 159 LEDLGIN 165 LE L I Sbjct: 158 LERLNIT 164 >gi|241889939|ref|ZP_04777237.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] gi|241863561|gb|EER67945.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] Length = 157 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 7/118 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-------GDIVL 106 I E+SL F I+ +N +YRG D PT+V+SF D + L GD+++ Sbjct: 38 ITEMSLSFVSKEEIQEINRDYRGKDVPTDVISFALNDEVEDEIDIIGLEDEINSIGDVII 97 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +I +A F+ + L +HGFLHLLGYDH+ ++D M G + ILE G+ Sbjct: 98 CVDIAHEQAKEYEHSFDREIGFLAVHGFLHLLGYDHMTEEDEKEMFGKQDEILEKFGL 155 >gi|227364880|ref|ZP_03848926.1| metal-dependent hydrolase [Lactobacillus reuteri MM2-3] gi|325682495|ref|ZP_08162012.1| putative metalloprotease [Lactobacillus reuteri MM4-1A] gi|227070084|gb|EEI08461.1| metal-dependent hydrolase [Lactobacillus reuteri MM2-3] gi|324978334|gb|EGC15284.1| putative metalloprotease [Lactobacillus reuteri MM4-1A] Length = 160 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 12/121 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----------LGD 103 E+SL F ++ I+ LN +YR +D+ T+VLSF A + D +M LGD Sbjct: 39 TEMSLTFVNNPEIKKLNAQYRNVDRATDVLSF-AAEEAGDETPIIMDPEMAAEIPVNLGD 97 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + ++ + + +A LG + L L +HGFLHL GYDH + D M L+R IL+ G Sbjct: 98 LFISIDKVAEQAKFLGHSVDRELGFLAVHGFLHLNGYDHEEPADEEKMFKLQREILDGYG 157 Query: 164 I 164 + Sbjct: 158 L 158 >gi|108800421|ref|YP_640618.1| putative metalloprotease [Mycobacterium sp. MCS] gi|119869550|ref|YP_939502.1| putative metalloprotease [Mycobacterium sp. KMS] gi|126436044|ref|YP_001071735.1| putative metalloprotease [Mycobacterium sp. JLS] gi|122976747|sp|Q1B6C2|RRMF_MYCSS RecName: Full=Probable rRNA maturation factor gi|145558813|sp|A1UIQ4|RRMF_MYCSK RecName: Full=Probable rRNA maturation factor gi|166232596|sp|A3Q267|RRMF_MYCSJ RecName: Full=Probable rRNA maturation factor gi|108770840|gb|ABG09562.1| protein of unknown function UPF0054 [Mycobacterium sp. MCS] gi|119695639|gb|ABL92712.1| protein of unknown function UPF0054 [Mycobacterium sp. KMS] gi|126235844|gb|ABN99244.1| protein of unknown function UPF0054 [Mycobacterium sp. JLS] Length = 177 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 11/131 (8%) Query: 42 NLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG- 95 LIS FV E + ELS+V D+ + L+ + + PT+V+SFP G Sbjct: 17 ELISVARFVIEKMNVNPAAELSMVLLDTSSMADLHMRWMDLPGPTDVMSFPMDELEPGGR 76 Query: 96 -----CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 MLGDIVL E +A G + L L +HG LHLLGYDH + + Sbjct: 77 PDAPEPGPAMLGDIVLCPEFAAKQAETAGHSLGHELALLTVHGVLHLLGYDHAEPDEEKE 136 Query: 151 MEGLERSILED 161 M L+R +LE+ Sbjct: 137 MFALQRELLEE 147 >gi|126652812|ref|ZP_01724957.1| hypothetical protein BB14905_09040 [Bacillus sp. B14905] gi|126590348|gb|EAZ84468.1| hypothetical protein BB14905_09040 [Bacillus sp. B14905] Length = 157 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 11/123 (8%) Query: 52 ENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLML 101 ENI E+S+ F + I+ +N EYRG D+PT+V+SF + +G + L Sbjct: 33 ENIEPETEVSVTFVTNDTIQDINREYRGKDQPTDVISFALEELGEGEMTVTFEGMPRI-L 91 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI+++ + + +A FE L L +HGFLHLLGYDH++ ++ VM + IL+ Sbjct: 92 GDIIISTDRAKEQAEEYNHSFERELGFLAVHGFLHLLGYDHMEPEEEKVMFTKQDEILQT 151 Query: 162 LGI 164 G+ Sbjct: 152 FGL 154 >gi|148543967|ref|YP_001271337.1| hypothetical protein Lreu_0736 [Lactobacillus reuteri DSM 20016] gi|184153362|ref|YP_001841703.1| hypothetical protein LAR_0707 [Lactobacillus reuteri JCM 1112] gi|194467790|ref|ZP_03073776.1| protein of unknown function UPF0054 [Lactobacillus reuteri 100-23] gi|167016785|sp|A5VJH6|RRMF_LACRD RecName: Full=Probable rRNA maturation factor gi|229890246|sp|B2G6Z1|RRMF_LACRJ RecName: Full=Probable rRNA maturation factor gi|148531001|gb|ABQ83000.1| protein of unknown function UPF0054 [Lactobacillus reuteri DSM 20016] gi|183224706|dbj|BAG25223.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|194452643|gb|EDX41541.1| protein of unknown function UPF0054 [Lactobacillus reuteri 100-23] Length = 159 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 12/121 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----------LGD 103 E+SL F ++ I+ LN +YR +D+ T+VLSF A + D +M LGD Sbjct: 38 TEMSLTFVNNPEIKKLNAQYRNVDRATDVLSF-AAEEAGDETPIIMDPEMAAEIPVNLGD 96 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + ++ + + +A LG + L L +HGFLHL GYDH + D M L+R IL+ G Sbjct: 97 LFISIDKVAEQAKFLGHSVDRELGFLAVHGFLHLNGYDHEEPADEEKMFKLQREILDGYG 156 Query: 164 I 164 + Sbjct: 157 L 157 >gi|73540218|ref|YP_294738.1| putative metalloprotease [Ralstonia eutropha JMP134] gi|72117631|gb|AAZ59894.1| Protein of unknown function UPF0054 [Ralstonia eutropha JMP134] Length = 255 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L++ F D LN YRG D TNVL+F A+A S+ + GDIVL ++E EA Sbjct: 139 LTVRFVDEEEGRALNRSYRGKDYATNVLTF--AYAESE--DDPVTGDIVLCCPVVETEAR 194 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E H HLI+HG LH GY+H DD +A ME +E L+ LG DPY D Sbjct: 195 EQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIETETLQALGFEDPYRDD 249 >gi|326803484|ref|YP_004321302.1| translation metalloprotein YbeY [Aerococcus urinae ACS-120-V-Col10a] gi|326651189|gb|AEA01372.1| translation metalloprotein YbeY [Aerococcus urinae ACS-120-V-Col10a] Length = 158 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 10/119 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---------LGDIV 105 E+S I +N +YRG D+PT+V+SF S+G S + LGD++ Sbjct: 38 TEMSATIVHDDEIHAINRDYRGKDRPTDVISFAIN-DESEGDSPITEWPEDLPYELGDLI 96 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + + +A E L L HGFLHL GYDH++ +D VM GL+R IL+ G+ Sbjct: 97 ISLDTAKRQAEEYNHSLERELGFLACHGFLHLNGYDHIEPEDEKVMFGLQREILDAYGL 155 >gi|319651597|ref|ZP_08005724.1| hypothetical protein HMPREF1013_02336 [Bacillus sp. 2_A_57_CT2] gi|317396664|gb|EFV77375.1| hypothetical protein HMPREF1013_02336 [Bacillus sp. 2_A_57_CT2] Length = 156 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 6/115 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAYE 109 E+S+ F + RI +N EYR D+PT+V+SF + +LGDI+++ Sbjct: 40 EVSITFVTNERIREINREYRDKDRPTDVISFAMEELGEGEIELIGADMPRVLGDIIISVA 99 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A G F L L +HGFLHLLGYDH + +D M ++ IL++ G+ Sbjct: 100 KAKEQAEEYGHSFIRELGFLAVHGFLHLLGYDHENPEDEKKMFSRQKDILDEFGL 154 >gi|302869293|ref|YP_003837930.1| hypothetical protein Micau_4845 [Micromonospora aurantiaca ATCC 27029] gi|315504232|ref|YP_004083119.1| hypothetical protein ML5_3454 [Micromonospora sp. L5] gi|302572152|gb|ADL48354.1| protein of unknown function UPF0054 [Micromonospora aurantiaca ATCC 27029] gi|315410851|gb|ADU08968.1| protein of unknown function UPF0054 [Micromonospora sp. L5] Length = 157 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDI 104 + ELS++ D + LN + G D PT+VL+FP S D G +LGDI Sbjct: 34 LAELSVLLVDIEYMSELNHRWMGGDGPTDVLAFPMDEGSVDHGPGESNPAGGEPALLGDI 93 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 VL E+ +A V G + L L +HG LHLLGYDH + ++ M GL+ +L Sbjct: 94 VLCPEVAAKQAAVAGHSAADELHLLTVHGVLHLLGYDHAEPEEEREMFGLQARLL 148 >gi|28211644|ref|NP_782588.1| putative metalloprotease [Clostridium tetani E88] gi|46577461|sp|Q892R9|RRMF_CLOTE RecName: Full=Probable rRNA maturation factor gi|28204086|gb|AAO36525.1| metal-binding protein [Clostridium tetani E88] Length = 167 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSS---------- 98 E+S+++ D+ I+ +N + RGI+K T+VLSFP F+ S S Sbjct: 39 EISVIYVDNEIIKEINNDTRGINKETDVLSFPMLEYPKGRVFSESYREYSFGVEYLNEGN 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDIVL+ E ++ F + +L++H LHLLGYDH+D+++ +M E I Sbjct: 99 LVLGDIVLSLEKALEQSKEYNHSFLREVCYLVVHSVLHLLGYDHIDEEEKVIMRKKEEEI 158 Query: 159 LEDLGIN 165 LE I+ Sbjct: 159 LESFNIS 165 >gi|83944997|ref|ZP_00957363.1| hypothetical protein OA2633_10219 [Oceanicaulis alexandrii HTCC2633] gi|83851779|gb|EAP89634.1| hypothetical protein OA2633_10219 [Oceanicaulis alexandrii HTCC2633] Length = 158 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 6/110 (5%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++F+D + LN +R DK TNVLSFP +G GD++LAYE EA Sbjct: 51 ILFSDDATVHELNRRFRDKDKSTNVLSFPAP--EREGYP----GDVILAYETCAKEAQAA 104 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H HL +HG LHL G+DH ++ +A ME LE ++L LGI DPY Sbjct: 105 AISLIDHAAHLALHGVLHLNGFDHQEEDEAAAMEALETAVLTGLGIQDPY 154 >gi|159899181|ref|YP_001545428.1| hypothetical protein Haur_2662 [Herpetosiphon aurantiacus ATCC 23779] gi|159892220|gb|ABX05300.1| protein of unknown function UPF0054 [Herpetosiphon aurantiacus ATCC 23779] Length = 174 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 24/154 (15%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--- 86 +L E V A+ +++ G + E+ + T+ + LN +YRG+D+PT+VLSF Sbjct: 20 SLLEQVVAQVLADEGQTGTW------EIGIRITNDQELHELNRQYRGVDRPTDVLSFGEY 73 Query: 87 ---------PTA------FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 P F + + LGD+ ++YE + +A L +L+ Sbjct: 74 EDDDDDFIVPDGVYDDDEFDDPEADEAAYLGDLAISYERVLAQAQEYAHSSRRELCYLVA 133 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HG LHLLGYDH D++ M E L LGI Sbjct: 134 HGTLHLLGYDHETDEEREDMRQREEKALSTLGIT 167 >gi|260662172|ref|ZP_05863068.1| metal-dependent hydrolase [Lactobacillus fermentum 28-3-CHN] gi|260553555|gb|EEX26447.1| metal-dependent hydrolase [Lactobacillus fermentum 28-3-CHN] Length = 157 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 18/145 (12%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L E V A+A L V E E+SL F + I LN +YRGID+ T+V+SF A Sbjct: 20 LAEKVLAQAAERLD-----VPEQ-AEMSLTFVLNPEIRELNRDYRGIDRATDVISF--AI 71 Query: 91 ASSDGCSSLM----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 D ++L LGD+V++ + + +A L + L +L++HGFLHL GY Sbjct: 72 EDDDDLANLPAEIRAELPVELGDLVISIDKVTEQALFLNHSADRELGYLLVHGFLHLNGY 131 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH + D M L+ IL+ LG++ Sbjct: 132 DHEEPADEEKMFTLQEEILDGLGLS 156 >gi|304403958|ref|ZP_07385620.1| protein of unknown function UPF0054 [Paenibacillus curdlanolyticus YK9] gi|304346936|gb|EFM12768.1| protein of unknown function UPF0054 [Paenibacillus curdlanolyticus YK9] Length = 165 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 14/123 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLML 101 ++SL F D I LN ++R ID+PT+VLSF D S ML Sbjct: 41 DVSLTFVDDEEIHRLNRDFRHIDRPTDVLSFAMQEDGEDEPEIVFEVESEDEPDPFSGML 100 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI+++ E ++ G E + L +HGFLHL+GYDH D + M + ++L+ Sbjct: 101 GDIIISTERALAQSEEYGHSLEREIGFLFVHGFLHLIGYDHEDAEGEAEMTAKQEAVLQK 160 Query: 162 LGI 164 G+ Sbjct: 161 AGL 163 >gi|241895553|ref|ZP_04782849.1| metal-dependent hydrolase [Weissella paramesenteroides ATCC 33313] gi|241871131|gb|EER74882.1| metal-dependent hydrolase [Weissella paramesenteroides ATCC 33313] Length = 160 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 20/147 (13%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 +V V N K + EN E+S+ F ++ I+ N EYRG+DK T+V+SF A Sbjct: 17 QVKLVNDVLNYAGKYLSLPEN-TEMSVTFVNNDEIQRYNREYRGLDKATDVISF----AI 71 Query: 93 SDGCSSLML--------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 D L L GDI+++ + I +A L +E L L++HGFLHL Sbjct: 72 EDDGDDLPLLIDDEMADDIAKNIGDIIVSVDKIGEQAEYLEHSYERELGFLVVHGFLHLN 131 Query: 139 GYDHV-DDKDACVMEGLERSILEDLGI 164 GYDH+ + D +M L+R IL+ G+ Sbjct: 132 GYDHMRSEADEKIMFDLQREILDSYGL 158 >gi|145558832|sp|Q475N9|RRMF_CUPPJ RecName: Full=Probable rRNA maturation factor Length = 201 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L++ F D LN YRG D TNVL+F A+A S+ + GDIVL ++E EA Sbjct: 85 LTVRFVDEEEGRALNRSYRGKDYATNVLTF--AYAESE--DDPVTGDIVLCCPVVETEAR 140 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E H HLI+HG LH GY+H DD +A ME +E L+ LG DPY D Sbjct: 141 EQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIETETLQALGFEDPYRDD 195 >gi|254519867|ref|ZP_05131923.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226913616|gb|EEH98817.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 166 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 23/129 (17%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------------------TAFASSDG 95 ++SL+F D+ I +N E R ID+ T+VLSFP F D Sbjct: 39 QISLLFVDNEEIREINNETRNIDRATDVLSFPMLDFEDKKVFNEMYLNYDFDETFKDGD- 97 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 L+LGD+VL+ E ++ G +E + +L++H LHLLGYDH+++ D M E Sbjct: 98 --ELILGDMVLSLERALEQSEEYGHSYEREVSYLVVHSILHLLGYDHMEEDDKKRMRKRE 155 Query: 156 RSILEDLGI 164 IL L I Sbjct: 156 EEILNKLQI 164 >gi|111018251|ref|YP_701223.1| putative metalloprotease [Rhodococcus jostii RHA1] gi|123145313|sp|Q0SHC1|RRMF_RHOSR RecName: Full=Probable rRNA maturation factor gi|110817781|gb|ABG93065.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 180 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 11/131 (8%) Query: 42 NLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AF 90 LIS FV + ELS+V DS + L+ + + PT+V+SFP Sbjct: 17 ELISVARFVIARMDVHPAAELSMVLVDSATMADLHMRWMDLPGPTDVMSFPMDELEPGGR 76 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 S MLGDIVL +A+ G + L L +HG LHLLGYDH + ++ Sbjct: 77 PDSPEPGPSMLGDIVLCPSFASDQADKAGHPLAHELALLTVHGVLHLLGYDHAEPEEEKE 136 Query: 151 MEGLERSILED 161 M GL+ +LED Sbjct: 137 MFGLQNQLLED 147 >gi|85057391|ref|YP_456307.1| metal-dependent hydrolase [Aster yellows witches'-broom phytoplasma AYWB] gi|123518441|sp|Q2NK15|RRMF_AYWBP RecName: Full=Probable rRNA maturation factor gi|84789496|gb|ABC65228.1| predicted metal-dependent hydrolase [Aster yellows witches'-broom phytoplasma AYWB] Length = 146 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 38 KAVSNLISKGYF-VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K +L+ K + +KE + + L+F + +I+ LN YR + PT+VLSF G Sbjct: 14 KPFKSLLIKMFLPIKEKKI-MHLIFVTNEKIQELNSFYRQKNYPTDVLSFHNDLTFFAGL 72 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LGD+ +++ + +A E + L +HGFLHL GY H +++ +M L+ Sbjct: 73 EDNSLGDVFISFPKAQEQAKTFKHSLEREIAFLAVHGFLHLKGYQHRTEEEFQIMLALQE 132 Query: 157 SILEDLGIN 165 IL+ +G+N Sbjct: 133 KILQKVGLN 141 >gi|223044370|ref|ZP_03614404.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|314933742|ref|ZP_07841107.1| putative metalloprotease [Staphylococcus caprae C87] gi|222442239|gb|EEE48350.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|313653892|gb|EFS17649.1| putative metalloprotease [Staphylococcus caprae C87] Length = 156 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 13/136 (9%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + FAK ++ S+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 25 LTFAKKQEHIDSEA--------ELSVTFVDKDEIQNINKMYRDKDKVTDVISFALEEDEP 76 Query: 94 D-GCSSL----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + + L +LGDI++ ++ +A G FE L L +HGFLHLLGYDH+ D+D Sbjct: 77 EIDMNELDIPRVLGDIIICTDVAHEQAENYGHSFERELGFLALHGFLHLLGYDHMTDEDE 136 Query: 149 CVMEGLERSILEDLGI 164 M G + +IL G+ Sbjct: 137 KEMFGRQDAILNAYGL 152 >gi|295398010|ref|ZP_06808066.1| metal-dependent hydrolase [Aerococcus viridans ATCC 11563] gi|294973768|gb|EFG49539.1| metal-dependent hydrolase [Aerococcus viridans ATCC 11563] Length = 158 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 8/129 (6%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---- 99 + GY ++LSL + I +N YR ID+PT+V+SF D + + Sbjct: 27 FAAGYLKLTGEIDLSLTIVNDAEIHEINKTYRNIDRPTDVISFAIEDLGEDELAVMGLPE 86 Query: 100 ----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LGD+ ++ + +A G FE L L +HGFLHL GYDH+++ D M GL+ Sbjct: 87 DMPRELGDLFISIDKAREQAADYGHSFERELGFLAVHGFLHLNGYDHMNEVDEKEMFGLQ 146 Query: 156 RSILEDLGI 164 + IL+ G+ Sbjct: 147 KEILDAYGL 155 >gi|150390781|ref|YP_001320830.1| hypothetical protein Amet_3031 [Alkaliphilus metalliredigens QYMF] gi|172052485|sp|A6TSK3|RRMF_ALKMQ RecName: Full=Probable rRNA maturation factor gi|149950643|gb|ABR49171.1| protein of unknown function UPF0054 [Alkaliphilus metalliredigens QYMF] Length = 155 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 4/112 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIE 112 E+SL F + I+ LN YRG D T+VLSFP +DG +LGD+V++ E Sbjct: 42 EVSLSFVSNKEIQNLNRTYRGKDYATDVLSFPLV-DDTDGFPMGEEKLLGDVVISVEKAV 100 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A FE + L++H HL+GYDH+++ +A M E +L ++G+ Sbjct: 101 EQAKEYQHSFEREMGFLMVHSLFHLMGYDHLEETEAQEMRKREEIVLTEMGL 152 >gi|90961874|ref|YP_535790.1| hypothetical protein LSL_0897 [Lactobacillus salivarius UCC118] gi|122449026|sp|Q1WTU0|RRMF_LACS1 RecName: Full=Probable rRNA maturation factor gi|90821068|gb|ABD99707.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118] Length = 159 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----------LGD 103 E+S+ ++ +I +N +YRG+DK T+V+SF D ++ +GD Sbjct: 37 TEMSVTLMNNEQIHEINLKYRGVDKATDVISFAIEEDDPDELPIILPDDVDFEEPKNIGD 96 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++++ + ++ +A LG + L L +HGFLHL GYDH+ +D VM L+R IL+ G Sbjct: 97 MMISMDKVKEQAEYLGHSEDRELGFLTVHGFLHLNGYDHMKAEDEKVMFKLQRDILDAYG 156 Query: 164 IN 165 + Sbjct: 157 LK 158 >gi|296273646|ref|YP_003656277.1| hypothetical protein Arnit_2116 [Arcobacter nitrofigilis DSM 7299] gi|296097820|gb|ADG93770.1| protein of unknown function UPF0054 [Arcobacter nitrofigilis DSM 7299] Length = 139 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 6/92 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +EL LV+ D I+TLN E+R IDK T+VLSFP + ++ LG IV++ + +E + Sbjct: 29 IELILVYND--EIQTLNKEHRNIDKATDVLSFPLEY----DMPNMPLGSIVISVDFVEDK 82 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A F + L L IHG LHLLGYDH DK Sbjct: 83 AKEYNHSFLDELTLLFIHGMLHLLGYDHEVDK 114 >gi|28378612|ref|NP_785504.1| hypothetical protein lp_1969 [Lactobacillus plantarum WCFS1] gi|254556827|ref|YP_003063244.1| hypothetical protein JDM1_1660 [Lactobacillus plantarum JDM1] gi|300768140|ref|ZP_07078045.1| metal-dependent hydrolase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180768|ref|YP_003924896.1| hypothetical protein LPST_C1586 [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258751|sp|Q88VR8|RRMF_LACPL RecName: Full=Probable rRNA maturation factor gi|28271448|emb|CAD64353.1| unknown [Lactobacillus plantarum WCFS1] gi|254045754|gb|ACT62547.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|300494204|gb|EFK29367.1| metal-dependent hydrolase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046259|gb|ADN98802.1| hypothetical protein LPST_C1586 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 159 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 10/120 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC----------SSLMLGDI 104 E+S+ ++ I+ +N +YRG+D+PT+V+SF D L LGDI Sbjct: 38 TEVSVTLMNNDAIQKINEQYRGVDRPTDVISFAMHDDDEDDLIVMDPEMAAEMPLNLGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ + + +A L L +L++HGFLHL GYDH+ D M L+R IL+ G+ Sbjct: 98 MISVDKVSEQAAFLNHSEARELGYLVVHGFLHLNGYDHLQPADETEMFTLQRQILDAYGL 157 >gi|301300991|ref|ZP_07207154.1| translation metalloprotein YbeY [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851407|gb|EFK79128.1| translation metalloprotein YbeY [Lactobacillus salivarius ACS-116-V-Col5a] Length = 159 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----------LGD 103 E+S+ ++ +I +N +YRG+DK T+V+SF D ++ +GD Sbjct: 37 TEMSVTLMNNEQIHEINLKYRGVDKATDVISFAIEEDDPDELPIILPDYVDFEEPKNIGD 96 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++++ + ++ +A LG + L L +HGFLHL GYDH+ +D VM L+R IL+ G Sbjct: 97 MMISMDKVKEQAEYLGHSEDRELGFLTVHGFLHLNGYDHMKAEDEKVMFKLQRDILDAYG 156 Query: 164 IN 165 + Sbjct: 157 LK 158 >gi|291302084|ref|YP_003513362.1| hypothetical protein Snas_4626 [Stackebrandtia nassauensis DSM 44728] gi|290571304|gb|ADD44269.1| protein of unknown function UPF0054 [Stackebrandtia nassauensis DSM 44728] Length = 156 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 15/146 (10%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 G E+ ++C+V A L G + +LS++ D + LN + G PT+ Sbjct: 10 GAEVGTESICDV----ARHALSEMGVH---PLADLSILVVDETYMSELNHRWMGAAGPTD 62 Query: 83 VLSFPTAFAS--------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 VL+FP S S+ + +LGD+VL E+ E +A G + L L +HG Sbjct: 63 VLAFPMDELSVGRGPSNDSEPAAETLLGDVVLCPEVAERQAAKAGHSTADELHMLTVHGV 122 Query: 135 LHLLGYDHVDDKDACVMEGLERSILE 160 LH+LGYDH + +A M GL++S+L+ Sbjct: 123 LHILGYDHAEPDEAKQMFGLQQSLLD 148 >gi|237738285|ref|ZP_04568766.1| metal-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229420165|gb|EEO35212.1| metal-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 155 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 2/125 (1%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-DGCSS 98 V ++ K Y E V +SL+FT + I+ +N EYR D+PT+V+SF D Sbjct: 27 VQKVLEKEY-ESEAPVYMSLLFTGNDEIQVINREYRDKDQPTDVISFAYHETEDFDIGPY 85 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDIV++ E + +A + L +++ HG LHLLGYDH++++D M E I Sbjct: 86 DTLGDIVISLERVVEQAKEYNHSDKRELFYVLTHGILHLLGYDHIEEEDKKEMRAKEEEI 145 Query: 159 LEDLG 163 L G Sbjct: 146 LGSFG 150 >gi|301064609|ref|ZP_07205005.1| translation metalloprotein YbeY [delta proteobacterium NaphS2] gi|300441357|gb|EFK05726.1| translation metalloprotein YbeY [delta proteobacterium NaphS2] Length = 128 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 5/92 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGC---SSLMLGDIVLAYEI 110 ELS++FTD + LN +YR + T+VLSF A DG ++MLGD+V++ + Sbjct: 16 ELSILFTDDENMAVLNRQYRQKEGATDVLSFSMQEALDGEDGTPLFETVMLGDVVISVDT 75 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +A LG+ FE + L+IHG LHL GYDH Sbjct: 76 ALRDAKELGESFEKTVDRLLIHGILHLTGYDH 107 >gi|262037729|ref|ZP_06011171.1| putative metalloprotease [Leptotrichia goodfellowii F0264] gi|261748201|gb|EEY35598.1| putative metalloprotease [Leptotrichia goodfellowii F0264] Length = 154 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 3/113 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEI 110 EN LSL+ D+ I +N EYR D T+V+SF A+ ++ + +LGDI+++ E Sbjct: 40 ENDYYLSLLIADNKIIRKINKEYRNKDLETDVISF--AYNETENIGGMNVLGDIIISLER 97 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++ +A G E +++ HG LHLLGYDH++++D VM E IL+ Sbjct: 98 VKSQAEDYGHSEEREFYYVLCHGMLHLLGYDHIEEEDKKVMREKEEKILKQFN 150 >gi|284990192|ref|YP_003408746.1| hypothetical protein Gobs_1659 [Geodermatophilus obscurus DSM 43160] gi|284063437|gb|ADB74375.1| protein of unknown function UPF0054 [Geodermatophilus obscurus DSM 43160] Length = 167 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DE L +C V A+ N + ELS++ D+ + TL Sbjct: 1 MPVEVANESEIAVDESSLAAICTYVLAEMGVN----------PMAELSVLCVDADYMSTL 50 Query: 71 NFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + + G PT+VL+FP T +LGD+VL + +A G ++ Sbjct: 51 HERWMGEKGPTDVLAFPMDELDTGRPDEPDPGPALLGDVVLCPSVAIRQARAAGHTMDDE 110 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L+ L HG LHLLGYDH++ + M GL+ +L+ Sbjct: 111 LILLATHGVLHLLGYDHMEPDEEKEMFGLQSKLLD 145 >gi|325569846|ref|ZP_08145840.1| metal-dependent hydrolase [Enterococcus casseliflavus ATCC 12755] gi|325156969|gb|EGC69137.1| metal-dependent hydrolase [Enterococcus casseliflavus ATCC 12755] Length = 158 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLS----------FPTAFASSDGCSSLMLGDI 104 E+S+ F D+ I+ +N EYRG D PT+V+S P F + LGDI Sbjct: 37 TEMSVTFMDNAAIQEINREYRGKDMPTDVISFAFEEETAEEMPIIFDEALEEMPRDLGDI 96 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E + +A G ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 97 MISIERAKEQAAEYGHTYDRELGFLALHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGL 156 Query: 165 N 165 Sbjct: 157 K 157 >gi|167772060|ref|ZP_02444113.1| hypothetical protein ANACOL_03434 [Anaerotruncus colihominis DSM 17241] gi|167665858|gb|EDS09988.1| hypothetical protein ANACOL_03434 [Anaerotruncus colihominis DSM 17241] Length = 170 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%) Query: 49 FVKENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----FASSDGCSSLML 101 V EN E+S+ F ++ +I LN EYR D PT+VLSFP + + +L L Sbjct: 34 LVAENFHESAEISVSFVNNEQIRQLNAEYRQKDAPTDVLSFPLGSGGKYDRNMETGALQL 93 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILE 160 GDIV++ E +A + G + + L +H LHLLGYDH + M E S+L Sbjct: 94 GDIVISVEKAVEQARMYGHSLQREIGFLTVHSMLHLLGYDHEAGGLEMVRMREKEESVLA 153 Query: 161 DLGI 164 LG+ Sbjct: 154 SLGL 157 >gi|162447804|ref|YP_001620936.1| hypothetical protein ACL_0950 [Acholeplasma laidlawii PG-8A] gi|189040645|sp|A9NGT0|RRMF_ACHLI RecName: Full=Probable rRNA maturation factor gi|161985911|gb|ABX81560.1| conserved hypothetical protein [Acholeplasma laidlawii PG-8A] Length = 137 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 5/103 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + ++F D+ +I +N YR IDKPT+V+SFP D LGDI ++ + +I+A Sbjct: 33 MQVIFVDNDQIRDINKMYRNIDKPTDVISFPNDDEKDDS-----LGDIFISIDQAKIQAL 87 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 G E + L +HG+LHLLGYDH + + M L+ IL Sbjct: 88 DYGHTLEREIGFLAVHGYLHLLGYDHHTEAEEKEMFTLQEEIL 130 >gi|294501289|ref|YP_003564989.1| hypothetical protein BMQ_4551 [Bacillus megaterium QM B1551] gi|294351226|gb|ADE71555.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 156 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 7/122 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGD 103 ++EN E+S+ F D+ RI+ +N +YR ++PT+V+SF D + +LGD Sbjct: 35 LQEN-AEVSVTFVDNDRIQEINHQYRHKNQPTDVISFALEEMGEDEMQIIGDELPRVLGD 93 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 IV++ +A F L L +HGFLHLLGYDH +D M ++ ILE G Sbjct: 94 IVISIPKAHEQAEEYNHSFMRELGFLTVHGFLHLLGYDHETSEDEKEMFTRQKDILEQYG 153 Query: 164 IN 165 ++ Sbjct: 154 LS 155 >gi|168187766|ref|ZP_02622401.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] gi|169294380|gb|EDS76513.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] Length = 166 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 17/128 (13%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AF-ASSDGCS 97 E+S+V D++ I+ +N + R IDK T+VLSFP F AS Sbjct: 38 TEVSVVLIDNNTIKEINKQTRDIDKVTDVLSFPMLDYPKGETYKEVYKDYEFDASYLDEG 97 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 L+LGDIVL+ E E + G F + +L IH LHLLGYDH++D + +M E Sbjct: 98 ELVLGDIVLSLERAEEQRKEFGHSFLREVCYLTIHSVLHLLGYDHMEDDEKIIMRKREEE 157 Query: 158 ILEDLGIN 165 IL I Sbjct: 158 ILNKFSIK 165 >gi|320538438|ref|ZP_08038305.1| conserved hypothetical protein TIGR00043 [Treponema phagedenis F0421] gi|320144700|gb|EFW36449.1| conserved hypothetical protein TIGR00043 [Treponema phagedenis F0421] Length = 156 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 2/106 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEI 113 +LS+VF + I TLN YR ID PT+VLSF + + DG + ++ GDI+++ + ++ Sbjct: 41 DLSVVFCNDEFIHTLNKTYRHIDSPTDVLSFENGEKYFNEDGEARILAGDIIISLDSVKA 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A + L L+IHG LHL G DH D+ M L+ IL Sbjct: 101 NAYAFHVSIDEELRRLLIHGVLHLFGMDHTDNSPEQEMLQLQEKIL 146 >gi|259046833|ref|ZP_05737234.1| metalloprotease [Granulicatella adiacens ATCC 49175] gi|259036456|gb|EEW37711.1| metalloprotease [Granulicatella adiacens ATCC 49175] Length = 169 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 11/121 (9%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----------TAFASSDGCSSLMLGDI 104 E S+ F S RI +N ++R IDK T+V+SF + D +GDI Sbjct: 45 ECSISFVSSERIREINRDFRNIDKVTDVISFALDDDDDDLASMQSIMEEDDSFVTSIGDI 104 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 V++ + + +A G E L L +HGFLHL GYDH +++ M GL++ ILE G+ Sbjct: 105 VISLDRAKEQAEDYGHSLERELGFLALHGFLHLNGYDHQTEEEEAEMTGLQQEILEAYGL 164 Query: 165 N 165 Sbjct: 165 T 165 >gi|22299128|ref|NP_682375.1| putative metalloprotease [Thermosynechococcus elongatus BP-1] gi|29428189|sp|Q8DIK0|RRMF_THEEB RecName: Full=Probable rRNA maturation factor gi|22295310|dbj|BAC09137.1| tlr1585 [Thermosynechococcus elongatus BP-1] Length = 160 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGD 103 + + EL+L T I+ LN +YR D PT+VL AFA+ DG L LGD Sbjct: 37 TQGKVYELTLRLTTDAAIQALNQQYRDRDTPTDVL----AFATRDGALPLPLGEPEYLGD 92 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I+++ + +A G + L HG LHLLG+DH D+ + M + LE +G Sbjct: 93 IIISGDTARRQAAESGHTLSIEIAWLACHGLLHLLGWDHPDEAELARMLTQQAQCLEAVG 152 Query: 164 INDP 167 + P Sbjct: 153 LTPP 156 >gi|81428486|ref|YP_395486.1| hypothetical protein LSA0876 [Lactobacillus sakei subsp. sakei 23K] gi|123564327|sp|Q38XA4|RRMF_LACSS RecName: Full=Probable rRNA maturation factor gi|78610128|emb|CAI55177.1| Hypothetical protein LCA_0876 [Lactobacillus sakei subsp. sakei 23K] Length = 158 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-----PTAFASSDGCSSLM-----LGDI 104 E+S+ F + RI +N EYR D+ T+V+SF P L +GD+ Sbjct: 37 TEMSVTFVTNERIRQINQEYRNTDRATDVISFAIEEDPEEEGLPANFEELFDIPKNIGDL 96 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ E +A G FE L + ++HGFLHL GYDH+ +D M L+ +IL++ G+ Sbjct: 97 FVSLEKAAEQAETYGHSFERELGYTMVHGFLHLNGYDHIHTEDEVKMIPLQETILDEFGL 156 Query: 165 N 165 Sbjct: 157 K 157 >gi|302380695|ref|ZP_07269160.1| translation metalloprotein YbeY [Finegoldia magna ACS-171-V-Col3] gi|303233630|ref|ZP_07320284.1| translation metalloprotein YbeY [Finegoldia magna BVS033A4] gi|302311638|gb|EFK93654.1| translation metalloprotein YbeY [Finegoldia magna ACS-171-V-Col3] gi|302495064|gb|EFL54816.1| translation metalloprotein YbeY [Finegoldia magna BVS033A4] Length = 153 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 2/109 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+SL F I LN +YR D T+VLSFP + +LGDI++ + +A Sbjct: 40 EISLSFVSEAEIRKLNRDYRDKDSVTDVLSFP--LDDDFAIQTNLLGDIIICCKRAIEQA 97 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +V+L++H HLLGYDH+D+ D +M E+ L+++GI Sbjct: 98 KEYNHSIKREIVYLVVHSMFHLLGYDHIDESDRIIMRNKEKLALKEIGI 146 >gi|299535808|ref|ZP_07049129.1| hypothetical protein BFZC1_07283 [Lysinibacillus fusiformis ZC1] gi|298729008|gb|EFI69562.1| hypothetical protein BFZC1_07283 [Lysinibacillus fusiformis ZC1] Length = 157 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 9/122 (7%) Query: 52 ENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLG 102 ENI E+S+ F + I+ +N EYRG D+PT+V+SF + +LG Sbjct: 33 ENIEPETEVSVTFVTNKAIQDINREYRGKDQPTDVISFALEELGQGEMEVIFEGMPRVLG 92 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI+++ + + +A FE L L +HGFLHLLGYDH+ ++ VM + IL+ Sbjct: 93 DIIISTDRAKEQAEEYNHSFERELGFLAVHGFLHLLGYDHMKPEEEKVMFAKQDEILQTY 152 Query: 163 GI 164 G+ Sbjct: 153 GL 154 >gi|331701378|ref|YP_004398337.1| metalloprotease ybeY [Lactobacillus buchneri NRRL B-30929] gi|329128721|gb|AEB73274.1| metalloprotease ybeY [Lactobacillus buchneri NRRL B-30929] Length = 161 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 12/123 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML------------G 102 E+S+ ++ I +N +YRG+D+ T+V+SF D +++ G Sbjct: 38 TEMSMTLVNNDEIHQINKKYRGVDRATDVISFAIEDDDDDDDFPIVMDEELKESIPENIG 97 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI ++ + + +A+ LG FE L L +HGFLHL GYDH+ DA VM L++ IL Sbjct: 98 DIFVSVDKVAEQADYLGHSFERELGFLCVHGFLHLNGYDHMKKADADVMFPLQKEILNAY 157 Query: 163 GIN 165 G+ Sbjct: 158 GLK 160 >gi|295706636|ref|YP_003599711.1| hypothetical protein BMD_4537 [Bacillus megaterium DSM 319] gi|294804295|gb|ADF41361.1| conserved hypothetical protein [Bacillus megaterium DSM 319] Length = 156 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAY 108 E+S+ F D+ RI+ +N +YR ++PT+V+SF D + +LGDIV++ Sbjct: 39 AEVSVTFVDNDRIQEINHQYRHKNQPTDVISFALEEMGEDEMQIIGDEMPRVLGDIVISI 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A F L L +HGFLHLLGYDH +D M ++ ILE G++ Sbjct: 99 PKAHEQAEEYNHSFMRELGFLTVHGFLHLLGYDHETSEDEKEMFTRQKDILEQYGLS 155 >gi|229829053|ref|ZP_04455122.1| hypothetical protein GCWU000342_01138 [Shuttleworthia satelles DSM 14600] gi|229792216|gb|EEP28330.1| hypothetical protein GCWU000342_01138 [Shuttleworthia satelles DSM 14600] Length = 164 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 15/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---------------CSSL 99 E+S+ D R+ +N EYR ID+PT+VLSFP + G Sbjct: 38 AEVSVTLVDLDRMHQINREYRQIDRPTDVLSFPFIDYPAPGDFSEIEKTDDFFNPDSGEA 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDIVL + +A G LI H LHL+GYDH+ D + ME + +L Sbjct: 98 VLGDIVLCIPRLVSQAQDYGHSTRREFAFLIAHSMLHLMGYDHMTDAERIDMERRQSEML 157 Query: 160 EDLGI 164 + LGI Sbjct: 158 DQLGI 162 >gi|158320283|ref|YP_001512790.1| hypothetical protein Clos_1248 [Alkaliphilus oremlandii OhILAs] gi|166977843|sp|A8MG66|RRMF_ALKOO RecName: Full=Probable rRNA maturation factor gi|158140482|gb|ABW18794.1| protein of unknown function UPF0054 [Alkaliphilus oremlandii OhILAs] Length = 151 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 6/132 (4%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L E++ + LI +G+ + E+SL F D+ I+ LN YRG D T+VLSFP Sbjct: 17 ALIELINKAVEACLIYEGWEID---YEVSLSFVDNQEIQALNHTYRGKDYATDVLSFPL- 72 Query: 90 FASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + G +LGDIV++ E +A FE + L++H HL+GYDH D+ Sbjct: 73 IEENQGLDLEEKLLGDIVISVEKAAEQAKEYNHSFEREMGFLVVHSMFHLMGYDHDHDEA 132 Query: 148 ACVMEGLERSIL 159 M E ++L Sbjct: 133 TADMRKREEAVL 144 >gi|332296322|ref|YP_004438245.1| metalloprotease ybeY [Thermodesulfobium narugense DSM 14796] gi|332179425|gb|AEE15114.1| metalloprotease ybeY [Thermodesulfobium narugense DSM 14796] Length = 149 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 65/116 (56%), Gaps = 18/116 (15%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEII--- 111 ELSL+ TD++ I LN E+R D PT+VLSF +G +L +LGDIV++ E Sbjct: 35 ELSLLLTDNNEIRILNKEFRKSDCPTDVLSF-------EGDMNLGVLGDIVISVERARED 87 Query: 112 -------EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 EI V K FE++L+ L+IHG LH LG+DH DD M ER LE Sbjct: 88 FVSGSYGEIIPEVAKKNFESYLLWLVIHGILHNLGFDHNDDVSERKMRSKERDCLE 143 >gi|67920493|ref|ZP_00514013.1| Protein of unknown function UPF0054 [Crocosphaera watsonii WH 8501] gi|67857977|gb|EAM53216.1| Protein of unknown function UPF0054 [Crocosphaera watsonii WH 8501] Length = 174 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 7/116 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAY 108 EL+L T I++LN +YR ++PT+VL+F P D L LGDI+++ Sbjct: 59 ELTLRLTGDKEIQSLNAQYRQKNQPTDVLAFATLEWDFPVVTPPEDLLEPLYLGDIIISV 118 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E +A + L L HGFLHLLG+DH D+ M + ++L +G+ Sbjct: 119 ETARKQAQQQDHPLKRELPWLATHGFLHLLGWDHPDEPSLEEMLQQQETLLRLVGL 174 >gi|258645788|ref|ZP_05733257.1| putative metalloprotease [Dialister invisus DSM 15470] gi|260403159|gb|EEW96706.1| putative metalloprotease [Dialister invisus DSM 15470] Length = 164 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 4/113 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--TAFASSDGCSSLMLGDIVLA-YEII 111 ELSL+ D+ I LN YRG+D PT+VLSF +LGDI++ Y + Sbjct: 39 AELSLLICDADTIHELNKTYRGVDAPTDVLSFALNEGEEEDGMEEEKVLGDIIINLYRAV 98 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E +A G E + +L +HGFLH+LGYDH D ++ M E IL G+ Sbjct: 99 E-QAEEFGHSKEREMAYLSVHGFLHILGYDHYDPEEKRKMREKEEEILGACGM 150 >gi|308808316|ref|XP_003081468.1| Protein of unknown function UPF0054 (ISS) [Ostreococcus tauri] gi|116059931|emb|CAL55990.1| Protein of unknown function UPF0054 (ISS) [Ostreococcus tauri] Length = 122 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 43/65 (66%) Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 A+E EA G FE H+ HLI+HG LHLLGYDH+ D DA +ME LE IL +LG+ + Sbjct: 52 AWETCGREAAEQGIAFEQHVTHLIVHGVLHLLGYDHMRDADATLMERLEAEILGNLGLPN 111 Query: 167 PYEVD 171 PY D Sbjct: 112 PYGED 116 >gi|114567084|ref|YP_754238.1| metal-dependent hydrolase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317921|sp|Q0AWN7|RRMF_SYNWW RecName: Full=Probable rRNA maturation factor gi|114338019|gb|ABI68867.1| metal-dependent hydrolase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 156 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 7/126 (5%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--- 96 V+N ++K + N ELS++ D+ I+ LN YRG + PT+VLSF S + Sbjct: 25 VANAVAKMVKLSPN-TELSVMIVDNSYIKELNLIYRGENNPTDVLSFAMNELSEEEMDLD 83 Query: 97 ---SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +LGDIV++ E ++ G E L +LI HG LHLLGYDH ++++ +M Sbjct: 84 LPGEVNVLGDIVVSLEKAVSQSEEYGHSAERELGYLIAHGMLHLLGYDHENEEERNLMRN 143 Query: 154 LERSIL 159 LE I+ Sbjct: 144 LEERIM 149 >gi|197294661|ref|YP_001799202.1| hypothetical protein PAa_0617 [Candidatus Phytoplasma australiense] gi|226707789|sp|B1VAH8|RRMF_PHYAS RecName: Full=Probable rRNA maturation factor gi|171853988|emb|CAM11951.1| Conserved hypothetical protein [Candidatus Phytoplasma australiense] Length = 144 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 +KEN ++ LVF +I+ LN +R + T+VLSFP F+ + LGD+ + +E Sbjct: 27 IKEN-NQMHLVFVTKEKIKQLNTFFRKKNFVTDVLSFPNEFSFNPNLKDDSLGDVFICFE 85 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++A L E + L++HGFLHL GY H ++++ M L+ IL+ + + Sbjct: 86 QAQLQAQKLLHSLEREIAFLVVHGFLHLKGYQHNNEEELEKMIHLQEKILKKINL 140 >gi|116670778|ref|YP_831711.1| putative metalloprotease [Arthrobacter sp. FB24] gi|145572771|sp|A0JX41|RRMF_ARTS2 RecName: Full=Probable rRNA maturation factor gi|116610887|gb|ABK03611.1| protein of unknown function UPF0054 [Arthrobacter sp. FB24] Length = 157 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 14/142 (9%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKP--TNVLSFP----TA 89 + L++ FV E + ELS++ D +E L+ E +D+P T+VLS P T Sbjct: 16 AQLVALARFVFERLYIHPQAELSILLVDEPAMEKLHLEL--MDEPGATDVLSVPMDELTP 73 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 MLGDI + ++ E++A G ++ ++ L HG LHLLGYDH D ++ Sbjct: 74 GTPDKPTPQGMLGDIAVCPQVAEVQARNAGHSTQDEMLLLTTHGILHLLGYDHADPEEKE 133 Query: 150 VMEGLERSILEDL-GINDPYEV 170 M GL+R +LE G P E Sbjct: 134 EMFGLQRELLEGFTGKEAPSET 155 >gi|332530325|ref|ZP_08406271.1| putative metal-dependent hydrolase [Hylemonella gracilis ATCC 19624] gi|332040311|gb|EGI76691.1| putative metal-dependent hydrolase [Hylemonella gracilis ATCC 19624] Length = 169 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 7/101 (6%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YR D TNVL+F ++ D+VL ++ EA K E H HL Sbjct: 75 LNRDYRNKDYATNVLTFDYT------KEPVVTADLVLCAPVVAKEAKEQNKSPEEHYAHL 128 Query: 130 IIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH + DA ME LE ++E +G+ +PYE Sbjct: 129 LVHGTLHAQGYDHETSETDALEMEALEVLLMEGMGLGNPYE 169 >gi|218781165|ref|YP_002432483.1| hypothetical protein Dalk_3326 [Desulfatibacillum alkenivorans AK-01] gi|218762549|gb|ACL05015.1| protein of unknown function UPF0054 [Desulfatibacillum alkenivorans AK-01] Length = 127 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 59/107 (55%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS++ D R+ L+ EY G PTNVL+FP + + ++GD+V+ ++ EA Sbjct: 18 ELSVLIVDGGRMAELHEEYVGKQGPTNVLAFPMTEGPFNEINPEIIGDVVICTDVAAKEA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 G + + L+IHG LHL+G+DH + ++ +M+ E + E Sbjct: 78 EDAGVDLYTRALELLIHGILHLVGHDHAEPEETALMQAKEAELFEQF 124 >gi|227514587|ref|ZP_03944636.1| metal-dependent hydrolase [Lactobacillus fermentum ATCC 14931] gi|227086998|gb|EEI22310.1| metal-dependent hydrolase [Lactobacillus fermentum ATCC 14931] Length = 157 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 18/145 (12%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L E A+A L V E E+SL F + I LN +YRGID+ T+V+SF A Sbjct: 20 LAEKALAQAAERLD-----VPEQ-AEMSLTFVLNPEIRELNRDYRGIDRATDVISF--AI 71 Query: 91 ASSDGCSSLM----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 D ++L LGD+V++ + + +A L + L +L++HGFLHL GY Sbjct: 72 EDDDDLANLPAEIRAELPVELGDLVISIDKVTEQALFLNHSADRELGYLLVHGFLHLNGY 131 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH + D M L+ IL+ LG++ Sbjct: 132 DHEEPADEKKMFTLQEEILDGLGLS 156 >gi|78223573|ref|YP_385320.1| hypothetical protein Gmet_2370 [Geobacter metallireducens GS-15] gi|123742815|sp|Q39T29|RRMF_GEOMG RecName: Full=Probable rRNA maturation factor gi|78194828|gb|ABB32595.1| protein of unknown function UPF0054 [Geobacter metallireducens GS-15] Length = 150 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+V T I +N EY D+PTNV+SF A + MLGD++++ + EA Sbjct: 36 ELSVVITGDLGIRRVNREYLHKDRPTNVISFAMAEGEFGALNPAMLGDVIISADTAAREA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSIL 159 G F + L L++HG LH+ GYDH + +A ME ER I Sbjct: 96 EEGGVSFWSRLCFLLLHGILHITGYDHERSGEAEARRMEAKEREIF 141 >gi|268611989|ref|ZP_06145716.1| hypothetical protein RflaF_21081 [Ruminococcus flavefaciens FD-1] Length = 170 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 10/118 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-------SSLMLGDIVLAY 108 E+S+ F ++ I+ LN YR D T+VLSFP DG ++ LGD+V++ Sbjct: 43 EVSVSFVSNNEIKNLNKIYRNKDSVTDVLSFP--LTGDDGTVEINPETGAVQLGDVVISL 100 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN 165 E +A G E + L +H LHLLGYDH + D +M E S+LE LGI+ Sbjct: 101 ETAVKQAQNYGHSLEREVGFLTVHSMLHLLGYDHETSQLDQRIMREKEESVLEKLGIS 158 >gi|315640635|ref|ZP_07895741.1| metalloprotease [Enterococcus italicus DSM 15952] gi|315483663|gb|EFU74153.1| metalloprotease [Enterococcus italicus DSM 15952] Length = 160 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 12/122 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----------PTAFASS--DGCSSLMLG 102 E+S+ F D++ I+ +N YR D PT+V+SF P F D LG Sbjct: 37 TEMSITFMDNNEIQEINRVYRNKDMPTDVISFALEEEGEDELPIIFDEEFDDSQFPRNLG 96 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 D++++ E +A G + L L +HGFLHL GYDH+ +D VM GL++ IL+ Sbjct: 97 DLMISVERANEQAEEYGHSVDRELGFLALHGFLHLNGYDHMTPEDEKVMFGLQKEILDAY 156 Query: 163 GI 164 G+ Sbjct: 157 GL 158 >gi|308233980|ref|ZP_07664717.1| hypothetical protein AvagD15_02962 [Atopobium vaginae DSM 15829] gi|328944011|ref|ZP_08241476.1| hypothetical protein HMPREF0091_10701 [Atopobium vaginae DSM 15829] gi|327491980|gb|EGF23754.1| hypothetical protein HMPREF0091_10701 [Atopobium vaginae DSM 15829] Length = 168 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 10/110 (9%) Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTA------FASSDGCSSLMLGDIVLAYEIIEI 113 + TD H I TLN +R D+PT+V+S A+ + C LGDIVLA I Sbjct: 46 IVTDEH-IHTLNKTWRNQDRPTDVISLECERPDDPDLANGEVCE---LGDIVLAPNYIAH 101 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A+ E+ L+IHG LHLLGYDH+ D +A VME LE +L ++G Sbjct: 102 QADSFHMAHEDECRLLLIHGMLHLLGYDHLTDDEAEVMEALEDRLLLEVG 151 >gi|226307220|ref|YP_002767180.1| hypothetical protein RER_37330 [Rhodococcus erythropolis PR4] gi|229493192|ref|ZP_04386984.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|259647013|sp|C1A1F6|RRMF_RHOE4 RecName: Full=Probable rRNA maturation factor gi|226186337|dbj|BAH34441.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229319923|gb|EEN85752.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 180 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 11/132 (8%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------A 89 LIS FV + ELS+V DS + L+ + + PT+V+SFP Sbjct: 16 PELISVARFVIARMDVHPAAELSMVLVDSATMADLHVRWMDLPGPTDVMSFPMDELEPGG 75 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 S MLGDIVL +A+ G + L L +HG LHLLGYDH + ++ Sbjct: 76 RPDSPEPGPSMLGDIVLCPSFAADQADKAGHSLAHELALLTVHGVLHLLGYDHAEPEEEK 135 Query: 150 VMEGLERSILED 161 M GL+ S+LE+ Sbjct: 136 EMFGLQNSLLEE 147 >gi|219847946|ref|YP_002462379.1| hypothetical protein Cagg_1028 [Chloroflexus aggregans DSM 9485] gi|254799905|sp|B8G6K6|RRMF_CHLAD RecName: Full=Probable rRNA maturation factor gi|219542205|gb|ACL23943.1| protein of unknown function UPF0054 [Chloroflexus aggregans DSM 9485] Length = 153 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 15/119 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---------LGDIVL 106 E+ + T + LN ++RG+D PT+VLSF + DG SS LGDI + Sbjct: 38 EVCIRITTDAELHRLNRDFRGVDAPTDVLSF-----ADDGNSSQFVTAPNLPRYLGDIAI 92 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGI 164 +Y+ + ++A G L +L +HG LHLLGYDH D +M E +++ LG+ Sbjct: 93 SYDRVLVQAAEYGHSPARELAYLTVHGMLHLLGYDHERGPADEALMRAREEAVMTALGL 151 >gi|329770521|ref|ZP_08261899.1| metalloprotease [Gemella sanguinis M325] gi|328836270|gb|EGF85939.1| metalloprotease [Gemella sanguinis M325] Length = 157 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 11/124 (8%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP---------TAFASSDGCSSLM 100 + +I E+SL F + I+ +N +YRG D PT+V+SF + D +S+ Sbjct: 34 INTDITEMSLSFVNKEEIQEINRDYRGKDVPTDVISFALNDEVESEISIIGLEDEINSI- 92 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 GD+++ +I + +A F+ + L +HGFLHLLGYDH+ +D M + ILE Sbjct: 93 -GDVIICVDIAKEQAEDYNHSFDREIGFLAVHGFLHLLGYDHMTPEDEKEMFEKQDKILE 151 Query: 161 DLGI 164 + G+ Sbjct: 152 EFGL 155 >gi|330469595|ref|YP_004407338.1| metal-binding heat shock protein [Verrucosispora maris AB-18-032] gi|328812566|gb|AEB46738.1| metal-binding heat shock protein [Verrucosispora maris AB-18-032] Length = 157 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDI 104 + ELS++ D + LN + G D PT+VL+FP S D G +LGDI Sbjct: 34 LAELSVLLVDVGYMTELNHRWMGGDGPTDVLAFPMDEGSIDHGPGENAAVGGEPALLGDI 93 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 VL E+ +A G ++ L L +HG LHLLGYDH + ++ M GL+ +L Sbjct: 94 VLCPEVAAKQAATAGHSADDELHLLTVHGVLHLLGYDHAEPEEEREMFGLQARLL 148 >gi|301165909|emb|CBW25482.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 206 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 12/123 (9%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-------GDIVLAY 108 EL L I+ LN E+R DK T+VLSFP + G L + GDIV+ Sbjct: 80 ELDLSLCSEDEIKELNSEHRDKDKVTDVLSFPGYDSLRKGAEDLFIFEENLHFGDIVICR 139 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLE----RSILEDLG 163 E+ + +A +E LVHL +HGFLHL GYDH + +++ + LE + I E++G Sbjct: 140 EVCQKQAQEFAITYEQELVHLFVHGFLHLCGYDHEISEEEDKIHFSLEELLVKEIYENMG 199 Query: 164 IND 166 +++ Sbjct: 200 LDN 202 >gi|266623022|ref|ZP_06115957.1| putative metalloprotease [Clostridium hathewayi DSM 13479] gi|288865224|gb|EFC97522.1| putative metalloprotease [Clostridium hathewayi DSM 13479] Length = 165 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 16/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 E++++ TD+ I +N EYR ID T+VLSFP A S Sbjct: 38 AEVNVLLTDNEDIRQINKEYRDIDNATDVLSFPMADYDSPSDFDRLEDMASDYFNPETGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDIV++ + ++ +A G L L+ H LHL GYDH+ D++ VME + I Sbjct: 98 LLLGDIVISVDKVKEQAEKYGHSETRELAFLVAHSMLHLCGYDHMVDEERLVMEKKQEEI 157 Query: 159 LEDLG 163 L+ G Sbjct: 158 LKRGG 162 >gi|160915030|ref|ZP_02077243.1| hypothetical protein EUBDOL_01038 [Eubacterium dolichum DSM 3991] gi|158432829|gb|EDP11118.1| hypothetical protein EUBDOL_01038 [Eubacterium dolichum DSM 3991] Length = 155 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 3/108 (2%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIE 114 S++F +I +N EYR ID+PT+V+SF + + S+ LGDI + E I + Sbjct: 41 SVIFVTPQKIHEINREYRHIDRPTDVISFALLDEADEYEIMEDSIELGDIFINIEAIVKQ 100 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 A+ G + L HG LHLLGYDH++ ++ VM L+ IL D+ Sbjct: 101 ASEYGHSMRREVCFLFTHGLLHLLGYDHMEQEEERVMFALQDDILYDI 148 >gi|332297629|ref|YP_004439551.1| metalloprotease ybeY [Treponema brennaborense DSM 12168] gi|332180732|gb|AEE16420.1| metalloprotease ybeY [Treponema brennaborense DSM 12168] Length = 162 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEI 113 E+S++F I LN +YR I PT+VLSF + DG GDIV++ + +E Sbjct: 42 EVSVLFCADPFIAELNLQYRSIKGPTDVLSFELGDEYIDEDGVPWTSAGDIVVSIDTLER 101 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 A G + L L+IHG LHL GYDH D+ M L+ SIL D Sbjct: 102 NALEFGVPVDQELKRLLIHGVLHLSGYDHSDNSPEQEMLVLQESILPDF 150 >gi|184155314|ref|YP_001843654.1| hypothetical protein LAF_0838 [Lactobacillus fermentum IFO 3956] gi|238692971|sp|B2GBZ2|RRMF_LACF3 RecName: Full=Probable rRNA maturation factor gi|183226658|dbj|BAG27174.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] Length = 157 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 18/145 (12%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L E A+A L V E E+SL F + I LN +YRGID+ T+V+SF A Sbjct: 20 LAEKALAQAAERLD-----VPEQ-AEMSLTFVLNPEIRELNRDYRGIDRATDVISF--AI 71 Query: 91 ASSDGCSSLM----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 D ++L LGD+V++ + + +A L + L +L++HGFLHL GY Sbjct: 72 EDDDDLANLPAEIRAELPVELGDLVISIDKVTEQALFLNHSADRELGYLLVHGFLHLNGY 131 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH + D M L+ IL+ LG++ Sbjct: 132 DHEEPADEEKMFTLQEEILDGLGLS 156 >gi|309811100|ref|ZP_07704898.1| translation metalloprotein YbeY [Dermacoccus sp. Ellin185] gi|308435064|gb|EFP58898.1| translation metalloprotein YbeY [Dermacoccus sp. Ellin185] Length = 168 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 5/117 (4%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLG 102 FV N VELS+ D +ETL+ ++ + PT+V+SFP T + + MLG Sbjct: 28 AMFVHPN-VELSIRIIDEAAMETLHVQWMDLPGPTDVMSFPMDELTPGSEREPSQEGMLG 86 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 DIVL + +A G + L+ L +HG LHLLGYDH + + M L+R+IL Sbjct: 87 DIVLCPSVAAAQAAAAGHDTMEELLLLTVHGVLHLLGYDHAEPDERVEMFELQRTIL 143 >gi|147669820|ref|YP_001214638.1| hypothetical protein DehaBAV1_1181 [Dehalococcoides sp. BAV1] gi|189038619|sp|A5FPW5|RRMF_DEHSB RecName: Full=Probable rRNA maturation factor gi|146270768|gb|ABQ17760.1| protein of unknown function UPF0054 [Dehalococcoides sp. BAV1] Length = 160 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 12/137 (8%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF- 86 + L F K +++ K + EL +V T I+ LN +YR +D+PT+VLSF Sbjct: 11 FKKLVSAQFLKKIASETLKAQAADPS-SELGIVITGQEEIKELNCKYRQLDEPTDVLSFY 69 Query: 87 -----PTAFASSDGCSS-----LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 P + D + LG+++++Y E++A G + L L+IHG LH Sbjct: 70 MLEENPENLTAPDDFPTPPDEATHLGEVIISYPQAELQAGAAGHSVNHELAFLLIHGVLH 129 Query: 137 LLGYDHVDDKDACVMEG 153 LLGYDH + VM+ Sbjct: 130 LLGYDHHETAAEAVMKS 146 >gi|289433031|ref|YP_003462904.1| hypothetical protein DehalGT_1088 [Dehalococcoides sp. GT] gi|288946751|gb|ADC74448.1| protein of unknown function UPF0054 [Dehalococcoides sp. GT] Length = 160 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 12/137 (8%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF- 86 + L F K +++ K + EL +V T I+ LN +YR +D+PT+VLSF Sbjct: 11 FKKLVSAQFLKKIASETLKAQAADPS-SELGIVITGQEEIKELNCKYRQLDEPTDVLSFY 69 Query: 87 -----PTAFASSDGCSS-----LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 P + D + LG+++++Y E++A G + L L+IHG LH Sbjct: 70 MLEENPENLTAPDDFPTPPDEATHLGEVIISYPQAELQAGAAGHSVNHELAFLLIHGVLH 129 Query: 137 LLGYDHVDDKDACVMEG 153 LLGYDH + VM+ Sbjct: 130 LLGYDHHETAAEAVMKS 146 >gi|291277187|ref|YP_003516959.1| hypothetical protein HMU09740 [Helicobacter mustelae 12198] gi|290964381|emb|CBG40231.1| Putative hypothetical protein [Helicobacter mustelae 12198] Length = 151 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 10/113 (8%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 TL E + ++ +S ++ L+F D + I+ +N EYR DKPT+VLSFP Sbjct: 13 TLLETARLEKIAQTLSPQRMIE-------LLFVDENMIQGMNKEYRNQDKPTDVLSFPL- 64 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + G +++ LG +V+ I + A+ G E + L IHG LHL GYDH Sbjct: 65 --DAMGIANMPLGSVVICIPIAQGAAHFFGHSLEEEIALLFIHGVLHLQGYDH 115 >gi|313682547|ref|YP_004060285.1| hypothetical protein Sulku_1423 [Sulfuricurvum kujiense DSM 16994] gi|313155407|gb|ADR34085.1| protein of unknown function UPF0054 [Sulfuricurvum kujiense DSM 16994] Length = 187 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 13/134 (9%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVK--ENIV------ELSLVFTDSHRIE 68 +E+ ++G I ++ +C + N K Y + E I E+ L+ TD+ I Sbjct: 28 IESPIFGTFISIQNICYNTAMIELDNRTDKTYNFQLLEQIADLLSDREIELILTDNVEIA 87 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+RGIDK T+VLSFP SD LG IV++ + + AN L ++ + Sbjct: 88 EINREFRGIDKATDVLSFP-----SDPFPGAPLGSIVISVDKVASVANELKHSEDHEIAL 142 Query: 129 LIIHGFLHLLGYDH 142 L IHG LHLLG+DH Sbjct: 143 LFIHGMLHLLGFDH 156 >gi|300310056|ref|YP_003774148.1| metal-dependent hydrolase [Herbaspirillum seropedicae SmR1] gi|300072841|gb|ADJ62240.1| metal-dependent hydrolase protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 13/161 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +P+ L ++V+ + DE +T+ + + V + F +L+L F S Sbjct: 1 MPKHKLTLSVQ---YADERLKKTITTTLLRRWVQAAL----FAP---AQLTLRFVGSEEG 50 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +YRG D TNVL+F + D S + DI+ +++E EA K E H Sbjct: 51 RDLNRDYRGKDYATNVLTFAY---TEDEDSEVTEADIIFCTDVLEKEAAEQKKSVEEHTA 107 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LH GYDH DD++A ME LE IL LG +PY Sbjct: 108 HLVVHGVLHAQGYDHEDDEEADEMEALETEILAGLGYANPY 148 >gi|188591271|ref|YP_001795871.1| unkown domain/ metalloprotease fusion protein [Cupriavidus taiwanensis LMG 19424] gi|170938165|emb|CAP63151.1| putative metal-dependent hydrolase, COG0319; putative diacylglycerol kinase [Cupriavidus taiwanensis LMG 19424] Length = 251 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 61/115 (53%), Gaps = 4/115 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L++ F TLN YRG D TNVL+F A D + GDIVL ++E EA Sbjct: 135 LTIRFVGEEEGRTLNRTYRGKDYATNVLTFAYAEREDDPVT----GDIVLCCPVVEAEAR 190 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E H HL++HG LH GY+H DD +A ME +E L+ LG DPY + Sbjct: 191 AQRKPLEAHYAHLVVHGVLHAQGYEHEDDAEAEEMEAIETETLQALGYADPYRAE 245 >gi|317497353|ref|ZP_07955676.1| hypothetical protein HMPREF0996_00656 [Lachnospiraceae bacterium 5_1_63FAA] gi|316895422|gb|EFV17581.1| hypothetical protein HMPREF0996_00656 [Lachnospiraceae bacterium 5_1_63FAA] Length = 170 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 15/119 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---------------FASSDGCSSLM 100 E++L+ TD+ I +N E R ID+PT+VLSFP A A + Sbjct: 39 EVNLMLTDNETIHAINKEQREIDRPTDVLSFPMAEYEEPADFSKIEEDPMAFDPESGEFL 98 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDIV++ + + +A G E LI H LHL GYDH+++++ ME + IL Sbjct: 99 LGDIVISMDKVWEQAENYGHSREREYAFLIAHSMLHLFGYDHMEEEERKDMEKRQEEIL 157 >gi|93005420|ref|YP_579857.1| hypothetical protein Pcryo_0590 [Psychrobacter cryohalolentis K5] gi|122415831|sp|Q1QD80|RRMF_PSYCK RecName: Full=Probable rRNA maturation factor gi|92393098|gb|ABE74373.1| protein of unknown function UPF0054 [Psychrobacter cryohalolentis K5] Length = 155 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAY 108 +E I L + TD LN E R D TN+LS+P+ ++ +L LG++++ + Sbjct: 34 QEKIKVLDIYITDEVEGRELNLEARQKDYATNILSYPSDLPAAIIGLMPTLPLGELIICH 93 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDP 167 ++ EA KE H+ HL+IHG LHLLG+DH + + ME E IL L I +P Sbjct: 94 AVMIREAAEQNKEAVQHISHLLIHGVLHLLGFDHELGQAEQDEMERFEIEILAGLNIPNP 153 Query: 168 Y 168 Y Sbjct: 154 Y 154 >gi|259503179|ref|ZP_05746081.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259168836|gb|EEW53331.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 159 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 12/122 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----------LGD 103 E+S+ + I LN +YRG+D+ T+VLSF A D +M LGD Sbjct: 38 TEMSVTLMTNPAIRKLNQQYRGVDRATDVLSF-AAEERGDETPIIMAPELAAEIPENLGD 96 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + ++ + + +A LG + L L++HGFLHL GYDH + D M L+R IL + G Sbjct: 97 LFVSVDKVAEQAKFLGHSADRELGFLVVHGFLHLNGYDHEEPADEQRMFDLQREILNEYG 156 Query: 164 IN 165 + Sbjct: 157 LQ 158 >gi|73749054|ref|YP_308293.1| hypothetical protein cbdb_A1322 [Dehalococcoides sp. CBDB1] gi|123620002|sp|Q3ZYT5|RRMF_DEHSC RecName: Full=Probable rRNA maturation factor gi|73660770|emb|CAI83377.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1] Length = 166 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 12/137 (8%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF- 86 + L F K +++ K + EL +V T I+ LN +YR +D+PT+VLSF Sbjct: 17 FKKLVSAQFLKKIASETLKAQAADPS-SELGIVITGQEEIKELNCKYRQLDEPTDVLSFY 75 Query: 87 -----PTAFASSDGCSS-----LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 P + D + LG+++++Y E++A G + L L+IHG LH Sbjct: 76 MLEENPENLTAPDDFPTPPDEATHLGEVIISYPQAELQAGAAGHSVNHELAFLLIHGVLH 135 Query: 137 LLGYDHVDDKDACVMEG 153 LLGYDH + VM+ Sbjct: 136 LLGYDHHETAAEAVMKS 152 >gi|302386448|ref|YP_003822270.1| protein of unknown function UPF0054 [Clostridium saccharolyticum WM1] gi|302197076|gb|ADL04647.1| protein of unknown function UPF0054 [Clostridium saccharolyticum WM1] Length = 165 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 16/121 (13%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFA----SSDGC-----SS 98 E++++ T + I +N EYR +D PT+VLSFP + F ++D C Sbjct: 38 AEVNVLITGNEEIRQINREYRDMDTPTDVLSFPMIEYECPSEFEHLEETADDCFHPETGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDIV++ +E +A G L L+ H LHL GYDH+++ + +ME + I Sbjct: 98 LLLGDIVISVNKVEEQAEKYGHSQTRELAFLVAHSMLHLCGYDHMEEDEREIMEKKQEEI 157 Query: 159 L 159 L Sbjct: 158 L 158 >gi|170078371|ref|YP_001735009.1| hypothetical protein SYNPCC7002_A1764 [Synechococcus sp. PCC 7002] gi|238692816|sp|B1XPN9|RRMF_SYNP2 RecName: Full=Probable rRNA maturation factor gi|169886040|gb|ACA99753.1| conserved hypothetical protein (TIGR00043) [Synechococcus sp. PCC 7002] Length = 163 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 29/164 (17%) Query: 9 PRLDLQIAVENA-----------LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVEL 57 P L+ +I VENA W + + R L E+ A ++ GY EL Sbjct: 3 PVLECEIFVENASGLELPELAIAPWENHLQ-RWLPELTAALPPAD----GY-------EL 50 Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASS-DGCSSLMLGDIVLAYEIIEI 113 +L FT I LN +YR D+PT+VLSF FAS L LGDI+++ E + Sbjct: 51 TLRFTTDAEIHNLNHQYRHKDQPTDVLSFAALEDNFASPLPPGEPLYLGDIIVSVETAQR 110 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +A + L L+ HG LHLLG+DH D +A ++E L+R Sbjct: 111 QAQERQHSLQTELGWLVSHGLLHLLGWDHPD--EARLIEMLDRQ 152 >gi|78213952|ref|YP_382731.1| hypothetical protein Syncc9605_2444 [Synechococcus sp. CC9605] gi|123577427|sp|Q3AGV6|RRMF_SYNSC RecName: Full=Probable rRNA maturation factor gi|78198411|gb|ABB36176.1| Protein of unknown function UPF0054 [Synechococcus sp. CC9605] Length = 166 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 2/109 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIE 112 + L L F D I LN +R PT+VLSF + D S+ LGDIV++ E Sbjct: 57 LSLGLRFIDDATIADLNSTWRQKTGPTDVLSFAALDDAGDWMEGPSIELGDIVVSLETAR 116 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +A G + L L+ HG LHLLG+DH D+K M L+ +L D Sbjct: 117 RQAQEQGHSLQQELRWLVSHGLLHLLGWDHPDEKSLATMLALQERLLGD 165 >gi|25028742|ref|NP_738796.1| putative metalloprotease [Corynebacterium efficiens YS-314] gi|259507803|ref|ZP_05750703.1| metalloprotease [Corynebacterium efficiens YS-314] gi|29428209|sp|Q8FNF8|RRMF_COREF RecName: Full=Probable rRNA maturation factor gi|23494028|dbj|BAC18996.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164596|gb|EEW49150.1| metalloprotease [Corynebacterium efficiens YS-314] Length = 200 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSS--LMLGDIVLA 107 E S+ DS I L+ ++ ++ PT+V+SFP ++ DG + MLGDIVL Sbjct: 36 AEASIHIVDSDTIAELHVKWLDLEGPTDVMSFPMDELTPGYSRPDGGAPGPAMLGDIVLC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E E +A G + + L L +HG LHLLGYDHV+ M L+ +L D Sbjct: 96 PEFAEKQATKAGHDLSHELALLTVHGCLHLLGYDHVEPAQEREMFALQNELLAD 149 >gi|149194504|ref|ZP_01871600.1| hypothetical protein CMTB2_00634 [Caminibacter mediatlanticus TB-2] gi|149135248|gb|EDM23728.1| hypothetical protein CMTB2_00634 [Caminibacter mediatlanticus TB-2] Length = 137 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 7/109 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+ T I+ LN EYR DKPT+VLSFP + + LG IV++ + + EA Sbjct: 28 DVELILTTDEEIQKLNKEYRNKDKPTDVLSFPL-----EDFPGMPLGSIVISIDTAKKEA 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G ++ + L IHG LHLLGYDH + D M E+ I+E + Sbjct: 83 EKFGHSIDDEIKLLFIHGLLHLLGYDH--EVDNGEMREKEKEIIEKFNL 129 >gi|26553790|ref|NP_757724.1| hypothetical protein MYPE3350 [Mycoplasma penetrans HF-2] gi|29428203|sp|Q8EW68|RRMF_MYCPE RecName: Full=Probable rRNA maturation factor gi|26453797|dbj|BAC44128.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 150 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 9/144 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKE---NIVELSLVFTDSHRIETLNFEYRGIDKP 80 DE + ++ K VS I F++E N + L D++ + +N +YR D P Sbjct: 8 DEKKFLSKKDISLIKKVSKFI----FIEEKLKNKIIFELHIIDNNESQKINKQYRNKDYP 63 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T+V+SF +F + +LG+I L+YE + +A FE L L+ HG HLLGY Sbjct: 64 TDVISF--SFWEEGLLKTALLGEIYLSYEKVVSQAEEFKHSFERELGFLVSHGIYHLLGY 121 Query: 141 DHVDDKDACVMEGLERSILEDLGI 164 DH ++ +A +M G + +L+ G+ Sbjct: 122 DHEEEDEAKIMFGKQYQVLKLCGL 145 >gi|326791149|ref|YP_004308970.1| metalloprotease ybeY [Clostridium lentocellum DSM 5427] gi|326541913|gb|ADZ83772.1| metalloprotease ybeY [Clostridium lentocellum DSM 5427] Length = 166 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 16/126 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----------------TAFASSDGCSS 98 VE+SL D I +N E+R ID+PT+VLSFP TA + Sbjct: 39 VEVSLTVVDLDAIHEINKEHREIDRPTDVLSFPQIDTEYIGHINWDTLDTASCVNYDTEE 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 ++LGDI+L + + +AN G + L+ H HLLGYDH+ ++D M + S+ Sbjct: 99 VILGDIILCADKAKEQANNYGHSLTREVCFLVAHSMFHLLGYDHMTEEDEKTMVRKQESV 158 Query: 159 LEDLGI 164 L+ L I Sbjct: 159 LQCLSI 164 >gi|332652573|ref|ZP_08418318.1| putative metalloprotease [Ruminococcaceae bacterium D16] gi|332517719|gb|EGJ47322.1| putative metalloprotease [Ruminococcaceae bacterium D16] Length = 322 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+ +I +E + G E + L +V+ A L ++G V E+ ++FTD I + Sbjct: 162 LNHEIIIETEVDGAEEYADLLRQVIPAA----LAAEGVDVP---CEVDVLFTDDEGIHQI 214 Query: 71 NFEYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N E R +D+PT+VLSFP T + G + + LGD+V++ E + + G Sbjct: 215 NLEQREVDRPTDVLSFPMFDLQPGEHPTQEDADPGDNLVPLGDMVISLERAKAQGEEYGH 274 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDLGI 164 + +L +H LHLLGYDH+D+ M E IL LGI Sbjct: 275 GTRREVAYLAVHSVLHLLGYDHMDEGPMKKQMRQREEEILGTLGI 319 >gi|116333396|ref|YP_794923.1| metal-dependent hydrolase [Lactobacillus brevis ATCC 367] gi|122269917|sp|Q03SD0|RRMF_LACBA RecName: Full=Probable rRNA maturation factor gi|116098743|gb|ABJ63892.1| Predicted metal-dependent hydrolase [Lactobacillus brevis ATCC 367] Length = 162 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 13/123 (10%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-------------L 101 E+S+ ++ I +N +YRG+D+ T+V+SF + + + Sbjct: 38 TEMSVTLMNNEDIHRINQQYRGVDRATDVISFAIEDDDEEAADFPLVMDDELAAEIPENI 97 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI ++ + + +A+ LG +E L L++HGFLHL GYDH++ +D VM L+ IL+ Sbjct: 98 GDIFVSMDKVAEQADYLGHSYERELGFLVVHGFLHLNGYDHMEPEDEKVMFKLQADILDA 157 Query: 162 LGI 164 G+ Sbjct: 158 YGL 160 >gi|62901442|sp|Q74AR8|RRMF_GEOSL RecName: Full=Probable rRNA maturation factor Length = 178 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 15/168 (8%) Query: 4 KKVNLP--RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVF 61 K+ P R L++A+ N I R L +V A + L + GY ELS+V Sbjct: 18 KRTKRPEERRPLKVAITNRQKRHPIGTRRLRKV----AETILGALGY----PDSELSVVI 69 Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 T I +N +Y G D+PTNV+SF + +LGD++++ + EA G Sbjct: 70 TGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREAEEAGIA 129 Query: 122 FENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSI---LEDLGI 164 F + L L++HG LH+ GYDH + +A ME ER I LE+ G+ Sbjct: 130 FWSRLCFLLLHGTLHITGYDHERSGEAEARRMEAKEREIFALLENGGL 177 >gi|51245457|ref|YP_065341.1| pyridoxal phosphate biosynthetic protein [Desulfotalea psychrophila LSv54] gi|50876494|emb|CAG36334.1| probable pyridoxal phosphate biosynthetic protein [Desulfotalea psychrophila LSv54] Length = 393 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 4/118 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIEI 113 L++VF ++ N YR PTNVLSFP A S + + LGDI+++ + Sbjct: 37 LNIVFVSDAQMTWFNEHYREKKGPTNVLSFPFAEGSEEFLQQIPVHELGDIIISVDTAMR 96 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYEV 170 EA G+ + L L++HG LHL+GYDH +DA +ME E+ +L++ IN +++ Sbjct: 97 EAIEYGQTISHRLNWLMVHGILHLVGYDHERGPEDALLMEDKEQVLLKEYAINRRFKM 154 >gi|291287436|ref|YP_003504252.1| hypothetical protein Dacet_1527 [Denitrovibrio acetiphilus DSM 12809] gi|290884596|gb|ADD68296.1| protein of unknown function UPF0054 [Denitrovibrio acetiphilus DSM 12809] Length = 151 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 4/93 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-SLMLGDIVLAYEIIEIE 114 E+SL+ T RI+ LN EYR D+ T+VLSFP S D S MLGDIV++ E + + Sbjct: 39 EISLLLTTDDRIKELNGEYRQKDRSTDVLSFPM---SEDPLSEGGMLGDIVISLETAKEQ 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 A+ + + L IHG LHL+GY+H +D D Sbjct: 96 ADEAAIMPDREIAFLFIHGLLHLMGYEHENDPD 128 >gi|119025739|ref|YP_909584.1| putative metalloprotease [Bifidobacterium adolescentis ATCC 15703] gi|145558837|sp|A1A1B9|RRMF_BIFAA RecName: Full=Probable rRNA maturation factor gi|118765323|dbj|BAF39502.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 181 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSL--MLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP DG + + +LGDIVL + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGGTEMEGVLGDIVLCPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|154487439|ref|ZP_02028846.1| hypothetical protein BIFADO_01291 [Bifidobacterium adolescentis L2-32] gi|154083957|gb|EDN83002.1| hypothetical protein BIFADO_01291 [Bifidobacterium adolescentis L2-32] Length = 181 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSL--MLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP DG + + +LGDIVL + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGGTEMEGVLGDIVLCPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|226360377|ref|YP_002778155.1| metalloprotease [Rhodococcus opacus B4] gi|254807287|sp|C1AUK2|RRMF_RHOOB RecName: Full=Probable rRNA maturation factor gi|226238862|dbj|BAH49210.1| hypothetical protein [Rhodococcus opacus B4] Length = 180 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 11/131 (8%) Query: 42 NLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AF 90 LIS FV + ELS+V DS + L+ + + PT+V+SFP Sbjct: 17 ELISVARFVIARMDVHPAAELSMVLVDSATMADLHMRWMDLPGPTDVMSFPMDELEPGGR 76 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 S MLGDIVL +A G + L L +HG LHLLGYDH + ++ Sbjct: 77 PDSPEPGPSMLGDIVLCPSFAADQAEKAGHPLAHELALLTVHGVLHLLGYDHAEPEEEKE 136 Query: 151 MEGLERSILED 161 M GL+ +L+D Sbjct: 137 MFGLQNQLLDD 147 >gi|291567588|dbj|BAI89860.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 186 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 21/138 (15%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---------PTAFASSDG 95 +KGY ELSL TD I+ N +YR +D+ T+VLSF P S Sbjct: 53 AKGY-------ELSLRLTDDREIQAFNAQYRQLDQATDVLSFAALETSLVMPAEHLSLHP 105 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 C LGDI+++ E +A L L HG LHLLG+DH DD+ M + Sbjct: 106 C---YLGDIIISVETAFRQAQQARHNLTTELAWLTSHGLLHLLGWDHPDDRSLTRMLEQQ 162 Query: 156 RSILE--DLGINDPYEVD 171 +++L+ +L I Y D Sbjct: 163 KALLQKVNLQIGSGYAWD 180 >gi|15894575|ref|NP_347924.1| putative metalloprotease [Clostridium acetobutylicum ATCC 824] gi|26006917|sp|Q97JI7|RRMF_CLOAB RecName: Full=Probable rRNA maturation factor gi|15024222|gb|AAK79264.1|AE007641_10 Uncharacterized conserved predicted metal-binding protein, YQFG ortholog [Clostridium acetobutylicum ATCC 824] gi|325508707|gb|ADZ20343.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 166 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFAS-SDGCS---------S 98 E+S++F D+ I +N E R +DK T+VLSFP F + C + Sbjct: 39 EVSVIFVDNETIREINRENREVDKVTDVLSFPMLEYGEGKVFKDIYEECDFEDEYFDEGN 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDI L+ E E ++ G F +L +H LHL+GYDH+ D+D M E I Sbjct: 99 LVLGDIALSLERAEEQSKEYGHSFLREAAYLTVHSVLHLMGYDHMVDEDKIKMRKREEEI 158 Query: 159 LEDLGIN 165 L IN Sbjct: 159 LSHFDIN 165 >gi|308273339|emb|CBX29942.1| Putative metalloprotease GSU2284 [uncultured Desulfobacterium sp.] Length = 173 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 18/149 (12%) Query: 3 VKKVNLPRLDLQIAVENALWG-------DEIHLRTLCEVVFAKAVSNLI--SKGYFVKEN 53 + +N+P+ Q A+E G +++ +R + A+A+ N + KG Sbjct: 5 ITALNIPKQQFQ-ALEKGKMGVLINNSQNKLRIRKIQVRKAAQAILNALDCPKG------ 57 Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 ELS++ D I LN +Y P NV+SFP + +LGD+V++ E + Sbjct: 58 --ELSILIEDDDGITGLNEKYLQRKGPANVISFPLRDVNFPEIEHDLLGDVVISAETTQR 115 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH 142 E N LG F+ L+IHG LHL GYDH Sbjct: 116 EGNSLGTGFDKRFAELLIHGILHLFGYDH 144 >gi|307721060|ref|YP_003892200.1| hypothetical protein Saut_1140 [Sulfurimonas autotrophica DSM 16294] gi|306979153|gb|ADN09188.1| protein of unknown function UPF0054 [Sulfurimonas autotrophica DSM 16294] Length = 139 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 5/87 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ LV T + I+ +N EYR IDKPT+VLSFP + LG IV++ +++ +A Sbjct: 28 DIELVVTTNDEIQQINKEYRNIDKPTDVLSFPY-----EEMPMSPLGSIVVSQDLVIAKA 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 LG E+ L IHG LHLLGYDH Sbjct: 83 KELGHAQEDEFTLLFIHGLLHLLGYDH 109 >gi|260587672|ref|ZP_05853585.1| putative metalloprotease [Blautia hansenii DSM 20583] gi|331084038|ref|ZP_08333145.1| hypothetical protein HMPREF0992_02069 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541937|gb|EEX22506.1| putative metalloprotease [Blautia hansenii DSM 20583] gi|330402400|gb|EGG81970.1| hypothetical protein HMPREF0992_02069 [Lachnospiraceae bacterium 6_1_63FAA] Length = 164 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 15/126 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFA------SSDGC-----SSL 99 E++LV T + I+ N E+R ID+ T+VLSFP TA A D C L Sbjct: 38 TEINLVLTGNEEIQQTNREFRNIDRVTDVLSFPMLDFTAPADFSVAEEDDTCFHPESGEL 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDI++ ++ +A G LI H LHL+GYDH++ ++A ME + IL Sbjct: 98 ILGDIMICIPRMQEQAESYGHGQIREFAFLIAHSMLHLMGYDHMEPEEAKEMERKQEEIL 157 Query: 160 EDLGIN 165 LGI Sbjct: 158 ASLGIT 163 >gi|288574806|ref|ZP_06393163.1| protein of unknown function UPF0054 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570547|gb|EFC92104.1| protein of unknown function UPF0054 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 165 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 7/151 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGY--FVKENIVELSLVFTDSHRIE 68 + L+I + N GD L E V + +S L + + + + V +S+ D I Sbjct: 1 MKLEIGISNDE-GDPRPSAILDEEVLSLCISQLFDEVWPQWRMRDSVSISIATVDEETIR 59 Query: 69 TLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D T+VLSFP F+ + + L LGD+V+ I+ A + ++ Sbjct: 60 QLNNSYRGCDSSTDVLSFPQWEDGVFSPPEEWTELPLGDVVICTSIVNRNAEERNESYDR 119 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + ++ H LHLLG+DH + M L+ Sbjct: 120 EMALMVFHSVLHLLGWDHDTQEKEAAMWSLQ 150 >gi|256827192|ref|YP_003151151.1| hypothetical protein Ccur_07650 [Cryptobacterium curtum DSM 15641] gi|256583335|gb|ACU94469.1| conserved hypothetical protein TIGR00043 [Cryptobacterium curtum DSM 15641] Length = 157 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 59/119 (49%), Gaps = 10/119 (8%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------GCSSLM 100 K E+S+ F D RI LN YRG PT+VLSF D G Sbjct: 32 KPASTEVSISFVDDDRIAELNEAYRGKVGPTDVLSFECDGYDDDFSVNNEADQVGEIPYE 91 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDIV+A ++ E + + G + L+ HG LHL GYDH+ +++A VME E +L Sbjct: 92 LGDIVVAVDVAERQTALFGTTLAEEIELLVCHGLLHLCGYDHMVEEEAQVMEAREDELL 150 >gi|309388931|gb|ADO76811.1| protein of unknown function UPF0054 [Halanaerobium praevalens DSM 2228] Length = 143 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 8/110 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S+ F +I+ LN +YR D T+VLSFP + +LGDI+++ +I +A Sbjct: 40 EVSIAFVTKAKIKELNNDYRDKDSVTDVLSFP--------MDAEVLGDIIISAQIASEQA 91 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L +L +HG LHL GYDH ++ M E +L LGI+ Sbjct: 92 QEYKHSLKRELAYLTVHGMLHLFGYDHHGQEEKNEMRQKEERVLTQLGIS 141 >gi|302874331|ref|YP_003842964.1| hypothetical protein Clocel_1447 [Clostridium cellulovorans 743B] gi|307689402|ref|ZP_07631848.1| putative metalloprotease [Clostridium cellulovorans 743B] gi|302577188|gb|ADL51200.1| protein of unknown function UPF0054 [Clostridium cellulovorans 743B] Length = 166 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 17/126 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----------------TAFASSD-GCSS 98 E+S+++ D+ I +N + R IDK T+VLSFP +F D Sbjct: 39 EISIIYVDNETIRNINSDTRKIDKVTDVLSFPMLDYPKGQVYKNTYEDQSFHVVDLDDGY 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGDIVL+ E + ++ G + +L+IH LHLLGYDH+++++ +M E +I Sbjct: 99 LVLGDIVLSLEKAKEQSEEYGHSYLRETCYLVIHSVLHLLGYDHMEEEEKGIMRKREETI 158 Query: 159 LEDLGI 164 L + I Sbjct: 159 LSEFSI 164 >gi|227529164|ref|ZP_03959213.1| metal-dependent hydrolase [Lactobacillus vaginalis ATCC 49540] gi|227350889|gb|EEJ41180.1| metal-dependent hydrolase [Lactobacillus vaginalis ATCC 49540] Length = 159 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---------PTAFASSDGCS-SLMLGDI 104 E+S+ ++ I LN YR +D+ T+VLSF P A + LGD+ Sbjct: 38 TEMSVTLVNNPEIRELNSRYRHVDRATDVLSFAAEESGNETPIILAPELAAELPVNLGDL 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + + +A LG F+ L L++HGFLHL GYDH +D M L+R IL+ G+ Sbjct: 98 FISIDKVAEQAKFLGHSFDRELGFLVVHGFLHLNGYDHEQPEDEKKMFTLQREILDQYGL 157 Query: 165 N 165 Sbjct: 158 K 158 >gi|308235188|ref|ZP_07665925.1| putative metalloprotease [Gardnerella vaginalis ATCC 14018] gi|311114843|ref|YP_003986064.1| putative metalloprotease [Gardnerella vaginalis ATCC 14019] gi|310946337|gb|ADP39041.1| probable metalloprotease [Gardnerella vaginalis ATCC 14019] Length = 175 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D I +L+ ++ ++ PT+V+SFP S D S MLGD+V+ + Sbjct: 36 DLSITFVDPEPIASLHEKWMDLEGPTDVMSFPMDELTPGSDDKVSEGMLGDLVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH ++ M GL+R +L Sbjct: 96 QQAAAAGHSTMEEMLLLTIHGMLHLLGYDHTTPQEEKQMFGLQRQLL 142 >gi|284050359|ref|ZP_06380569.1| putative metalloprotease [Arthrospira platensis str. Paraca] Length = 186 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 21/138 (15%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---------PTAFASSDG 95 +KGY ELSL TD I+ N +YR +D+ T+VLSF P S Sbjct: 53 AKGY-------ELSLRLTDDREIQAFNAQYRQLDQATDVLSFAALETSLVMPAEHLSLHP 105 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 C LGDI+++ E +A L L HG LHLLG+DH DD+ M + Sbjct: 106 C---YLGDIIISVETAFRQAQQARHNLTTELAWLTSHGLLHLLGWDHPDDRSLTRMLEQQ 162 Query: 156 RSILE--DLGINDPYEVD 171 +++L+ +L I Y D Sbjct: 163 KALLQKVNLQIGSGYAWD 180 >gi|34556974|ref|NP_906789.1| putative metalloprotease [Wolinella succinogenes DSM 1740] gi|46577355|sp|Q7MSD7|RRMF_WOLSU RecName: Full=Probable rRNA maturation factor gi|34482689|emb|CAE09689.1| conserved hypothetical protein [Wolinella succinogenes] Length = 140 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 5/91 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L+ D + +N E+RGIDK T+VLSFP +G L LG I+L+ + + EA Sbjct: 28 EVELILLDDEAMRKINQEHRGIDKSTDVLSFPL-----EGGDFLPLGSILLSIDRVRAEA 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + G E L IHG LHLLGYDH D+ Sbjct: 83 ELRGHSIEAEAALLFIHGMLHLLGYDHEYDQ 113 >gi|254455702|ref|ZP_05069131.1| conserved hypothetical protein TIGR00043 [Candidatus Pelagibacter sp. HTCC7211] gi|207082704|gb|EDZ60130.1| conserved hypothetical protein TIGR00043 [Candidatus Pelagibacter sp. HTCC7211] Length = 153 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 5/116 (4%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS-LMLGDIVL 106 Y KE V L+L+ +++ I+ LN ++R +K T++LSFP F + S LGDI++ Sbjct: 37 YLNKE--VSLTLLLSNNKGIKKLNKDFRNKNKSTDILSFP--FNNKIKISKKTYLGDIII 92 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +Y + K F++ ++ + IHGFLHLL +DH+ +KD M E I + + Sbjct: 93 SYNFMNKPRTQNLKSFQDKVIKIFIHGFLHLLNFDHIKNKDYKNMLREENRIYKSI 148 >gi|194017716|ref|ZP_03056326.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] gi|194010616|gb|EDW20188.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] Length = 159 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TAFASSDGCSSLMLGDIVL 106 E+S+ + I +N EYRG D PT+V+SF +D + LGDI++ Sbjct: 39 AEVSVTIVSNEEIHQINKEYRGKDAPTDVISFALEEEGEGEIEIIGADDIPPV-LGDIII 97 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + + + +A G F L L IHGFLHLLG+DH+ ++D M + IL+D G++ Sbjct: 98 SVDRTKEQAEEYGHSFMRELGFLTIHGFLHLLGFDHMTEEDEKEMFAKQTKILDDYGLS 156 >gi|157693031|ref|YP_001487493.1| putative metalloprotease [Bacillus pumilus SAFR-032] gi|166987419|sp|A8FFB6|RRMF_BACP2 RecName: Full=Probable rRNA maturation factor gi|157681789|gb|ABV62933.1| possible metal-dependent hydrolase [Bacillus pumilus SAFR-032] Length = 159 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 9/119 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TAFASSDGCSSLMLGDIVL 106 E+S+ + I +N EYRG D PT+V+SF +D + LGDI++ Sbjct: 39 AEVSVTIVSNEEIHQINKEYRGKDAPTDVISFALEEEGEGEIEIIGADDIPPV-LGDIII 97 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + + + +A G F L L IHGFLHLLG+DH+ ++D M + IL+D G++ Sbjct: 98 SVDRTKEQAEEYGHSFMRELGFLTIHGFLHLLGFDHMTEEDEKEMFAKQTKILDDYGLS 156 >gi|291279469|ref|YP_003496304.1| hypothetical protein DEFDS_1079 [Deferribacter desulfuricans SSM1] gi|290754171|dbj|BAI80548.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 154 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-SSLMLGDIVLAYEIIEI 113 E+SL+ T+S I+ LN +R D PT+VLSFP +D C +LGDIV+ + +E Sbjct: 42 AEISLLLTNSEEIKILNKNFRDKDYPTDVLSFPM----NDECLEDSILGDIVINLDKVEE 97 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILE 160 + +E L L IHG LHLLGYDH +++++ +M L+ IL+ Sbjct: 98 YSKENDIPYERELAFLYIHGLLHLLGYDHEINEEEEKIMFDLQEDILK 145 >gi|47459183|ref|YP_016045.1| putative metal binding protein [Mycoplasma mobile 163K] gi|59799113|sp|Q6KHU4|RRMF_MYCMO RecName: Full=Probable rRNA maturation factor gi|47458512|gb|AAT27834.1| putative metal binding protein [Mycoplasma mobile 163K] Length = 152 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 3/132 (2%) Query: 36 FAKAVSNLISK-GYFVKENI-VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS- 92 + K N++ + F KE + +EL L D+ I+ ++ +Y DK T+VLSFP+ A+ Sbjct: 17 YKKDFQNILDEIALFFKEKLPLELDLNIVDNILIKKISKQYYKKDKETDVLSFPSELANM 76 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + +G+I L YE + ++A + +L HG +HL GYDHV + +A M Sbjct: 77 KNALGFFHIGEIFLNYEKVILQAKEYNHSLKREFCYLFTHGIIHLYGYDHVKENEAKEMN 136 Query: 153 GLERSILEDLGI 164 + SI++ L I Sbjct: 137 AIVESIMQKLNI 148 >gi|167755644|ref|ZP_02427771.1| hypothetical protein CLORAM_01159 [Clostridium ramosum DSM 1402] gi|237734392|ref|ZP_04564873.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704583|gb|EDS19162.1| hypothetical protein CLORAM_01159 [Clostridium ramosum DSM 1402] gi|229382622|gb|EEO32713.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 153 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 3/130 (2%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 +++ N +K ++E++ ELS + D +I +N EYR ID+ T+V+SF Sbjct: 23 RSIINEAAKQLGIEEDL-ELSCILVDDSKIHEINKEYRKIDRATDVISFALEDNEQFYVP 81 Query: 98 SL--MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + +GDI ++ + +++A G + + + L HG LHLLG+DH+ ++D M ++ Sbjct: 82 GMPRSIGDIFISVDHAKVQAEEYGHDLKREMCFLFTHGLLHLLGFDHMIEEDEIQMIAMQ 141 Query: 156 RSILEDLGIN 165 +SIL+ L I Sbjct: 142 KSILDALNIT 151 >gi|121603421|ref|YP_980750.1| hypothetical protein Pnap_0508 [Polaromonas naphthalenivorans CJ2] gi|145558831|sp|A1VJK1|RRMF_POLNA RecName: Full=Probable rRNA maturation factor gi|120592390|gb|ABM35829.1| protein of unknown function UPF0054 [Polaromonas naphthalenivorans CJ2] Length = 151 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 7/115 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ + + LN +YR D TNVL+F A + D+VL ++ E Sbjct: 42 AEITVRIVGAEEGQALNRDYRAKDYATNVLTFDYTQAP------YVTADLVLCAPVVAKE 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 A K + H HL++HG LH GYDH ++DA ME LE IL LG ++PY Sbjct: 96 AQDNQKTLQAHYAHLLVHGTLHAQGYDHETGEEDAEEMEALEIEILAGLGFDNPY 150 >gi|317508757|ref|ZP_07966408.1| hypothetical protein HMPREF9336_02780 [Segniliparus rugosus ATCC BAA-974] gi|316252951|gb|EFV12370.1| hypothetical protein HMPREF9336_02780 [Segniliparus rugosus ATCC BAA-974] Length = 180 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 6/112 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAY 108 ELS++ D+ + L+ ++ + PT+VLSFP A DG + +LGDIVL Sbjct: 35 AELSMLLVDTSTMAHLHQQWMNLPGPTDVLSFPMDDAEPDGRPDAVEAAQTLLGDIVLCP 94 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ +A G E+ L+ L +HG LH+LGYDH + ++ M GL+ ++E Sbjct: 95 EVAAEQAEAAGHSTEHELIVLTVHGVLHILGYDHAEPEEEAEMFGLQGKLVE 146 >gi|289642692|ref|ZP_06474832.1| protein of unknown function UPF0054 [Frankia symbiont of Datisca glomerata] gi|289507522|gb|EFD28481.1| protein of unknown function UPF0054 [Frankia symbiont of Datisca glomerata] Length = 158 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 17/152 (11%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 +A E+ + DE+ L L V N + ELS++ + +E L+ Y Sbjct: 5 VANESGVEADEVTLTALARFVLDTMKVN----------PLAELSVMLVEQAAMEELHVRY 54 Query: 75 RGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 G + PT+VL+FP +A S + +L+LGDIVL E+ +A G E+ + Sbjct: 55 MGEEGPTDVLAFPQDDAFDPSAPDSGEDDPTLLLGDIVLCPEVARRQAAKAGHSTEHEMH 114 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L HG LHLLGYDH + + M ++ +L Sbjct: 115 LLCTHGILHLLGYDHAEPDEEREMWAVQSRLL 146 >gi|315636838|ref|ZP_07892063.1| metalloprotease [Arcobacter butzleri JV22] gi|315478892|gb|EFU69600.1| metalloprotease [Arcobacter butzleri JV22] Length = 140 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+ + I+ LN EYR IDKPT+VLSFP F D +LG IV++ + ++ +A Sbjct: 28 DIELIVVKNDEIQELNKEYRNIDKPTDVLSFPMNFEVIDMP---LLGSIVISTDFVQEKA 84 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 F L IHG LHLLG+DH Sbjct: 85 KEFKHSFNEEFTLLFIHGLLHLLGFDH 111 >gi|260436620|ref|ZP_05790590.1| putative metalloprotease [Synechococcus sp. WH 8109] gi|260414494|gb|EEX07790.1| putative metalloprotease [Synechococcus sp. WH 8109] Length = 172 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIE 112 + L L FTD I LN +R PT+VLSF + D S+ LGDIV++ E Sbjct: 57 LSLGLRFTDDAAIADLNSAWRQKTGPTDVLSFAALDDAGDWMEGPSIELGDIVVSLETAR 116 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +A G L L+ HG LHLLG+DH D+ M L+ +L D Sbjct: 117 RQAQEQGHSLNRELRWLVSHGLLHLLGWDHPDEDSLAAMLALQERLLGD 165 >gi|157737127|ref|YP_001489810.1| putative metalloprotease [Arcobacter butzleri RM4018] gi|167016839|sp|A8ET67|RRMF_ARCB4 RecName: Full=Probable rRNA maturation factor gi|157698981|gb|ABV67141.1| conserved hypothetical protein [Arcobacter butzleri RM4018] Length = 140 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+ + I+ LN EYR IDKPT+VLSFP F D +LG IV++ + ++ +A Sbjct: 28 DIELIVVKNDEIQELNKEYRNIDKPTDVLSFPMNFEVIDMP---LLGSIVISTDFVQEKA 84 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 F L IHG LHLLG+DH Sbjct: 85 KEFKHSFNEEFTLLFIHGLLHLLGFDH 111 >gi|312144004|ref|YP_003995450.1| protein of unknown function UPF0054 [Halanaerobium sp. 'sapolanicus'] gi|311904655|gb|ADQ15096.1| protein of unknown function UPF0054 [Halanaerobium sp. 'sapolanicus'] Length = 143 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 8/110 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S+ F + I+ LN +YR ID T+VLSFP +LGDI+++ E +A Sbjct: 40 EVSVAFVSNEEIKKLNKKYRNIDAATDVLSFP--------IDDEVLGDIIISSERAVSQA 91 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + L +L +HG LHL GYDH ++ M E IL +L ++ Sbjct: 92 EEYGHSLKRELAYLTVHGILHLFGYDHHGQEEKNKMRQKEERILTELDLS 141 >gi|119960557|ref|YP_947971.1| metalloprotease [Arthrobacter aurescens TC1] gi|166227688|sp|A1R6V9|RRMF_ARTAT RecName: Full=Probable rRNA maturation factor gi|119947416|gb|ABM06327.1| putative uncharacterized protein family UPF0054 [Arthrobacter aurescens TC1] Length = 157 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L TL +F + ++ ELS++ D +E L Sbjct: 1 MSIEVNNESGVVVDEAQLVTLSRFIFER---------LYIHPQ-AELSILLVDEPAMEKL 50 Query: 71 NFEYRGIDKP--TNVLSFP----TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + E +D+P T+VLS P T MLGDI + ++ E++A G ++ Sbjct: 51 HIEL--MDEPGATDVLSVPMDELTPGTPEKPTPQGMLGDIAICPQVAEVQARNAGHPTQD 108 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDPYEV 170 ++ L HG LHLLG+DH + ++ M GL+R +L + LG + P E Sbjct: 109 EMLLLTTHGILHLLGFDHAEPEEKEEMFGLQRELLSEFLGKDAPMET 155 >gi|257471496|ref|ZP_05635495.1| hypothetical protein BaphL_02205 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|311086173|gb|ADP66255.1| hypothetical protein CWO_02330 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086746|gb|ADP66827.1| hypothetical protein CWQ_02365 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087334|gb|ADP67414.1| hypothetical protein CWS_02310 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087838|gb|ADP67917.1| hypothetical protein CWU_02885 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 88 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SFP F + +LGD+VL IIE E+ K E+H H+ IHG LHLLGYDH Sbjct: 1 MSFP--FNKFIKINYKLLGDLVLCKNIIEKESLKYNKSLESHWAHITIHGTLHLLGYDHQ 58 Query: 144 DDKDACVMEGLERSILEDLGINDPY 168 ++K+A +ME LE I+ L P+ Sbjct: 59 NNKEADIMERLENKIMLSLNYKKPH 83 >gi|307298543|ref|ZP_07578346.1| protein of unknown function UPF0054 [Thermotogales bacterium mesG1.Ag.4.2] gi|306915708|gb|EFN46092.1| protein of unknown function UPF0054 [Thermotogales bacterium mesG1.Ag.4.2] Length = 142 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 13/108 (12%) Query: 40 VSNLISKGYFVKENIVE-----LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 +SN++ K VK + E L+L+FTD I ++N E+R D+PT+VLSF Sbjct: 18 ISNIVEK--VVKAELGERKIGMLNLLFTDDSEIRSINKEFRHRDEPTDVLSFQY------ 69 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 G ++GDIV++ E I +A G FE L +++IHG LH+LG+ H Sbjct: 70 GLEEEIVGDIVISLERISEQAGEFGNSFEEELYYILIHGVLHVLGHTH 117 >gi|116492868|ref|YP_804603.1| metal-dependent hydrolase [Pediococcus pentosaceus ATCC 25745] gi|122265668|sp|Q03F61|RRMF_PEDPA RecName: Full=Probable rRNA maturation factor gi|116103018|gb|ABJ68161.1| Predicted metal-dependent hydrolase [Pediococcus pentosaceus ATCC 25745] Length = 156 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 8/118 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML--------GDIVL 106 E+S+ + I +N EYR +D+PT+V+SF A D + GD+++ Sbjct: 37 TEISVTLMHNDEIHQINKEYRNVDRPTDVISFAINDADEDIIMDPEMAEEIPANIGDLMI 96 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + + +A LG +E L L +HGFLHL GYDH++ +D M L++ I+ G+ Sbjct: 97 SVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMEKEDQEKMFPLQKEIMNAYGL 154 >gi|309775531|ref|ZP_07670531.1| metalloprotease [Erysipelotrichaceae bacterium 3_1_53] gi|308916625|gb|EFP62365.1| metalloprotease [Erysipelotrichaceae bacterium 3_1_53] Length = 155 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVLAYEIIE 112 S++F I +N EYR ID+PT+V+SF A S+ +M LGDI + E + Sbjct: 41 SVIFVTKDAIHEINREYRKIDRPTDVISF--ALKDSEDSYEVMEGGEELGDIFINTEAVV 98 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +A G + L HG LHLLGYDH+ ++ VM L+ IL+D+ Sbjct: 99 SQAADYGHTLRREVCFLFTHGLLHLLGYDHMTPEEEAVMFQLQDVILDDI 148 >gi|227890900|ref|ZP_04008705.1| metal-dependent hydrolase [Lactobacillus salivarius ATCC 11741] gi|227867309|gb|EEJ74730.1| metal-dependent hydrolase [Lactobacillus salivarius ATCC 11741] Length = 159 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 11/122 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----------LGD 103 E+S+ ++ +I +N +YRG+DK T+V+SF D ++ +GD Sbjct: 37 TEMSVTLMNNEQIHEINLKYRGVDKATDVISFAIEEDDPDELPIILPDDVDFEEPKNIGD 96 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++++ + ++ +A L + L L +HGFLHL GYDH+ +D VM L+R IL+ G Sbjct: 97 MMISMDKVKEQAEYLDHSEDRELGFLTVHGFLHLNGYDHMKAEDEKVMFKLQRDILDAYG 156 Query: 164 IN 165 + Sbjct: 157 LK 158 >gi|145223294|ref|YP_001133972.1| putative metalloprotease [Mycobacterium gilvum PYR-GCK] gi|315443754|ref|YP_004076633.1| hypothetical protein Mspyr1_21440 [Mycobacterium sp. Spyr1] gi|189039754|sp|A4T2C0|RRMF_MYCGI RecName: Full=Probable rRNA maturation factor gi|145215780|gb|ABP45184.1| protein of unknown function UPF0054 [Mycobacterium gilvum PYR-GCK] gi|315262057|gb|ADT98798.1| conserved hypothetical protein TIGR00043 [Mycobacterium sp. Spyr1] Length = 178 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 S L+S FV + ELS+V D+ + L+ + + PT+V+SFP G Sbjct: 16 SELVSVARFVIRKMDVNPAAELSMVLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGG 75 Query: 96 ------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 MLGDIVL E +A G L L +HG LHLLGYDH + + Sbjct: 76 RPDTPEPGPSMLGDIVLCPEFAAKQAADAGHTLGQELALLTVHGVLHLLGYDHAEPDEEK 135 Query: 150 VMEGLERSILED 161 M L+R +LE+ Sbjct: 136 EMFALQRELLEE 147 >gi|300176925|emb|CBK25494.2| unnamed protein product [Blastocystis hominis] Length = 166 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIVLA 107 V+L++ + S +I LN YR ID PT++LSFPT + S+ + LGDI +A Sbjct: 22 VDLTISYITSPQIRELNRVYRNIDSPTDILSFPTHTFITNPGYLPSEKNTIRSLGDIYIA 81 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + +++ + H L HG HLLG+DHV D+D M E+ +L++ Sbjct: 82 TDYVDLYCKENKIDRFEHFNVLYAHGISHLLGFDHVKDEDYIKMSAFEKKLLKE 135 >gi|221369606|ref|YP_002520702.1| metalloprotease RHOS4_36330 [Rhodobacter sphaeroides KD131] gi|221162658|gb|ACM03629.1| metalloprotease RHOS4_36330 [Rhodobacter sphaeroides KD131] Length = 160 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 13/125 (10%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-------------GCSSLMLGD 103 L ++ D RI LN +R KPTNVLS+P+ +S+ LGD Sbjct: 36 LVVMGCDDARIAELNGAFRQKGKPTNVLSWPSEERASEEPGVAPEPPEPGDPEDPEPLGD 95 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + +A+E + EA GK +H+ HL++HG LHLLGYDHV++ D +ME E IL LG Sbjct: 96 VAIAFETCQREAAEQGKPVADHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLG 155 Query: 164 INDPY 168 + DPY Sbjct: 156 VPDPY 160 >gi|312140288|ref|YP_004007624.1| hypothetical protein REQ_29270 [Rhodococcus equi 103S] gi|325677054|ref|ZP_08156724.1| metalloprotease [Rhodococcus equi ATCC 33707] gi|311889627|emb|CBH48944.1| conserved hypothetical protein [Rhodococcus equi 103S] gi|325552125|gb|EGD21817.1| metalloprotease [Rhodococcus equi ATCC 33707] Length = 180 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 15/133 (11%) Query: 42 NLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------T 88 +LIS FV + ELS+V DS + L+ + + PT+V+SFP Sbjct: 17 DLISVARFVIARMDVHPAAELSMVLVDSSTMADLHMRWMDLPGPTDVMSFPMDELEPGGR 76 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 A G S MLGDIVL +A G ++ L L +HG LHLLGYDH + ++ Sbjct: 77 PDAPEPGPS--MLGDIVLCPSFALEQAEKAGHSLDHELALLTVHGVLHLLGYDHAEPEEE 134 Query: 149 CVMEGLERSILED 161 M GL+ +L D Sbjct: 135 KEMFGLQNQLLAD 147 >gi|77465599|ref|YP_355102.1| hypothetical protein RSP_3598 [Rhodobacter sphaeroides 2.4.1] gi|126464038|ref|YP_001045151.1| hypothetical protein Rsph17029_3283 [Rhodobacter sphaeroides ATCC 17029] gi|123590065|sp|Q3IW83|RRMF_RHOS4 RecName: Full=Probable rRNA maturation factor gi|77390017|gb|ABA81201.1| Protein of unknown function UPF0054 [Rhodobacter sphaeroides 2.4.1] gi|126105849|gb|ABN78379.1| protein of unknown function UPF0054 [Rhodobacter sphaeroides ATCC 17029] Length = 167 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 13/125 (10%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-------------GCSSLMLGD 103 L ++ D RI LN +R KPTNVLS+P+ +S+ LGD Sbjct: 43 LVVMGCDDARIAELNGAFRQKGKPTNVLSWPSEERASEEPGMAPEPPEPGDPEDPEPLGD 102 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + +A+E + EA GK +H+ HL++HG LHLLGYDHV++ D +ME E IL LG Sbjct: 103 VAIAFETCQREAAEQGKPVTDHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLG 162 Query: 164 INDPY 168 + DPY Sbjct: 163 VPDPY 167 >gi|332561271|ref|ZP_08415589.1| hypothetical protein RSWS8N_19539 [Rhodobacter sphaeroides WS8N] gi|332275069|gb|EGJ20385.1| hypothetical protein RSWS8N_19539 [Rhodobacter sphaeroides WS8N] Length = 160 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 13/125 (10%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-------------GCSSLMLGD 103 L ++ D RI LN +R KPTNVLS+P+ +S+ LGD Sbjct: 36 LVVMGCDDARIAELNGAFRQKGKPTNVLSWPSEERASEEPGVAPEPPEPGDPDDPEPLGD 95 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + +A+E + EA GK +H+ HL++HG LHLLGYDHV++ D +ME E IL LG Sbjct: 96 VAIAFETCQREAAEQGKPVTDHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLG 155 Query: 164 INDPY 168 + DPY Sbjct: 156 VPDPY 160 >gi|71065192|ref|YP_263919.1| hypothetical protein Psyc_0626 [Psychrobacter arcticus 273-4] gi|123649317|sp|Q4FU23|RRMF_PSYA2 RecName: Full=Probable rRNA maturation factor gi|71038177|gb|AAZ18485.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 206 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAY 108 +E I L + TD LN E R D TN+LS+P+ ++ +L LG++V+ + Sbjct: 85 QEKIKALDIYITDEDEGRELNLEARQKDYATNILSYPSDLPAAIIGLMPTLPLGELVICH 144 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDP 167 ++ EA K H+ HL++HG LHLLG+DH + + ME E IL L I +P Sbjct: 145 AVMVREAAEQNKAAVQHINHLLVHGILHLLGFDHELGQAEQDEMERFEIEILAGLNIPNP 204 Query: 168 Y 168 Y Sbjct: 205 Y 205 >gi|297243341|ref|ZP_06927274.1| metal-dependent hydrolase [Gardnerella vaginalis AMD] gi|296888588|gb|EFH27327.1| metal-dependent hydrolase [Gardnerella vaginalis AMD] Length = 186 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D I L+ + ++ PT+V+SFP S + S MLGD+V+ + + Sbjct: 36 DLSITFVDPEPIACLHERWMNLEGPTDVMSFPMDELTPGSDEKVSEGMLGDLVICPWVAQ 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH ++ M GL+R ++ Sbjct: 96 QQALAAGHSTMEEMLLLTIHGILHLLGYDHTTPEEEKQMFGLQRQLM 142 >gi|229552358|ref|ZP_04441083.1| possible metal-dependent hydrolase [Lactobacillus rhamnosus LMS2-1] gi|258539729|ref|YP_003174228.1| metalloprotease [Lactobacillus rhamnosus Lc 705] gi|229314340|gb|EEN80313.1| possible metal-dependent hydrolase [Lactobacillus rhamnosus LMS2-1] gi|257151405|emb|CAR90377.1| Metalloprotease [Lactobacillus rhamnosus Lc 705] Length = 152 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 12/121 (9%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML--------GDI 104 N E+S+ I+ +N EYR D+ T+V+SF A DG L L GD+ Sbjct: 35 NDTEMSITIVGDDAIQKINREYRDTDRATDVISF----AIEDGEDDLPLMPGMAKNIGDL 90 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + A G FE L + ++HGFLHL GYDH+ +D VM L++ IL G+ Sbjct: 91 FIDPLTVRRHAKEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKILTAYGL 150 Query: 165 N 165 Sbjct: 151 T 151 >gi|326381614|ref|ZP_08203308.1| metal-binding heat shock protein [Gordonia neofelifaecis NRRL B-59395] gi|326199861|gb|EGD57041.1| metal-binding heat shock protein [Gordonia neofelifaecis NRRL B-59395] Length = 180 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAY 108 ELS+ DS + L+ ++ + PT+V+SFP +D MLGDIVL Sbjct: 35 AELSIQLIDSESMAELHMQWMDLPGPTDVMSFPMDELTPGGRPDADDPGPAMLGDIVLCP 94 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E +A FE+ + L +HG LHLLG+DH + +D M GL+ I+ Sbjct: 95 EFAGEQAKSQHHSFEHEIAVLTVHGVLHLLGFDHAEPEDEREMFGLQGQII 145 >gi|311742996|ref|ZP_07716804.1| cupin domain protein [Aeromicrobium marinum DSM 15272] gi|311313676|gb|EFQ83585.1| cupin domain protein [Aeromicrobium marinum DSM 15272] Length = 158 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 EL+L D+ I LN ++ G D PT+VLSFP T + LGDI L ++ Sbjct: 35 TELTLRLVDADTIAVLNRQWMGKDGPTDVLSFPMDELTPGRDDEESPEGYLGDIALCPQV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E +A G + + L +HG LHLLGYDH + + M GL+ +L Sbjct: 95 AEQQAPAAGHTTADEVDLLTVHGILHLLGYDHAEPDEHREMFGLQGRLL 143 >gi|199599322|ref|ZP_03212720.1| Predicted metal-dependent hydrolase [Lactobacillus rhamnosus HN001] gi|258508548|ref|YP_003171299.1| metalloprotease [Lactobacillus rhamnosus GG] gi|199589761|gb|EDY97869.1| Predicted metal-dependent hydrolase [Lactobacillus rhamnosus HN001] gi|257148475|emb|CAR87448.1| Metalloprotease [Lactobacillus rhamnosus GG] gi|259649855|dbj|BAI42017.1| conserved hypothetical protein [Lactobacillus rhamnosus GG] Length = 152 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 12/121 (9%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML--------GDI 104 N E+S+ I+ +N EYR D+ T+V+SF A DG L L GD+ Sbjct: 35 NDTEMSITIVGDDAIQKINREYRDTDRATDVISF----AIEDGEDDLPLLPGMAKNIGDL 90 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + A G FE L + ++HGFLHL GYDH+ +D VM L++ IL G+ Sbjct: 91 FIDPLTVRRHAKEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKILTAYGL 150 Query: 165 N 165 Sbjct: 151 T 151 >gi|254411860|ref|ZP_05025636.1| conserved hypothetical protein TIGR00043, putative [Microcoleus chthonoplastes PCC 7420] gi|196181582|gb|EDX76570.1| conserved hypothetical protein TIGR00043, putative [Microcoleus chthonoplastes PCC 7420] Length = 169 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 7/119 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAY 108 EL+L TD I+ LN ++R ++PT+VLSF P S+ LGD+V++ Sbjct: 50 ELTLRLTDDAEIQALNSQFRHKNQPTDVLSFAALEVDSPQIPPDMQAAESVYLGDLVISV 109 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 E +A G L L HG LHLLG+DH D++ M ++++L+ + + P Sbjct: 110 ETAYRQAQHQGHPLSIELAWLATHGLLHLLGWDHPDEESLQRMLNQQQALLQIVNLTLP 168 >gi|86609356|ref|YP_478118.1| hypothetical protein CYB_1900 [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501846|sp|Q2JKD4|RRMF_SYNJB RecName: Full=Probable rRNA maturation factor gi|86557898|gb|ABD02855.1| conserved hypothetical protein TIGR00043 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 163 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 5/99 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-----AFASSDGCSSLMLGDIVL 106 + ELSL T I LN E+R +D+PT+VL+F F D +LGDIV+ Sbjct: 36 QEPCELSLCLTSDEHIRQLNREFRHLDEPTDVLAFAAQEMLAPFGIQDITGVRLLGDIVI 95 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 + +A G L L HG LHLLG+DH D+ Sbjct: 96 SVPTARAQAKAQGHRLSQELAWLASHGLLHLLGWDHPDE 134 >gi|224542132|ref|ZP_03682671.1| hypothetical protein CATMIT_01307 [Catenibacterium mitsuokai DSM 15897] gi|224524969|gb|EEF94074.1| hypothetical protein CATMIT_01307 [Catenibacterium mitsuokai DSM 15897] Length = 155 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--MLGDIVLAYE 109 E+ VE+S V D RI +N EYR ID+ T+V+SF + LGDI ++ + Sbjct: 36 EDDVEVSCVLVDDERIHEINREYRHIDRSTDVISFAMEDNDQFYVEGMPRTLGDIFISVD 95 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A G + L HG LHLLGYDH+ D+ M GL+ IL L I Sbjct: 96 HAKKQAEEYGHSLRREMCFLFTHGILHLLGYDHMTDEQEKEMFGLQDEILGALSI 150 >gi|283783326|ref|YP_003374080.1| metalloprotein, YbeY family [Gardnerella vaginalis 409-05] gi|283441013|gb|ADB13479.1| metalloprotein, YbeY family [Gardnerella vaginalis 409-05] Length = 186 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D I L+ + ++ PT+V+SFP S + S MLGD+V+ + + Sbjct: 36 DLSITFVDPEPIACLHERWMNLEGPTDVMSFPMDELTPGSDEKVSEGMLGDLVICPWVAQ 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH ++ M GL+R ++ Sbjct: 96 QQALAAGHSTMEEMLLLTIHGILHLLGYDHTTPEEEKQMFGLQRQLM 142 >gi|210623872|ref|ZP_03294107.1| hypothetical protein CLOHIR_02058 [Clostridium hiranonis DSM 13275] gi|210153298|gb|EEA84304.1| hypothetical protein CLOHIR_02058 [Clostridium hiranonis DSM 13275] Length = 153 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 2/112 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEI 113 ++S+ F D+ I LN ++RG+D+ T+VLSFP + + LGDIV++ E Sbjct: 40 DISISFVDNKEIHELNKQFRGVDRATDVLSFPMLSDEFEDVEYEEMSLGDIVVSLERALE 99 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ G FE + L+ H HLLGYDH D++ M E ++L L I Sbjct: 100 QSIEYGHSFEREVCFLVCHSMFHLLGYDHDTDENTREMREKEEAVLTKLNIT 151 >gi|167767292|ref|ZP_02439345.1| hypothetical protein CLOSS21_01811 [Clostridium sp. SS2/1] gi|167711267|gb|EDS21846.1| hypothetical protein CLOSS21_01811 [Clostridium sp. SS2/1] gi|291559398|emb|CBL38198.1| conserved hypothetical protein TIGR00043 [butyrate-producing bacterium SSC/2] Length = 170 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 15/119 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---------------FASSDGCSSLM 100 E++L+ T++ I +N E R ID+PT+VLSFP A A + Sbjct: 39 EVNLMLTNNETIHAINKEQREIDRPTDVLSFPMAEYEEPADFSKIEEDPMAFDPESGEFL 98 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDIV++ + + +A G E LI H LHL GYDH+++++ ME + IL Sbjct: 99 LGDIVISMDKVWEQAENYGHSREREYAFLIAHSMLHLFGYDHMEEEERKDMEKRQEEIL 157 >gi|255656420|ref|ZP_05401829.1| hypothetical protein CdifQCD-2_12149 [Clostridium difficile QCD-23m63] gi|296450133|ref|ZP_06891894.1| metal-dependent hydrolase [Clostridium difficile NAP08] gi|296878514|ref|ZP_06902519.1| metal-dependent hydrolase [Clostridium difficile NAP07] gi|296260896|gb|EFH07730.1| metal-dependent hydrolase [Clostridium difficile NAP08] gi|296430321|gb|EFH16163.1| metal-dependent hydrolase [Clostridium difficile NAP07] Length = 153 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEII 111 E+SL F D+ I LN EYRG+D+ T+VLSFP S D LGDIV++ E Sbjct: 40 EVSLSFVDNKEIHELNREYRGVDRVTDVLSFP--LLSDDFEDVELEEESLGDIVVSLERA 97 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ FE + LI H HLLGYDH D++ M E IL L I Sbjct: 98 LEQSIEYNHSFEREVCFLICHSMFHLLGYDHDTDENTKEMREKEEHILNKLNI 150 >gi|294790830|ref|ZP_06755988.1| putative metalloprotease [Scardovia inopinata F0304] gi|294458727|gb|EFG27080.1| putative metalloprotease [Scardovia inopinata F0304] Length = 174 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D + L+ + G++ PT+V+SFP D +LGDI+L ++ Sbjct: 36 DLSIAFIDPQPMAELHVRWMGLEGPTDVMSFPMDQLRPGDEDNRPEGLLGDIILCPQVAS 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++A G ++ L IHG LHLLGYDH + M L+R +L Sbjct: 96 MQAAAAGHSTIEEMMLLTIHGVLHLLGYDHKKPDEEKRMFALQRQLL 142 >gi|148240663|ref|YP_001226050.1| metal-dependent hydrolase [Synechococcus sp. WH 7803] gi|147849202|emb|CAK24753.1| Predicted metal-dependent hydrolase [Synechococcus sp. WH 7803] Length = 200 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEII 111 + L L FT I LN +RG+ +PT+VLSF A S ++L LGDIV++ Sbjct: 70 ISLGLQFTGDQEIAELNGRWRGLPQPTDVLSF-AALESEMPLQQTTTLELGDIVVSVPTA 128 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G E L L+ HG LHLLG+DH D+ M + +L Sbjct: 129 ARQALEQGHSLERELQWLVSHGLLHLLGWDHPDEPTLNAMIACQERLL 176 >gi|313672928|ref|YP_004051039.1| hypothetical protein Calni_0965 [Calditerrivibrio nitroreducens DSM 19672] gi|312939684|gb|ADR18876.1| protein of unknown function UPF0054 [Calditerrivibrio nitroreducens DSM 19672] Length = 149 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 10/106 (9%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEI 110 N E+SLV TD ++ +N YR ID T+VLSFP +DG S +LGDIV++Y+ Sbjct: 38 NTAEISLVITDDEEMKEINRLYRKIDSTTDVLSFPI----NDGKDIKSNILGDIVISYDK 93 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDH----VDDKDACVME 152 + ++ E + L IHG LHLLGYDH VD+K+ M+ Sbjct: 94 AKSQSVENECTIEEEIAFLFIHGLLHLLGYDHDSSEVDEKEMFEMQ 139 >gi|171743045|ref|ZP_02918852.1| hypothetical protein BIFDEN_02170 [Bifidobacterium dentium ATCC 27678] gi|283455944|ref|YP_003360508.1| hypothetical protein BDP_1043 [Bifidobacterium dentium Bd1] gi|171278659|gb|EDT46320.1| hypothetical protein BIFDEN_02170 [Bifidobacterium dentium ATCC 27678] gi|283102578|gb|ADB09684.1| Conserved hypothetical protein [Bifidobacterium dentium Bd1] Length = 181 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 11/133 (8%) Query: 35 VFAKAVSNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 V K SNL G +V + + +L+++F D I L+ + ++ PT+V+SFP Sbjct: 13 VDGKVFSNL---GVWVMDQMRVSTQSDLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMD 69 Query: 89 AFASSDGCSSL--MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 DG + + +LGDIV+ + +A G ++ L IHG LHLLGYDHV + Sbjct: 70 ELRPGDGRTVMEGVLGDIVICPWVAAQQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPE 129 Query: 147 DACVMEGLERSIL 159 M GL+R +L Sbjct: 130 QERQMFGLQRQLL 142 >gi|298252735|ref|ZP_06976529.1| metal-dependent hydrolase [Gardnerella vaginalis 5-1] gi|297533099|gb|EFH71983.1| metal-dependent hydrolase [Gardnerella vaginalis 5-1] Length = 188 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D I L+ + ++ PT+V+SFP S + S MLGD+V+ + + Sbjct: 36 DLSITFVDPEPIACLHERWMNLEGPTDVMSFPMDELTPGSDEKVSEGMLGDLVICPWVAQ 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH ++ M GL+R ++ Sbjct: 96 QQALAAGHSTMEEMLLLTIHGILHLLGYDHTTPEEEKQMFGLQRQLM 142 >gi|169351077|ref|ZP_02868015.1| hypothetical protein CLOSPI_01856 [Clostridium spiroforme DSM 1552] gi|169292139|gb|EDS74272.1| hypothetical protein CLOSPI_01856 [Clostridium spiroforme DSM 1552] Length = 152 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 2/112 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LGDIVLAYEIIE 112 +ELS + D +I +N EYR ID+ T+V+SF + + +GDI ++ + Sbjct: 39 LELSCILVDDQKIHEINKEYRNIDRATDVISFALEDSEQYYVEGMARNIGDIFISVDHAL 98 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++AN G + + L HG LHLLG+DH++ +D M +++ IL L I Sbjct: 99 MQANEYGHSLKREMCFLFTHGLLHLLGFDHMEKEDEEKMIAMQKKILNALKI 150 >gi|126700056|ref|YP_001088953.1| hypothetical protein CD2440 [Clostridium difficile 630] gi|254976033|ref|ZP_05272505.1| hypothetical protein CdifQC_11999 [Clostridium difficile QCD-66c26] gi|255093421|ref|ZP_05322899.1| hypothetical protein CdifC_12284 [Clostridium difficile CIP 107932] gi|255101599|ref|ZP_05330576.1| hypothetical protein CdifQCD-6_12369 [Clostridium difficile QCD-63q42] gi|255307468|ref|ZP_05351639.1| hypothetical protein CdifA_12817 [Clostridium difficile ATCC 43255] gi|255315166|ref|ZP_05356749.1| hypothetical protein CdifQCD-7_12477 [Clostridium difficile QCD-76w55] gi|255517835|ref|ZP_05385511.1| hypothetical protein CdifQCD-_12036 [Clostridium difficile QCD-97b34] gi|255650951|ref|ZP_05397853.1| hypothetical protein CdifQCD_12241 [Clostridium difficile QCD-37x79] gi|260684020|ref|YP_003215305.1| hypothetical protein CD196_2285 [Clostridium difficile CD196] gi|260687680|ref|YP_003218814.1| hypothetical protein CDR20291_2332 [Clostridium difficile R20291] gi|306520831|ref|ZP_07407178.1| hypothetical protein CdifQ_14166 [Clostridium difficile QCD-32g58] gi|123362995|sp|Q182C6|RRMF_CLOD6 RecName: Full=Probable rRNA maturation factor gi|115251493|emb|CAJ69326.1| putative metal-dependent hydrolase [Clostridium difficile] gi|260210183|emb|CBA64380.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213697|emb|CBE05571.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 153 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEII 111 E+SL F D+ I LN EYRG+D+ T+VLSFP S D LGDIV++ E Sbjct: 40 EVSLSFVDNKEIHELNREYRGVDRVTDVLSFP--LLSDDFEDVELEEESLGDIVVSLERA 97 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ FE + LI H HLLGYDH D++ M E IL L I Sbjct: 98 LEQSIEYNHSFEREVCFLICHSMFHLLGYDHDTDENTKEMREKEEHILNKLNI 150 >gi|322383672|ref|ZP_08057423.1| metalloprotease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151884|gb|EFX44827.1| metalloprotease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 170 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 19/128 (14%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD------------GCSSLM--- 100 E++L F ++ I LN +YRGID+PT+VLSF D G +++ Sbjct: 41 EVTLTFVNNDMIHELNRQYRGIDRPTDVLSFAMQEMGEDELIISYGELDEDGIEAVLEDK 100 Query: 101 ----LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LGDI+++ +A G FE L L +HGFLHL+GYDH + + M + Sbjct: 101 IVEPLGDIIISIPKTIEQAEEYGHSFERELGFLFVHGFLHLVGYDHQTEDEEKKMFAKQE 160 Query: 157 SILEDLGI 164 IL G+ Sbjct: 161 LILSQAGL 168 >gi|322378540|ref|ZP_08052988.1| putative metalloprotease [Helicobacter suis HS1] gi|322379746|ref|ZP_08054056.1| putative metalloprotease [Helicobacter suis HS5] gi|321147817|gb|EFX42407.1| putative metalloprotease [Helicobacter suis HS5] gi|321149054|gb|EFX43506.1| putative metalloprotease [Helicobacter suis HS1] Length = 157 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 7/99 (7%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLA 107 Y + +VEL LV D ++ LN E+RG+DK T+VLSFP +LG +V+ Sbjct: 39 YLNIQGLVELLLV--DVEKMRELNLEFRGLDKSTDVLSFPLEIPGQK-----LLGSVVIN 91 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 E+ IEA G + L +HG LHLLG+DH D+ Sbjct: 92 VELATIEAKQRGHSLFAEITLLFVHGCLHLLGFDHEKDR 130 >gi|19553485|ref|NP_601487.1| putative metalloprotease [Corynebacterium glutamicum ATCC 13032] gi|62391128|ref|YP_226530.1| metalloprotease [Corynebacterium glutamicum ATCC 13032] gi|26006926|sp|Q8NNB7|RRMF_CORGL RecName: Full=Probable rRNA maturation factor gi|21325058|dbj|BAB99680.1| Predicted metal-dependent hydrolase [Corynebacterium glutamicum ATCC 13032] gi|41326467|emb|CAF20629.1| Predicted metal-dependent hydrolase [Corynebacterium glutamicum ATCC 13032] Length = 196 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSS--LMLGDIVLA 107 E S+ D I L+ ++ ++ PT+V+SFP ++ DG + MLGDIVL Sbjct: 36 AEASIHIVDVDTIADLHVKWLDLEGPTDVMSFPMDELTPGYSRPDGATPGPAMLGDIVLC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E +A G + + L L +HG LHLLGYDHVD + M L+ +L D Sbjct: 96 PEFAAKQATKAGHDLAHELALLTVHGSLHLLGYDHVDPAEEREMFALQNELLAD 149 >gi|54023400|ref|YP_117642.1| putative metalloprotease [Nocardia farcinica IFM 10152] gi|59799084|sp|Q5YZW3|RRMF_NOCFA RecName: Full=Probable rRNA maturation factor gi|54014908|dbj|BAD56278.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 184 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 11/131 (8%) Query: 42 NLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AF 90 +L+S FV + ELS+V D + L+ + + PT+V+SFP Sbjct: 17 DLVSVARFVIGRMDVHPAAELSMVLVDLDTMADLHMRWMDLPGPTDVMSFPMDELEPGGR 76 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 S MLGDIVL E +A+ G E+ L L +HG LHLLGYDH + ++ Sbjct: 77 PDSPEPGPSMLGDIVLCPEFAADQAHKAGHSLEHELALLTVHGVLHLLGYDHAEPEEEKE 136 Query: 151 MEGLERSILED 161 M L+ +LE+ Sbjct: 137 MFALQARLLEE 147 >gi|21672692|ref|NP_660759.1| hypothetical protein BUsg427 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|21623332|gb|AAM67970.1| hypothetical 17.5 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 105 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 2/102 (1%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 ++ +N +YRG +K TN+LSF F + +LGD+VL +IIE E+ K E+ Sbjct: 1 MKNINLKYRGKNKSTNILSFK--FDLFINKNQTLLGDLVLCKKIIEKESLKYQKTLESRW 58 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+IIHG LHLLGYDH + K+ +ME +E I+ L PY Sbjct: 59 AHMIIHGTLHLLGYDHKNKKEKKIMEKIENKIMLFLNYEKPY 100 >gi|218282278|ref|ZP_03488577.1| hypothetical protein EUBIFOR_01159 [Eubacterium biforme DSM 3989] gi|218216746|gb|EEC90284.1| hypothetical protein EUBIFOR_01159 [Eubacterium biforme DSM 3989] Length = 151 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 5/132 (3%) Query: 36 FAKAVSNLISKGYFVKENIVE--LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + K N++ + V E + LS+++ +I +N +YR +D+ T+V+SF S Sbjct: 17 YKKDFENILERACQVLERKGDWSLSVIYVTPEQIHEINRDYRNVDRATDVISFAIQDDMS 76 Query: 94 DGC---SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D LGDI + + I +A+ G L HG LHL+GYDH+ ++D V Sbjct: 77 DMLVDEDQYELGDIFINVQAIRDQASAYGHSIRREACFLFCHGLLHLMGYDHMKEEDEKV 136 Query: 151 MEGLERSILEDL 162 M L+ IL++L Sbjct: 137 MFALQDEILDEL 148 >gi|289423899|ref|ZP_06425692.1| putative metalloprotease [Peptostreptococcus anaerobius 653-L] gi|289155676|gb|EFD04348.1| putative metalloprotease [Peptostreptococcus anaerobius 653-L] Length = 158 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 6/113 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEII 111 E+SL F D+ I LN E+R ID+ T+VLSFP F SL GDIV++ + Sbjct: 40 EVSLSFVDNEEIRNLNREFRNIDRVTDVLSFPMLSDDEFDIEYEVESL--GDIVISIQRA 97 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A E + L+ H HLLGYDH+++++A M E +L L I Sbjct: 98 DEQAEEFDHSLEREICFLVCHSMFHLLGYDHMEEEEAKDMHRREEEVLNGLDI 150 >gi|306822850|ref|ZP_07456226.1| probable metalloprotease [Bifidobacterium dentium ATCC 27679] gi|309801136|ref|ZP_07695265.1| translation metalloprotein YbeY [Bifidobacterium dentium JCVIHMP022] gi|304553482|gb|EFM41393.1| probable metalloprotease [Bifidobacterium dentium ATCC 27679] gi|308222025|gb|EFO78308.1| translation metalloprotein YbeY [Bifidobacterium dentium JCVIHMP022] Length = 181 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSL--MLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP DG + + +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|293400676|ref|ZP_06644821.1| putative metalloprotease [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305702|gb|EFE46946.1| putative metalloprotease [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 162 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 7/108 (6%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVLAYEIIE 112 S++F D I +N EYR ID+PT+V+SF A + +M LGDI + + + Sbjct: 48 SIIFVDPAMIHEINREYRHIDRPTDVISF--ALKDEEDTYEMMEGLDELGDIFINVQAVV 105 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +A G + L HG LHLLGYDH++ D +M L+ IL+ Sbjct: 106 DQAAEYGHSLRREVCFLFTHGLLHLLGYDHMEKDDEKIMFALQDVILD 153 >gi|154483546|ref|ZP_02025994.1| hypothetical protein EUBVEN_01250 [Eubacterium ventriosum ATCC 27560] gi|149735456|gb|EDM51342.1| hypothetical protein EUBVEN_01250 [Eubacterium ventriosum ATCC 27560] Length = 166 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 15/124 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---------AFASSD------GCSSLM 100 E+++ D++ I +N E R ID+PT+VLSFP + A D L+ Sbjct: 39 EVNVTIVDNNTIHEINREQRKIDRPTDVLSFPMLDYEVAGDFSMAEDDISNFNPDSGELI 98 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDIV++Y+ + +A + L L+ H LHL G+DH+ D + ME + IL Sbjct: 99 LGDIVISYDKVIEQAAEYNHSRKRELAFLVAHSMLHLFGFDHMVDDERIEMEEKQNIILN 158 Query: 161 DLGI 164 +LGI Sbjct: 159 NLGI 162 >gi|220928028|ref|YP_002504937.1| hypothetical protein Ccel_0576 [Clostridium cellulolyticum H10] gi|219998356|gb|ACL74957.1| protein of unknown function UPF0054 [Clostridium cellulolyticum H10] Length = 161 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 11/120 (9%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AFASSDG-----CSSLMLGDI 104 E++++ D I +N E+R DK T+VLSFP S +G L+LGDI Sbjct: 39 EVNVLIVDDEEIRGINKEHRDTDKSTDVLSFPMVNFKDGKLISDEGDYDLEMGELILGDI 98 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E + +A G FE + L H HLLGYDH++ + +M + IL ++G+ Sbjct: 99 IISAETAQRQAEAYGHSFEREMAFLTAHSCFHLLGYDHMEKNEEEIMFKKQEDILIEIGL 158 >gi|307155325|ref|YP_003890709.1| hypothetical protein Cyan7822_5562 [Cyanothece sp. PCC 7822] gi|306985553|gb|ADN17434.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 7822] Length = 181 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 14/119 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------GCSSLMLGDIV 105 ELSL TD I+ N +YR ++PT+VL AFA+ + L LGDI+ Sbjct: 63 ELSLRLTDDQEIQYYNAQYRHKNQPTDVL----AFAALEVEVPYQIDEFSDEPLYLGDII 118 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ E +A G L +L HGFLHLLG+DH DD+ M + +L L + Sbjct: 119 ISVETASRQATEQGHSLTRELANLAAHGFLHLLGWDHPDDESLMAMLSQQEILLNHLPL 177 >gi|229824092|ref|ZP_04450161.1| hypothetical protein GCWU000282_01396 [Catonella morbi ATCC 51271] gi|229786446|gb|EEP22560.1| hypothetical protein GCWU000282_01396 [Catonella morbi ATCC 51271] Length = 176 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 28/139 (20%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-------------------- 94 +EL L + I+ LN +YRG+DKPT+VLSF SS+ Sbjct: 37 IELDLSIVSNEEIQALNRDYRGLDKPTDVLSFALTEVSSEYDVDFAHLDLAEEAEETEDL 96 Query: 95 --------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 LGDI+++Y + +A G + L L +HGFLHL GYDH ++ Sbjct: 97 EETEFEEEEAIPQHLGDIIISYPRAQEQAQDYGHSLDRELAFLAVHGFLHLNGYDHQTEE 156 Query: 147 DACVMEGLERSILEDLGIN 165 +A M ++ +L G+ Sbjct: 157 EAQEMFRIQEEVLTTYGLT 175 >gi|145595964|ref|YP_001160261.1| putative metalloprotease [Salinispora tropica CNB-440] gi|189040145|sp|A4XAD4|RRMF_SALTO RecName: Full=Probable rRNA maturation factor gi|145305301|gb|ABP55883.1| protein of unknown function UPF0054 [Salinispora tropica CNB-440] Length = 157 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 9/116 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGD 103 + ELS++ D + LN + G D PT+VL+FP S D G +LGD Sbjct: 33 QLAELSVLLVDIDYMAELNHRWMGGDGPTDVLAFPMDEGSVDHGPGENAAAGAEPALLGD 92 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 IVL E+ +A G + L L +HG LHLLGYDH + ++ M L+ +L Sbjct: 93 IVLCPEVAAKQAVTAGHSTADELHLLTVHGVLHLLGYDHAEPEEEREMFALQARLL 148 >gi|50955089|ref|YP_062377.1| putative metalloprotease [Leifsonia xyli subsp. xyli str. CTCB07] gi|59799105|sp|Q6AEC4|RRMF_LEIXX RecName: Full=Probable rRNA maturation factor gi|50951571|gb|AAT89272.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 153 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEI 110 EL+++ D +E L+ ++ PT+VLSFP + + +LGD+VL ++ Sbjct: 35 AELAILLVDEAAMEQLHVQWMDEPGPTDVLSFPMDELRPGTEDEPSPAGLLGDVVLCPQV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +++A G + L+ L+ HG LHLLG+DH + + M G++R IL Sbjct: 95 AQVQAETTGHTLMDELLLLMTHGILHLLGFDHAEPAEEREMFGIQRDIL 143 >gi|159039362|ref|YP_001538615.1| putative metalloprotease [Salinispora arenicola CNS-205] gi|157918197|gb|ABV99624.1| protein of unknown function UPF0054 [Salinispora arenicola CNS-205] Length = 170 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 9/116 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGD 103 + ELS++ D + LN + G D PT+VL+FP S D G +LGD Sbjct: 46 QLAELSVLLVDIDYMAELNHRWMGGDGPTDVLAFPMDEGSVDHGPGESAVAGTEPALLGD 105 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 IVL E+ +A G + L L +HG LHLLGYDH + + M L+ +L Sbjct: 106 IVLCPEVAAKQAATAGHSAADELHLLTVHGVLHLLGYDHAEPDEEREMFALQARLL 161 >gi|304385069|ref|ZP_07367415.1| metal-dependent hydrolase [Pediococcus acidilactici DSM 20284] gi|304329263|gb|EFL96483.1| metal-dependent hydrolase [Pediococcus acidilactici DSM 20284] Length = 157 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 9/127 (7%) Query: 47 GYFVKENI-VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML---- 101 G ++K ++ E+S+ + I+ +N EYR +D+PT+V+SF D + Sbjct: 29 GNYLKLDVATEISVTLMHNDEIQKINREYRNVDRPTDVISFAINDEDEDIIMDPEMAEEI 88 Query: 102 ----GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 GD++++ + + +A LG +E L L +HGFLHL GYDH+ +D M L++ Sbjct: 89 PDNIGDLMISVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMKKEDQEKMFPLQKE 148 Query: 158 ILEDLGI 164 I+ G+ Sbjct: 149 IMSAYGL 155 >gi|229916329|ref|YP_002884975.1| hypothetical protein EAT1b_0598 [Exiguobacterium sp. AT1b] gi|259647091|sp|C4L408|RRMF_EXISA RecName: Full=Probable rRNA maturation factor gi|229467758|gb|ACQ69530.1| protein of unknown function UPF0054 [Exiguobacterium sp. AT1b] Length = 158 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 12/145 (8%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE L T ++ +++ ++ V+E ELS+ + + I +N E+RG D PT+V Sbjct: 7 DEHELLTTSQIELVESILQHAAQLEGVEEP-SELSVTYLTNAEIHEVNREWRGKDAPTDV 65 Query: 84 LSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 +SF AF D +LGD+V++ E +A G FE L L IHGF Sbjct: 66 ISF--AFDEMGDEEMDFMLDEDEPHLLGDLVISVERCREQAADYGHSFERELGFLAIHGF 123 Query: 135 LHLLGYDHVDDKDACVMEGLERSIL 159 LHLLGYDH+ ++ M + +L Sbjct: 124 LHLLGYDHMTPEEEAEMTARQEEVL 148 >gi|302338950|ref|YP_003804156.1| protein of unknown function UPF0054 [Spirochaeta smaragdinae DSM 11293] gi|301636135|gb|ADK81562.1| protein of unknown function UPF0054 [Spirochaeta smaragdinae DSM 11293] Length = 153 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 8/111 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAYE 109 ELS++F + + LN +RGID PT+VLSF S DG S+ GDIV++ + Sbjct: 37 ELSILFCNDDTMRDLNRTWRGIDAPTDVLSFSQLEEENVVSGSEDG--SVYAGDIVISLD 94 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +++ + + E L L+IHG LHL GYDH ++ + M L+ I++ Sbjct: 95 TLDLHSKLFSVAREEELKRLLIHGILHLAGYDHETNEGSEPMLTLQEEIVK 145 >gi|270291319|ref|ZP_06197541.1| metalloprotease [Pediococcus acidilactici 7_4] gi|270280165|gb|EFA26001.1| metalloprotease [Pediococcus acidilactici 7_4] Length = 156 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 9/127 (7%) Query: 47 GYFVKENI-VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML---- 101 G ++K ++ E+S+ + I+ +N EYR +D+PT+V+SF D + Sbjct: 28 GNYLKLDVATEISVTLMHNDEIQKINREYRNVDRPTDVISFAINDEDEDIIMDPEMAEEI 87 Query: 102 ----GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 GD++++ + + +A LG +E L L +HGFLHL GYDH+ +D M L++ Sbjct: 88 PDNIGDLMISVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMKKEDQEKMFPLQKE 147 Query: 158 ILEDLGI 164 I+ G+ Sbjct: 148 IMSAYGL 154 >gi|189040309|sp|A8M0W3|RRMF_SALAI RecName: Full=Probable rRNA maturation factor Length = 157 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 9/116 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGD 103 + ELS++ D + LN + G D PT+VL+FP S D G +LGD Sbjct: 33 QLAELSVLLVDIDYMAELNHRWMGGDGPTDVLAFPMDEGSVDHGPGESAVAGTEPALLGD 92 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 IVL E+ +A G + L L +HG LHLLGYDH + + M L+ +L Sbjct: 93 IVLCPEVAAKQAATAGHSAADELHLLTVHGVLHLLGYDHAEPDEEREMFALQARLL 148 >gi|145296242|ref|YP_001139063.1| putative metalloprotease [Corynebacterium glutamicum R] gi|166227674|sp|A4QFZ5|RRMF_CORGB RecName: Full=Probable rRNA maturation factor gi|140846162|dbj|BAF55161.1| hypothetical protein [Corynebacterium glutamicum R] Length = 196 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSS--LMLGDIVLA 107 E S+ D I L+ ++ ++ PT+V+SFP ++ DG + MLGDIVL Sbjct: 36 AEASIHIVDLDTIADLHVKWLDLEGPTDVMSFPMDELTPGYSRPDGATPGPAMLGDIVLC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E +A G + + L L +HG LHLLGYDHVD + M L+ +L D Sbjct: 96 PEFAAKQATKAGHDLAHELALLTVHGSLHLLGYDHVDPAEEREMFALQNELLAD 149 >gi|167465835|ref|ZP_02330924.1| hypothetical protein Plarl_25263 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 150 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 19/128 (14%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD------------GCSSLM--- 100 E++L F ++ I LN +YRGID+PT+VLSF D G +++ Sbjct: 21 EVTLTFVNNDMIHELNRQYRGIDRPTDVLSFAMQEMGEDELIISYGELDEDGIEAVLEDK 80 Query: 101 ----LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LGDI+++ +A G FE L L +HGFLHL+GYDH + + M + Sbjct: 81 IVEPLGDIIISIPKTIEQAEEYGHSFERELGFLFVHGFLHLVGYDHQTEDEEKKMFAKQE 140 Query: 157 SILEDLGI 164 IL G+ Sbjct: 141 LILSQAGL 148 >gi|160933318|ref|ZP_02080706.1| hypothetical protein CLOLEP_02163 [Clostridium leptum DSM 753] gi|156867195|gb|EDO60567.1| hypothetical protein CLOLEP_02163 [Clostridium leptum DSM 753] Length = 169 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----FASSDGCSSLMLGDIVLA 107 + E+S+ F ++ +I LN +R +D PT+VLSFP + ++ +LGDIV++ Sbjct: 40 QGAAEVSVTFANNEQIHELNKMHRNVDAPTDVLSFPMGEDGKYDIDPATNAKILGDIVIS 99 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E +A G + + +L H LHLLGYDH + + M E ++ LG+ Sbjct: 100 MEKAVEQAERFGHTLQREVGYLTAHSMLHLLGYDHEEPLEKVHMREKEELVMTQLGL 156 >gi|42526751|ref|NP_971849.1| putative metalloprotease [Treponema denticola ATCC 35405] gi|59799128|sp|Q73NB3|RRMF_TREDE RecName: Full=Probable rRNA maturation factor gi|41817066|gb|AAS11760.1| conserved hypothetical protein TIGR00043 [Treponema denticola ATCC 35405] gi|325473810|gb|EGC76998.1| metalloprotease [Treponema denticola F0402] Length = 155 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 2/106 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEI 113 ++SL+F D I+ LN +YR ID PT+VLSF + G + M GDIV++ + + Sbjct: 39 DISLLFCDDAFIQNLNKQYRDIDSPTDVLSFEQGDEYFDEAGETRFMAGDIVISLDSLSF 98 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A + L LI+HG LHL G DH D+ M + +L Sbjct: 99 NAEEFNVDINEELKRLIVHGILHLNGMDHSDNSPEQEMLKFQEELL 144 >gi|256396155|ref|YP_003117719.1| hypothetical protein Caci_7048 [Catenulispora acidiphila DSM 44928] gi|256362381|gb|ACU75878.1| protein of unknown function UPF0054 [Catenulispora acidiphila DSM 44928] Length = 159 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 6/112 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCS-SLMLGDIVLA 107 + ELS++ D+ +E L+ ++ PT+VLSFP A A D +LGD+VL Sbjct: 38 MAELSILLVDTAAMEQLHIQWMDEPGPTDVLSFPMDELRPARAEDDNEPVPGLLGDVVLC 97 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E+ E + G L L HG LHLLGYDH + ++ M GL++ +L Sbjct: 98 PEVAERQGKDAGHSTAEELRLLTTHGILHLLGYDHAEPEEEAEMFGLQKQLL 149 >gi|56751122|ref|YP_171823.1| putative metalloprotease [Synechococcus elongatus PCC 6301] gi|81299213|ref|YP_399421.1| putative metalloprotease [Synechococcus elongatus PCC 7942] gi|62901410|sp|Q5N317|RRMF_SYNP6 RecName: Full=Probable rRNA maturation factor gi|123557443|sp|Q31R85|RRMF_SYNE7 RecName: Full=Probable rRNA maturation factor gi|56686081|dbj|BAD79303.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168094|gb|ABB56434.1| Protein of unknown function UPF0054 [Synechococcus elongatus PCC 7942] Length = 174 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 8/101 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-----DGCSSLMLGDIVLAYEI 110 E L F D I+ LN +YR +DKPT+VL+F A D L LGD++++ Sbjct: 46 EACLRFVDDAEIQQLNRDYRQLDKPTDVLAF-AALEDELALGFDPEEPLYLGDVIISVPT 104 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + +A G E LV L HG LHLLG+DH +++ M Sbjct: 105 AQRQAQ--GHALETELVWLSAHGLLHLLGWDHPNEEQLAAM 143 >gi|312196050|ref|YP_004016111.1| hypothetical protein FraEuI1c_2202 [Frankia sp. EuI1c] gi|311227386|gb|ADP80241.1| protein of unknown function UPF0054 [Frankia sp. EuI1c] Length = 188 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 7/113 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASS-----DGCSSLMLGDIVL 106 + ELS++ ++ + L+ Y G D PT+VL+FP AF SS D + +LGD+VL Sbjct: 35 LAELSIMIVETAAMTDLHVRYMGEDGPTDVLAFPQDEAFESSYADSADNDPATLLGDVVL 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E+ +A G + L L HG LHLLGYDH + + M L+ +L Sbjct: 95 CPEVARKQAVTAGHSAQRELHLLCTHGILHLLGYDHAEQAEEREMFRLQEDLL 147 >gi|325123553|gb|ADY83076.1| hypothetical protein BDGL_002490 [Acinetobacter calcoaceticus PHEA-2] Length = 158 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 E+ + D + LN +YR DKPTNVLSFP+ +L LGD+V+ ++ Sbjct: 41 EIGVACVDLDESQQLNLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQ 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 EA K +NH HL++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 101 EALEQKKTAQNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 157 >gi|326403549|ref|YP_004283631.1| putative metalloprotease [Acidiphilium multivorum AIU301] gi|325050411|dbj|BAJ80749.1| putative metalloprotease [Acidiphilium multivorum AIU301] Length = 150 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 12/112 (10%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 ++ D+ ++ LN RG +KPTNVL++ M +I+LA ++ EA Sbjct: 48 PVILADNRTVKALNARDRGRNKPTNVLTY------------EMPPEIILALGVVLREARA 95 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + +HL HL++HG LHL G DH + +A ME LE +L LG+ +P++ Sbjct: 96 ARRRPAHHLAHLVVHGALHLAGEDHHEAGEARRMERLETRLLHRLGVPNPWK 147 >gi|148260358|ref|YP_001234485.1| hypothetical protein Acry_1355 [Acidiphilium cryptum JF-5] gi|146402039|gb|ABQ30566.1| protein of unknown function UPF0054 [Acidiphilium cryptum JF-5] Length = 150 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 12/112 (10%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 ++ D+ ++ LN RG +KPTNVL++ M +I+LA ++ EA Sbjct: 48 PVILADNRTVKALNARDRGRNKPTNVLTY------------EMPPEIILALGVVLREARA 95 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + +HL HL++HG LHL G DH + +A ME LE +L LG+ +P++ Sbjct: 96 ARRRPAHHLAHLVVHGALHLAGEDHHEAGEARRMERLEARLLHRLGVPNPWK 147 >gi|260583649|ref|ZP_05851397.1| metalloprotease [Granulicatella elegans ATCC 700633] gi|260158275|gb|EEW93343.1| metalloprotease [Granulicatella elegans ATCC 700633] Length = 161 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 11/120 (9%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----------TAFASSDGCSSLMLGDI 104 E + F S RI +N ++R IDK T+V+SF F +SD +GDI Sbjct: 38 ECCISFVSSERIREINRDFRNIDKVTDVISFALDDEDEDMDPIKNFMASDENFVTSIGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ + + +A G E L L +HGFLHL GYDH +++ M GL+ IL G+ Sbjct: 98 IISVDRAKEQAEEYGHSLERELGFLALHGFLHLNGYDHQTEEEEKEMTGLQTEILTAYGL 157 >gi|86739975|ref|YP_480375.1| putative metalloprotease [Frankia sp. CcI3] gi|123765131|sp|Q2JDJ6|RRMF_FRASC RecName: Full=Probable rRNA maturation factor gi|86566837|gb|ABD10646.1| protein of unknown function UPF0054 [Frankia sp. CcI3] Length = 201 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 7/113 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASS-----DGCSSLMLGDIVL 106 + ELS++ + + L+ Y G + PT+VLSFP AF +S D + +LGD+VL Sbjct: 35 LAELSVMLVEPKAMTDLHVRYMGEEGPTDVLSFPQDDAFDASWSESVDDDPTTLLGDVVL 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ +A G F+ L L HG LHLLGYDH + + M ++ +L Sbjct: 95 CPDVARRQAEQAGHSFDRELSLLCTHGILHLLGYDHAEPDEEREMWKVQSQLL 147 >gi|269123310|ref|YP_003305887.1| hypothetical protein Smon_0530 [Streptobacillus moniliformis DSM 12112] gi|268314636|gb|ACZ01010.1| protein of unknown function UPF0054 [Streptobacillus moniliformis DSM 12112] Length = 154 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 13/153 (8%) Query: 11 LDLQIA---VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 L+L I+ ++N + +E + E V + + K ++ SL+ TD+ I Sbjct: 2 LNLDISFKDIDNKEYINEDKILEFSEFVIKNEREDYLDKELYI-------SLLLTDNKNI 54 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEANVLGKEFENHL 126 + +N EYR D PT+V+SF A+ ++ + ++GDIV++ + +E ++ Sbjct: 55 QEINREYREKDSPTDVISF--AYNETENFGGVEVVGDIVISLDRVEEQSKEYNHSVIREF 112 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++++HG LH+LGYDH+++ D +M E L Sbjct: 113 YYVLVHGLLHILGYDHIEEDDKKIMREKEEYYL 145 >gi|237785903|ref|YP_002906608.1| putative metalloprotease [Corynebacterium kroppenstedtii DSM 44385] gi|259646826|sp|C4LJR0|RRMF_CORK4 RecName: Full=Probable rRNA maturation factor gi|237758815|gb|ACR18065.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 202 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLA 107 ++++ D IE L+ + ++ PT+V+SFP + +D MLGDIVL Sbjct: 36 ADMTISIVDEPTIEDLHVRWLNLEGPTDVMSFPMDELTPGSGRPDADAPGPAMLGDIVLC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E +A+ G + L L +HG LHLLGYDHV ++ M L+ IL D Sbjct: 96 PAFAERQAHRAGHGLGHELSLLTVHGILHLLGYDHVAPEEERRMFALQNDILAD 149 >gi|307634994|gb|ADI85044.2| protein of unknown function UPF0054 [Geobacter sulfurreducens KN400] Length = 150 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+V T I +N +Y G D+PTNV+SF + +LGD++++ + EA Sbjct: 36 ELSVVITGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSIL 159 G F + L L++HG LH+ GYDH + +A ME ER I Sbjct: 96 EEAGIAFWSRLCFLLLHGTLHITGYDHERSGEAEARRMEAKEREIF 141 >gi|297622689|ref|YP_003704123.1| hypothetical protein Trad_0443 [Truepera radiovictrix DSM 17093] gi|297163869|gb|ADI13580.1| protein of unknown function UPF0054 [Truepera radiovictrix DSM 17093] Length = 147 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIE 114 EL++V D +I LN +RG D PT+VLS+P A G + LGDIV++ + + Sbjct: 33 ELTIVLVDDPKIRELNRAHRGEDAPTDVLSYPLAEPDDAGFPEVPHLGDIVISLDTAARQ 92 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A G E +V L HG HLLG+DH Sbjct: 93 AAAQGHTLELEVVTLAAHGLTHLLGFDH 120 >gi|224282932|ref|ZP_03646254.1| putative metalloprotease [Bifidobacterium bifidum NCIMB 41171] gi|310287375|ref|YP_003938633.1| hypothetical protein BBIF_0854 [Bifidobacterium bifidum S17] gi|311064216|ref|YP_003970941.1| hypothetical protein BBPR_0823 [Bifidobacterium bifidum PRL2010] gi|313140091|ref|ZP_07802284.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|309251311|gb|ADO53059.1| conserved hypothetical protein [Bifidobacterium bifidum S17] gi|310866535|gb|ADP35904.1| Conserved hypothetical protein in uncharacterized protein family UPF0054 [Bifidobacterium bifidum PRL2010] gi|313132601|gb|EFR50218.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 181 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 11/131 (8%) Query: 37 AKAVSNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AF 90 AKA S+L G +V + + +L+++F D I L+ + ++ PT+V+SFP Sbjct: 15 AKAFSDL---GLWVMDQMRVSTQSDLTILFVDPDPIAELHERWMSLEGPTDVMSFPMDEL 71 Query: 91 ASSDGCSSL--MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 DG +++ +LGD+V+ + +A G ++ L IHG LHLLGYDHV + Sbjct: 72 RPGDGKTTMEGVLGDLVICPWVAAQQAAAAGHSTMQEMMLLTIHGILHLLGYDHVTPEQE 131 Query: 149 CVMEGLERSIL 159 M GL+R +L Sbjct: 132 RQMFGLQRQLL 142 >gi|299768716|ref|YP_003730742.1| metal-dependent hydrolase [Acinetobacter sp. DR1] gi|298698804|gb|ADI89369.1| metal-dependent hydrolase [Acinetobacter sp. DR1] Length = 160 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/117 (43%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 E+ + D + LN +YR DKPTNVLSFP+ +L LGD+V+ ++ Sbjct: 41 EIGVACVDLAESQQLNLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQ 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 EA K +NH HL++HG LHLLGYDH D+DA MEG+E IL L I +PY+ Sbjct: 101 EALEQKKTAQNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGIEVEILAKLNIENPYQ 157 >gi|148243345|ref|YP_001228502.1| metal-dependent hydrolase [Synechococcus sp. RCC307] gi|172047894|sp|A5GW90|RRMF_SYNR3 RecName: Full=Probable rRNA maturation factor gi|147851655|emb|CAK29149.1| Predicted metal-dependent hydrolase [Synechococcus sp. RCC307] Length = 160 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LGDIVLA 107 +K + L L F D I LN ++R KPT+VLSF + + L LGDIV++ Sbjct: 43 LKADAYSLGLQFCDDAAIAELNGQWRQQPKPTDVLSFAAQEDAPEPLEGLPIELGDIVIS 102 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 E +A G + L+ L HG LHLLG+DH D+ M Sbjct: 103 IPTAERQAPEHGHSLQQELLFLASHGLLHLLGWDHPDEASLAAM 146 >gi|320527302|ref|ZP_08028487.1| conserved hypothetical protein TIGR00043 [Solobacterium moorei F0204] gi|320132326|gb|EFW24871.1| conserved hypothetical protein TIGR00043 [Solobacterium moorei F0204] Length = 152 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 10/112 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM------LGDIVLAY 108 +E+S+ F S I +N +YRGID+PT+V+SF A DG + + LGD+ + Sbjct: 37 LEISITFVRSRTIHIINRDYRGIDRPTDVISF----AIRDGLEAFIPDEEKDLGDLFINI 92 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + +A G + + L HG LH LGYDH++ D M L+ IL+ Sbjct: 93 DYARKQAREYGHSEKREMGFLFTHGLLHCLGYDHMNPDDEKKMFALQDRILD 144 >gi|32266731|ref|NP_860763.1| putative metalloprotease [Helicobacter hepaticus ATCC 51449] gi|46577395|sp|Q7VGT8|RRMF_HELHP RecName: Full=Probable rRNA maturation factor gi|32262782|gb|AAP77829.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 163 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 12/119 (10%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS--------LMLGDIVLAY 108 L ++ DS + +NF +R + T+VLSFP S+G S + LG +V+ Y Sbjct: 42 LEVLAVDSQNMREINFAHRAKNSTTDVLSFP--LDVSEGADSHILAKQMKICLGSVVINY 99 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 E+ + A G ++ + L IHGFLH+LGYDH + D LE+ I+E LG+ + Sbjct: 100 ELAQKVAKQRGHSTQDEISLLFIHGFLHILGYDH--EVDNGEQRALEQKIIESLGLKES 156 >gi|168281735|ref|ZP_02689402.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675946|gb|EDT87851.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 155 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 3/104 (2%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 F D I+ +N YR D T+V+SF AF + + L LG++ + Y+ + +AN Sbjct: 45 FVDEKTIQEINRNYRNKDYITDVISF--AFDDGEIITPL-LGEMYICYQKVVDQANQFAH 101 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE L L HG LHLLGYDH+ +D +M L+ IL +L I Sbjct: 102 SFERELCFLFTHGLLHLLGYDHMKIEDEKIMFALQDEILNELKI 145 >gi|17227767|ref|NP_484315.1| putative metalloprotease [Nostoc sp. PCC 7120] gi|26006906|sp|Q8Z032|RRMF_NOSS1 RecName: Full=Probable rRNA maturation factor gi|17135249|dbj|BAB77795.1| all0271 [Nostoc sp. PCC 7120] Length = 184 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 15/120 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----------PTAFASSDGCSSLMLGDIV 105 E+ L TD I+ +N +YR +KPT+VL+F P A L LGDIV Sbjct: 65 EIGLRLTDDTEIQAINAQYRQQNKPTDVLAFAALEVDLPQNPEMVAEP-----LYLGDIV 119 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A L L HG LHLLG+DH D++ M + +LE +GIN Sbjct: 120 VSINTAQRQAGQQEHSLSTELAWLTAHGLLHLLGWDHPDEESLIAMLQQQVVLLEAIGIN 179 >gi|288916972|ref|ZP_06411344.1| protein of unknown function UPF0054 [Frankia sp. EUN1f] gi|288351681|gb|EFC85886.1| protein of unknown function UPF0054 [Frankia sp. EUN1f] Length = 159 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 7/118 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGCS-----SLMLGDIVL 106 + ELS++ + + L+ Y G D PT+VL+FP AF S S + +LGD+VL Sbjct: 35 LAELSVMLVEVDAMTDLHVRYMGEDGPTDVLAFPQDEAFEPSWSESVEEDPTTLLGDVVL 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E+ +A G E L L HG LHLLGYDH + ++ M L+ S+L I Sbjct: 95 CPEVARRQAGQAGHGMERELHILCTHGILHLLGYDHAEPEEEREMWKLQNSLLASWDI 152 >gi|86606284|ref|YP_475047.1| hypothetical protein CYA_1624 [Synechococcus sp. JA-3-3Ab] gi|86554826|gb|ABC99784.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 198 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 9/97 (9%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAY 108 ELSL T I LN E+R ID PT+VL+F P G +LGDIV++ Sbjct: 75 ELSLCLTSDEHIRQLNREFRHIDAPTDVLAFAAEETSTPVELQKITGVR--LLGDIVISV 132 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 +A G+ L L HG LHLLG+DH D+ Sbjct: 133 PTACAQAKAQGQRLSRELAWLASHGLLHLLGWDHPDE 169 >gi|291522236|emb|CBK80529.1| conserved hypothetical protein TIGR00043 [Coprococcus catus GD/7] Length = 166 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 17/122 (13%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-----------------CS 97 E+++V T + I +N +YR + KPT+VLSFP G Sbjct: 38 TEVNVVLTTNDEIAMINRDYRDLFKPTDVLSFPMIDYVRPGDFSVLEEGLTEDFFNPESG 97 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 L+LGDI+L+ + I +A G + L L+ H LHL GYDH+ D++ VME +R Sbjct: 98 ELILGDIILSVDKIIEQAASYGHSQQRELGFLVAHSMLHLFGYDHMQDEEREVMEEKQRD 157 Query: 158 IL 159 IL Sbjct: 158 IL 159 >gi|225351948|ref|ZP_03742971.1| hypothetical protein BIFPSEUDO_03553 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157195|gb|EEG70534.1| hypothetical protein BIFPSEUDO_03553 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 181 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSL--MLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP DG + + +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 96 QQALAAGHNTMEEMMLLTIHGILHLLGYDHATPEQERQMFGLQRQLL 142 >gi|302335756|ref|YP_003800963.1| protein of unknown function UPF0054 [Olsenella uli DSM 7084] gi|301319596|gb|ADK68083.1| protein of unknown function UPF0054 [Olsenella uli DSM 7084] Length = 168 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 9/110 (8%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA------FASSDGCSSLMLGDIVLAYEI 110 +S+ R+ LN +R D+ T+VLS A + C LGDIVLA Sbjct: 42 VSVSIVSDERMRELNRTWRDQDRATDVLSLECERPGDPDLAPGEPCE---LGDIVLAPSY 98 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 I +A L + L++HG LHLLGYDH+DD +A VME E ++L+ Sbjct: 99 IRRQAQRLSTTEADECRLLLVHGMLHLLGYDHLDDAEAEVMEAREDALLD 148 >gi|283769579|ref|ZP_06342475.1| metalloprotein, YbeY/ UPF0054 family [Bulleidia extructa W1219] gi|283103847|gb|EFC05233.1| metalloprotein, YbeY/ UPF0054 family [Bulleidia extructa W1219] Length = 147 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 9/114 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 E+S+ F S I +N +YRGID+PT+V+SF A DG + LGD+ + + Sbjct: 38 EISVTFVRSRTIHRINRDYRGIDRPTDVISF----AIQDGGEEIETHDLGDLFINVDYAV 93 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 +A G + L HG LH LGYDH + K+ M L+ +LE GI D Sbjct: 94 RQAKEYGHSEKREFCFLFAHGLLHCLGYDHRNPKEEKKMIALQNQLLE--GIAD 145 >gi|184159547|ref|YP_001847886.1| metal-dependent hydrolase [Acinetobacter baumannii ACICU] gi|239504223|ref|ZP_04663533.1| metal-dependent hydrolase [Acinetobacter baumannii AB900] gi|260557078|ref|ZP_05829295.1| metal-dependent hydrolase [Acinetobacter baumannii ATCC 19606] gi|332873008|ref|ZP_08440967.1| translation metalloprotein YbeY [Acinetobacter baumannii 6014059] gi|238685532|sp|A3M934|RRMF_ACIBT RecName: Full=Probable rRNA maturation factor gi|238691001|sp|B2HZ57|RRMF_ACIBC RecName: Full=Probable rRNA maturation factor gi|183211141|gb|ACC58539.1| predicted metal-dependent hydrolase [Acinetobacter baumannii ACICU] gi|193078437|gb|ABO13428.2| hypothetical protein A1S_3031 [Acinetobacter baumannii ATCC 17978] gi|260409684|gb|EEX02985.1| metal-dependent hydrolase [Acinetobacter baumannii ATCC 19606] gi|322509457|gb|ADX04911.1| metal-dependent hydrolase [Acinetobacter baumannii 1656-2] gi|323519478|gb|ADX93859.1| metal-dependent hydrolase [Acinetobacter baumannii TCDC-AB0715] gi|332738790|gb|EGJ69658.1| translation metalloprotein YbeY [Acinetobacter baumannii 6014059] Length = 158 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 E+ + D LN +YR DKPTNVLSFP+ +L LGD+V+ ++ Sbjct: 41 EIGIACVDLEESHQLNLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQ 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 EA K +NH HL++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 101 EALEQKKTAQNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 157 >gi|320353408|ref|YP_004194747.1| pyridoxine 5'-phosphate synthase [Desulfobulbus propionicus DSM 2032] gi|320121910|gb|ADW17456.1| pyridoxine 5'-phosphate synthase [Desulfobulbus propionicus DSM 2032] Length = 392 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVLAYE 109 ++S+VF + N +YR + PTNVLSFP A +G + LGDI+++ + Sbjct: 37 ADVSVVFLGDAEMAAYNEQYRRKNGPTNVLSFPAA----EGGEGFVAPENELGDILISVD 92 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL 162 EA G + L LIIHG LHL+GYDH +++A M E+ + + L Sbjct: 93 TARREAGQQGHSLHHRLTQLIIHGMLHLIGYDHERSEEEAVRMWDYEQELFQQL 146 >gi|212716038|ref|ZP_03324166.1| hypothetical protein BIFCAT_00950 [Bifidobacterium catenulatum DSM 16992] gi|212661405|gb|EEB21980.1| hypothetical protein BIFCAT_00950 [Bifidobacterium catenulatum DSM 16992] Length = 181 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSL--MLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP DG + + +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHATPEQERQMFGLQRQLL 142 >gi|296166307|ref|ZP_06848744.1| probable metalloprotease [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898316|gb|EFG77885.1| probable metalloprotease [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 177 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 15/134 (11%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------- 87 + LIS FV + ELS+V D+ + L+ + + PT+V+SFP Sbjct: 16 TELISVARFVIARMDVNPAAELSMVLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGG 75 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 A G S MLGDIVL E +A+ G + L L IHG LHLLGYDH + + Sbjct: 76 RPDAPEPGPS--MLGDIVLCPEFAAGQADAAGHSLGHELALLTIHGVLHLLGYDHGEPDE 133 Query: 148 ACVMEGLERSILED 161 M L+ +LE+ Sbjct: 134 EKEMFALQDRLLEE 147 >gi|51891669|ref|YP_074360.1| hypothetical protein STH531 [Symbiobacterium thermophilum IAM 14863] gi|59799024|sp|Q67S27|RRMF_SYMTH RecName: Full=Probable rRNA maturation factor gi|51855358|dbj|BAD39516.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 156 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 4/115 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----CSSLMLGDIVLAYEI 110 V +S+ D I LN ++RG+ PT+VLSF G + LGDIV++ E Sbjct: 41 VSVSVTLVDDETITDLNRDHRGLASPTDVLSFSQLEGEDMGDLPEGEPMPLGDIVISLER 100 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE L L HG LHL+G+DH +D M IL LG++ Sbjct: 101 CVSQAAEYGHSFERELGFLTAHGMLHLMGWDHQTPEDEARMMAKTEEILAGLGLS 155 >gi|213692454|ref|YP_002323040.1| protein of unknown function UPF0054 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254800568|sp|B7GS82|RRMF_BIFLI RecName: Full=Probable rRNA maturation factor gi|213523915|gb|ACJ52662.1| protein of unknown function UPF0054 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458599|dbj|BAJ69220.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 182 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSL--MLGDIVLAYEIIE 112 +L+++F D + I L+ + ++ PT+V+SFP DG + + +LGDIV+ + Sbjct: 36 DLTIMFVDPNPIAELHMRWMNLEGPTDVMSFPMDELRPGDGKTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMLLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|169794645|ref|YP_001712438.1| hypothetical protein ABAYE0460 [Acinetobacter baumannii AYE] gi|213157984|ref|YP_002320782.1| hypothetical protein AB57_3479 [Acinetobacter baumannii AB0057] gi|215482234|ref|YP_002324416.1| Uncharacterized protein family UPF0054 family protein [Acinetobacter baumannii AB307-0294] gi|301345375|ref|ZP_07226116.1| hypothetical protein AbauAB0_04004 [Acinetobacter baumannii AB056] gi|301511253|ref|ZP_07236490.1| hypothetical protein AbauAB05_06733 [Acinetobacter baumannii AB058] gi|301595635|ref|ZP_07240643.1| hypothetical protein AbauAB059_07482 [Acinetobacter baumannii AB059] gi|332855634|ref|ZP_08435977.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013150] gi|332868553|ref|ZP_08438219.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013113] gi|226703838|sp|B7I9D7|RRMF_ACIB5 RecName: Full=Probable rRNA maturation factor gi|226707624|sp|B7GW53|RRMF_ACIB3 RecName: Full=Probable rRNA maturation factor gi|238688043|sp|B0V6T5|RRMF_ACIBY RecName: Full=Probable rRNA maturation factor gi|169147572|emb|CAM85433.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|213057144|gb|ACJ42046.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213989001|gb|ACJ59300.1| Uncharacterized protein family UPF0054 family protein [Acinetobacter baumannii AB307-0294] gi|332727349|gb|EGJ58785.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013150] gi|332733323|gb|EGJ64516.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013113] Length = 158 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 E+ + D LN +YR DKPTNVLSFP+ +L LGD+V+ ++ Sbjct: 41 EIGIACVDLEESHQLNLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQ 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 EA K +NH HL++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 101 EALEQKKTAQNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 157 >gi|145572760|sp|Q2JU40|RRMF_SYNJA RecName: Full=Probable rRNA maturation factor Length = 163 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 9/97 (9%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAY 108 ELSL T I LN E+R ID PT+VL+F P G +LGDIV++ Sbjct: 40 ELSLCLTSDEHIRQLNREFRHIDAPTDVLAFAAEETSTPVELQKITGVR--LLGDIVISV 97 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 +A G+ L L HG LHLLG+DH D+ Sbjct: 98 PTACAQAKAQGQRLSRELAWLASHGLLHLLGWDHPDE 134 >gi|166366707|ref|YP_001658980.1| putative metalloprotease [Microcystis aeruginosa NIES-843] gi|166089080|dbj|BAG03788.1| putative metalloprotease [Microcystis aeruginosa NIES-843] Length = 170 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---FASSDG---CSSLMLGDIVLAYE 109 ELSL TD I+T N +YR D+PT+VL+F T F + L LGDI+++ E Sbjct: 52 ELSLRLTDDREIQTYNCQYRHKDQPTDVLAFATLEVDFPVDERILETEPLYLGDIIISVE 111 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + +A L L H LHLLG+DH D+ M L+ ++L+ Sbjct: 112 TAQQQALTQNHSLARELAWLTAHACLHLLGWDHPDETSLLEMLSLQETLLK 162 >gi|325963343|ref|YP_004241249.1| hypothetical protein Asphe3_19600 [Arthrobacter phenanthrenivorans Sphe3] gi|323469430|gb|ADX73115.1| conserved hypothetical protein TIGR00043 [Arthrobacter phenanthrenivorans Sphe3] Length = 157 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 18/155 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L L +F + F+ ELS++ D +E L Sbjct: 1 MSIEVNNESGVQVDEAELVMLSRYIFEQ---------LFIHPQ-AELSILLVDEPAMEKL 50 Query: 71 NFEYRGIDKP--TNVLSFP----TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + E +D+P T+VLS P T MLGDI + ++ +++A G ++ Sbjct: 51 HIEL--MDEPGSTDVLSVPMDELTPGTPDRPTPQGMLGDIAICPQVAQMQAKNAGHTLQD 108 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ L HG LHLLGYDH + ++ M GL+R +L Sbjct: 109 EMLLLTTHGILHLLGYDHAEPEEKAEMFGLQRELL 143 >gi|118580450|ref|YP_901700.1| hypothetical protein Ppro_2034 [Pelobacter propionicus DSM 2379] gi|118503160|gb|ABK99642.1| protein of unknown function UPF0054 [Pelobacter propionicus DSM 2379] Length = 127 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 2/103 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS+ I +N +Y D+PTNV+SF SL LGD+V++ + E Sbjct: 7 TELSISIVGDRAIRRINRDYLNRDRPTNVISFSLQEGECGAIPSLALGDVVISADTALRE 66 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLE 155 A G EF L L++HG LHL GYDH +++A ME E Sbjct: 67 AEEGGMEFFERLCFLLLHGTLHLCGYDHERSGEEEAARMEARE 109 >gi|213965812|ref|ZP_03394004.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213951571|gb|EEB62961.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length = 177 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSS--LMLGDIVLA 107 ELS+ D IE L+ + + PT+V+SFP D S MLGDIVL Sbjct: 35 AELSIHIVDLKTIEDLHVRWLDLPGPTDVMSFPMDELTPGSGRPDAASPGPAMLGDIVLC 94 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E +A G + LV L +HG LHLLGYDHV ++ M L+ +L D Sbjct: 95 PEFAAGQAERAGHPLSHELVLLTVHGVLHLLGYDHVTAEEERQMFSLQNGLLAD 148 >gi|146319053|ref|YP_001198765.1| metalloprotease [Streptococcus suis 05ZYH33] gi|166200391|sp|A4VW76|RRMF_STRSY RecName: Full=Probable rRNA maturation factor gi|145689859|gb|ABP90365.1| hypothetical protein SSU05_1399 [Streptococcus suis 05ZYH33] Length = 165 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTA---FASSD-----GCSSLM---- 100 E+++ F D+ R+ +N EYRGID+PT+V+S P + F D + +M Sbjct: 37 EMAVTFVDNKRVHEVNLEYRGIDRPTDVVSLEYKPESEIVFDEEDLLDNPELAEMMEDFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G +E + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELYISIDKAREQAEDYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMLGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|327382542|gb|AEA54018.1| Probable rRNA maturation factor [Lactobacillus casei LC2W] Length = 120 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 4/115 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEI 110 E+S+ IE +N EYR D+ T+V+SF D + +GD+ + Sbjct: 5 TEMSITLVGDDEIERINREYRETDRVTDVISFAIEEGEDDLPLLPGMAKNIGDLFIDPLT 64 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + A G FE L + ++HGFLHL GYDH+ +D VM L++ IL G+ Sbjct: 65 VRRHAEEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKILAAYGLT 119 >gi|303239955|ref|ZP_07326477.1| protein of unknown function UPF0054 [Acetivibrio cellulolyticus CD2] gi|302592434|gb|EFL62160.1| protein of unknown function UPF0054 [Acetivibrio cellulolyticus CD2] Length = 162 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 11/98 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD-----------I 104 E+S++F D I +N E+R IDKPT+VLSFP +S I Sbjct: 40 EISVMFVDDEGIREINREHRSIDKPTDVLSFPIVDMYEGVINSDDGDFDLDEDLLLLGDI 99 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 V++ E+ +++A G FE L L+ HG HLLGYDH Sbjct: 100 VISLEMTKLQAQEYGHSFERELAFLLTHGVFHLLGYDH 137 >gi|146321259|ref|YP_001200970.1| metalloprotease [Streptococcus suis 98HAH33] gi|223932648|ref|ZP_03624647.1| protein of unknown function UPF0054 [Streptococcus suis 89/1591] gi|253752116|ref|YP_003025257.1| hypothetical protein SSUSC84_1260 [Streptococcus suis SC84] gi|253753941|ref|YP_003027082.1| hypothetical protein SSU1227 [Streptococcus suis P1/7] gi|253755184|ref|YP_003028324.1| hypothetical protein SSUBM407_0562 [Streptococcus suis BM407] gi|330832406|ref|YP_004401231.1| putative metalloprotease [Streptococcus suis ST3] gi|166231363|sp|A4W2I1|RRMF_STRS2 RecName: Full=Probable rRNA maturation factor gi|145692065|gb|ABP92570.1| hypothetical protein SSU98_1412 [Streptococcus suis 98HAH33] gi|223898618|gb|EEF64980.1| protein of unknown function UPF0054 [Streptococcus suis 89/1591] gi|251816405|emb|CAZ52036.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251817648|emb|CAZ55396.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251820187|emb|CAR46557.1| conserved hypothetical protein [Streptococcus suis P1/7] gi|292558698|gb|ADE31699.1| hypothetical protein SSGZ1_1242 [Streptococcus suis GZ1] gi|319758492|gb|ADV70434.1| putative metalloprotease [Streptococcus suis JS14] gi|329306629|gb|AEB81045.1| putative metalloprotease [Streptococcus suis ST3] Length = 165 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTA---FASSD-----GCSSLM---- 100 E+++ F D+ R+ +N EYRGID+PT+V+S P + F D + +M Sbjct: 37 EMAVTFVDNKRVHEVNLEYRGIDRPTDVVSLEYKPESEIVFDEEDLLDNPELAEMMEDFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G +E + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELYISIDKAREQAEDYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|317132157|ref|YP_004091471.1| protein of unknown function UPF0054 [Ethanoligenens harbinense YUAN-3] gi|315470136|gb|ADU26740.1| protein of unknown function UPF0054 [Ethanoligenens harbinense YUAN-3] Length = 164 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 9/135 (6%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----FASSDGC 96 + L ++G+ E E+++ F D +I+ LN +YR D T+VLSFP F + Sbjct: 31 ATLANEGF---EGSAEVNVTFVDDAQIKELNAQYRHKDTATDVLSFPMGENGKFDLNPDT 87 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLE 155 + +LGD+V++ E +A G ++ + L +H LH+LGYDH +A M E Sbjct: 88 GAYVLGDVVISLETATAQAEKYGHSLQHEVAFLTVHSMLHILGYDHEQGGIEAVRMHEHE 147 Query: 156 RSILEDLGI-NDPYE 169 I+ LG D YE Sbjct: 148 DVIMNALGFPRDVYE 162 >gi|191638507|ref|YP_001987673.1| Putative metalloprotease LSEI_1518 [Lactobacillus casei BL23] gi|238693043|sp|B3WEL4|RRMF_LACCB RecName: Full=Probable rRNA maturation factor gi|190712809|emb|CAQ66815.1| Putative metalloprotease LSEI_1518 [Lactobacillus casei BL23] gi|327385739|gb|AEA57213.1| Probable rRNA maturation factor [Lactobacillus casei BD-II] Length = 152 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 4/115 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEI 110 E+S+ IE +N EYR D+ T+V+SF D + +GD+ + Sbjct: 37 TEMSITLVGDDEIERINREYRETDRVTDVISFAIEEGEDDLPLLPGMAKNIGDLFIDPLT 96 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + A G FE L + ++HGFLHL GYDH+ +D VM L++ IL G+ Sbjct: 97 VRRHAEEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKILAAYGLT 151 >gi|293610873|ref|ZP_06693173.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827217|gb|EFF85582.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 158 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/117 (43%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 E+ + D + LN +YR DKPTNVLSFP+ +L LGD+V+ ++ Sbjct: 41 EIGVACVDLDESQQLNLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQ 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 EA K +NH HL++HG LHLLGYDH D+DA MEGLE IL + I +PY+ Sbjct: 101 EALEQKKTAQNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKINIANPYQ 157 >gi|227872335|ref|ZP_03990689.1| possible metal-dependent hydrolase [Oribacterium sinus F0268] gi|227841818|gb|EEJ52094.1| possible metal-dependent hydrolase [Oribacterium sinus F0268] Length = 141 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 16/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------------CSS 98 V LS+ F +S + LN RGID T+VLSFP G Sbjct: 14 VSLSVSFIESEEMRELNLSQRGIDYATDVLSFPLLSLDPPGSFPESLEEEWGNFDPETGE 73 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LMLGDIVL ++ ++ +A G E L LI H LHL YDH+++++ ME + I Sbjct: 74 LMLGDIVLNWDKVKEQAESYGHSLERELAFLIAHSLLHLFSYDHMEEEERKEMEQKQEEI 133 Query: 159 LEDLG 163 LE+ G Sbjct: 134 LENRG 138 >gi|310779143|ref|YP_003967476.1| protein of unknown function UPF0054 [Ilyobacter polytropus DSM 2926] gi|309748466|gb|ADO83128.1| protein of unknown function UPF0054 [Ilyobacter polytropus DSM 2926] Length = 154 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 72/126 (57%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K + ++ + Y + V +S++ TD+ I+ +N +YRG D PT+V+SF + Sbjct: 25 KYIKGVLEEEYPEAKKPVYISMLLTDNENIQIVNRDYRGKDTPTDVISFAYHETEFEIGP 84 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 LGDIV++ E +E +A G F+ +++ HG LHLLGYDH++D+D +M E Sbjct: 85 YDTLGDIVISLERVEEQAEDYGHNFQREFYYVLTHGLLHLLGYDHIEDEDKSIMREKEEE 144 Query: 158 ILEDLG 163 IL+ G Sbjct: 145 ILKKHG 150 >gi|113478351|ref|YP_724412.1| putative metalloprotease [Trichodesmium erythraeum IMS101] gi|122964299|sp|Q10UY5|RRMF_TRIEI RecName: Full=Probable rRNA maturation factor gi|110169399|gb|ABG53939.1| protein of unknown function UPF0054 [Trichodesmium erythraeum IMS101] Length = 183 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 8/115 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAY 108 ELSL TD I+ LN +YR ++PT+VL+F P D L LGDIV++ Sbjct: 60 ELSLRLTDDSEIQILNNKYRYQNQPTDVLAFANLEVDIPQP-EVVDSDLQLYLGDIVISV 118 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E +A G L L HGFLHLLG+DH+D + M + +L +G Sbjct: 119 ETAFQQAKQQGHPLITELTWLAAHGFLHLLGWDHLDQESWQKMVKQQLFLLNAVG 173 >gi|186681803|ref|YP_001864999.1| metalloprotease [Nostoc punctiforme PCC 73102] gi|186464255|gb|ACC80056.1| protein of unknown function UPF0054 [Nostoc punctiforme PCC 73102] Length = 179 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 6/115 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---FASSD---GCSSLMLGDIVLAYE 109 E+ L TD +I+ LN +YR +KPT+VL+F F S L LGDI+++ + Sbjct: 58 EIGLCLTDDSQIQELNAQYRQQNKPTDVLAFAALEVDFPQSKEMLASVPLYLGDIIVSVD 117 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A L L HG LHLLG+DH D++ M + +L +GI Sbjct: 118 TAQRQAKQQEHSLPTELAWLASHGLLHLLGWDHPDEESLGRMLKQQVRLLNAIGI 172 >gi|291544276|emb|CBL17385.1| conserved hypothetical protein TIGR00043 [Ruminococcus sp. 18P13] Length = 166 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 21/150 (14%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 G + +R C+ V A +F ++ E+S+ F + I LN YR D T+ Sbjct: 20 GIRLLIRRCCQAVLATE--------HFDRD--AEVSVSFVSNQEIRNLNKIYRNKDSVTD 69 Query: 83 VLSFPTAFASSDGCSSL-------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 VLSFP SDG + + +LGD+V++ E +A+ G E + L +H L Sbjct: 70 VLSFPLL---SDGKADVNQETGYVLLGDVVISLETAFKQAHNFGHSLEREVGFLTVHSML 126 Query: 136 HLLGYDH-VDDKDACVMEGLERSILEDLGI 164 HLLGYDH D M E ++LE LGI Sbjct: 127 HLLGYDHETSPLDERKMREKEEAVLEKLGI 156 >gi|163814101|ref|ZP_02205493.1| hypothetical protein COPEUT_00254 [Coprococcus eutactus ATCC 27759] gi|158450550|gb|EDP27545.1| hypothetical protein COPEUT_00254 [Coprococcus eutactus ATCC 27759] Length = 170 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 16/132 (12%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDG-----CSS------ 98 + E++++ TD+ I +N + R ID+ T+VLSFP T + DG C + Sbjct: 37 VCEVNVLLTDNDSIHEINNQQRNIDRATDVLSFPLIDYTIPGNFDGLEDSRCDNFDLTTG 96 Query: 99 -LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 L+LGDIV++ + + +A L L+ H LHL GYDH+++ + VME ++ Sbjct: 97 ELLLGDIVISIDKVYEQAAEYNHSKTRELAFLVAHSMLHLSGYDHMEEDERKVMEDMQEK 156 Query: 158 ILEDLGINDPYE 169 IL G YE Sbjct: 157 ILTTKGYTRDYE 168 >gi|291456691|ref|ZP_06596081.1| putative metalloprotease [Bifidobacterium breve DSM 20213] gi|291381968|gb|EFE89486.1| putative metalloprotease [Bifidobacterium breve DSM 20213] Length = 183 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSL--MLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP DG + + +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAELHMRWMSLEGPTDVMSFPMDELRPGDGKTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMLLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|24214384|ref|NP_711865.1| putative metal-dependent hydrolase [Leptospira interrogans serovar Lai str. 56601] gi|46577486|sp|Q8F5J7|RRMF_LEPIN RecName: Full=Probable rRNA maturation factor gi|24195321|gb|AAN48883.1| predicted metal-dependent hydrolase [Leptospira interrogans serovar Lai str. 56601] Length = 141 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 25/144 (17%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF- 90 C+++F K +++ + ELSL+ ++ +N RG DK T+VLSFP F Sbjct: 3 CKILFRKELND----------SECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFD 52 Query: 91 -----------ASSDG--CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 SSD + LG+IV++ + ++ +A +G ++ L++HGFLHL Sbjct: 53 FSPLQKILPKNTSSDQKMFPPIALGEIVISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHL 112 Query: 138 LGYDH-VDDKDACVMEGLERSILE 160 LGYDH DK+ +M+ E LE Sbjct: 113 LGYDHERGDKEEHIMKLKEDECLE 136 >gi|295094824|emb|CBK83915.1| conserved hypothetical protein TIGR00043 [Coprococcus sp. ART55/1] Length = 170 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 16/130 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDG------------CSSL 99 E++++ TD+ I +N + R ID+ T+VLSFP T + DG L Sbjct: 39 EVNVLLTDNDSIHEINNQQRNIDRATDVLSFPLIDYTIPGNFDGLEDSRCDYFDLTTDEL 98 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDIV++ + + +A L L+ H LHL GYDH++D + VME ++ IL Sbjct: 99 LLGDIVISIDKVYEQATEYNHSKTRELAFLVAHSMLHLSGYDHMEDDERRVMEEMQEKIL 158 Query: 160 EDLGINDPYE 169 G YE Sbjct: 159 TMKGYTRDYE 168 >gi|126643046|ref|YP_001086030.1| hypothetical protein A1S_3031 [Acinetobacter baumannii ATCC 17978] Length = 110 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/110 (47%), Positives = 67/110 (60%), Gaps = 6/110 (5%) Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGK 120 +SH+ LN +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K Sbjct: 3 ESHQ---LNLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKK 59 Query: 121 EFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 +NH HL++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 60 TAQNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 109 >gi|120404789|ref|YP_954618.1| putative metalloprotease [Mycobacterium vanbaalenii PYR-1] gi|145558818|sp|A1TBR2|RRMF_MYCVP RecName: Full=Probable rRNA maturation factor gi|119957607|gb|ABM14612.1| protein of unknown function UPF0054 [Mycobacterium vanbaalenii PYR-1] Length = 184 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 15/132 (11%) Query: 43 LISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TA 89 LIS FV + ELS++ D+ + L+ + + PT+V+SFP Sbjct: 18 LISVARFVIGKMDVNPAAELSMLLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGGRP 77 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 A G S MLGDIVL E +A G L L +HG LHLLGYDH + + Sbjct: 78 DAPEPGPS--MLGDIVLCPEFAAKQAADAGHTLGQELALLTVHGVLHLLGYDHAEPDEEK 135 Query: 150 VMEGLERSILED 161 M L+R +LE+ Sbjct: 136 EMFALQRELLEE 147 >gi|217967710|ref|YP_002353216.1| protein of unknown function UPF0054 [Dictyoglomus turgidum DSM 6724] gi|217336809|gb|ACK42602.1| protein of unknown function UPF0054 [Dictyoglomus turgidum DSM 6724] Length = 142 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 9/124 (7%) Query: 40 VSNLISKGYFVKE----NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 V N + K F KE N ++S+V D +I LN +YRG D PT+VLSF Sbjct: 20 VKNFV-KEVFKKEGFLPNKYDISVVLVDDEKIRELNSKYRGKDTPTDVLSFSLG----KD 74 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 ++G+I ++ + +I+A K + + L +HG LH+LGYDH +D++ ME Sbjct: 75 PKGRIVGEIYISIDTAKIQAKENNKTLIDEVAFLTLHGLLHILGYDHENDEEYEKMEKET 134 Query: 156 RSIL 159 + ++ Sbjct: 135 KKLI 138 >gi|116072020|ref|ZP_01469288.1| hypothetical protein BL107_07709 [Synechococcus sp. BL107] gi|116065643|gb|EAU71401.1| hypothetical protein BL107_07709 [Synechococcus sp. BL107] Length = 180 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 2/132 (1%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + F ++ +L + V L L FTD I LN E+R PT+VLSF + Sbjct: 36 IEFIRSNPDLSCPSVVRQAPEVSLGLRFTDDAGITELNSEWRQRSGPTDVLSFAALDDTP 95 Query: 94 DGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 D +++ LGDI+++ + + +A L LI HG LHLLG+DH D++ M Sbjct: 96 DWLEGAAVELGDIIVSLDTAQRQAQDHDHSLGYELHWLISHGLLHLLGWDHPDERSLRAM 155 Query: 152 EGLERSILEDLG 163 L+ +L+ G Sbjct: 156 LDLQERLLDSTG 167 >gi|300866177|ref|ZP_07110895.1| putative metalloprotease Tery_5027 [Oscillatoria sp. PCC 6506] gi|300335833|emb|CBN56055.1| putative metalloprotease Tery_5027 [Oscillatoria sp. PCC 6506] Length = 177 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 12/119 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---------PTAFASSDGCSSLMLGDIVL 106 ELSL T ++TLN +YR ++PT+VL+F P +S L LGDIV+ Sbjct: 59 ELSLRLTGDPEMQTLNSQYRQQNQPTDVLAFAALEVNCPHPQEMVAS---MPLYLGDIVI 115 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + + +A L L HGFLHLLG+DH D+ M + +L+ +G+ Sbjct: 116 SVDTAHRQAQQQHHPLTTELAWLAAHGFLHLLGWDHPDEDSLNSMLNQQEILLKTIGLT 174 >gi|145352030|ref|XP_001420362.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580596|gb|ABO98655.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 411 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 5/109 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+ I +LN YR D T+VLSFP A S G ++ LGD++++ + +A Sbjct: 5 ELSVALCSDEYIRSLNAGYREKDSATDVLSFP---AESFGPMAV-LGDVIVSVDTASAQA 60 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLG 163 +G + L++HG LHLLG DH V + +A VM E+ +L+ LG Sbjct: 61 REVGHSLRDECRVLLVHGTLHLLGMDHEVSESEAEVMAAAEQEVLKALG 109 >gi|116495001|ref|YP_806735.1| metal-dependent hydrolase [Lactobacillus casei ATCC 334] gi|227534992|ref|ZP_03965041.1| metal-dependent hydrolase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631405|ref|ZP_04674436.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066563|ref|YP_003788586.1| putative metal-dependent hydrolase [Lactobacillus casei str. Zhang] gi|122263582|sp|Q038S9|RRMF_LACC3 RecName: Full=Probable rRNA maturation factor gi|116105151|gb|ABJ70293.1| Predicted metal-dependent hydrolase [Lactobacillus casei ATCC 334] gi|227187383|gb|EEI67450.1| metal-dependent hydrolase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525870|gb|EEQ64871.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438970|gb|ADK18736.1| Predicted metal-dependent hydrolase [Lactobacillus casei str. Zhang] Length = 152 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 5/132 (3%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--- 94 K + K + EN E+S+ IE +N EYR D+ T+V+SF D Sbjct: 21 KKLVAFCGKQLKLPEN-TEMSITLVGDDEIERINREYRETDRVTDVISFAIEEGEDDLPL 79 Query: 95 -GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 + +GD+ + + A G FE L + ++HGFLHL GYDH+ +D VM Sbjct: 80 LPGMAKNIGDLFIDPLTVRRHAEDYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIP 139 Query: 154 LERSILEDLGIN 165 L++ IL G+ Sbjct: 140 LQKKILAAYGLT 151 >gi|118586861|ref|ZP_01544295.1| metal-dependent hydrolase [Oenococcus oeni ATCC BAA-1163] gi|118432693|gb|EAV39425.1| metal-dependent hydrolase [Oenococcus oeni ATCC BAA-1163] Length = 169 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVL 106 +K+N E+S+ F + +I +N EYR D+ T+V+SF + DG + LGD+ + Sbjct: 51 LKQN-YEMSVNFVNDEKIHQINKEYRNTDRATDVISFALEESDRIHIDGVAE-ELGDLFI 108 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA-CVMEGLERSILEDLGI 164 + + +A + L +L +HGFLHLLGYDH + A M GL+ ILE G+ Sbjct: 109 SLDHAHAQAEEYLHSYNRELAYLAVHGFLHLLGYDHTRSQAAEDEMFGLQDKILEGYGL 167 >gi|23465435|ref|NP_696038.1| putative metalloprotease [Bifidobacterium longum NCC2705] gi|46191169|ref|ZP_00120251.2| COG0319: Predicted metal-dependent hydrolase [Bifidobacterium longum DJO10A] gi|189439458|ref|YP_001954539.1| putative metalloprotease [Bifidobacterium longum DJO10A] gi|227545911|ref|ZP_03975960.1| metalloprotease [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622041|ref|ZP_04665072.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454042|ref|YP_003661185.1| hypothetical protein BLJ_0890 [Bifidobacterium longum subsp. longum JDM301] gi|312132866|ref|YP_004000205.1| metal-dependent hydrolase [Bifidobacterium longum subsp. longum BBMN68] gi|317482194|ref|ZP_07941216.1| hypothetical protein HMPREF0177_00609 [Bifidobacterium sp. 12_1_47BFAA] gi|322688981|ref|YP_004208715.1| hypothetical protein BLIF_0794 [Bifidobacterium longum subsp. infantis 157F] gi|322690950|ref|YP_004220520.1| hypothetical protein BLLJ_0760 [Bifidobacterium longum subsp. longum JCM 1217] gi|29428213|sp|Q8G5Z0|RRMF_BIFLO RecName: Full=Probable rRNA maturation factor gi|238692063|sp|B3DSC2|RRMF_BIFLD RecName: Full=Probable rRNA maturation factor gi|23326086|gb|AAN24674.1| conserved hypothetical protein with duf0054 [Bifidobacterium longum NCC2705] gi|189427893|gb|ACD98041.1| Putative metal-dependent hydrolase [Bifidobacterium longum DJO10A] gi|227213545|gb|EEI81394.1| metalloprotease [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515232|gb|EEQ55099.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516986|emb|CBK70602.1| conserved hypothetical protein TIGR00043 [Bifidobacterium longum subsp. longum F8] gi|296183473|gb|ADH00355.1| protein of unknown function UPF0054 [Bifidobacterium longum subsp. longum JDM301] gi|311773835|gb|ADQ03323.1| Putative metal-dependent hydrolase [Bifidobacterium longum subsp. longum BBMN68] gi|316916332|gb|EFV37732.1| hypothetical protein HMPREF0177_00609 [Bifidobacterium sp. 12_1_47BFAA] gi|320455806|dbj|BAJ66428.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320460317|dbj|BAJ70937.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 182 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSL--MLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP DG + + +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAELHMRWMNLEGPTDVMSFPMDELRPGDGKTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMLLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|68535676|ref|YP_250381.1| putative metalloprotease [Corynebacterium jeikeium K411] gi|260578250|ref|ZP_05846166.1| metalloprotease [Corynebacterium jeikeium ATCC 43734] gi|123651314|sp|Q4JWP4|RRMF_CORJK RecName: Full=Probable rRNA maturation factor gi|68263275|emb|CAI36763.1| conserved hypothetical protein [Corynebacterium jeikeium K411] gi|258603552|gb|EEW16813.1| metalloprotease [Corynebacterium jeikeium ATCC 43734] Length = 182 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGC--SSLMLGDIVLA 107 ELS+ D IE L+ + + PT+V+SFP + D S MLGDI+L Sbjct: 36 AELSIHIVDLETIEDLHVRWMDLPGPTDVMSFPMDELTPGWGRKDAAEPSPAMLGDIMLC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + E +A G + L L +HG LHLLG+DHV +D M L+ IL Sbjct: 96 PDFAEGQATRAGHSLAHELDLLTVHGVLHLLGFDHVTPEDEQKMFALQNEIL 147 >gi|45657953|ref|YP_002039.1| hypothetical protein LIC12105 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|62901441|sp|Q72QK8|RRMF_LEPIC RecName: Full=Probable rRNA maturation factor gi|45601194|gb|AAS70676.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 141 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 25/144 (17%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF- 90 C+++F K +++ + ELSL+ ++ +N RG DK T+VLSFP F Sbjct: 3 CKILFRKELND----------SECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFD 52 Query: 91 -----------ASSDG--CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 SSD + LG+IV++ + ++ +A +G ++ L++HGFLHL Sbjct: 53 FSPLQKILPKNTSSDQKMFPPVALGEIVISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHL 112 Query: 138 LGYDH-VDDKDACVMEGLERSILE 160 LGYDH DK+ +M+ E LE Sbjct: 113 LGYDHERGDKEEHIMKLKEDECLE 136 >gi|57237128|ref|YP_178140.1| putative metalloprotease [Campylobacter jejuni RM1221] gi|86149543|ref|ZP_01067773.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151268|ref|ZP_01069483.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 260.94] gi|88597229|ref|ZP_01100464.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 84-25] gi|205356496|ref|ZP_03223260.1| hypothetical protein Cj8421_0120 [Campylobacter jejuni subsp. jejuni CG8421] gi|218561802|ref|YP_002343581.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315123723|ref|YP_004065727.1| hypothetical protein ICDCCJ07001_114 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|46577566|sp|Q9PJ06|RRMF_CAMJE RecName: Full=Probable rRNA maturation factor gi|62901174|sp|Q5HX45|RRMF_CAMJR RecName: Full=Probable rRNA maturation factor gi|57165932|gb|AAW34711.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni RM1221] gi|85839811|gb|EAQ57070.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841615|gb|EAQ58862.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 260.94] gi|88190290|gb|EAQ94264.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 84-25] gi|112359508|emb|CAL34292.1| conserved hypothetical protein Cj0121 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205345683|gb|EDZ32322.1| hypothetical protein Cj8421_0120 [Campylobacter jejuni subsp. jejuni CG8421] gi|284925414|gb|ADC27766.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni IA3902] gi|315017445|gb|ADT65538.1| hypothetical protein ICDCCJ07001_114 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057561|gb|ADT71890.1| predicted metal-dependent hydrolase [Campylobacter jejuni subsp. jejuni S3] gi|315926941|gb|EFV06303.1| uncharacterized protein family UPF0054 family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 135 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ LVF DS ++ +N E R DK T+VLSFP SL LG +V+ ++ + +A Sbjct: 22 DVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDE----SLPLGSVVINVDLAKEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 LG +E + L IH LHLLG+DH +D Sbjct: 78 KELGHSYEEEISLLFIHAMLHLLGFDHEND 107 >gi|189425788|ref|YP_001952965.1| hypothetical protein Glov_2732 [Geobacter lovleyi SZ] gi|189422047|gb|ACD96445.1| protein of unknown function UPF0054 [Geobacter lovleyi SZ] Length = 128 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS+ I LN EY G D+PTNV+SF + LGD+V++ + E Sbjct: 7 TELSVTVVGDRAIHRLNREYLGKDRPTNVISFSLQEGEFGDLTPHALGDVVISADTAADE 66 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSILE 160 A G L+ L++HG LHL GYDH + +A ME ER I + Sbjct: 67 AQSCGWGGYERLIFLLLHGILHLTGYDHERSGEAEARRMERKEREIWK 114 >gi|315929911|gb|EFV09070.1| uncharacterized protein family UPF0054 family protein [Campylobacter jejuni subsp. jejuni 305] Length = 135 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ LVF DS ++ +N E R DK T+VLSFP SL LG +V+ ++ + +A Sbjct: 22 DVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDE----SLPLGSVVINVDLAKEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 LG +E + L IH LHLLG+DH +D Sbjct: 78 KELGHSYEEEISLLFIHAMLHLLGFDHEND 107 >gi|295099664|emb|CBK88753.1| conserved hypothetical protein TIGR00043 [Eubacterium cylindroides T2-87] Length = 151 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAYEIIEI 113 LS++F +I +N EYR ID PT+V+SF SD S LGDI + + I Sbjct: 40 LSVIFVTPEQIHEINKEYRKIDCPTDVISFALQDDLSDVLIEESMCELGDIFINVQAIRD 99 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +A G L HG LHL+GYDH++ ++ VM L+ IL+++ Sbjct: 100 QAKEYGHSLRREACFLFCHGLLHLMGYDHMEPEEEKVMFELQDVILDEV 148 >gi|52081079|ref|YP_079870.1| putative metalloprotease [Bacillus licheniformis ATCC 14580] gi|52786458|ref|YP_092287.1| putative metalloprotease [Bacillus licheniformis ATCC 14580] gi|319644963|ref|ZP_07999196.1| metalloprotease [Bacillus sp. BT1B_CT2] gi|59799095|sp|Q65H70|RRMF_BACLD RecName: Full=Probable rRNA maturation factor gi|52004290|gb|AAU24232.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52348960|gb|AAU41594.1| YqfG [Bacillus licheniformis ATCC 14580] gi|317392772|gb|EFV73566.1| metalloprotease [Bacillus sp. BT1B_CT2] Length = 158 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 12/120 (10%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---------MLGDIV 105 E+S+ ++ I+ +N EYRG D PT+V+SF DG + +LGDI+ Sbjct: 39 AEVSVTIVNNEEIQKINKEYRGKDYPTDVISFAL---EEDGEGEVEIIGADMPPVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G L L +HGFLHLLGYDH+ +++ M ++ IL G++ Sbjct: 96 ISVDKAREQAEEYGHSLMRELGFLTVHGFLHLLGYDHMTEEEEKEMFTKQKEILNRYGLS 155 >gi|168307881|ref|ZP_02690556.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902725|gb|EDT49014.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 155 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 3/104 (2%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 F D I+ +N YR D T+V+SF AF + + L LG++ + Y+ + +A+ Sbjct: 45 FVDEKTIQKINKNYRNKDYITDVISF--AFDDGEIITPL-LGEMYICYQKVVDQASQFAH 101 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE L L HG LHLLGYDH+ +D +M L+ IL +L I Sbjct: 102 SFERELCFLFTHGLLHLLGYDHIKIEDEKIMFALQDEILNELKI 145 >gi|283955565|ref|ZP_06373060.1| hypothetical protein C1336_000020094 [Campylobacter jejuni subsp. jejuni 1336] gi|283793026|gb|EFC31800.1| hypothetical protein C1336_000020094 [Campylobacter jejuni subsp. jejuni 1336] Length = 134 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ LVF DS ++ +N E R DK T+VLSFP SL LG +V+ ++ + +A Sbjct: 22 DVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDE----SLPLGSVVINVDLAKEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 LG +E + L IH LHLLG+DH +D Sbjct: 78 KELGHSYEEEISLLFIHAMLHLLGFDHEND 107 >gi|86153617|ref|ZP_01071820.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842578|gb|EAQ59790.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni HB93-13] Length = 134 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ LVF DS ++ +N E R DK T+VLSFP SL LG +V+ ++ + +A Sbjct: 22 DVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDE----SLPLGSVVINVDLAKEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 LG +E + L IH LHLLG+DH +D Sbjct: 78 KELGHSYEEEISLLFIHAMLHLLGFDHEND 107 >gi|300780717|ref|ZP_07090571.1| metalloprotease [Corynebacterium genitalium ATCC 33030] gi|300532424|gb|EFK53485.1| metalloprotease [Corynebacterium genitalium ATCC 33030] Length = 195 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLA 107 E+++ DS + L+ + + PT+V+SFP +A + MLGDI+L Sbjct: 36 TEVTITCVDSPTMADLHMRWMDLPGPTDVMSFPMDELSPGSARPDAAAIGPAMLGDIILC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + +A G + + L +HG LHLLGYDH D M GL+ IL D Sbjct: 96 PDYDRKQAEAAGHPLGHEMALLTVHGVLHLLGYDHATPADEREMFGLQNEILAD 149 >gi|229817682|ref|ZP_04447964.1| hypothetical protein BIFANG_02953 [Bifidobacterium angulatum DSM 20098] gi|229785471|gb|EEP21585.1| hypothetical protein BIFANG_02953 [Bifidobacterium angulatum DSM 20098] Length = 181 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I ++ + ++ PT+V+SFP S++M LGDIV+ + Sbjct: 36 DLTILFVDPDPIAQMHMHWMNLEGPTDVMSFPMDELRPGNGSTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV+ + M GL+R +L Sbjct: 96 QQAAAAGHGVLQEMLLLTIHGILHLLGYDHVNAEQERQMFGLQRQLL 142 >gi|159026769|emb|CAO89056.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 170 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 6/111 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---FASSDG---CSSLMLGDIVLAYE 109 ELSL TD I+T N +YR D+PT+VL+F +G L LGDI+++ E Sbjct: 52 ELSLRLTDDREIQTYNSQYRHKDQPTDVLAFAALEVDLPVDEGILETEPLYLGDIIISVE 111 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + +A L L H LHLLG+DH D+ M L+ ++L+ Sbjct: 112 TAQQQALTQNHSLARELAWLTAHACLHLLGWDHPDETSLLEMLSLQETLLK 162 >gi|121613427|ref|YP_999845.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni 81-176] gi|167004816|ref|ZP_02270574.1| hypothetical protein Cjejjejuni_00700 [Campylobacter jejuni subsp. jejuni 81-176] gi|145572759|sp|A1VXK4|RRMF_CAMJJ RecName: Full=Probable rRNA maturation factor gi|87250280|gb|EAQ73238.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 81-176] Length = 134 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ LVF DS ++ +N E R DK T+VLSFP SL LG +V+ ++ + +A Sbjct: 22 DVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDE----SLPLGSVVINVDLAKEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 LG +E + L IH LHLLG+DH +D Sbjct: 78 KELGHSYEEEISLLFIHAMLHLLGFDHEND 107 >gi|168702468|ref|ZP_02734745.1| hypothetical protein GobsU_23272 [Gemmata obscuriglobus UQM 2246] Length = 146 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 6/129 (4%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K + + +G VK V +L F D+ I LN ++ ++PT+VL+FP +D + Sbjct: 20 KDAARAVLEGEGVKAGKV--TLAFVDNPHIHRLNKQFLNHNEPTDVLTFPY----TDPGA 73 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + G++V+ YE+ + A F L+ ++HG LHL GYD DD M ER Sbjct: 74 KSLEGEVVIGYEVAKEYAADRNHAFNLELLLYVVHGCLHLTGYDDTDDDSEREMRAKERE 133 Query: 158 ILEDLGIND 166 L LG+ D Sbjct: 134 YLTKLGLPD 142 >gi|116491017|ref|YP_810561.1| metal-dependent hydrolase [Oenococcus oeni PSU-1] gi|290890498|ref|ZP_06553573.1| hypothetical protein AWRIB429_0963 [Oenococcus oeni AWRIB429] gi|122276801|sp|Q04F76|RRMF_OENOB RecName: Full=Probable rRNA maturation factor gi|116091742|gb|ABJ56896.1| Predicted metal-dependent hydrolase [Oenococcus oeni PSU-1] gi|290479894|gb|EFD88543.1| hypothetical protein AWRIB429_0963 [Oenococcus oeni AWRIB429] Length = 153 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVL 106 +K+N E+S+ F + +I +N EYR D+ T+V+SF + DG + LGD+ + Sbjct: 35 LKQN-YEMSVNFVNDEKIHQINKEYRNTDRATDVISFALEESDRIHIDGVAE-ELGDLFI 92 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA-CVMEGLERSILEDLGI 164 + + +A + L +L +HGFLHLLGYDH + A M GL+ ILE G+ Sbjct: 93 SLDHAHAQAEEYLHSYNRELAYLAVHGFLHLLGYDHTRSQAAEDEMFGLQDKILEGYGL 151 >gi|157414434|ref|YP_001481690.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni 81116] gi|157385398|gb|ABV51713.1| hypothetical protein C8J_0114 [Campylobacter jejuni subsp. jejuni 81116] gi|307747078|gb|ADN90348.1| Putative metalloprotease [Campylobacter jejuni subsp. jejuni M1] gi|315931515|gb|EFV10482.1| uncharacterized protein family UPF0054 family protein [Campylobacter jejuni subsp. jejuni 327] Length = 134 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ LVF DS ++ +N E R DK T+VLSFP SL LG +V+ ++ + +A Sbjct: 22 DVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDE----SLPLGSVVINVDLAKEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 LG +E + L IH LHLLG+DH +D Sbjct: 78 KELGHSYEEEISLLFIHAMLHLLGFDHEND 107 >gi|322420984|ref|YP_004200207.1| hypothetical protein GM18_3497 [Geobacter sp. M18] gi|320127371|gb|ADW14931.1| protein of unknown function UPF0054 [Geobacter sp. M18] Length = 121 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 2/107 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS+ I LN EY G DK TNV+SF + +LGD+V++ + E Sbjct: 6 AELSISIVGDRAIRVLNREYLGRDKATNVISFAMQEGEFGSVNPDLLGDVVVSVDTAARE 65 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDD--KDACVMEGLERSIL 159 A G+ F + L L++HG LH+ G+DH +A ME ER I Sbjct: 66 AEEGGETFLSRLYFLVLHGILHITGFDHERSGVAEAARMEAKEREIF 112 >gi|220912722|ref|YP_002488031.1| metalloprotease [Arthrobacter chlorophenolicus A6] gi|254801508|sp|B8H8R4|RRMF_ARTCA RecName: Full=Probable rRNA maturation factor gi|219859600|gb|ACL39942.1| protein of unknown function UPF0054 [Arthrobacter chlorophenolicus A6] Length = 157 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 9/127 (7%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP--TNVLSFP----TAFAS 92 A+S I + ++ ELS++ D +E L+ E +D+P T+VLS P T Sbjct: 20 ALSRYIFEQLYIHPQ-AELSILLVDEPAMEKLHIEL--MDEPGATDVLSVPMDDLTPGTP 76 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 MLGDI + ++ +++A G ++ ++ L HG LHLLGYDH + ++ M Sbjct: 77 DRPTPQGMLGDIAICPQVAQVQAKNAGHALQDEMLLLTTHGILHLLGYDHAEPEEKEEMF 136 Query: 153 GLERSIL 159 GL+R +L Sbjct: 137 GLQRELL 143 >gi|153952235|ref|YP_001397375.1| putative metalloprotease [Campylobacter jejuni subsp. doylei 269.97] gi|152939681|gb|ABS44422.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. doylei 269.97] Length = 135 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 4/90 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ LVF DS ++ +N E R DK T+VLSFP SL LG +V+ ++ + +A Sbjct: 22 DVELVFVDSKEMQEINLEQRKQDKTTDVLSFPLENIDE----SLPLGSVVINVDLAKEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 LG +E + L IH LHLLG+DH +D Sbjct: 78 KELGHSYEEEISLLFIHAMLHLLGFDHEND 107 >gi|238060558|ref|ZP_04605267.1| metalloprotease [Micromonospora sp. ATCC 39149] gi|237882369|gb|EEP71197.1| metalloprotease [Micromonospora sp. ATCC 39149] Length = 157 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 9/99 (9%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP---------TAFASSDGCSSLMLGDI 104 + ELS++ D + LN + G D PT+VL+FP +S+ G +LGDI Sbjct: 34 LAELSVLLVDIDYMTELNHRWMGGDGPTDVLAFPMDEGSVDHGPGESSAAGGEPALLGDI 93 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 VL E+ +A G + L L +HG LHLLGYDH Sbjct: 94 VLCPEVAAKQAATAGHSSADELHLLTVHGVLHLLGYDHA 132 >gi|296333310|ref|ZP_06875763.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675185|ref|YP_003866857.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii str. W23] gi|296149508|gb|EFG90404.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413429|gb|ADM38548.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii str. W23] Length = 157 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIV 105 +N E+S+ + I+ +N EYRG D PT+V+SF + +LGDI+ Sbjct: 36 QNQAEVSVTIVTNEDIQQINKEYRGKDTPTDVISFALEEEGEGEVEIVGAEMPPVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A F+ L L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 96 ISADRTREQAEEYNHSFKRELGFLAVHGFLHLLGYDHMTKEEEEEMFTKQKDLLDAYGLK 155 >gi|13358053|ref|NP_078327.1| hypothetical protein UU490 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971447|ref|ZP_02553724.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|170762010|ref|YP_001752574.1| hypothetical protein UPA3_0508 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|29428267|sp|Q9PQ00|RRMF_UREPA RecName: Full=Probable rRNA maturation factor gi|189040230|sp|B1AJD0|RRMF_UREP2 RecName: Full=Probable rRNA maturation factor gi|11356818|pir||A82884 conserved hypothetical UU490 [imported] - Ureaplasma urealyticum gi|6899488|gb|AAF30902.1|AE002147_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827587|gb|ACA32849.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|186701087|gb|EDU19369.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 155 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 3/104 (2%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 F D I+ +N YR D T+V+SF AF + + L LG++ + Y+ + +A+ Sbjct: 45 FVDEKTIQEINKNYRNKDYITDVISF--AFDDGEIITPL-LGEMYICYQKVVDQASQFAH 101 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 FE L L HG LHLLGYDH+ +D +M L+ IL +L I Sbjct: 102 SFERELCFLFTHGLLHLLGYDHIKIEDEKIMFALQDEILNELKI 145 >gi|169632397|ref|YP_001706133.1| hypothetical protein ABSDF0477 [Acinetobacter baumannii SDF] gi|238688242|sp|B0VQX0|RRMF_ACIBS RecName: Full=Probable rRNA maturation factor gi|169151189|emb|CAO99866.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 158 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/117 (43%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 E+ + D LN +YR DKPTN LSFP+ +L LGD+V+ ++ Sbjct: 41 EIGIACVDLEESHQLNLQYREKDKPTNALSFPSDIPEEVLPMLDALPLGDLVICIPVVLQ 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 EA K +NH HL++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 101 EALEQKKTAQNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 157 >gi|166031812|ref|ZP_02234641.1| hypothetical protein DORFOR_01513 [Dorea formicigenerans ATCC 27755] gi|166028265|gb|EDR47022.1| hypothetical protein DORFOR_01513 [Dorea formicigenerans ATCC 27755] Length = 164 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 15/125 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----------TAFASSDGC-----SSL 99 V+++L+ T + I +N ++R ID+ T+VLSFP + F S + C L Sbjct: 38 VQVNLLLTMNDEIHEMNRDFRNIDRATDVLSFPMLEYETPGDFSHFESEEDCFDPETGEL 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDIV++ E + +A G + LI H LHL GYDH+++++ ME L+R IL Sbjct: 98 LLGDIVISKEKVIAQAEEYGHSVKREYAFLIAHSVLHLSGYDHMEEEERIEMETLQREIL 157 Query: 160 EDLGI 164 +L I Sbjct: 158 NELNI 162 >gi|154504368|ref|ZP_02041106.1| hypothetical protein RUMGNA_01872 [Ruminococcus gnavus ATCC 29149] gi|153795297|gb|EDN77717.1| hypothetical protein RUMGNA_01872 [Ruminococcus gnavus ATCC 29149] Length = 165 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 18/146 (12%) Query: 37 AKAVSNLISKGYFVKENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----- 88 K V++L+ + E E++L+ T I +N E+R ID+ T+VLSFP Sbjct: 17 TKEVADLVVEAALEYEGCPYEAEINLLLTTDDEIHRMNEEFRQIDRATDVLSFPMLEYET 76 Query: 89 ----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 A A + LMLGDIV++ E + +A G + LI H LHL Sbjct: 77 PGDFSFVEEEAEAFNPESGELMLGDIVISKEKVLAQAEAYGHSPKREFAFLIAHSMLHLF 136 Query: 139 GYDHVDDKDACVMEGLERSILEDLGI 164 GYDH+++++ VME +R I+E + I Sbjct: 137 GYDHMEEEERLVMEERQREIMEKVQI 162 >gi|295838976|ref|ZP_06825909.1| metalloprotease [Streptomyces sp. SPB74] gi|197695531|gb|EDY42464.1| metalloprotease [Streptomyces sp. SPB74] Length = 165 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVILVDGPAMEQLHVQWMDLPGPTDVMSFPMDELRPPVKDDEQPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ E + E + L L +HG LHLLGYDH + + M GL+++I++ Sbjct: 94 EVAERQGREAPTEHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQQAIVD 147 >gi|260549789|ref|ZP_05824005.1| metal-dependent hydrolase [Acinetobacter sp. RUH2624] gi|260407039|gb|EEX00516.1| metal-dependent hydrolase [Acinetobacter sp. RUH2624] Length = 158 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/117 (43%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 E+ + D LN +YR DKPTNVLSFP+ +L LGD+V+ ++ Sbjct: 41 EIGVACVDLEESHQLNLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQ 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 EA K +NH HL++HG LHLLGYDH + D+DA ME LE IL L I +PY+ Sbjct: 101 EALEQKKTAQNHFAHLLVHGVLHLLGYDHEISDEDAEEMESLEIEILAKLNIANPYQ 157 >gi|255027003|ref|ZP_05298989.1| putative metalloprotease [Listeria monocytogenes FSL J2-003] Length = 138 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 10/106 (9%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSDGCS 97 Y E ELSL FT + I +N EYR D+ T+V+SF + D + Sbjct: 33 YLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLET 92 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 MLGDI+++ E E +A G L L +HG LHLLGYDH+ Sbjct: 93 PRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHM 138 >gi|302545480|ref|ZP_07297822.1| putative metalloprotease [Streptomyces hygroscopicus ATCC 53653] gi|302463098|gb|EFL26191.1| putative metalloprotease [Streptomyces himastatinicus ATCC 53653] Length = 165 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELSL+ D+ +E L+ ++ + PT+V+SFP D +LGDIVL Sbjct: 34 LSELSLIVVDADAMEQLHIQWMDLPGPTDVMSFPMDELRPPVKDDDEPPQGLLGDIVLCP 93 Query: 109 EII--EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 ++ + E G + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 DVAKKQGEEAPTGHSMDEELQLLTVHGVLHLLGYDHEEPDERAEMFGLQAAIID 147 >gi|296119867|ref|ZP_06838421.1| putative metalloprotease [Corynebacterium ammoniagenes DSM 20306] gi|295967021|gb|EFG80292.1| putative metalloprotease [Corynebacterium ammoniagenes DSM 20306] Length = 191 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 55/116 (47%), Gaps = 9/116 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP---------TAFASSDGCSSLMLGDIV 105 VEL++ D IE L+ + ++ PT+V+SFP T + MLGDIV Sbjct: 36 VELTMTCVDLETIEELHVRWMDLEGPTDVMSFPIDEITPGAMTPRPDAPDMGPAMLGDIV 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L E +A+ G + L L HG LHLLGYDH + M L+ +L D Sbjct: 96 LCPAFAERQADAAGHSLSHELALLTTHGCLHLLGYDHGTPSEEQEMFALQNELLAD 151 >gi|29832127|ref|NP_826761.1| putative metalloprotease [Streptomyces avermitilis MA-4680] gi|46577428|sp|Q82BX0|RRMF_STRAW RecName: Full=Probable rRNA maturation factor gi|29609245|dbj|BAC73296.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 165 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP D +LGDIVL Sbjct: 34 LSELSVIVVDADAMEQLHIQWMDLPGPTDVMSFPMDELRPPMKDDDEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ E + + + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVAERQGKEAPTQHSMDEELQLLAVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|302877838|ref|YP_003846402.1| hypothetical protein Galf_0596 [Gallionella capsiferriformans ES-2] gi|302580627|gb|ADL54638.1| protein of unknown function UPF0054 [Gallionella capsiferriformans ES-2] Length = 153 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 12/142 (8%) Query: 34 VVFAKAVSNLISKGYFVK------ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 V + A NL ++ + + + V L+L D LN YRG D TNVL+F Sbjct: 16 VQYVSAAQNLPARPQWRRWIKAALQRDVSLALRIVDEAEGRELNKAYRGRDYATNVLTF- 74 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + D S GD+V+ ++ EA K+ H HL IH LHL GYDH D + Sbjct: 75 -VYDEDDHLS----GDVVICAPVVAREATEQDKDLLTHYAHLAIHAALHLQGYDHEVDAE 129 Query: 148 ACVMEGLERSILEDLGINDPYE 169 A ME LE +++ LG DPY+ Sbjct: 130 AEEMEALETALMLKLGYPDPYK 151 >gi|15644257|ref|NP_229309.1| hypothetical protein TM1509 [Thermotoga maritima MSB8] gi|6686214|sp|Q9X1J7|RRMF_THEMA RecName: Full=Probable rRNA maturation factor gi|4982075|gb|AAD36576.1|AE001799_8 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 150 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 11/139 (7%) Query: 28 LRTLCEVVFAKAVSNLISK-GYFVKENI--VELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +R L E +K + NL K VK+ I V ++++ I+ LN ++RG D+PT+VL Sbjct: 2 IRILGEGKGSKLLENLKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDRPTDVL 61 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-V 143 +FP + G+I + I+E A FE L+ ++IHG LHL GYDH Sbjct: 62 TFPL-------MEEDVYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEF 114 Query: 144 DDKDACVMEGLERSILEDL 162 +DK++ M ++ +E++ Sbjct: 115 EDKNSKEMFEKQKKYVEEV 133 >gi|256825018|ref|YP_003148978.1| hypothetical protein Ksed_11740 [Kytococcus sedentarius DSM 20547] gi|256688411|gb|ACV06213.1| conserved hypothetical protein TIGR00043 [Kytococcus sedentarius DSM 20547] Length = 166 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 9/127 (7%) Query: 42 NLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFAS 92 ++++ F + + EL + F D+ IE L+ ++ + PT+V+SFP Sbjct: 17 DVVAAAQFAMDTLHVNPAAELCIRFVDAAAIEVLHEQWMDLAGPTDVMSFPMDELRPGTP 76 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGDIVL + +A+ LG L+ L +HG LHLLGYDH D D M Sbjct: 77 ERPSEPGVLGDIVLCPTVAAEQASRLGHPVGEELLMLTVHGVLHLLGYDHADPDDEREMF 136 Query: 153 GLERSIL 159 L+ +L Sbjct: 137 TLQAELL 143 >gi|75908994|ref|YP_323290.1| putative metalloprotease [Anabaena variabilis ATCC 29413] gi|123609226|sp|Q3M9E1|RRMF_ANAVT RecName: Full=Probable rRNA maturation factor gi|75702719|gb|ABA22395.1| Protein of unknown function UPF0054 [Anabaena variabilis ATCC 29413] Length = 176 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-----CSSLMLGDIVLAYEI 110 E+ L TD I+ +N +YR +KPT+VL+F A L LGDIV++ Sbjct: 57 EIGLRLTDDTEIQAINAQYRQQNKPTDVLAFAALEADLPQNPEMVAEPLYLGDIVVSINT 116 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A L L HG LHLLG+DH D++ M + +L+ +GI Sbjct: 117 AQRQAGQQEHSLSTELAWLTAHGLLHLLGWDHPDEESLIAMLQQQVVLLDAVGIK 171 >gi|159902741|ref|YP_001550085.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9211] gi|238687124|sp|A9BD43|RRMF_PROM4 RecName: Full=Probable rRNA maturation factor gi|159887917|gb|ABX08131.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9211] Length = 189 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 7/144 (4%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 ALW + + + + + N + N + + L FTD I +N ++R ++ Sbjct: 35 ALWRSNLKVW----IDYVRRNDNYLCPAIVRSVNCLSIGLQFTDDKSIMKINQQWRAKEE 90 Query: 80 PTNVLSFPTAFASSDGCSS---LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 PT+VLSFP S L LGDI+++ + + +A+ + L L+ HG LH Sbjct: 91 PTDVLSFPVIDQDSIAPPPNHFLELGDIIVSVQTAQKQADENNHSLDKELCWLVSHGLLH 150 Query: 137 LLGYDHVDDKDACVMEGLERSILE 160 LLG+DH+++ M + +L+ Sbjct: 151 LLGWDHLNEHSLDQMLSFQDKLLQ 174 >gi|304373107|ref|YP_003856316.1| Putative metalloprotease [Mycoplasma hyorhinis HUB-1] gi|304309298|gb|ADM21778.1| Putative metalloprotease [Mycoplasma hyorhinis HUB-1] gi|330723268|gb|AEC45638.1| Putative metalloprotease [Mycoplasma hyorhinis MCLD] Length = 150 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 7/92 (7%) Query: 57 LSLVFT--DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEII 111 LSL FT D ++ F+Y+G D+ T++LSFP F +S S + LG+I+++Y+ I Sbjct: 38 LSLDFTLIDDEQMRKYYFQYKGKDRTTDILSFP--FVNSFSTSFMKEKFLGEILISYQKI 95 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +A G +L HG HLLGYDH+ Sbjct: 96 QQQAKEYGHSVTREFCYLFTHGVYHLLGYDHI 127 >gi|220702590|pdb|1TVI|A Chain A, Solution Structure Of Tm1509 From Thermotoga Maritima: Vt1, A Nesgc Target Protein Length = 172 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 11/139 (7%) Query: 28 LRTLCEVVFAKAVSNLISK-GYFVKENI--VELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +R L E +K + NL K VK+ I V ++++ I+ LN ++RG D+PT+VL Sbjct: 24 IRILGEGKGSKLLENLKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDRPTDVL 83 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-V 143 +FP + G+I + I+E A FE L+ ++IHG LHL GYDH Sbjct: 84 TFPL-------MEEDVYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEF 136 Query: 144 DDKDACVMEGLERSILEDL 162 +DK++ M ++ +E++ Sbjct: 137 EDKNSKEMFEKQKKYVEEV 155 >gi|15828849|ref|NP_326209.1| hypothetical protein MYPU_3780 [Mycoplasma pulmonis UAB CTIP] gi|46577539|sp|Q98QI3|RRMF_MYCPU RecName: Full=Probable rRNA maturation factor gi|14089792|emb|CAC13551.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 149 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + R + + F K + + K F K + + L+ TD+ + N YR +DK T+VLSF Sbjct: 11 NFRFMYKKEFLKIMDIIQEKFNFKKR--ISVDLLITDNKEVRENNLLYRNVDKETDVLSF 68 Query: 87 PTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 P F D L LG I++++E I +A + +L H LHLLGYDH Sbjct: 69 P--FGDPDFFDHLDFIPLGSIIISHEKIVAQALEFNHSKKREFCYLFTHSLLHLLGYDHK 126 Query: 144 DDKDACVMEGLERSILEDLGI 164 ++ + +M + I+E L I Sbjct: 127 EEDEEKIMNQYTKEIVEKLNI 147 >gi|255525314|ref|ZP_05392254.1| protein of unknown function UPF0054 [Clostridium carboxidivorans P7] gi|255510986|gb|EET87286.1| protein of unknown function UPF0054 [Clostridium carboxidivorans P7] Length = 120 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 17/112 (15%) Query: 66 RIETLNFEYRGIDKPTNVLSFPT----------------AFASSD-GCSSLMLGDIVLAY 108 +I+ +N E R IDK T+VLSFP F+ D SL+LGDIVL+ Sbjct: 3 KIKEINKENRNIDKVTDVLSFPMLDYEKGKVFKDTYKDFNFSHVDLDEGSLVLGDIVLSL 62 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E + ++ F +V+L IH LHLLGYDH+++ + +M E ILE Sbjct: 63 EKAKEQSLEFNHSFIREVVYLTIHSVLHLLGYDHMEEDEKSIMRKREEQILE 114 >gi|116515199|ref|YP_802828.1| YbeY [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285405|sp|Q057G4|RRMF_BUCCC RecName: Full=Probable rRNA maturation factor gi|116257053|gb|ABJ90735.1| predicted metal-dependent hydrolase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 156 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 3/147 (2%) Query: 25 EIHLRTLCE--VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 +I ++ +C+ + F K + K +E+++ D ++ LN +Y+ + TN Sbjct: 9 KIDIQNVCKKNIFFPKKKYFFLWLKNIFKNKKIEITIRIVDMLEMKFLNKKYKKKNSLTN 68 Query: 83 VLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 VLSF + + L +GDI+L I EAN+L K+ H+ IH LHLL Y Sbjct: 69 VLSFQSPDSIKIKHRFLNYIGDIILCAPYINKEANILKKKKIELWAHMTIHSTLHLLHYS 128 Query: 142 HVDDKDACVMEGLERSILEDLGINDPY 168 H D K M+ E I++ LG N+PY Sbjct: 129 HKDSKSKKNMQKTEIYIMKKLGYNNPY 155 >gi|315226507|ref|ZP_07868295.1| metalloprotease [Parascardovia denticolens DSM 10105] gi|315120639|gb|EFT83771.1| metalloprotease [Parascardovia denticolens DSM 10105] Length = 175 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D + L+ + ++ PT+V+SFP + MLGDI+L E+ Sbjct: 39 DLSIAFIDPAPMAELHLRWMNLEGPTDVMSFPMDELRPGTETDRDEGMLGDIILCPEVAA 98 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH +D M G++R +L Sbjct: 99 DQAAAAGHSTIEEMMLLTIHGVLHLLGYDHATPEDEKRMFGIQRQLL 145 >gi|85859387|ref|YP_461589.1| metal-dependent hydrolase [Syntrophus aciditrophicus SB] gi|123516585|sp|Q2LTL4|RRMF_SYNAS RecName: Full=Probable rRNA maturation factor gi|85722478|gb|ABC77421.1| predicted metal-dependent hydrolase [Syntrophus aciditrophicus SB] Length = 160 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 11/151 (7%) Query: 5 KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 K R+ + IA+ N +I LR + + V L+ V E+SL+F D Sbjct: 2 KRAFERMSMAIAIRNQQKKVKIDLRQI-----RRRVQKLLR---LVDCREKEISLLFVDD 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 I+ +N Y G + PTNV+SF + + +LGDIV++ + +A + Sbjct: 54 EEIQEINQRYLGRNYPTNVISFSLSEGEFSSVNPDVLGDIVISVDTASRDAERGNIPVSD 113 Query: 125 HLVHLIIHGFLHLLGYDHVD---DKDACVME 152 L LIIHG LH+LGY+H + ++ AC+ + Sbjct: 114 ELDFLIIHGLLHILGYNHENNNPEETACMQK 144 >gi|163848855|ref|YP_001636899.1| hypothetical protein Caur_3323 [Chloroflexus aurantiacus J-10-fl] gi|222526810|ref|YP_002571281.1| hypothetical protein Chy400_3584 [Chloroflexus sp. Y-400-fl] gi|189039853|sp|A9WJ51|RRMF_CHLAA RecName: Full=Probable rRNA maturation factor gi|254765075|sp|B9LD66|RRMF_CHLSY RecName: Full=Probable rRNA maturation factor gi|163670144|gb|ABY36510.1| protein of unknown function UPF0054 [Chloroflexus aurantiacus J-10-fl] gi|222450689|gb|ACM54955.1| protein of unknown function UPF0054 [Chloroflexus sp. Y-400-fl] Length = 154 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 15/119 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---------LGDIVL 106 E+ + T + LN ++RG+D PT+VLSF + DG S LGDI + Sbjct: 38 EVGIRITTDDELHRLNRDFRGVDAPTDVLSF-----ADDGHDSRFVVAPDQPRYLGDIAI 92 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGI 164 +Y+ + +A G L +L +HG LHLLGYDH +A M E I+ LG+ Sbjct: 93 SYQRVLAQAAEYGHSPARELAYLTVHGVLHLLGYDHEQGPAEAARMRTREEEIMTILGL 151 >gi|294786871|ref|ZP_06752125.1| putative metalloprotease [Parascardovia denticolens F0305] gi|294485704|gb|EFG33338.1| putative metalloprotease [Parascardovia denticolens F0305] Length = 172 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D + L+ + ++ PT+V+SFP + MLGDI+L E+ Sbjct: 36 DLSIAFIDPAPMAELHLRWMNLEGPTDVMSFPMDELRPGTETDRDEGMLGDIILCPEVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH +D M G++R +L Sbjct: 96 DQAAAAGHSTIEEMMLLTIHGVLHLLGYDHATPEDEKRMFGIQRQLL 142 >gi|116074016|ref|ZP_01471278.1| hypothetical protein RS9916_36237 [Synechococcus sp. RS9916] gi|116069321|gb|EAU75073.1| hypothetical protein RS9916_36237 [Synechococcus sp. RS9916] Length = 193 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 6/118 (5%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVL 106 K ++ L L TD I LN +R +PT+VLSF S D C L LGDI++ Sbjct: 59 KASMFSLGLQLTDDATIAELNGNWRQKPEPTDVLSFAALEKAPPFSGDPC--LELGDIIV 116 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A G L L+ HGFLHLLG+DH D+ M + +L + G+ Sbjct: 117 SVPTARRQATEHGHALLWELRWLVSHGFLHLLGWDHPDEAQLAAMLRRQEQLLNNGGM 174 >gi|312880027|ref|ZP_07739827.1| protein of unknown function UPF0054 [Aminomonas paucivorans DSM 12260] gi|310783318|gb|EFQ23716.1| protein of unknown function UPF0054 [Aminomonas paucivorans DSM 12260] Length = 171 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 13/150 (8%) Query: 23 GDEIHLRTLCEVVFAKAV--SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 G+ + R C V+A+ + + G +E E+S+ F D + + LN YR ++ P Sbjct: 21 GEALQDRIRC--VWARLLLAEGTLPSGEETRE--AEVSVSFVDPNSMAELNRTYRQVEGP 76 Query: 81 TNVLSFPTAFASSDGCSS----LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 T+VLSFP C L LGD+V+ + ++ + G E ++ ++ HGFLH Sbjct: 77 TDVLSFPLWEEEGRFCPPPWEVLPLGDVVICPDQVQPQEG--GGSKERQMLLVLHHGFLH 134 Query: 137 LLGYDH-VDDKDACVMEGLERSILEDLGIN 165 LLG+DH K+ + E ER + + L N Sbjct: 135 LLGWDHDTPQKEQDMWELQERMVSDTLEGN 164 >gi|168023436|ref|XP_001764244.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684684|gb|EDQ71085.1| predicted protein [Physcomitrella patens subsp. patens] Length = 268 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY 108 F + + VELS++ RI LN E+R D PT+VLSF + G +LGD+V++ Sbjct: 153 FDQSDTVELSVLLCSDSRIRELNKEWRRKDSPTDVLSF--SQDQPAGSPLTLLGDLVISV 210 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 E +A G + L L +HG LH+L YDH Sbjct: 211 ETAARQAEERGHTLIDELRILFVHGLLHVLDYDH 244 >gi|304316656|ref|YP_003851801.1| hypothetical protein Tthe_1198 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778158|gb|ADL68717.1| protein of unknown function UPF0054 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 162 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 13/117 (11%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFP-------------TAFASSDGCSSLMLGDIVLA 107 F D+ I LN YR +D+ T+VLSFP + D +GDIV++ Sbjct: 44 FVDNEEIHKLNKYYRNVDRETDVLSFPLVEFEEIYSDIDEENYDEDDAAGPEPIGDIVIS 103 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E + +A G F + +L H HL+GYDH D + +M E ++ L I Sbjct: 104 LEKAKQQAEEYGHSFIREVAYLTAHSMFHLMGYDHETDDERKIMREKEDEVMRRLKI 160 >gi|296393920|ref|YP_003658804.1| hypothetical protein Srot_1510 [Segniliparus rotundus DSM 44985] gi|296181067|gb|ADG97973.1| protein of unknown function UPF0054 [Segniliparus rotundus DSM 44985] Length = 180 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 6/112 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAY 108 ELS++ D+ + L+ ++ + PT+VLSFP A DG + +LGDIVL Sbjct: 35 AELSMLLVDTTTMAHLHQQWMNLPGPTDVLSFPMDDAEPDGRPDAVEAAQTLLGDIVLCP 94 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ +A G E+ ++ L +HG LH+LGYDH + ++ M L+ +++ Sbjct: 95 EVAAEQAEAAGHSAEHEMIVLTVHGVLHILGYDHAEPEEEAEMFALQGKLVD 146 >gi|293376336|ref|ZP_06622573.1| metalloprotein, YbeY family [Turicibacter sanguinis PC909] gi|325843425|ref|ZP_08167983.1| translation metalloprotein YbeY [Turicibacter sp. HGF1] gi|292645025|gb|EFF63098.1| metalloprotein, YbeY family [Turicibacter sanguinis PC909] gi|325489347|gb|EGC91721.1| translation metalloprotein YbeY [Turicibacter sp. HGF1] Length = 157 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 6/117 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSDGCSSLMLGDIVLAY 108 +E S +F D+ +I +N YR D T+V++F P MLGD+ ++ Sbjct: 40 IECSFIFVDNEQIREINANYRQKDAVTDVITFAIEDETPGEIKIQGVPMPRMLGDVFISL 99 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G F+ L L +HG LHLLGYDH+ ++ +M + +L LGI Sbjct: 100 PRTREQAERFGHSFDRELSFLAVHGCLHLLGYDHLVKEEEEIMFAKQEDVLNALGIR 156 >gi|154686792|ref|YP_001421953.1| putative metalloprotease [Bacillus amyloliquefaciens FZB42] gi|189039682|sp|A7Z6U6|RRMF_BACA2 RecName: Full=Probable rRNA maturation factor gi|154352643|gb|ABS74722.1| YqfG [Bacillus amyloliquefaciens FZB42] Length = 157 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIV 105 ++ E+S+ + I +N +YRG D PT+V+SF D + +LGDI+ Sbjct: 36 QDQAEVSVTIVTNEEIREINRDYRGKDTPTDVISFALEEEGEDEVEIVGADMPPVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + + +A G F L L +HGFLHLLGYDH+ ++ M ++ +L++ G+ Sbjct: 96 ISADRTKEQAEEYGHSFMRELGFLAVHGFLHLLGYDHMTKEEEEEMFSKQKDLLDEYGLT 155 >gi|308513315|ref|NP_953333.3| hypothetical protein GSU2284 [Geobacter sulfurreducens PCA] gi|39984273|gb|AAR35660.1| conserved hypothetical protein TIGR00043 [Geobacter sulfurreducens PCA] Length = 114 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+V T I +N +Y G D+PTNV+SF + +LGD++++ + EA Sbjct: 1 MSVVITGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREAE 60 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSIL 159 G F + L L++HG LH+ GYDH + +A ME ER I Sbjct: 61 EAGIAFWSRLCFLLLHGTLHITGYDHERSGEAEARRMEAKEREIF 105 >gi|282899045|ref|ZP_06307026.1| protein of unknown function UPF0054 [Cylindrospermopsis raciborskii CS-505] gi|281195961|gb|EFA70877.1| protein of unknown function UPF0054 [Cylindrospermopsis raciborskii CS-505] Length = 174 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSD---GCSSLMLGDIVLAYE 109 E+ L T+ +I+ LN +YR D+PT+VL+F F ++ L LGDIV++ + Sbjct: 56 EIGLQLTNDAQIQELNAQYRQKDQPTDVLAFAALENNFPYTEEMLASQPLYLGDIVISID 115 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A L L HG LHLLG+DH D++ M + +L+ +GI Sbjct: 116 TAICQAQEREHNLTTELAWLSAHGLLHLLGWDHPDEQSLIEMLNKQSMLLKSVGI 170 >gi|311069133|ref|YP_003974056.1| putative metalloprotease [Bacillus atrophaeus 1942] gi|310869650|gb|ADP33125.1| putative metalloprotease [Bacillus atrophaeus 1942] Length = 157 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIV 105 ++ E+S+ + I+ +N EYRG D PT+V+SF D + +LGDI+ Sbjct: 36 QDQAEVSVTIVTNDEIQQINKEYRGKDTPTDVISFALEEEGEDEVEIVGAEMPPVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A G F L L +HGFLHLLGYDH+ + M ++ +L++ G+ Sbjct: 96 ISADRTREQAEEYGHSFLRELGFLAVHGFLHLLGYDHMTKEQEEEMFTKQKDLLDNYGLT 155 >gi|124515714|gb|EAY57223.1| conserved protein of unknown function [Leptospirillum rubarum] Length = 169 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 2/107 (1%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +++ F ++ RI +N EYRG ++ T+VLSF + + G+I+++ E E +A Sbjct: 37 VTITFVNNRRIRIVNREYRGKNRSTDVLSF-SYPSPPFPDIPFPDGEILISTEKAERQAR 95 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL 162 E +V+LIIHG HL G+DH +DA M+ ER I + L Sbjct: 96 EQNIPLETEIVNLIIHGLCHLAGHDHETGPEDALRMKHAERKIAKTL 142 >gi|330836438|ref|YP_004411079.1| metalloprotease ybeY [Spirochaeta coccoides DSM 17374] gi|329748341|gb|AEC01697.1| metalloprotease ybeY [Spirochaeta coccoides DSM 17374] Length = 153 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 7/125 (5%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 G E+ + E V +S ++S EN VE+S F I LN E+R D+ T+ Sbjct: 11 GQEMFKESYPEDVILDRISGILSD--LGLEN-VEMSCSFVSDEEIRRLNAEWRDRDESTD 67 Query: 83 VLSF----PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 +LSF A S+DG MLGD+V++ E ++ + + L L++HG LHLL Sbjct: 68 ILSFVQEDGEAMPSADGNEWRMLGDLVISPESLKRNSEYFTVSLDEELHRLLVHGMLHLL 127 Query: 139 GYDHV 143 G DH Sbjct: 128 GDDHA 132 >gi|116327964|ref|YP_797684.1| metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330845|ref|YP_800563.1| metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281401|sp|Q04TG5|RRMF_LEPBJ RecName: Full=Probable rRNA maturation factor gi|122284244|sp|Q052J4|RRMF_LEPBL RecName: Full=Probable rRNA maturation factor gi|116120708|gb|ABJ78751.1| Metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124534|gb|ABJ75805.1| Metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 143 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 24/125 (19%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 C ++F K + K+ EL L+ + +N RG DK T+VLSFP F Sbjct: 5 CGILFRKEL----------KDFPCELGLLLVGDSDMRKINRLRRGKDKTTDVLSFPLEFD 54 Query: 92 S--------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 S S+ + LG+IV++ + +E +A +G ++ L++HGFLHL Sbjct: 55 SAPLQNVLQKRTGFDSNSLPPIALGEIVISVDTLEKQAVEIGHSVKDEFYRLLVHGFLHL 114 Query: 138 LGYDH 142 LGYDH Sbjct: 115 LGYDH 119 >gi|269218582|ref|ZP_06162436.1| putative metalloprotease [Actinomyces sp. oral taxon 848 str. F0332] gi|269211693|gb|EEZ78033.1| putative metalloprotease [Actinomyces sp. oral taxon 848 str. F0332] Length = 164 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 EL+++F D + L+ E+ +D PT+VLSFP + +LGDIV+ ++ Sbjct: 37 AELNVLFEDEESMARLHVEWMDLDGPTDVLSFPMDELRPAPIGEEPREGVLGDIVVCPQV 96 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L+ HG LHLLGYDH ++ + M L+R +L Sbjct: 97 AARQAYTAGHAVAEEVLLLVTHGILHLLGYDHAEEDERREMFDLQRQLL 145 >gi|210633814|ref|ZP_03297861.1| hypothetical protein COLSTE_01778 [Collinsella stercoris DSM 13279] gi|210159074|gb|EEA90045.1| hypothetical protein COLSTE_01778 [Collinsella stercoris DSM 13279] Length = 169 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 11/159 (6%) Query: 21 LWGDEIHLRTLCEVVFAKAVSN--LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 L ++ L TL E +A++ L S+G + VE+SL + D + LN E+RGID Sbjct: 4 LISNDAELPTLIEEDEVRAIAAHVLASEGVARE---VEISLSYVDEDEMHELNREWRGID 60 Query: 79 KPTNVLSFP--TAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + T+VLSF +AF ++ LGD++LA E+I +A G + +++HG L Sbjct: 61 RTTDVLSFECDSAFDEDIPVDEIVELGDVILAPEVIARQAPGFGNSAADECRLMLVHGLL 120 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI---NDPYEVD 171 HLLGYDH++D +A VME E ++L +L + DP ++ Sbjct: 121 HLLGYDHIEDDEAEVMEAREDALLRELAVMRGEDPSRIE 159 >gi|225021772|ref|ZP_03710964.1| hypothetical protein CORMATOL_01800 [Corynebacterium matruchotii ATCC 33806] gi|305681061|ref|ZP_07403868.1| translation metalloprotein YbeY [Corynebacterium matruchotii ATCC 14266] gi|224945468|gb|EEG26677.1| hypothetical protein CORMATOL_01800 [Corynebacterium matruchotii ATCC 33806] gi|305659266|gb|EFM48766.1| translation metalloprotein YbeY [Corynebacterium matruchotii ATCC 14266] Length = 205 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIVLA 107 E+++ D + L+ + G++ PT+V+SFP S G MLGDI+L Sbjct: 36 AEVTVSVVDVPTMSELHLRWMGLEGPTDVMSFPMDELTPNMGRPDSAGFGPAMLGDIILC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E +A G + + L L HG LHLLGYDH+ + M L+ +L D Sbjct: 96 PEFAHKQATKAGHDLGHELCLLTTHGCLHLLGYDHITPEQEQKMFALQNELLMD 149 >gi|227495126|ref|ZP_03925442.1| metalloprotease [Actinomyces coleocanis DSM 15436] gi|226831578|gb|EEH63961.1| metalloprotease [Actinomyces coleocanis DSM 15436] Length = 169 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEI 110 EL+L+F + +E L+ ++ + PT+V+SFP LGDIV+ + Sbjct: 35 AELALMFIEPEPMEELHIKWMDLPGPTDVMSFPMDELRPGTPGRVTPPGTLGDIVICPTV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L +HG LHLLGYDHV+ ++ VM L+R +L Sbjct: 95 AAAQALKAGHSAAEEMLLLTVHGVLHLLGYDHVEPEEEKVMFELQRKLL 143 >gi|271963824|ref|YP_003338020.1| hypothetical protein Sros_2296 [Streptosporangium roseum DSM 43021] gi|270506999|gb|ACZ85277.1| protein of unknown function UPF0054 [Streptosporangium roseum DSM 43021] Length = 160 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 11/118 (9%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--------AFASSDG---CSSLMLG 102 + ELS++ D + L+ ++ G PT+VLSFP + A +G +LG Sbjct: 34 LAELSILIVDEEAMAVLHEQWMGEPGPTDVLSFPMDELRPGPGSGARQEGDAPTDPALLG 93 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 D+VL ++ +A G E L L HG LHLLGYDH + ++ M GL+ +LE Sbjct: 94 DVVLCPQVAAKQAAEAGHSTEAELELLCTHGILHLLGYDHAEPEEHKEMFGLQGELLE 151 >gi|298493060|ref|YP_003723237.1| hypothetical protein Aazo_4995 ['Nostoc azollae' 0708] gi|298234978|gb|ADI66114.1| protein of unknown function UPF0054 ['Nostoc azollae' 0708] Length = 178 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 8/110 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP---TAFASSD---GCSSLMLGDIVLAYE 109 E+ L T+ +I+ LN +YR +KPT+VL+F T F S+ L LGDI+++ + Sbjct: 58 EIGLRLTNDTQIQELNAQYRQENKPTDVLAFASLETDFPQSEEMLASQPLYLGDIIVSLD 117 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A L L HG LHL+G+DH D++ +ME L++ ++ Sbjct: 118 TGNRQAQQQEHSLTTELAWLTAHGLLHLVGWDHPDEE--SLMEMLKQQVI 165 >gi|308189661|ref|YP_003922592.1| transcriptional regulator [Mycoplasma fermentans JER] gi|319776821|ref|YP_004136472.1| putative metalloprotease [Mycoplasma fermentans M64] gi|307624403|gb|ADN68708.1| putative transcriptional regulator [Mycoplasma fermentans JER] gi|318037896|gb|ADV34095.1| Putative metalloprotease [Mycoplasma fermentans M64] Length = 151 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 3/138 (2%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + L E + + + NL + F V + + T++ I+ LN EYR D PT++LSF Sbjct: 13 KFLFEKEYKQILENLAKE--FGLNQTVSVDVTITNNDEIQKLNKEYRNKDYPTDILSFGL 70 Query: 89 A-FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + + LG++V+++E +E +A G +L HG +HL+GYDH + + Sbjct: 71 EDWELFENMPIYPLGELVISHEKVEAQAQEFGHSIRREYCYLFAHGLIHLMGYDHETEVE 130 Query: 148 ACVMEGLERSILEDLGIN 165 M L I E L I+ Sbjct: 131 RAEMNKLVDLIFEPLKIS 148 >gi|308174320|ref|YP_003921025.1| metal-dependent hydrolase [Bacillus amyloliquefaciens DSM 7] gi|307607184|emb|CBI43555.1| putative metal-dependent hydrolase [Bacillus amyloliquefaciens DSM 7] gi|328554267|gb|AEB24759.1| metal-binding heat shock protein [Bacillus amyloliquefaciens TA208] gi|328912664|gb|AEB64260.1| putative metal-dependent hydrolase [Bacillus amyloliquefaciens LL3] Length = 157 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIV 105 ++ E+S+ + I +N +YRG D PT+V+SF D + +LGDI+ Sbjct: 36 QDQAEVSVTIVTNDEIREINRDYRGKDTPTDVISFALEEEGEDEVEIVGADMPPVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + + +A G F L L +HGFLHLLGYDH+ ++ M ++ +L++ G+ Sbjct: 96 ISADRTKEQAEEYGHSFMRELGFLAVHGFLHLLGYDHMTKEEEEEMFSKQKDLLDEYGLT 155 >gi|302551323|ref|ZP_07303665.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302468941|gb|EFL32034.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 165 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 15/118 (12%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP D +LGDIVL Sbjct: 34 LSELSVIVVDADAMEQLHIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKEFENH------LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ A G+E E L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EV----AQKQGQEAETQHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|225389159|ref|ZP_03758883.1| hypothetical protein CLOSTASPAR_02905 [Clostridium asparagiforme DSM 15981] gi|225044776|gb|EEG55022.1| hypothetical protein CLOSTASPAR_02905 [Clostridium asparagiforme DSM 15981] Length = 140 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 16/103 (15%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSD--------------GCSS 98 E++++ TD+ I+ +N E+R ID PT+VLSFP A SD Sbjct: 38 AEVNVILTDNQAIQEINREHRQIDAPTDVLSFPMVDYEAPSDFDHVEDAVEDYFNPETGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 LMLGDIV++ + +E +A G L L+ H LHL GYD Sbjct: 98 LMLGDIVISVDKVEEQAEKYGHSQTRELAFLVAHSMLHLCGYD 140 >gi|57168710|ref|ZP_00367842.1| conserved hypothetical protein TIGR00043 [Campylobacter coli RM2228] gi|305432662|ref|ZP_07401823.1| probable metalloprotease [Campylobacter coli JV20] gi|57019991|gb|EAL56671.1| conserved hypothetical protein TIGR00043 [Campylobacter coli RM2228] gi|304444373|gb|EFM37025.1| probable metalloprotease [Campylobacter coli JV20] Length = 135 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 6/105 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ LVF +S ++ +N E R DK T+VLSFP + SL LG +V+ ++ + +A Sbjct: 22 DVELVFVESKEMQEINLEQRKQDKTTDVLSFPL----ENIDESLPLGSVVINVDLAKQKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LG FE + L IH LHLLG+DH + D M E+ ++E Sbjct: 78 KELGHSFEEEVSLLFIHAMLHLLGFDH--EVDNGEMREKEKELIE 120 >gi|320532466|ref|ZP_08033292.1| conserved hypothetical protein TIGR00043 [Actinomyces sp. oral taxon 171 str. F0337] gi|329946932|ref|ZP_08294344.1| translation metalloprotein YbeY [Actinomyces sp. oral taxon 170 str. F0386] gi|320135319|gb|EFW27441.1| conserved hypothetical protein TIGR00043 [Actinomyces sp. oral taxon 171 str. F0337] gi|328526743|gb|EGF53756.1| translation metalloprotein YbeY [Actinomyces sp. oral taxon 170 str. F0386] Length = 152 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSL-MLGDIVLAYEI 110 EL+++F D +E L+ + + PT+V+SFP S+D + LGDIVL ++ Sbjct: 35 AELNIMFIDPEPMEELHVRWLDLPGPTDVMSFPMDELRPGSADSPTPAGTLGDIVLCPQV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L +HG LHLLGYDH + ++ M L+R +L Sbjct: 95 AAKQALAAGHSAVEEMLLLTVHGILHLLGYDHAEPEEKKEMFDLQRRLL 143 >gi|134093656|ref|YP_001098731.1| hypothetical protein HEAR0379 [Herminiimonas arsenicoxydans] gi|166232645|sp|A4G265|RRMF_HERAR RecName: Full=Probable rRNA maturation factor gi|133737559|emb|CAL60602.1| putative metal-dependent hydrolase [Herminiimonas arsenicoxydans] Length = 156 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--TAFASSDGCSSLMLGDIVLAYEIIE 112 +++L F D+ + LN YRG D TNVL+F S ++ DI+L ++++ Sbjct: 38 AQITLRFVDAAEGQILNRNYRGKDYATNVLTFTYNDDDGSDIADDAVTQADIILCTDVLQ 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K H HL+IHG LH GYDH D++A ME LE L LG +PY Sbjct: 98 REAAEQNKTLIFHAAHLVIHGVLHAQGYDHESDEEAEEMEALEIEFLAALGFPNPY 153 >gi|290960550|ref|YP_003491732.1| hypothetical protein SCAB_61701 [Streptomyces scabiei 87.22] gi|260650076|emb|CBG73192.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 165 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP D +LGDIVL Sbjct: 34 LSELSVIVVDADAMEQLHIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ E + + + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVAEKQGKDADTQHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|325068590|ref|ZP_08127263.1| hypothetical protein AoriK_12246 [Actinomyces oris K20] gi|326773546|ref|ZP_08232829.1| metalloprotease [Actinomyces viscosus C505] gi|326636776|gb|EGE37679.1| metalloprotease [Actinomyces viscosus C505] Length = 152 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSL-MLGDIVLAYEI 110 EL+++F D +E L+ + + PT+V+SFP S+D + LGDIVL ++ Sbjct: 35 AELNIMFIDPEPMEELHVRWLDLPGPTDVMSFPMDELRPGSADSPTPAGTLGDIVLCPQV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L +HG LHLLGYDH + ++ M L+R +L Sbjct: 95 AAKQALAAGHSAVEEMLLLTVHGILHLLGYDHAEPEEKKEMFDLQRRLL 143 >gi|317152962|ref|YP_004121010.1| hypothetical protein Daes_1250 [Desulfovibrio aespoeensis Aspo-2] gi|316943213|gb|ADU62264.1| protein of unknown function UPF0054 [Desulfovibrio aespoeensis Aspo-2] Length = 162 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 16/107 (14%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---------------DGCSSLML 101 L L D I LN E+ G PTN+LSFP AF S G + L Sbjct: 42 LELTLVDDREIARLNREFMGCPGPTNILSFP-AFERSGPDSGPDVDPDSGPDSGTMAEYL 100 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 G++ L+ + + EA++ G+ HL L+ HG LHL G+DH ++ DA Sbjct: 101 GELALSVDTLAREAHLYGQPPRVHLARLLAHGILHLAGHDHGEEMDA 147 >gi|302518989|ref|ZP_07271331.1| metal-dependent hydrolase [Streptomyces sp. SPB78] gi|318062407|ref|ZP_07981128.1| metal-binding heat shock protein [Streptomyces sp. SA3_actG] gi|318079398|ref|ZP_07986730.1| metal-binding heat shock protein [Streptomyces sp. SA3_actF] gi|333027184|ref|ZP_08455248.1| putative metalloprotease [Streptomyces sp. Tu6071] gi|302427884|gb|EFK99699.1| metal-dependent hydrolase [Streptomyces sp. SPB78] gi|332747036|gb|EGJ77477.1| putative metalloprotease [Streptomyces sp. Tu6071] Length = 165 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVILVDGPAMEQLHVQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKEF--ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ E + E + L L +HG LHLLGYDH + + M GL+++I++ Sbjct: 94 EVAERQGREAPTEHSTDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQQAIVD 147 >gi|261414960|ref|YP_003248643.1| protein of unknown function UPF0054 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371416|gb|ACX74161.1| protein of unknown function UPF0054 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 161 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 6/113 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +++V + +N YRG+DK T+VLSF + MLG+I +A + ++ +A Sbjct: 47 VNIVLCTDEFVREMNKNYRGLDKVTDVLSF--EWHEEIPGEEEMLGEIYIARDQVKRQAP 104 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 G F + +I+HG LHL GYDH+ D VM E E LG+ DPY+ Sbjct: 105 QYGNSFFAEMKRVIVHGLLHLSGYDHIKAADRKVMRARE---CEFLGL-DPYK 153 >gi|153816465|ref|ZP_01969133.1| hypothetical protein RUMTOR_02718 [Ruminococcus torques ATCC 27756] gi|145846207|gb|EDK23125.1| hypothetical protein RUMTOR_02718 [Ruminococcus torques ATCC 27756] Length = 160 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 15/126 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---------------CSSL 99 E+SL+ T I+ +N R ID+ T+VLSFP A + G L Sbjct: 34 TEVSLLLTTDEEIKEINRMQRQIDRATDVLSFPMADYETPGDFSHLDEDAGLFHPDTGEL 93 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 MLGDIV++ + + +A G LI H LHL GYDH+++ + ME ++ I+ Sbjct: 94 MLGDIVISVDKVFEQAEEYGHSLLREYAFLIAHSMLHLFGYDHMEEVERKEMEMHQKKIM 153 Query: 160 EDLGIN 165 E + I Sbjct: 154 ELVNIT 159 >gi|317500212|ref|ZP_07958443.1| hypothetical protein HMPREF1026_00385 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087560|ref|ZP_08336491.1| metalloprotease [Lachnospiraceae bacterium 3_1_46FAA] gi|316898383|gb|EFV20423.1| hypothetical protein HMPREF1026_00385 [Lachnospiraceae bacterium 8_1_57FAA] gi|330400700|gb|EGG80304.1| metalloprotease [Lachnospiraceae bacterium 3_1_46FAA] Length = 164 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 15/126 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---------------CSSL 99 E+SL+ T I+ +N R ID+ T+VLSFP A + G L Sbjct: 38 TEVSLLLTTDEEIKEINRMQRQIDRATDVLSFPMADYETPGDFSHLDEDAGLFHPDTGEL 97 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 MLGDIV++ + + +A G LI H LHL GYDH+++ + ME ++ I+ Sbjct: 98 MLGDIVISVDKVFEQAEEYGHSLLREYAFLIAHSMLHLFGYDHMEEVERKEMEMHQKKIM 157 Query: 160 EDLGIN 165 E + I Sbjct: 158 ELVNIT 163 >gi|307718663|ref|YP_003874195.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] gi|306532388|gb|ADN01922.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] Length = 148 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 5/88 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++++V + I+ LN +RG D+PT+VLSFP +S+G S + GDIV+A E++ +A Sbjct: 37 DIAVVMCSAEFIQELNRTFRGKDEPTDVLSFP----NSEGGSRIQ-GDIVIAPEVVVHQA 91 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHV 143 G L+ +I+HG LHL G DH+ Sbjct: 92 ADWGVPAHEELLRVILHGLLHLSGMDHM 119 >gi|240172994|ref|ZP_04751652.1| putative metalloprotease [Mycobacterium kansasii ATCC 12478] Length = 178 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 11/132 (8%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + L+S FV + + ELS+V D+ + L+ + + PT+V+SFP G Sbjct: 16 TELVSVARFVIDKMDVNPGAELSMVLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGG 75 Query: 96 ------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 MLGDIVL E +A G + L L IHG LHLLGYDH + + Sbjct: 76 RPDAPEPGPAMLGDIVLCPEFAAEQAAAAGHSLGHELALLTIHGVLHLLGYDHGEPDEER 135 Query: 150 VMEGLERSILED 161 M L+ +LE+ Sbjct: 136 EMFALQERLLEE 147 >gi|167749631|ref|ZP_02421758.1| hypothetical protein EUBSIR_00589 [Eubacterium siraeum DSM 15702] gi|167657384|gb|EDS01514.1| hypothetical protein EUBSIR_00589 [Eubacterium siraeum DSM 15702] Length = 169 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 7/137 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--- 89 V K ++ + FV + V ++LV D+ RI+ +N E+R +K T+V+SFP Sbjct: 32 RTVIRKCIAETLRVTDFVGDADVSVTLV--DNERIKRINKEFRDKNKVTDVISFPLGAYD 89 Query: 90 -FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + + + MLGDIV++ E +A G + L H LHLLGYDH DD D Sbjct: 90 EYDVNPENGAYMLGDIVISMEKAHAQAIEYGHSLVREVGFLATHSTLHLLGYDHEDDPDG 149 Query: 149 -CVMEGLERSILEDLGI 164 VM L+ +L +L I Sbjct: 150 EKVMLELQDLVLNNLKI 166 >gi|227548791|ref|ZP_03978840.1| metalloprotease [Corynebacterium lipophiloflavum DSM 44291] gi|227079121|gb|EEI17084.1| metalloprotease [Corynebacterium lipophiloflavum DSM 44291] Length = 187 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLA 107 E+++ D + L+ + ++ PT+V+SFP + G MLGDI+L Sbjct: 36 TEVTVTLVDEPTMADLHVRWMDLEGPTDVMSFPMDELTPGGGRPDAAQPGPAMLGDIILC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +A + G + + L L +HG LHLLGYDHV +D M L+ IL D Sbjct: 96 PAFDRRQAEIAGHDLGHELALLTVHGVLHLLGYDHVAPEDEREMFSLQNEILAD 149 >gi|158334602|ref|YP_001515774.1| hypothetical protein AM1_1432 [Acaryochloris marina MBIC11017] gi|189038694|sp|B0C7R9|RRMF_ACAM1 RecName: Full=Probable rRNA maturation factor gi|158304843|gb|ABW26460.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 176 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 5/92 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLM--LGDIVLAYEI 110 ELSL+ TD I+ LN YR +D+PT+VL+F T +D S + LGDI+++ E Sbjct: 58 ELSLLLTDDAAIQNLNATYRHLDRPTDVLAFATLDLTEQPTDLWSEMPVELGDIIISVET 117 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +A L L HG LHLLG+DH Sbjct: 118 AAQQAQEQQHPLPQELAWLATHGLLHLLGWDH 149 >gi|222099958|ref|YP_002534526.1| Putative metalloprotease [Thermotoga neapolitana DSM 4359] gi|254807298|sp|B9K877|RRMF_THENN RecName: Full=Probable rRNA maturation factor gi|221572348|gb|ACM23160.1| Putative metalloprotease [Thermotoga neapolitana DSM 4359] Length = 149 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 9/98 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 V +++ +I+ +N E+RG D PT+VL+FP + G+I + E++E Sbjct: 32 VNTNVILVSKDQIKEMNREFRGEDFPTDVLTFP--------LFEEVYGEIYICPEVVEEN 83 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVM 151 A FE L+ ++IHG LHL GYDH +DK+A M Sbjct: 84 AKEYNNTFEKELIEVVIHGILHLAGYDHEFEDKNAKEM 121 >gi|262203048|ref|YP_003274256.1| hypothetical protein Gbro_3158 [Gordonia bronchialis DSM 43247] gi|262086395|gb|ACY22363.1| protein of unknown function UPF0054 [Gordonia bronchialis DSM 43247] Length = 188 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 6/110 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAYEI 110 LS++ D + ++ ++ + PT+V+SFP + +LGDIVL E Sbjct: 37 LSVLCVDEDTMADMHVQWMDLPGPTDVMSFPMDELVPGGRPDAADLGPAILGDIVLCPEF 96 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +A + F++ L L IHG LHLLG+DH D + M GL+ IL+ Sbjct: 97 AAQQAKTAKRSFDHELSMLTIHGVLHLLGFDHADPDEEREMFGLQNEILD 146 >gi|257458354|ref|ZP_05623502.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] gi|257444289|gb|EEV19384.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] Length = 153 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 2/106 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEI 113 +LS+VF I LN YR ID PT+VLSF + DG GDIV++ + + Sbjct: 37 DLSVVFCKDAFIHELNKTYRHIDSPTDVLSFEQGDEYDDEDGNLRFNAGDIVISLDSLRS 96 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A L L+IHG LHL G DH D+ M L+ IL Sbjct: 97 NAETFNVTMNEELKRLLIHGILHLSGMDHSDNDPQQEMLQLQEKIL 142 >gi|328948521|ref|YP_004365858.1| metalloprotease ybeY [Treponema succinifaciens DSM 2489] gi|328448845|gb|AEB14561.1| metalloprotease ybeY [Treponema succinifaciens DSM 2489] Length = 164 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEI 113 E S++F I+ LN YR ID PT+VLSF + D L GDI ++ + + Sbjct: 39 EFSILFCSDEYIQYLNKTYRNIDNPTDVLSFENGEKYTDEDNVVWLQAGDIAISVDTLPK 98 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDD------KDACVMEGLERSILEDL 162 + L LIIHG LHL GYDH ++ + C M ++ +++D Sbjct: 99 NSEYFAVSQNEELKRLIIHGILHLNGYDHGEEHVEKNVEPKCEMLVFQKKLMKDF 153 >gi|225873317|ref|YP_002754776.1| conserved hypothetical protein TIGR00043 [Acidobacterium capsulatum ATCC 51196] gi|225791778|gb|ACO31868.1| conserved hypothetical protein TIGR00043 [Acidobacterium capsulatum ATCC 51196] Length = 202 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 10/125 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGC-SSLMLGDIVLAYEIIEI 113 ++S++ T +I N E+RG +KPT+VLSFP A DG + + GD+ ++ E + Sbjct: 37 DVSVLLTGDKQIRRWNREFRGKNKPTDVLSFPAAPLDGPDGPIPAPIAGDLAISVETADR 96 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVME-------GLERSILEDLGIN 165 +A L L++HG LHL GYDH D+ + +E GL+ +++E Sbjct: 97 QAAEHRHTLIEELKVLLLHGTLHLAGYDHETDNGEMARLEQRLRIKLGLKSALIERTQAA 156 Query: 166 DPYEV 170 DP + Sbjct: 157 DPKRL 161 >gi|317177908|dbj|BAJ55697.1| putative metalloprotease [Helicobacter pylori F16] Length = 140 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N ++RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDETMR--EINRDFRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG EN + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHSLENEIALLFIHGVLHLLGYDHEKDK 114 >gi|300741538|ref|ZP_07071559.1| putative metalloprotease [Rothia dentocariosa M567] gi|300380723|gb|EFJ77285.1| putative metalloprotease [Rothia dentocariosa M567] Length = 173 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 L L + +FAK ISK + LS+ ++E ++ E+ + T+V+SFP Sbjct: 35 LSNLVDYIFAKL---FISKDTY-------LSIAVVGEKQMEKIHLEWMDLPGATDVMSFP 84 Query: 88 T---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + D + MLGDIVL + + G + L L HG LH LGYDH Sbjct: 85 MDELVPGTEDELAQGMLGDIVLCPSVAARQGADAGHSTLDELCLLTTHGILHCLGYDHGT 144 Query: 145 DKDACVMEGLERSILED-LGINDPYEV 170 ++ M GL+RS+LE LG P E Sbjct: 145 AQEEAEMFGLQRSLLEGFLGRAAPVET 171 >gi|297199578|ref|ZP_06916975.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197713494|gb|EDY57528.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 165 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 15/118 (12%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP D +LGDIVL Sbjct: 34 LSELSVIVVDTDAMEQLHIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKEFENH------LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ A G+E E L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EV----AKRQGEEAETQHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|311113631|ref|YP_003984853.1| metalloprotease [Rothia dentocariosa ATCC 17931] gi|310945125|gb|ADP41419.1| probable metalloprotease [Rothia dentocariosa ATCC 17931] Length = 173 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 L L + +FAK ISK + LS+ ++E ++ E+ + T+V+SFP Sbjct: 35 LSNLVDYIFAKL---FISKDTY-------LSIAVVGEKQMEKIHLEWMDLPGATDVMSFP 84 Query: 88 T---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + D + MLGDIVL + + G + L L HG LH LGYDH Sbjct: 85 MDELVPGTEDELAQGMLGDIVLCPPVAARQGADAGHSTLDELCLLTTHGILHCLGYDHGT 144 Query: 145 DKDACVMEGLERSILED-LGINDPYEV 170 ++ M GL+RS+LE LG P E Sbjct: 145 AQEEAEMFGLQRSLLEGFLGRAAPVET 171 >gi|227833630|ref|YP_002835337.1| hypothetical protein cauri_1806 [Corynebacterium aurimucosum ATCC 700975] gi|262184633|ref|ZP_06044054.1| putative metalloprotease [Corynebacterium aurimucosum ATCC 700975] gi|254800637|sp|C3PHU5|RRMF_CORA7 RecName: Full=Probable rRNA maturation factor gi|227454646|gb|ACP33399.1| hypothetical protein cauri_1806 [Corynebacterium aurimucosum ATCC 700975] Length = 191 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 9/116 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSL-----MLGDIV 105 E ++ D I L+ + ++ PT+V+SFP T AS+ ++ MLGDIV Sbjct: 36 AECTITAVDLDTIADLHVRWMDLEGPTDVMSFPMDELTPGASAGRPDAVEAGPAMLGDIV 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L E + +A G + L L +HG LHLLGYDH + M GL+ +L D Sbjct: 96 LCPEFAQRQATAAGHSLGHELALLTVHGCLHLLGYDHTTAAEEKEMFGLQNELLAD 151 >gi|291530789|emb|CBK96374.1| conserved hypothetical protein TIGR00043 [Eubacterium siraeum 70/3] gi|291557706|emb|CBL34823.1| conserved hypothetical protein TIGR00043 [Eubacterium siraeum V10Sc8a] Length = 169 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 7/137 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--- 89 V K ++ + FV + V ++LV D+ RI+ +N E+R +K T+V+SFP Sbjct: 32 RTVIRKCIAETLRVTDFVGDADVSVTLV--DNERIKRINKEFRDKNKVTDVISFPLGAYD 89 Query: 90 -FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + + + MLGDIV++ E +A G + L H LHLLGYDH DD D Sbjct: 90 EYDVNPENGAYMLGDIVISMEKAHAQAIEYGHSLIREVGFLATHSTLHLLGYDHEDDPDG 149 Query: 149 -CVMEGLERSILEDLGI 164 VM L+ +L +L I Sbjct: 150 EKVMLELQDLVLNNLKI 166 >gi|291166726|gb|EFE28772.1| metalloprotease [Filifactor alocis ATCC 35896] Length = 162 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 13/142 (9%) Query: 35 VFAKAVSNLISKGYFVKENIV---ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP---- 87 VF K +S++I E++ E+SL + +I LN +R ID+ T+VLSFP Sbjct: 18 VFQKTLSDIIEYA-METEHLTGDYEVSLSVVSADQIRELNANFRQIDRITDVLSFPMYER 76 Query: 88 -----TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + +GDIVL Y+ +A G + + +L+ H HLLGYDH Sbjct: 77 EELDEIEEKKEYEDYEVNIGDIVLCYDRAVEQAKEYGHSLKREICYLVTHSIFHLLGYDH 136 Query: 143 VDDKDACVMEGLERSILEDLGI 164 +++++ +M E +L I Sbjct: 137 MEEEEKQMMRTREEQVLSHFHI 158 >gi|269794667|ref|YP_003314122.1| hypothetical protein Sked_13480 [Sanguibacter keddieii DSM 10542] gi|269096852|gb|ACZ21288.1| conserved hypothetical protein TIGR00043 [Sanguibacter keddieii DSM 10542] Length = 153 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 ELS++F + + L+ ++ PT+VLSFP + + +LGD+V+ E+ Sbjct: 35 TELSILFVGTEVMSELHVQWMDEPGPTDVLSFPMDELRPGREGEVTPAGLLGDVVVCPEV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 I+A G ++ L HG LHLLGYDH + ++ M GL+R +L Sbjct: 95 AAIQAQGAGHSTVEEMLLLTTHGILHLLGYDHAEPEEEKEMFGLQRRLL 143 >gi|223985695|ref|ZP_03635742.1| hypothetical protein HOLDEFILI_03048 [Holdemania filiformis DSM 12042] gi|223962306|gb|EEF66771.1| hypothetical protein HOLDEFILI_03048 [Holdemania filiformis DSM 12042] Length = 162 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 4/116 (3%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVL 106 K+ +S++F S +I +N +YR +D+PT+V+SF + + + LGDI + Sbjct: 43 KQGDYTISVIFVKSRKIHEINRDYRQVDRPTDVISFAACDDQDEFELIEEAEVELGDIFI 102 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E +A G + + L HG LH GYDH+ + +M L+ IL+ L Sbjct: 103 NVEAAISQAEEYGHSLQREICFLFTHGLLHCFGYDHMQPDEEKIMFDLQHEILDPL 158 >gi|134098070|ref|YP_001103731.1| putative metalloprotease [Saccharopolyspora erythraea NRRL 2338] gi|291007471|ref|ZP_06565444.1| putative metalloprotease [Saccharopolyspora erythraea NRRL 2338] gi|166231386|sp|A4F9T1|RRMF_SACEN RecName: Full=Probable rRNA maturation factor gi|133910693|emb|CAM00806.1| protein of unknown function UPF0054 [Saccharopolyspora erythraea NRRL 2338] Length = 183 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 6/116 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLMLGDIVL 106 + ELS+V + + L+ + + PT+V++FP + S G +LGDIVL Sbjct: 33 QLAELSIVLVELDVMSDLHERWMDLPGPTDVMAFPMDEYDSSRRPDSAGAGPALLGDIVL 92 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + +A G + L L +HG LHLLGYDH + ++ M GL+ IL D Sbjct: 93 CPAFAKDQARKAGHSLLDELHLLTVHGVLHLLGYDHAEPEEEREMFGLQNQILADF 148 >gi|256832769|ref|YP_003161496.1| hypothetical protein Jden_1545 [Jonesia denitrificans DSM 20603] gi|256686300|gb|ACV09193.1| protein of unknown function UPF0054 [Jonesia denitrificans DSM 20603] Length = 151 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 4/110 (3%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYE 109 + ELS+VF D I L+ ++ I PT+VLSFP + +LGDIV+ E Sbjct: 34 LTELSVVFVDPDTISELHEQWMDIPGPTDVLSFPMDELRPGTTERPTEQGILGDIVICPE 93 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + +A G ++ L HG LHLLGYDH + ++ M L+R +L Sbjct: 94 VAVDQAAQAGHSPIEEMLLLATHGILHLLGYDHAEPEEEREMFSLQRHLL 143 >gi|206602218|gb|EDZ38700.1| Conserved protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 169 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 2/107 (1%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +++ F ++ RI +N EYRG ++ T+VLSF + + G+I+++ E E +A Sbjct: 37 VTITFVNNRRIRIVNREYRGKNRSTDVLSF-SYPSPPFPDIPFPDGEILISTEKAERQAR 95 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL 162 E +++LIIHG HL G+DH +D+ M+ +ER I L Sbjct: 96 EQNISLETEIINLIIHGLCHLAGHDHETGPEDSLRMKSVERKIANAL 142 >gi|297566635|ref|YP_003685607.1| hypothetical protein Mesil_2231 [Meiothermus silvanus DSM 9946] gi|296851084|gb|ADH64099.1| protein of unknown function UPF0054 [Meiothermus silvanus DSM 9946] Length = 149 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 LR+ + K ++ L G+ V ++V TD I L E+ G D PT+VLSFP Sbjct: 24 LRSRLKRSLGKLMAELGYPGHAV-------TVVLTDDPEIRALKLEHWGEDTPTDVLSFP 76 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 T F D LGDIV++ + + +A G E + L H HLLG+DH + + Sbjct: 77 T-FEPGDPFVPPHLGDIVISLDTAKHQAEEHGHTLETEALILAAHSLWHLLGHDHTTEAE 135 >gi|261337356|ref|ZP_05965240.1| putative metalloprotease [Bifidobacterium gallicum DSM 20093] gi|270277734|gb|EFA23588.1| putative metalloprotease [Bifidobacterium gallicum DSM 20093] Length = 181 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 +L+++F D I L+ + G+ PT+V+SFP S++ S +LGDIV+ + Sbjct: 36 DLAILFVDPDPIAQLHERWMGLLGPTDVMSFPMDELRPGSTNALSEGILGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH M GL+R +L Sbjct: 96 QQAAAAGHSAMEEMLLLTIHGVLHLLGYDHRTKDQERQMFGLQRQLL 142 >gi|320094218|ref|ZP_08026022.1| metalloprotease [Actinomyces sp. oral taxon 178 str. F0338] gi|319978843|gb|EFW10382.1| metalloprotease [Actinomyces sp. oral taxon 178 str. F0338] Length = 149 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 EL+++F + +E L+ ++ + PT+V+SFP + + MLGDI + E+ Sbjct: 34 AELNILFIGAGPMEELHVKWLDLPGPTDVMSFPMDELKPGTADNPTPPGMLGDICICPEV 93 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLGYDH +D + M L+R +L Sbjct: 94 ATRQAADSGHTAAEEMLLLATHGILHLLGYDHAEDAERAEMFALQRKLL 142 >gi|296113058|ref|YP_003626996.1| uncharacterized protein family (UPF0054) family protein [Moraxella catarrhalis RH4] gi|295920752|gb|ADG61103.1| uncharacterized protein family (UPF0054) family protein [Moraxella catarrhalis RH4] gi|326560434|gb|EGE10816.1| hypothetical protein E9G_05772 [Moraxella catarrhalis 7169] gi|326561638|gb|EGE11975.1| hypothetical protein E9K_08504 [Moraxella catarrhalis 103P14B1] gi|326562601|gb|EGE12912.1| hypothetical protein E9M_04866 [Moraxella catarrhalis 46P47B1] gi|326563589|gb|EGE13843.1| hypothetical protein E9O_08074 [Moraxella catarrhalis 12P80B1] gi|326565831|gb|EGE15993.1| hypothetical protein E9Q_09660 [Moraxella catarrhalis BC1] gi|326570486|gb|EGE20526.1| hypothetical protein E9U_03828 [Moraxella catarrhalis BC8] gi|326571169|gb|EGE21193.1| hypothetical protein E9S_05602 [Moraxella catarrhalis BC7] gi|326573460|gb|EGE23428.1| hypothetical protein E9Y_09446 [Moraxella catarrhalis 101P30B1] gi|326575642|gb|EGE25565.1| hypothetical protein E9W_01670 [Moraxella catarrhalis CO72] gi|326577106|gb|EGE27000.1| hypothetical protein EA1_04120 [Moraxella catarrhalis O35E] Length = 180 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 66/102 (64%), Gaps = 3/102 (2%) Query: 70 LNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +N RG D TNVLS+P+ + + + LG++VL +E++ EA+ K FE+HL Sbjct: 76 VNLAARGKDYATNVLSYPSELPTEMTTLLGEIELGELVLCHEVVLNEADEQNKSFESHLT 135 Query: 128 HLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 HLIIHG LHLLG+DH + D DA MEG E IL LGI++PY Sbjct: 136 HLIIHGLLHLLGFDHEISDADADQMEGFEIEILAQLGIDNPY 177 >gi|306829341|ref|ZP_07462531.1| probable metalloprotease [Streptococcus mitis ATCC 6249] gi|304428427|gb|EFM31517.1| probable metalloprotease [Streptococcus mitis ATCC 6249] Length = 165 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYRG D+PT+V+S +F D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRGTDRPTDVISLEYKPELDISFDEEDLLENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|282861808|ref|ZP_06270872.1| protein of unknown function UPF0054 [Streptomyces sp. ACTE] gi|282563624|gb|EFB69162.1| protein of unknown function UPF0054 [Streptomyces sp. ACTE] Length = 165 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVIVVDAAAMEQLHIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCP 93 Query: 109 EII--EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ + E G + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVAKRQGEEAPTGHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|88809863|ref|ZP_01125369.1| hypothetical protein WH7805_10818 [Synechococcus sp. WH 7805] gi|88786247|gb|EAR17408.1| hypothetical protein WH7805_10818 [Synechococcus sp. WH 7805] Length = 200 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEII 111 V L L T I LN +RG+ + T+VLSF A S ++L LGDIV++ Sbjct: 70 VSLGLQLTGDREIAELNGRWRGLPQATDVLSF-AALESEMPLQQATTLELGDIVVSVPTA 128 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 +A G E L L+ HG LHLLG+DH D+ Sbjct: 129 ARQAIEQGHSLERELQWLVSHGLLHLLGWDHPDE 162 >gi|297160576|gb|ADI10288.1| putative metalloprotease [Streptomyces bingchenggensis BCW-1] Length = 165 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVIVVDADAMEQLHIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCP 93 Query: 109 EII--EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ + E G + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVAKKQGEEAPTGHSMDEELQLLTVHGVLHLLGYDHEEPDERAEMFGLQAAIVD 147 >gi|300933262|ref|ZP_07148518.1| putative metalloprotease [Corynebacterium resistens DSM 45100] Length = 194 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 7/114 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGC--SSLMLGDIV 105 + ELS+ D I L+ + + PT+V+SFP + DG S MLGDI+ Sbjct: 34 SAAELSIHIVDLDTIADLHERWLDLPGPTDVMSFPMDELTPGWGRKDGPPPSPAMLGDIM 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L + E +AN G + L L +HG LHLLG+DH ++ M L+ IL Sbjct: 94 LCPDFAERQANRAGHSLAHELDLLTVHGVLHLLGFDHTTPEEEQRMFSLQNEIL 147 >gi|269102015|ref|ZP_06154712.1| predicted metal-dependent hydrolase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161913|gb|EEZ40409.1| predicted metal-dependent hydrolase [Photobacterium damselae subsp. damselae CIP 102761] Length = 78 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 47/72 (65%) Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD+V+ +++E EA K H H+++HG LHLLGYDH++D +A ME LE I+ Sbjct: 5 LLGDLVICRQVVEREAPEQNKTLTAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIM 64 Query: 160 EDLGINDPYEVD 171 E +G DPY + Sbjct: 65 EKMGFPDPYAAE 76 >gi|257784596|ref|YP_003179813.1| hypothetical protein Apar_0793 [Atopobium parvulum DSM 20469] gi|257473103|gb|ACV51222.1| protein of unknown function UPF0054 [Atopobium parvulum DSM 20469] Length = 169 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 9/109 (8%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA------FASSDGCSSLMLGDIVLAYEI 110 +S+ I+ +N E+R + PT+V+S A + C LGDI+LA + Sbjct: 41 VSISIVSDEEIQQVNLEWREKNAPTDVISLEVERPDDPDLAPGEMCE---LGDIILAPQF 97 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 I +A G + +++H LHLLGYDHV D +A VME E +++ Sbjct: 98 IARQAKEYGTTEADEFRLMLVHAMLHLLGYDHVADDEAEVMEAREDALV 146 >gi|239931373|ref|ZP_04688326.1| putative metalloprotease [Streptomyces ghanaensis ATCC 14672] gi|291439743|ref|ZP_06579133.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291342638|gb|EFE69594.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 165 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 15/118 (12%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP D +LGDIVL Sbjct: 34 LSELSVIVVDADAMEQLHIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE------FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ A GKE + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EV----AARQGKEAPTQHTMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|41408257|ref|NP_961093.1| putative metalloprotease [Mycobacterium avium subsp. paratuberculosis K-10] gi|59799130|sp|Q73XZ9|RRMF_MYCPA RecName: Full=Probable rRNA maturation factor gi|41396612|gb|AAS04476.1| hypothetical protein MAP_2159c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 177 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + LIS FV + ELS+V D+ + L+ + + PT+V+SFP G Sbjct: 16 AELISVARFVIAKMDVNPAAELSMVLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGG 75 Query: 96 ------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 MLGDIVL E +A G + L L IHG LHLLGYDH + + Sbjct: 76 RPDAPEPGPAMLGDIVLCPEFAADQAAAAGHSLGHELALLTIHGVLHLLGYDHGEPDEEK 135 Query: 150 VMEGLERSILED 161 M L+ +LE+ Sbjct: 136 EMFALQDRLLEE 147 >gi|118462943|ref|YP_881245.1| metalloprotease [Mycobacterium avium 104] gi|254774751|ref|ZP_05216267.1| putative metalloprotease [Mycobacterium avium subsp. avium ATCC 25291] gi|145572765|sp|A0QEA7|RRMF_MYCA1 RecName: Full=Probable rRNA maturation factor gi|118164230|gb|ABK65127.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 177 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + LIS FV + ELS+V D+ + L+ + + PT+V+SFP G Sbjct: 16 AELISVARFVIAKMDVNPAAELSMVLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGG 75 Query: 96 ------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 MLGDIVL E +A G + L L IHG LHLLGYDH + + Sbjct: 76 RPDAPEPGPAMLGDIVLCPEFAADQAAAAGHSLGHELALLTIHGVLHLLGYDHGEPDEEK 135 Query: 150 VMEGLERSILED 161 M L+ +LE+ Sbjct: 136 EMFALQDRLLEE 147 >gi|328882369|emb|CCA55608.1| metal-dependent hydrolase [Streptomyces venezuelae ATCC 10712] Length = 165 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAYEI 110 ELS++ D+ +E L+ ++ + PT+V+SFP + +LGDIVL E+ Sbjct: 36 ELSVIVVDAEAMEQLHIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEV 95 Query: 111 IEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL----EDLGI 164 + E + L L +HG LHLLGYDH + ++ M GL+ +I+ E+ G+ Sbjct: 96 ATQQGKDAPTEHSMDEELQLLTVHGVLHLLGYDHEEPEEKAEMFGLQAAIVDGWREEKGL 155 Query: 165 NDP 167 P Sbjct: 156 TGP 158 >gi|318040668|ref|ZP_07972624.1| metal-dependent hydrolase [Synechococcus sp. CB0101] Length = 189 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 11/114 (9%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSF-----------PTAFASSDGCSSLMLGDIV 105 L L I LN ++RG PT+VL+F P +G +L LGDIV Sbjct: 70 LGLSLVGDAEIAELNGDWRGKSGPTDVLAFAAQDDGLDDAPPIPMPDDEGEEALELGDIV 129 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ E +A G L L HG LHLLG+DH DD +M + +L Sbjct: 130 ISLETAARQAPEHGHSLVEELQFLATHGLLHLLGWDHPDDASLALMLARQERLL 183 >gi|71894404|ref|YP_278512.1| hypothetical protein MS53_0389 [Mycoplasma synoviae 53] Length = 159 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 3/115 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGCSSLMLGDIVLAYE 109 K+ I+++S+V S+ LNFEYR DK T++LSF F D L LG++V+ Sbjct: 43 KQIILDVSIV--SSYTSRKLNFEYRQKDKTTDILSFGYDDFDLYDKMPFLNLGELVICNN 100 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I+ +A + + ++L HG +HL GYDH +K+ M+ + SI L I Sbjct: 101 KIKKQAIIFNHSIKREFLYLFTHGLVHLYGYDHQSEKEKKEMDFIVDSIFNPLKI 155 >gi|282858165|ref|ZP_06267360.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] gi|282584087|gb|EFB89460.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] Length = 190 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 5/93 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAYE 109 V++SL F D R+ +N EYR PT+VLSFP F L+LGDIV+ Sbjct: 61 VQISLQFLDETRMAEVNSEYRQTHAPTDVLSFPLFEKEGRFVPDAQLPPLLLGDIVVCPA 120 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +I A E+ L ++ HG LHLL +DH Sbjct: 121 VIRKNAVERRVSEESELALVVFHGILHLLAWDH 153 >gi|160880741|ref|YP_001559709.1| hypothetical protein Cphy_2609 [Clostridium phytofermentans ISDg] gi|189039831|sp|A9KMV9|RRMF_CLOPH RecName: Full=Probable rRNA maturation factor gi|160429407|gb|ABX42970.1| protein of unknown function UPF0054 [Clostridium phytofermentans ISDg] Length = 165 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 20/129 (15%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------------------AFASSDGC 96 E+++V T++ I+ +N EYR ID PT+VLSFP F G Sbjct: 38 TEINVVLTNNEEIKEINKEYREIDAPTDVLSFPMVEFNEPSDFEHVEEEQEDCFHPDSG- 96 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LMLGDI+++ + + +A G + L LI H LHL GYDH+++++ VME +R Sbjct: 97 -ELMLGDIIVSVDKVFSQAKEFGHSEKRELGFLIAHSMLHLCGYDHMEEEEREVMEERQR 155 Query: 157 SILEDLGIN 165 +IL+ + ++ Sbjct: 156 AILDRIHLS 164 >gi|315185807|gb|EFU19573.1| protein of unknown function UPF0054 [Spirochaeta thermophila DSM 6578] Length = 148 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 5/88 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++++V I+ LN +RG D+PT+VLSFP S+G S + GDIV+A E++ +A Sbjct: 37 DIAVVMCSPEFIQELNRTFRGKDEPTDVLSFP----DSEGGSRIQ-GDIVIAPEVVVHQA 91 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHV 143 G L+ +I+HG LHL G DH+ Sbjct: 92 ADWGVPAHEELLRVILHGLLHLSGMDHM 119 >gi|148887457|sp|Q4A620|RRMF_MYCS5 RecName: Full=Probable rRNA maturation factor gi|144575092|gb|AAZ43801.2| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 155 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 3/115 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGCSSLMLGDIVLAYE 109 K+ I+++S+V S+ LNFEYR DK T++LSF F D L LG++V+ Sbjct: 39 KQIILDVSIV--SSYTSRKLNFEYRQKDKTTDILSFGYDDFDLYDKMPFLNLGELVICNN 96 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I+ +A + + ++L HG +HL GYDH +K+ M+ + SI L I Sbjct: 97 KIKKQAIIFNHSIKREFLYLFTHGLVHLYGYDHQSEKEKKEMDFIVDSIFNPLKI 151 >gi|319957260|ref|YP_004168523.1| hypothetical protein Nitsa_1526 [Nitratifractor salsuginis DSM 16511] gi|319419664|gb|ADV46774.1| protein of unknown function UPF0054 [Nitratifractor salsuginis DSM 16511] Length = 142 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 4/91 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ ++ TD I LN E+R DK T+VLSFP LG +V++ + + +A Sbjct: 28 EIEVILTDDATIRELNREHRDKDKATDVLSFPL----EGDLPGQPLGSLVISLDHVVQKA 83 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 LG E L L IHG LHLLGYDH D+ Sbjct: 84 GELGHAPEEELALLFIHGLLHLLGYDHETDR 114 >gi|283853555|ref|ZP_06370794.1| protein of unknown function UPF0054 [Desulfovibrio sp. FW1012B] gi|283571054|gb|EFC19075.1| protein of unknown function UPF0054 [Desulfovibrio sp. FW1012B] Length = 143 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 9/105 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E L + LN +Y G+ PTNVLSFP + D LG++ ++ + + EA Sbjct: 37 EYDLRLVGDGEMAALNRDYLGLVGPTNVLSFP----ADDPGRPEYLGEMAVSLDTVAREA 92 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + G+E HL L+ HGFLHL G DH VME L +E Sbjct: 93 FLYGQEPATHLARLLAHGFLHLAGLDH-----GPVMEALTEQAVE 132 >gi|269956974|ref|YP_003326763.1| hypothetical protein Xcel_2187 [Xylanimonas cellulosilytica DSM 15894] gi|269305655|gb|ACZ31205.1| protein of unknown function UPF0054 [Xylanimonas cellulosilytica DSM 15894] Length = 153 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEI 110 ELS++F D+ + L+ + PT+VLSFP D LGDIVL E+ Sbjct: 38 AELSILFVDTTVMTDLHVRWMDEPGPTDVLSFPMDELRPGREGDLTPPGTLGDIVLCPEV 97 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLGYDH + ++ M GL+R +L Sbjct: 98 ATQQALTAGHSAIEEMLLLTTHGILHLLGYDHAEPEEEKEMFGLQRRLL 146 >gi|152990533|ref|YP_001356255.1| hypothetical protein NIS_0786 [Nitratiruptor sp. SB155-2] gi|172048729|sp|A6Q339|RRMF_NITSB RecName: Full=Probable rRNA maturation factor gi|151422394|dbj|BAF69898.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 144 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 7/103 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + L+ D R+ TLN YR IDK T+VLSFP + LG IV+ + + A Sbjct: 34 VELMIVDDERMRTLNKTYRDIDKTTDVLSFPMQ-----EIPNAPLGSIVINADKVLHTAK 88 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LG ++ L IHG LHLLGYDH + D M +E ++ Sbjct: 89 ELGHSAKDEFALLYIHGLLHLLGYDH--ESDNGEMRAMEEKLI 129 >gi|307700639|ref|ZP_07637667.1| translation metalloprotein YbeY [Mobiluncus mulieris FB024-16] gi|307614169|gb|EFN93410.1| translation metalloprotein YbeY [Mobiluncus mulieris FB024-16] Length = 148 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 E++L+ D + L+ + + PT+VLSFP T + MLGDIVL ++ Sbjct: 33 AEVNLMMVDMATMTDLHIRWMDLPGPTDVLSFPMDELTPGQEGQPSAGGMLGDIVLCPDV 92 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L +HG LHLLG+DHV +++ M L+R +L Sbjct: 93 AAEQARDAGHSAVEEMLLLTVHGLLHLLGFDHVTEEEEKTMFTLQRRLL 141 >gi|227874777|ref|ZP_03992930.1| metalloprotease [Mobiluncus mulieris ATCC 35243] gi|269976805|ref|ZP_06183780.1| putative metalloprotease [Mobiluncus mulieris 28-1] gi|306818070|ref|ZP_07451801.1| probable metalloprotease [Mobiluncus mulieris ATCC 35239] gi|227844552|gb|EEJ54708.1| metalloprotease [Mobiluncus mulieris ATCC 35243] gi|269935002|gb|EEZ91561.1| putative metalloprotease [Mobiluncus mulieris 28-1] gi|304649034|gb|EFM46328.1| probable metalloprotease [Mobiluncus mulieris ATCC 35239] Length = 150 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 E++L+ D + L+ + + PT+VLSFP T + MLGDIVL ++ Sbjct: 35 AEVNLMMVDMATMTDLHIRWMDLPGPTDVLSFPMDELTPGQEGQPSAGGMLGDIVLCPDV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L +HG LHLLG+DHV +++ M L+R +L Sbjct: 95 AAEQARDAGHSAVEEMLLLTVHGLLHLLGFDHVTEEEEKTMFTLQRRLL 143 >gi|157364821|ref|YP_001471588.1| hypothetical protein Tlet_1970 [Thermotoga lettingae TMO] gi|157315425|gb|ABV34524.1| protein of unknown function UPF0054 [Thermotoga lettingae TMO] Length = 115 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 10/108 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +++SLVF R+ LN EYR ID PT+VL+F F + G+I + +E Sbjct: 10 IDVSLVFIGERRMRNLNREYRKIDSPTDVLTF---FYEEES-----FGEIFICPSQVEKN 61 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSILE 160 A+ + +E L ++IH LHL GYDH VD+K + E+ + E Sbjct: 62 ASKYSQRYEIELFRVLIHACLHLCGYDHEFVDNKSQEMFHRQEKYLRE 109 >gi|269127453|ref|YP_003300823.1| hypothetical protein Tcur_3246 [Thermomonospora curvata DSM 43183] gi|268312411|gb|ACY98785.1| protein of unknown function UPF0054 [Thermomonospora curvata DSM 43183] Length = 156 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 9/115 (7%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP---------TAFASSDGCSSLMLGDI 104 + ELSL+ D + L+ ++ G PT+VL+FP + +LGD+ Sbjct: 34 LAELSLLLVDEEAMSELHVKWMGEPGPTDVLAFPMDELRPGHRPGGGEEEDPDPALLGDV 93 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 VL + E + G + L L HG LHLLGYDH D ++ M GL+ +L Sbjct: 94 VLCPAVAERQGAEAGHGTQAELELLCTHGILHLLGYDHADPEEHKEMFGLQERLL 148 >gi|291484979|dbj|BAI86054.1| putative metalloprotease [Bacillus subtilis subsp. natto BEST195] Length = 157 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIV 105 ++ E+S+ + I +N EYRG D PT+V+SF + +LGDI+ Sbjct: 36 QDQAEVSVTIVSNDDIHQINKEYRGKDAPTDVISFALEEEGEGEIEIVGAEMPPVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A F+ L L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 96 ISADRTREQAEEYNHSFKRELGFLAVHGFLHLLGYDHMTKEEEEEMFTKQKELLDAYGLK 155 >gi|221310456|ref|ZP_03592303.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. 168] gi|221314779|ref|ZP_03596584.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319702|ref|ZP_03600996.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. JH642] gi|221323979|ref|ZP_03605273.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. SMY] gi|255767580|ref|NP_390410.2| metalloprotease [Bacillus subtilis subsp. subtilis str. 168] gi|321312015|ref|YP_004204302.1| metal-binding heat shock protein [Bacillus subtilis BSn5] gi|251757429|sp|P46347|RRMF_BACSU RecName: Full=Probable rRNA maturation factor gi|225185208|emb|CAB14461.2| putative metal-dependent hydrolase [Bacillus subtilis subsp. subtilis str. 168] gi|320018289|gb|ADV93275.1| metal-binding heat shock protein [Bacillus subtilis BSn5] Length = 157 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIV 105 ++ E+S+ + I +N EYRG D PT+V+SF + +LGDI+ Sbjct: 36 QDQAEVSVTIVSNDDIHQINKEYRGKDAPTDVISFALEEEGEGEIEIVGAEMPPVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A F+ L L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 96 ISADRTREQAEEYNHSFKRELGFLAVHGFLHLLGYDHMTKEEEEEMFTKQKELLDAYGLK 155 >gi|294629266|ref|ZP_06707826.1| metalloprotease [Streptomyces sp. e14] gi|292832599|gb|EFF90948.1| metalloprotease [Streptomyces sp. e14] Length = 165 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 7/115 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-----CSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP G +LGDIVL Sbjct: 34 LSELSVIVVDADAMEQLHIQWMDLPGPTDVMSFPMDELRPPGKDEEEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E+ + + + L L +HG LHLLGYDH + + M GL+ +I++D Sbjct: 94 EVAAKQGAEAPTQHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDD 148 >gi|315604802|ref|ZP_07879861.1| probable metalloprotease [Actinomyces sp. oral taxon 180 str. F0310] gi|315313473|gb|EFU61531.1| probable metalloprotease [Actinomyces sp. oral taxon 180 str. F0310] Length = 149 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 E++++F + +E L+ + + PT+V+SFP + MLGDI + ++ Sbjct: 34 AEVNIIFIEPEPMEELHVRWLDLPGPTDVMSFPMDELKPGTADHPTPPGMLGDICICPQV 93 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLGYDH D + VM L+R +L Sbjct: 94 AARQAAESGHSVAEEMLLLATHGMLHLLGYDHAHDAEREVMFALQRKLL 142 >gi|283458061|ref|YP_003362672.1| putative metal-dependent hydrolase [Rothia mucilaginosa DY-18] gi|283134087|dbj|BAI64852.1| predicted metal-dependent hydrolase [Rothia mucilaginosa DY-18] Length = 173 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEI 113 LS+ + +E ++ E+ + T+V+SFP + + SS MLGDI+L + Sbjct: 54 LSIAIVNEDEMERVHIEWMDLPGATDVMSFPMDELEPGTPENPSSGMLGDIILCPPVAAR 113 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDPYEV 170 + G + L L HG LH LGYDH ++ M G++RSILE+ LG P E Sbjct: 114 QGADAGHSTLDELCLLTTHGILHCLGYDHGTAEEEAEMFGIQRSILEEFLGRPAPVET 171 >gi|94264469|ref|ZP_01288257.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93455100|gb|EAT05324.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 440 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---FASSDGCSSLMLGDIVLAY 108 + ELS++ D R+ LN YRG D+PTNVL+FP A ++ G +LGDIV+A Sbjct: 75 QAAAELSILLVDEQRMGQLNAHYRGQDRPTNVLAFPQADHDREAAGGAGPRLLGDIVIAP 134 Query: 109 EIIEIEANVLGKEFENHL 126 + EA LG + L Sbjct: 135 AVAAREARELGISRQRRL 152 >gi|319947870|ref|ZP_08022057.1| metal-binding heat shock protein [Dietzia cinnamea P4] gi|319438476|gb|EFV93409.1| metal-binding heat shock protein [Dietzia cinnamea P4] Length = 160 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 6/111 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAY 108 ELS+ D + L+ + + PT+V+SFP + G L MLGDIVL Sbjct: 35 AELSITLVDKDTMADLHVTWMNLPGPTDVMSFPMDELTPGGRPDLPEPGPAMLGDIVLCP 94 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G + L L +HG LHLLGYDH + + M GL+ +L Sbjct: 95 AFAADQAASSGHPLAHELALLTVHGCLHLLGYDHAEPAEEREMFGLQNELL 145 >gi|322385837|ref|ZP_08059480.1| metalloprotease [Streptococcus cristatus ATCC 51100] gi|321270122|gb|EFX53039.1| metalloprotease [Streptococcus cristatus ATCC 51100] Length = 165 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLML--- 101 KEN E+++ F + R LN EYR D+PT+V+S AF D + L Sbjct: 33 KEN-KEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDIAFDEEDLADNPELTEM 91 Query: 102 --------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M G Sbjct: 92 LEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFG 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLT 163 >gi|15841879|ref|NP_336916.1| putative metalloprotease [Mycobacterium tuberculosis CDC1551] gi|167968755|ref|ZP_02551032.1| hypothetical protein MtubH3_12240 [Mycobacterium tuberculosis H37Ra] gi|215404293|ref|ZP_03416474.1| putative metalloprotease [Mycobacterium tuberculosis 02_1987] gi|215412113|ref|ZP_03420877.1| putative metalloprotease [Mycobacterium tuberculosis 94_M4241A] gi|215427743|ref|ZP_03425662.1| putative metalloprotease [Mycobacterium tuberculosis T92] gi|215431307|ref|ZP_03429226.1| putative metalloprotease [Mycobacterium tuberculosis EAS054] gi|215446611|ref|ZP_03433363.1| putative metalloprotease [Mycobacterium tuberculosis T85] gi|218754095|ref|ZP_03532891.1| putative metalloprotease [Mycobacterium tuberculosis GM 1503] gi|219558359|ref|ZP_03537435.1| putative metalloprotease [Mycobacterium tuberculosis T17] gi|254232509|ref|ZP_04925836.1| hypothetical protein TBCG_02311 [Mycobacterium tuberculosis C] gi|254365144|ref|ZP_04981190.1| hypothetical protein TBHG_02306 [Mycobacterium tuberculosis str. Haarlem] gi|254551414|ref|ZP_05141861.1| putative metalloprotease [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187370|ref|ZP_05764844.1| putative metalloprotease [Mycobacterium tuberculosis CPHL_A] gi|260201491|ref|ZP_05768982.1| putative metalloprotease [Mycobacterium tuberculosis T46] gi|260205668|ref|ZP_05773159.1| putative metalloprotease [Mycobacterium tuberculosis K85] gi|294994529|ref|ZP_06800220.1| putative metalloprotease [Mycobacterium tuberculosis 210] gi|297634969|ref|ZP_06952749.1| putative metalloprotease [Mycobacterium tuberculosis KZN 4207] gi|297731961|ref|ZP_06961079.1| putative metalloprotease [Mycobacterium tuberculosis KZN R506] gi|298525849|ref|ZP_07013258.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313659295|ref|ZP_07816175.1| metal-binding heat shock protein [Mycobacterium tuberculosis KZN V2475] gi|54040529|sp|P67135|RRMF_MYCBO RecName: Full=Probable rRNA maturation factor gi|54042953|sp|P67134|RRMF_MYCTU RecName: Full=Probable rRNA maturation factor gi|171704548|sp|A1KL57|RRMF_MYCBP RecName: Full=Probable rRNA maturation factor gi|172048108|sp|A5U560|RRMF_MYCTA RecName: Full=Probable rRNA maturation factor gi|13882146|gb|AAK46730.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|124601568|gb|EAY60578.1| hypothetical protein TBCG_02311 [Mycobacterium tuberculosis C] gi|134150658|gb|EBA42703.1| hypothetical protein TBHG_02306 [Mycobacterium tuberculosis str. Haarlem] gi|298495643|gb|EFI30937.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length = 177 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 20/159 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + E L ++ V AK N ELS++ D+ + L Sbjct: 1 MSIEVANESGIDVSEAELVSVARFVIAKMDVN----------PCAELSMLLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFP--------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 + + + PT+V+SFP A G S MLGDIVL E +A G Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPS--MLGDIVLCPEFAAEQAAAAGHSL 108 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 109 GHELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEE 147 >gi|291296194|ref|YP_003507592.1| hypothetical protein Mrub_1814 [Meiothermus ruber DSM 1279] gi|290471153|gb|ADD28572.1| protein of unknown function UPF0054 [Meiothermus ruber DSM 1279] Length = 140 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L+L+ T+ + I L ++ G D PT+VLSFPT + D LGDIV++ + +A Sbjct: 37 LTLILTNDNEIRALKQQHWGEDAPTDVLSFPT-YEPGDPFIPPHLGDIVISLDTARRQAE 95 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LG ++ + L H HLLG+DH + + ++ ILE Sbjct: 96 QLGHSLQHEVKVLAAHSLWHLLGHDHRSETEWEGFRRVQARILE 139 >gi|254392584|ref|ZP_05007761.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294812551|ref|ZP_06771194.1| Putative metalloprotease [Streptomyces clavuligerus ATCC 27064] gi|326440996|ref|ZP_08215730.1| metal-binding heat shock protein [Streptomyces clavuligerus ATCC 27064] gi|197706248|gb|EDY52060.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294325150|gb|EFG06793.1| Putative metalloprotease [Streptomyces clavuligerus ATCC 27064] Length = 165 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVIVVDAEAMEQLHIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCP 93 Query: 109 EIIEIEAN--VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ + G + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVATRQGAEAPTGHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|149919545|ref|ZP_01908025.1| hypothetical protein PPSIR1_10855 [Plesiocystis pacifica SIR-1] gi|149819670|gb|EDM79097.1| hypothetical protein PPSIR1_10855 [Plesiocystis pacifica SIR-1] Length = 166 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 8/121 (6%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLA 107 + E + L + TD + L+ Y G + PT+VLSF + DG L GD+VL Sbjct: 40 HIPPEELAVLGVRITDDEEMSALHLRYMGEEGPTDVLSF-----TGDGPGDL--GDLVLD 92 Query: 108 YEIIEIEANVLGKEFE-NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 ++ IE +A + L++HG HL G+DH D + M ER +L LG+ Sbjct: 93 WQAIERQAAAPTDAARLDEATVLMVHGLAHLTGHDHRDRVEGRRMHLDERRVLRSLGVAS 152 Query: 167 P 167 P Sbjct: 153 P 153 >gi|114326780|ref|YP_743937.1| putative cytoplasmic protein [Granulibacter bethesdensis CGDNIH1] gi|122328235|sp|Q0BVY8|RRMF_GRABC RecName: Full=Probable rRNA maturation factor gi|114314954|gb|ABI61014.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1] Length = 176 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 7/104 (6%) Query: 67 IETLNFEYRGIDKPTNVLSF-PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + LN +RG DKPTNVL+F P ++G G+IVLA ++ EA K +H Sbjct: 77 VRRLNARHRGKDKPTNVLTFEPVGMPGAEG------GEIVLALGVVLREAKAARKRPVHH 130 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L HL++HG LHL G+DH DA ME E I+ LG+ +P++ Sbjct: 131 LAHLLVHGVLHLHGHDHHHAGDARRMEAEEARIMRSLGMPNPWK 174 >gi|255327126|ref|ZP_05368201.1| putative metalloprotease AAur_2230 [Rothia mucilaginosa ATCC 25296] gi|255295744|gb|EET75086.1| putative metalloprotease AAur_2230 [Rothia mucilaginosa ATCC 25296] Length = 173 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEI 113 LS+ + +E ++ E+ + T+V+SFP + + SS MLGDI+L + Sbjct: 54 LSIAIVNEDEMERVHIEWMDLPGATDVMSFPMDELEPGTPENPSSGMLGDIILCPPVAAR 113 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDPYEV 170 + G + L L HG LH LGYDH ++ M G++RSILE+ LG P E Sbjct: 114 QGADAGHSTLDELCLLTTHGILHCLGYDHGTAEEEAEMFGIQRSILEEFLGRPAPVET 171 >gi|217034240|ref|ZP_03439658.1| hypothetical protein HP9810_2g19 [Helicobacter pylori 98-10] gi|216943300|gb|EEC22762.1| hypothetical protein HP9810_2g19 [Helicobacter pylori 98-10] Length = 142 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV + R +N ++RG D T+VLSFP + S LG +V+ + + Sbjct: 28 QIIELVLVSDKTMR--EINRDFRGCDYATDVLSFPL-----EAISHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHSLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|15609504|ref|NP_216883.1| putative metalloprotease [Mycobacterium tuberculosis H37Rv] gi|31793544|ref|NP_856037.1| putative metalloprotease [Mycobacterium bovis AF2122/97] gi|121638246|ref|YP_978470.1| putative metalloprotease [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662199|ref|YP_001283722.1| putative metalloprotease [Mycobacterium tuberculosis H37Ra] gi|148823570|ref|YP_001288324.1| putative metalloprotease [Mycobacterium tuberculosis F11] gi|224990740|ref|YP_002645427.1| hypothetical protein JTY_2375 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798555|ref|YP_003031556.1| hypothetical protein TBMG_01608 [Mycobacterium tuberculosis KZN 1435] gi|289443888|ref|ZP_06433632.1| metalloprotease [Mycobacterium tuberculosis T46] gi|289448009|ref|ZP_06437753.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289553843|ref|ZP_06443053.1| hypothetical protein TBXG_01593 [Mycobacterium tuberculosis KZN 605] gi|289570510|ref|ZP_06450737.1| hypothetical protein TBJG_00877 [Mycobacterium tuberculosis T17] gi|289575061|ref|ZP_06455288.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289746145|ref|ZP_06505523.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289750966|ref|ZP_06510344.1| hypothetical protein TBDG_01176 [Mycobacterium tuberculosis T92] gi|289754472|ref|ZP_06513850.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289758490|ref|ZP_06517868.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289762533|ref|ZP_06521911.1| hypothetical protein TBIG_01770 [Mycobacterium tuberculosis GM 1503] gi|308232114|ref|ZP_07414969.2| hypothetical protein TMAG_02926 [Mycobacterium tuberculosis SUMu001] gi|308369698|ref|ZP_07418742.2| hypothetical protein TMBG_00911 [Mycobacterium tuberculosis SUMu002] gi|308370990|ref|ZP_07423477.2| hypothetical protein TMCG_00467 [Mycobacterium tuberculosis SUMu003] gi|308372215|ref|ZP_07427838.2| hypothetical protein TMDG_00845 [Mycobacterium tuberculosis SUMu004] gi|308373392|ref|ZP_07432143.2| hypothetical protein TMEG_02734 [Mycobacterium tuberculosis SUMu005] gi|308374561|ref|ZP_07436540.2| hypothetical protein TMFG_01331 [Mycobacterium tuberculosis SUMu006] gi|308375864|ref|ZP_07445354.2| hypothetical protein TMGG_00928 [Mycobacterium tuberculosis SUMu007] gi|308376991|ref|ZP_07440782.2| hypothetical protein TMHG_01561 [Mycobacterium tuberculosis SUMu008] gi|308377993|ref|ZP_07481176.2| hypothetical protein TMIG_01044 [Mycobacterium tuberculosis SUMu009] gi|308379183|ref|ZP_07485405.2| hypothetical protein TMJG_00637 [Mycobacterium tuberculosis SUMu010] gi|308380346|ref|ZP_07489619.2| hypothetical protein TMKG_00630 [Mycobacterium tuberculosis SUMu011] gi|308404861|ref|ZP_07494158.2| hypothetical protein TMLG_02116 [Mycobacterium tuberculosis SUMu012] gi|2078032|emb|CAB08472.1| UNKNOWN [Mycobacterium tuberculosis H37Rv] gi|31619137|emb|CAD97249.1| FUNCTION UNKNOWN [Mycobacterium bovis AF2122/97] gi|121493894|emb|CAL72369.1| Function unknown [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148506351|gb|ABQ74160.1| hypothetical protein MRA_2391 [Mycobacterium tuberculosis H37Ra] gi|148722097|gb|ABR06722.1| hypothetical protein TBFG_12393 [Mycobacterium tuberculosis F11] gi|224773853|dbj|BAH26659.1| hypothetical protein JTY_2375 [Mycobacterium bovis BCG str. Tokyo 172] gi|253320058|gb|ACT24661.1| hypothetical protein TBMG_01608 [Mycobacterium tuberculosis KZN 1435] gi|289416807|gb|EFD14047.1| metalloprotease [Mycobacterium tuberculosis T46] gi|289420967|gb|EFD18168.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438475|gb|EFD20968.1| hypothetical protein TBXG_01593 [Mycobacterium tuberculosis KZN 605] gi|289539492|gb|EFD44070.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289544264|gb|EFD47912.1| hypothetical protein TBJG_00877 [Mycobacterium tuberculosis T17] gi|289686673|gb|EFD54161.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289691553|gb|EFD58982.1| hypothetical protein TBDG_01176 [Mycobacterium tuberculosis T92] gi|289695059|gb|EFD62488.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289710039|gb|EFD74055.1| hypothetical protein TBIG_01770 [Mycobacterium tuberculosis GM 1503] gi|289714054|gb|EFD78066.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|308214951|gb|EFO74350.1| hypothetical protein TMAG_02926 [Mycobacterium tuberculosis SUMu001] gi|308326727|gb|EFP15578.1| hypothetical protein TMBG_00911 [Mycobacterium tuberculosis SUMu002] gi|308330140|gb|EFP18991.1| hypothetical protein TMCG_00467 [Mycobacterium tuberculosis SUMu003] gi|308334001|gb|EFP22852.1| hypothetical protein TMDG_00845 [Mycobacterium tuberculosis SUMu004] gi|308337782|gb|EFP26633.1| hypothetical protein TMEG_02734 [Mycobacterium tuberculosis SUMu005] gi|308341463|gb|EFP30314.1| hypothetical protein TMFG_01331 [Mycobacterium tuberculosis SUMu006] gi|308344949|gb|EFP33800.1| hypothetical protein TMGG_00928 [Mycobacterium tuberculosis SUMu007] gi|308349260|gb|EFP38111.1| hypothetical protein TMHG_01561 [Mycobacterium tuberculosis SUMu008] gi|308353880|gb|EFP42731.1| hypothetical protein TMIG_01044 [Mycobacterium tuberculosis SUMu009] gi|308357825|gb|EFP46676.1| hypothetical protein TMJG_00637 [Mycobacterium tuberculosis SUMu010] gi|308361771|gb|EFP50622.1| hypothetical protein TMKG_00630 [Mycobacterium tuberculosis SUMu011] gi|308365393|gb|EFP54244.1| hypothetical protein TMLG_02116 [Mycobacterium tuberculosis SUMu012] gi|323719034|gb|EGB28182.1| hypothetical protein TMMG_01659 [Mycobacterium tuberculosis CDC1551A] gi|326903983|gb|EGE50916.1| hypothetical protein TBPG_01872 [Mycobacterium tuberculosis W-148] gi|328458323|gb|AEB03746.1| hypothetical protein TBSG_01617 [Mycobacterium tuberculosis KZN 4207] Length = 182 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 20/159 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + E L ++ V AK N ELS++ D+ + L Sbjct: 6 MSIEVANESGIDVSEAELVSVARFVIAKMDVN----------PCAELSMLLLDTAAMADL 55 Query: 71 NFEYRGIDKPTNVLSFP--------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 + + + PT+V+SFP A G S MLGDIVL E +A G Sbjct: 56 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPS--MLGDIVLCPEFAAEQAAAAGHSL 113 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 114 GHELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEE 152 >gi|118475619|ref|YP_891672.1| putative metalloprotease [Campylobacter fetus subsp. fetus 82-40] gi|145558830|sp|A0RN89|RRMF_CAMFF RecName: Full=Probable rRNA maturation factor gi|28974225|gb|AAO64226.1| hypothetical protein Cf0020 [Campylobacter fetus] gi|118414845|gb|ABK83265.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus 82-40] Length = 134 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+ LVF + + +N + RG+DK T+VLSFP + +G IV+ ++ + Sbjct: 22 AEVELVFVSNEEMREINRDKRGMDKTTDVLSFPLTYVPH-----FPIGSIVINTDLASSK 76 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A LG ++ + L HG LH+LG+DH +D M E SI+E +G+ Sbjct: 77 ALELGHSTDDEIALLFTHGLLHILGFDHENDDGE--MRRKEISIMEHMGL 124 >gi|42520569|ref|NP_966484.1| hypothetical protein WD0726 [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034707|ref|ZP_01314643.1| hypothetical protein Wendoof_01000541 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630499|ref|YP_002727290.1| hypothetical protein WRi_007500 [Wolbachia sp. wRi] gi|59799057|sp|Q73H48|RRMF_WOLPM RecName: Full=Probable rRNA maturation factor gi|254806603|sp|C0R3K7|RRMF_WOLWR RecName: Full=Probable rRNA maturation factor gi|42410308|gb|AAS14418.1| conserved hypothetical protein TIGR00043 [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592480|gb|ACN95499.1| conserved hypothetical protein [Wolbachia sp. wRi] Length = 150 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 4/109 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+ D + LN ++R +DKPTNVLSFP S++ C LGDI ++ + I+ E++ Sbjct: 42 ISIALADDDLLHQLNLKFREMDKPTNVLSFPYEQLSNE-CD---LGDIAISIDTIKRESH 97 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 H+ H+++HG LHLLGYDH + +M+ LER IL LG N Sbjct: 98 EYYIPILAHIAHMLVHGLLHLLGYDHQKKDEEIIMKNLEREILASLGYN 146 >gi|158313947|ref|YP_001506455.1| putative metalloprotease [Frankia sp. EAN1pec] gi|238686840|sp|A8KYW3|RRMF_FRASN RecName: Full=Probable rRNA maturation factor gi|158109352|gb|ABW11549.1| protein of unknown function UPF0054 [Frankia sp. EAN1pec] Length = 159 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 7/113 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGCS-----SLMLGDIVL 106 + ELS++ + + L+ Y + PT+VL+FP AF S S + +LGD+VL Sbjct: 35 LAELSVMLVEIDAMTDLHVRYMAEEGPTDVLAFPQDEAFEPSWSESPEEDPTTLLGDVVL 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E+ +A G E L L HG LHLLGYDH + ++ M L+ S+L Sbjct: 95 CPEVARRQAAQAGHGMERELHILCTHGILHLLGYDHAEPEEEREMWKLQNSLL 147 >gi|195978546|ref|YP_002123790.1| putative metalloprotease [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226701650|sp|B4U460|RRMF_STREM RecName: Full=Probable rRNA maturation factor gi|195975251|gb|ACG62777.1| putative metal-dependent hydrolase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 165 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S P AF+ D + ++ Sbjct: 37 EMAVTFVTNDRSHALNLEYRDTDRPTDVISLEYKPELPIAFSQEDLELDPDLAGMLQEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISVDKAHEQAEAYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|118618894|ref|YP_907226.1| putative metalloprotease [Mycobacterium ulcerans Agy99] gi|183983657|ref|YP_001851948.1| metal-dependent hydrolase [Mycobacterium marinum M] gi|145558814|sp|A0PTT6|RRMF_MYCUA RecName: Full=Probable rRNA maturation factor gi|238690927|sp|B2HLB7|RRMF_MYCMM RecName: Full=Probable rRNA maturation factor gi|118571004|gb|ABL05755.1| conserved hypothetical metal-dependent hydrolase [Mycobacterium ulcerans Agy99] gi|183176983|gb|ACC42093.1| conserved hypothetical metal-dependent hydrolase [Mycobacterium marinum M] Length = 178 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + L+S FV + ELS+V D+ + L+ + + PT+V+SFP G Sbjct: 16 TELVSVARFVIGKMDVNPGAELSMVLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGG 75 Query: 96 ------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 MLGDIVL E +A G + L L IHG LHLLGYDH + + Sbjct: 76 RPDAPEPGPAMLGDIVLCPEFAAEQAAAAGHSLGHELALLTIHGVLHLLGYDHGEPDEEK 135 Query: 150 VMEGLERSILED 161 M L+ +LE+ Sbjct: 136 EMFALQDRLLEE 147 >gi|332522950|ref|ZP_08399202.1| translation metalloprotein YbeY [Streptococcus porcinus str. Jelinkova 176] gi|332314214|gb|EGJ27199.1| translation metalloprotein YbeY [Streptococcus porcinus str. Jelinkova 176] Length = 165 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----------GCSS 98 E+S+ F + R LN EYR D+PT+V+S P F SD Sbjct: 37 EMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPERPILFDESDLEDNPDLAEMLAEFD 96 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISIDKAREQAQEYGHSFEREMGFLAVHGFLHITGYDHYTPEEEKEMFTLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|154509439|ref|ZP_02045081.1| hypothetical protein ACTODO_01970 [Actinomyces odontolyticus ATCC 17982] gi|293189526|ref|ZP_06608246.1| putative metalloprotease [Actinomyces odontolyticus F0309] gi|153799073|gb|EDN81493.1| hypothetical protein ACTODO_01970 [Actinomyces odontolyticus ATCC 17982] gi|292821616|gb|EFF80555.1| putative metalloprotease [Actinomyces odontolyticus F0309] Length = 149 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEI 110 E++++F + +E L+ + + PT+V+SFP + MLGDI + ++ Sbjct: 34 AEVNIIFIEPEPMEDLHVRWLDLPGPTDVMSFPMDELRPGTADHPTPPGMLGDICICPQV 93 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLGYDH D + VM L+R +L Sbjct: 94 AARQAAESGHSAAEEMLLLATHGMLHLLGYDHATDAEREVMFALQRKLL 142 >gi|158520794|ref|YP_001528664.1| hypothetical protein Dole_0777 [Desulfococcus oleovorans Hxd3] gi|158509620|gb|ABW66587.1| protein of unknown function UPF0054 [Desulfococcus oleovorans Hxd3] Length = 97 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N Y G PTNV++FP + + +LGD+V++ + EA +G E L Sbjct: 1 MNQVYLGRTGPTNVIAFPMQEGAFADLTPGLLGDVVISADTALREARSMGVSLEARFTEL 60 Query: 130 IIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL 162 +IHG LHL GYDH D +A ME R +L+ L Sbjct: 61 LIHGILHLSGYDHEQSDTEAEKMEAKTRELLKML 94 >gi|328950644|ref|YP_004367979.1| metalloprotease ybeY [Marinithermus hydrothermalis DSM 14884] gi|328450968|gb|AEB11869.1| metalloprotease ybeY [Marinithermus hydrothermalis DSM 14884] Length = 141 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 11/129 (8%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 LR L AK + L GY ++++ RI L Y G D PT+VLSFP Sbjct: 16 LRPLLRAKLAKLMEEL---GYAQHA----VTVILCSDRRIRELKRRYWGEDAPTDVLSFP 68 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 T F D LGDI ++ + + +A G E+ ++ L H HLLG+DH ++ Sbjct: 69 T-FEPGDPFIPPHLGDIWISLDTAQRQAREAGHTLEDEVLVLAAHALWHLLGHDHASEE- 126 Query: 148 ACVMEGLER 156 +G R Sbjct: 127 --AWQGFRR 133 >gi|78185693|ref|YP_378127.1| hypothetical protein Syncc9902_2126 [Synechococcus sp. CC9902] gi|123580639|sp|Q3AUM7|RRMF_SYNS9 RecName: Full=Probable rRNA maturation factor gi|78169987|gb|ABB27084.1| Protein of unknown function UPF0054 [Synechococcus sp. CC9902] Length = 180 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIE 112 V L L FT+ I LN ++R PT+VLSF + D ++ LGDI+++ + + Sbjct: 57 VSLGLHFTNDAGIAELNSQWRQKSGPTDVLSFAALDDTPDWLEGEAVELGDIIVSVDTAQ 116 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A L LI HG LHLLG+DH D++ M L+ +L+ G Sbjct: 117 RQAQNHNHSLGYELHWLISHGLLHLLGWDHPDERRLSGMLALQERLLDSTG 167 >gi|58697454|ref|ZP_00372745.1| putative metal-dependent hydrolase [Wolbachia endosymbiont of Drosophila simulans] gi|58536113|gb|EAL59737.1| putative metal-dependent hydrolase [Wolbachia endosymbiont of Drosophila simulans] Length = 160 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 4/109 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+ D + LN ++R +DKPTNVLSFP S++ C LGDI ++ + I+ E++ Sbjct: 52 ISIALADDDLLHQLNLKFREMDKPTNVLSFPYEQLSNE-CD---LGDIAISIDTIKRESH 107 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 H+ H+++HG LHLLGYDH + +M+ LER IL LG N Sbjct: 108 EYYIPILAHIAHMLVHGLLHLLGYDHQKKDEEIIMKNLEREILASLGYN 156 >gi|282898521|ref|ZP_06306511.1| Protein of unknown function UPF0054 [Raphidiopsis brookii D9] gi|281196687|gb|EFA71593.1| Protein of unknown function UPF0054 [Raphidiopsis brookii D9] Length = 174 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSD---GCSSLMLGDIVLAYE 109 E+ L T+ +I+ LN +YR D+PT+VL+F F ++ L LGDIV++ + Sbjct: 56 EIGLQLTNDAQIQELNAQYRQKDQPTDVLAFAALENNFPYTEEMLASQPLYLGDIVISID 115 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A L L HG LHLLG+DH D++ M + +L+ +GI Sbjct: 116 TAIRQAQEREHNLTTELAWLSAHGLLHLLGWDHPDEQSLIEMLNKQSMLLKLVGI 170 >gi|313891316|ref|ZP_07824934.1| translation metalloprotein YbeY [Streptococcus pseudoporcinus SPIN 20026] gi|313120383|gb|EFR43504.1| translation metalloprotein YbeY [Streptococcus pseudoporcinus SPIN 20026] Length = 165 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----------GCSS 98 E+S+ F + R LN EYR D+PT+V+S P F SD Sbjct: 37 EMSVTFVTTERSHELNLEYRDTDRPTDVISLEYKPERPILFEESDLENNPDLAEMLAEFD 96 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISVDKAREQAQEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|190570991|ref|YP_001975349.1| conserved hypothetical protein TIGR00043 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019508|ref|ZP_03335314.1| hypothetical protein C1A_162 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238058883|sp|B3CLC0|RRMF_WOLPP RecName: Full=Probable rRNA maturation factor gi|190357263|emb|CAQ54687.1| conserved hypothetical protein TIGR00043 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994930|gb|EEB55572.1| hypothetical protein C1A_162 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|222825043|dbj|BAH22201.1| hypothetical protein [Wolbachia endosymbiont of Cadra cautella] Length = 152 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 4/103 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+ D + + LN ++R IDKPTNVLSFP SS+ C LGDI +A + IE E++ Sbjct: 42 ISIALADDNLLHQLNLKFREIDKPTNVLSFPCEQLSSE-CD---LGDIAIAVDTIERESH 97 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 H H+++HG LHLLGYDH + + +M+ LE IL Sbjct: 98 EYCISILTHTAHMLVHGLLHLLGYDHQKEDEEIIMKSLESKIL 140 >gi|218513639|ref|ZP_03510479.1| hypothetical protein Retl8_07906 [Rhizobium etli 8C-3] Length = 92 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 11 LDLQIAVENALWGDEIHLRTLC-EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LD+QI++EN W +E L C V+ A AV S+ E+SLVFTD I+ Sbjct: 4 LDIQISIENIGWPEEETLLAFCGRVLGAAAVYLRDSEKQPFPTMPPEVSLVFTDDASIQD 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDG 95 +N E+RG DK TNVLSFP AF G Sbjct: 64 INAEWRGKDKATNVLSFP-AFPVQPG 88 >gi|262195532|ref|YP_003266741.1| hypothetical protein Hoch_2305 [Haliangium ochraceum DSM 14365] gi|262078879|gb|ACY14848.1| protein of unknown function UPF0054 [Haliangium ochraceum DSM 14365] Length = 172 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 19/113 (16%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM------LGDIVLAY 108 +E+SL TD I LN +YRG D PT+VL+F +G L LGD++++ Sbjct: 43 LEVSLRLTDDDEIRALNRDYRGKDTPTDVLAFAMREGPQEGMPPLAAGEAEYLGDLIIS- 101 Query: 109 EIIEIEANVLGK-------EFENHLVHLII---HGFLHLLGYDHVDDKDACVM 151 + A L + E E L L+ HG HLLGYDH DD + M Sbjct: 102 --VPTAAQQLARKRPMDVPEREPLLAELLFLSAHGLCHLLGYDHQDDAEEAEM 152 >gi|225868114|ref|YP_002744062.1| hypothetical protein SZO_05050 [Streptococcus equi subsp. zooepidemicus] gi|225701390|emb|CAW98464.1| conserved hypothetical protein [Streptococcus equi subsp. zooepidemicus] Length = 181 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S P AF+ D + ++ Sbjct: 53 EMAVTFVTNDRSHALNLEYRDTDRPTDVISLEYKPELPIAFSQEDLELDPDLAGMLQEFD 112 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 113 AYIGELFISVDKAHEQAEAYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEI 172 Query: 159 LEDLGIN 165 L G+ Sbjct: 173 LTAYGLT 179 >gi|148992898|ref|ZP_01822517.1| hypothetical protein CGSSp9BS68_07482 [Streptococcus pneumoniae SP9-BS68] gi|149019558|ref|ZP_01834877.1| hypothetical protein CGSSp23BS72_03128 [Streptococcus pneumoniae SP23-BS72] gi|168490214|ref|ZP_02714413.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|147928350|gb|EDK79366.1| hypothetical protein CGSSp9BS68_07482 [Streptococcus pneumoniae SP9-BS68] gi|147930933|gb|EDK81913.1| hypothetical protein CGSSp23BS72_03128 [Streptococcus pneumoniae SP23-BS72] gi|183571419|gb|EDT91947.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|332073300|gb|EGI83779.1| uncharacterized UPF0054 family protein [Streptococcus pneumoniae GA17570] Length = 165 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRNTDRPTDVISLEYKPELEIAFDEEDLLENSELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISSDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|194397080|ref|YP_002037602.1| putative metalloprotease [Streptococcus pneumoniae G54] gi|226702103|sp|B5E486|RRMF_STRP4 RecName: Full=Probable rRNA maturation factor gi|194356747|gb|ACF55195.1| conserved hypothetical protein [Streptococcus pneumoniae G54] Length = 165 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAXMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|21220993|ref|NP_626772.1| putative metalloprotease [Streptomyces coelicolor A3(2)] gi|256787845|ref|ZP_05526276.1| putative metalloprotease [Streptomyces lividans TK24] gi|289771730|ref|ZP_06531108.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|26006934|sp|Q9L2L4|RRMF_STRCO RecName: Full=Probable rRNA maturation factor gi|6723881|emb|CAB66427.1| conserved hypothetical protein SCC117.06 [Streptomyces coelicolor A3(2)] gi|289701929|gb|EFD69358.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 165 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVIVVDAEAMEQLHIQWMDLPGPTDVMSFPMDELRPPSKDEEEAPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ + E + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVAAKQGAEAPTEHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|170289192|ref|YP_001739430.1| hypothetical protein TRQ2_1403 [Thermotoga sp. RQ2] gi|238688755|sp|B1LBP9|RRMF_THESQ RecName: Full=Probable rRNA maturation factor gi|170176695|gb|ACB09747.1| protein of unknown function UPF0054 [Thermotoga sp. RQ2] Length = 150 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 11/139 (7%) Query: 28 LRTLCEVVFAKAVSNLISK-GYFVKENI--VELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +R L E +K + NL K VK+ I V ++++ I+ LN ++RG D PT+VL Sbjct: 2 IRILGEGKGSKLLENLKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDLPTDVL 61 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-V 143 +FP + G+I + I+E A FE L+ ++IHG LHL GYDH Sbjct: 62 TFPL-------MEEDVYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEF 114 Query: 144 DDKDACVMEGLERSILEDL 162 +D+++ M ++ +E++ Sbjct: 115 EDRNSKEMFEKQKKYVEEV 133 >gi|15900844|ref|NP_345448.1| putative metalloprotease [Streptococcus pneumoniae TIGR4] gi|111657971|ref|ZP_01408678.1| hypothetical protein SpneT_02000860 [Streptococcus pneumoniae TIGR4] gi|149010387|ref|ZP_01831758.1| hypothetical protein CGSSp19BS75_03512 [Streptococcus pneumoniae SP19-BS75] gi|182683913|ref|YP_001835660.1| hypothetical protein SPCG_0943 [Streptococcus pneumoniae CGSP14] gi|303259879|ref|ZP_07345854.1| hypothetical protein CGSSp9vBS293_10008 [Streptococcus pneumoniae SP-BS293] gi|303262293|ref|ZP_07348237.1| hypothetical protein CGSSp14BS292_01338 [Streptococcus pneumoniae SP14-BS292] gi|303264715|ref|ZP_07350633.1| hypothetical protein CGSSpBS397_06729 [Streptococcus pneumoniae BS397] gi|303267322|ref|ZP_07353182.1| hypothetical protein CGSSpBS457_11366 [Streptococcus pneumoniae BS457] gi|303269127|ref|ZP_07354906.1| hypothetical protein CGSSpBS458_03184 [Streptococcus pneumoniae BS458] gi|29428248|sp|Q97R63|RRMF_STRPN RecName: Full=Probable rRNA maturation factor gi|238691155|sp|B2IPC1|RRMF_STRPS RecName: Full=Probable rRNA maturation factor gi|14972442|gb|AAK75088.1| conserved hypothetical protein TIGR00043 [Streptococcus pneumoniae TIGR4] gi|147764868|gb|EDK71797.1| hypothetical protein CGSSp19BS75_03512 [Streptococcus pneumoniae SP19-BS75] gi|182629247|gb|ACB90195.1| hypothetical protein SPCG_0943 [Streptococcus pneumoniae CGSP14] gi|301801810|emb|CBW34521.1| conserved hypothetical protein [Streptococcus pneumoniae INV200] gi|302636616|gb|EFL67107.1| hypothetical protein CGSSp14BS292_01338 [Streptococcus pneumoniae SP14-BS292] gi|302639084|gb|EFL69544.1| hypothetical protein CGSSpBS293_10008 [Streptococcus pneumoniae SP-BS293] gi|302641314|gb|EFL71682.1| hypothetical protein CGSSpBS458_03184 [Streptococcus pneumoniae BS458] gi|302643132|gb|EFL73419.1| hypothetical protein CGSSpBS457_11366 [Streptococcus pneumoniae BS457] gi|302645802|gb|EFL76031.1| hypothetical protein CGSSpBS397_06729 [Streptococcus pneumoniae BS397] Length = 165 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRNTDRPTDVISLEYKPELEIAFDEEDLLENSELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|227503130|ref|ZP_03933179.1| metalloprotease [Corynebacterium accolens ATCC 49725] gi|227076191|gb|EEI14154.1| metalloprotease [Corynebacterium accolens ATCC 49725] Length = 206 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 11/100 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDG-------CSSLMLGD 103 E ++ D IE L+ + ++ PT+V+SFP T A+S G MLGD Sbjct: 36 AECTITCVDLKSIEDLHIRWMDLEGPTDVMSFPMDELTPGATSGGGRPDAADPGPAMLGD 95 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 IVL E +A+ G + L L +HG LHLLGYDH Sbjct: 96 IVLCPEFALRQADAAGHSLGHELALLTVHGCLHLLGYDHA 135 >gi|322411294|gb|EFY02202.1| putative metalloprotease [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 165 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+S+ F + R LN EYR D+PT+V+S P F+ D + +M Sbjct: 37 EMSVTFVTNARSHELNLEYRDTDRPTDVISLEYKPETPILFSQDDLAADPSLAEMMAEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISIDKAREQAQDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|108563524|ref|YP_627840.1| putative metalloprotease [Helicobacter pylori HPAG1] gi|122386286|sp|Q1CSA6|RRMF_HELPH RecName: Full=Probable rRNA maturation factor gi|107837297|gb|ABF85166.1| hypothetical protein HPAG1_1099 [Helicobacter pylori HPAG1] Length = 140 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG EN + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHSLENEIALLFIHGVLHLLGYDHEKDK 114 >gi|87310535|ref|ZP_01092664.1| hypothetical protein DSM3645_07710 [Blastopirellula marina DSM 3645] gi|87286756|gb|EAQ78661.1| hypothetical protein DSM3645_07710 [Blastopirellula marina DSM 3645] Length = 165 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENI--VELSLVFTDSHRIETLNFEYRGIDKPTN 82 EI RT +AV I+ F E+I E+S+ D I +N + D PT+ Sbjct: 10 EITRRTQYAAPTDEAVRQAIA-AVFAGESIEAYEVSVALVDDAEIHEVNRRFLQHDYPTD 68 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 V++F ++ D L+ G+IV++ + EA ++ + +IHG LHL+GYD Sbjct: 69 VVTF--NLSADD---DLLEGEIVISCQYAAAEAEKYQWPAKHETLLYVIHGALHLVGYDD 123 Query: 143 VDDKDACVMEGLERSILEDLGINDP 167 +D+D M LER LE +G+ P Sbjct: 124 HEDEDRLTMRRLERVYLEQVGLEPP 148 >gi|225870933|ref|YP_002746880.1| hypothetical protein SEQ_1635 [Streptococcus equi subsp. equi 4047] gi|225700337|emb|CAW94643.1| conserved hypothetical protein [Streptococcus equi subsp. equi 4047] Length = 181 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S P AF+ D + ++ Sbjct: 53 EMAVTFVTNDRSHALNLEYRDTDRPTDVISLEYKPELPIAFSQEDLELDPDLAGMIQEFD 112 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 113 AYIGELFISVDKAHEQAEAYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEI 172 Query: 159 LEDLGIN 165 L G+ Sbjct: 173 LTAYGLT 179 >gi|255292981|dbj|BAH90078.1| hypothetical protein [uncultured bacterium] gi|255293017|dbj|BAH90113.1| hypothetical protein [uncultured bacterium] Length = 152 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 9/128 (7%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFA 91 + L+S FV + + ELS+V D + + +Y PT+VLSFP + Sbjct: 16 TGLVSLATFVLDQLRIHPMAELSVVLVDEATMSAYHEKYMNEPGPTDVLSFPMDELRPPS 75 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + + +LGD+VL I +A G+E + +L++HG LHL+G+DH ++ M Sbjct: 76 DDEEPPAGLLGDVVLCPTITSAQAAEHGREPDEEAEYLLVHGILHLVGFDHGTPEEKAEM 135 Query: 152 EGLERSIL 159 GL+ +L Sbjct: 136 FGLKDRLL 143 >gi|269792677|ref|YP_003317581.1| hypothetical protein Taci_1067 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100312|gb|ACZ19299.1| protein of unknown function UPF0054 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 150 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 10/103 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAYE 109 VE+SL F + + +N +YR +D T+VLSFP F+ G L LGD+++ + Sbjct: 40 VEVSLSFVEPEAMREVNLKYRQVDSSTDVLSFPLWEEDGRFSPPVGWRWLPLGDVLVCVQ 99 Query: 110 IIEIEANVLGKEFENHLVHLII-HGFLHLLGYDHVDDKDACVM 151 +E LG+ V L+I HGFLHLLG+DH D++ M Sbjct: 100 DVE----PLGEGDRARGVLLVIHHGFLHLLGFDHGDEEQRREM 138 >gi|296133914|ref|YP_003641161.1| protein of unknown function UPF0054 [Thermincola sp. JR] gi|296032492|gb|ADG83260.1| protein of unknown function UPF0054 [Thermincola potens JR] Length = 153 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 E+ +V D I LN +YRG+D PT+VLSF + L+LGD+ ++ E Sbjct: 38 AEVGIVLVDDDYIHQLNKQYRGVDSPTDVLSFALIEDGEEEFFEEEEDLLLGDVFISVER 97 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A G F + +L HG HLLGYDH +++ +M E +L L I Sbjct: 98 AQNQAEEYGHSFTREMAYLTAHGMFHLLGYDHNTEEERDIMREKEEQVLTGLNI 151 >gi|148998597|ref|ZP_01826037.1| hypothetical protein CGSSp11BS70_06353 [Streptococcus pneumoniae SP11-BS70] gi|149006356|ref|ZP_01830068.1| hypothetical protein CGSSp18BS74_03564 [Streptococcus pneumoniae SP18-BS74] gi|168575629|ref|ZP_02721565.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|307067624|ref|YP_003876590.1| putative metal-dependent hydrolase [Streptococcus pneumoniae AP200] gi|147755595|gb|EDK62642.1| hypothetical protein CGSSp11BS70_06353 [Streptococcus pneumoniae SP11-BS70] gi|147762133|gb|EDK69095.1| hypothetical protein CGSSp18BS74_03564 [Streptococcus pneumoniae SP18-BS74] gi|183578494|gb|EDT99022.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|306409161|gb|ADM84588.1| Predicted metal-dependent hydrolase [Streptococcus pneumoniae AP200] gi|332075583|gb|EGI86051.1| hypothetical protein SPAR148_0923 [Streptococcus pneumoniae GA17545] gi|332202822|gb|EGJ16891.1| hypothetical protein SPAR69_0936 [Streptococcus pneumoniae GA41317] Length = 165 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|145558835|sp|Q5GS35|RRMF_WOLTR RecName: Full=Probable rRNA maturation factor Length = 150 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 4/109 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+ D + + LN +R ++KPTNVLSFP SS+ C LGDI ++ + + E++ Sbjct: 42 ISIALADDNLLHQLNLRFRQMNKPTNVLSFPCEQLSSE-CD---LGDIAISIDTVRKESD 97 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 H+ H+++HG LHLLGYDH + VM+ LE IL LG N Sbjct: 98 EYHIPIPAHVAHMLVHGLLHLLGYDHQKKGEEVVMKNLEGKILASLGYN 146 >gi|323704189|ref|ZP_08115768.1| protein of unknown function UPF0054 [Thermoanaerobacterium xylanolyticum LX-11] gi|323536255|gb|EGB26027.1| protein of unknown function UPF0054 [Thermoanaerobacterium xylanolyticum LX-11] Length = 159 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 10/114 (8%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEI 110 F D+ I LN YR +DK T+VLSFP D +GDIV++ E Sbjct: 44 FVDNEEIHKLNKYYRNVDKETDVLSFPLVEFEEIYTDIDEEDDDLDEVQPIGDIVISLEK 103 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A G F + +L H HL+GYDH + + VM E ++ L I Sbjct: 104 AKQQAEEYGHSFIREVAYLTAHSMFHLMGYDHETEDEKKVMRAKEEEVMRRLKI 157 >gi|312148985|gb|ADQ29056.1| conserved hypothetical protein [Borrelia burgdorferi N40] Length = 155 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 18/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + F +V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLNVFYD--FVVSVLNALSISDF------ELSVILCDNAYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+V+++E ++ A E Sbjct: 50 QELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILED 161 L + IHG LHL+GY H +D M L+ +IL++ Sbjct: 110 IYEELQRVTIHGILHLMGYKHETNDFQKESMLILQENILKE 150 >gi|261839888|gb|ACX99653.1| hypothetical protein HPKB_1090 [Helicobacter pylori 52] Length = 140 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N ++RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDETMR--EINRDFRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHSLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|15902913|ref|NP_358463.1| putative metalloprotease [Streptococcus pneumoniae R6] gi|116516344|ref|YP_816337.1| putative metalloprotease [Streptococcus pneumoniae D39] gi|148984709|ref|ZP_01817977.1| hypothetical protein CGSSp3BS71_01657 [Streptococcus pneumoniae SP3-BS71] gi|148988410|ref|ZP_01819857.1| hypothetical protein CGSSp6BS73_06270 [Streptococcus pneumoniae SP6-BS73] gi|149002518|ref|ZP_01827452.1| hypothetical protein CGSSp14BS69_12356 [Streptococcus pneumoniae SP14-BS69] gi|168483036|ref|ZP_02707988.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|168485919|ref|ZP_02710427.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|168491056|ref|ZP_02715199.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|168494396|ref|ZP_02718539.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|169833180|ref|YP_001694412.1| putative metalloprotease [Streptococcus pneumoniae Hungary19A-6] gi|221231730|ref|YP_002510882.1| hypothetical protein SPN23F_08920 [Streptococcus pneumoniae ATCC 700669] gi|225854471|ref|YP_002735983.1| putative metalloprotease [Streptococcus pneumoniae JJA] gi|225856625|ref|YP_002738136.1| putative metalloprotease [Streptococcus pneumoniae P1031] gi|225858760|ref|YP_002740270.1| putative metalloprotease [Streptococcus pneumoniae 70585] gi|225861146|ref|YP_002742655.1| putative metalloprotease [Streptococcus pneumoniae Taiwan19F-14] gi|237650884|ref|ZP_04525136.1| putative metalloprotease [Streptococcus pneumoniae CCRI 1974] gi|237821334|ref|ZP_04597179.1| putative metalloprotease [Streptococcus pneumoniae CCRI 1974M2] gi|289167811|ref|YP_003446080.1| hypothetical protein smi_0968 [Streptococcus mitis B6] gi|298229557|ref|ZP_06963238.1| putative metalloprotease [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254474|ref|ZP_06978060.1| putative metalloprotease [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503023|ref|YP_003724963.1| metalloprotease [Streptococcus pneumoniae TCH8431/19A] gi|303254434|ref|ZP_07340540.1| putative metalloprotease [Streptococcus pneumoniae BS455] gi|307127482|ref|YP_003879513.1| hypothetical protein SP670_1352 [Streptococcus pneumoniae 670-6B] gi|307704697|ref|ZP_07641596.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK597] gi|307706465|ref|ZP_07643274.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK321] gi|307708602|ref|ZP_07645066.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|307709147|ref|ZP_07645606.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK564] gi|29428192|sp|Q8DQ35|RRMF_STRR6 RecName: Full=Probable rRNA maturation factor gi|122278777|sp|Q04KW1|RRMF_STRP2 RecName: Full=Probable rRNA maturation factor gi|238688290|sp|B1IBC7|RRMF_STRPI RecName: Full=Probable rRNA maturation factor gi|254799900|sp|C1C6U4|RRMF_STRP7 RecName: Full=Probable rRNA maturation factor gi|254799998|sp|C1CRT3|RRMF_STRZT RecName: Full=Probable rRNA maturation factor gi|254807259|sp|B8ZP64|RRMF_STRPJ RecName: Full=Probable rRNA maturation factor gi|254807268|sp|C1CDW2|RRMF_STRZJ RecName: Full=Probable rRNA maturation factor gi|254807292|sp|C1CK48|RRMF_STRZP RecName: Full=Probable rRNA maturation factor gi|15458473|gb|AAK99673.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076920|gb|ABJ54640.1| conserved hypothetical protein TIGR00043 [Streptococcus pneumoniae D39] gi|147759455|gb|EDK66447.1| hypothetical protein CGSSp14BS69_12356 [Streptococcus pneumoniae SP14-BS69] gi|147923100|gb|EDK74215.1| hypothetical protein CGSSp3BS71_01657 [Streptococcus pneumoniae SP3-BS71] gi|147926091|gb|EDK77165.1| hypothetical protein CGSSp6BS73_06270 [Streptococcus pneumoniae SP6-BS73] gi|168995682|gb|ACA36294.1| conserved hypothetical protein [Streptococcus pneumoniae Hungary19A-6] gi|172043366|gb|EDT51412.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|183571014|gb|EDT91542.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|183574714|gb|EDT95242.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|183575625|gb|EDT96153.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|220674190|emb|CAR68718.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC 700669] gi|225721312|gb|ACO17166.1| conserved hypothetical protein [Streptococcus pneumoniae 70585] gi|225722204|gb|ACO18057.1| conserved hypothetical protein [Streptococcus pneumoniae JJA] gi|225724973|gb|ACO20825.1| conserved hypothetical protein [Streptococcus pneumoniae P1031] gi|225727792|gb|ACO23643.1| conserved hypothetical protein [Streptococcus pneumoniae Taiwan19F-14] gi|288907378|emb|CBJ22215.1| conserved hypothetical protein [Streptococcus mitis B6] gi|298238618|gb|ADI69749.1| metalloprotease [Streptococcus pneumoniae TCH8431/19A] gi|301799943|emb|CBW32526.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141] gi|302598601|gb|EFL65641.1| putative metalloprotease [Streptococcus pneumoniae BS455] gi|306484544|gb|ADM91413.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] gi|307615351|gb|EFN94560.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|307618175|gb|EFN97333.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK321] gi|307620093|gb|EFN99210.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK564] gi|307621744|gb|EFO00782.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK597] gi|327389245|gb|EGE87590.1| hypothetical protein SPAR5_0931 [Streptococcus pneumoniae GA04375] gi|332076241|gb|EGI86707.1| hypothetical protein SPAR68_0966 [Streptococcus pneumoniae GA41301] gi|332201433|gb|EGJ15503.1| hypothetical protein SPAR93_1028 [Streptococcus pneumoniae GA47368] Length = 165 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|293365234|ref|ZP_06611951.1| metalloprotease [Streptococcus oralis ATCC 35037] gi|307703773|ref|ZP_07640714.1| uncharacterized protein family UPF0054 family protein [Streptococcus oralis ATCC 35037] gi|315612996|ref|ZP_07887907.1| metalloprotease [Streptococcus sanguinis ATCC 49296] gi|291316684|gb|EFE57120.1| metalloprotease [Streptococcus oralis ATCC 35037] gi|307622608|gb|EFO01604.1| uncharacterized protein family UPF0054 family protein [Streptococcus oralis ATCC 35037] gi|315315106|gb|EFU63147.1| metalloprotease [Streptococcus sanguinis ATCC 49296] Length = 165 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDIAFDEEDLLENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|111221447|ref|YP_712241.1| putative metalloprotease [Frankia alni ACN14a] gi|122954432|sp|Q0RP74|RRMF_FRAAA RecName: Full=Probable rRNA maturation factor gi|111148979|emb|CAJ60659.1| conserved hypothetical protein [Frankia alni ACN14a] Length = 181 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASS-----DGCSSLMLGDIVL 106 + ELS++ + + L+ Y G + PT+VLSF AF +S D + +LGD+VL Sbjct: 35 LAELSVMLVEEKAMADLHVRYMGEEGPTDVLSFAQDDAFDASWSESVDDDPTTLLGDVVL 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ +A G E L L HG LHLLGYDH + + M ++ +L Sbjct: 95 CPDVARRQAEQAGHSHERELHLLCTHGILHLLGYDHAEPDEEREMWKIQNKLL 147 >gi|227543020|ref|ZP_03973069.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51866] gi|227181242|gb|EEI62214.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51866] Length = 174 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 7/113 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLA 107 VE+++ D IE L+ + ++ PT+V+SFP SS G LGDI+L Sbjct: 36 VEVTITCVDLDTIEDLHVRWLDLEGPTDVMSFPMDDISSTGGRPDAADPGPAYLGDIILC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + + +A+ G + L L +HG LHLLGYDH + M L+ IL+ Sbjct: 96 PDFAQKQADKAGHSLNHELDLLTVHGCLHLLGYDHAKPNEEQHMFALQNDILK 148 >gi|239618150|ref|YP_002941472.1| protein of unknown function UPF0054 [Kosmotoga olearia TBF 19.5.1] gi|239506981|gb|ACR80468.1| protein of unknown function UPF0054 [Kosmotoga olearia TBF 19.5.1] Length = 145 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 6/96 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L+++ T + N YR PT+VLSF + GDIV++ E IE +A Sbjct: 38 LNVLLTTDEEMTYYNETYRHKKGPTDVLSFEYGLDDPEAV-----GDIVISLETIEKQAK 92 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVM 151 G F+ L ++IHG LH+LGYDH D+++A +M Sbjct: 93 EFGNTFQEELSLMLIHGVLHILGYDHEGDEEEAKIM 128 >gi|172041012|ref|YP_001800726.1| putative metalloprotease [Corynebacterium urealyticum DSM 7109] gi|171852316|emb|CAQ05292.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 200 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDG--CSSLMLGDIVLA 107 ELS+ D I L+ + + PT+V+SFP + DG S MLGDI+L Sbjct: 41 AELSIHIVDEETIADLHLRWLNLPGPTDVMSFPMDELTPGWGRKDGPPVSPAMLGDIMLC 100 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + +A G + L L +HG LHLLG+DHV ++ M ++ +L Sbjct: 101 PSFAKGQAERAGHSLAHELDLLTVHGVLHLLGFDHVTPEEEQQMFSIQNEVL 152 >gi|220909854|ref|YP_002485165.1| hypothetical protein Cyan7425_4494 [Cyanothece sp. PCC 7425] gi|254803919|sp|B8HK54|RRMF_CYAP4 RecName: Full=Probable rRNA maturation factor gi|219866465|gb|ACL46804.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 7425] Length = 169 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-----AFASSDGCSSLMLGDIVLAYEI 110 EL L TD I +LN YR +PT+VL+F + D L LGDIV++ + Sbjct: 47 ELCLRLTDDGEIASLNSFYRQQPQPTDVLAFAALEVEVPRSPPDQTELLHLGDIVISVDT 106 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 + ++ L L HGFLHLLG+DH D M + +L +G+ +P Sbjct: 107 AQRQSLAGQHSLTVELAWLAAHGFLHLLGWDHPDPASLEQMLKQQSILLAAVGLENP 163 >gi|296130045|ref|YP_003637295.1| protein of unknown function UPF0054 [Cellulomonas flavigena DSM 20109] gi|296021860|gb|ADG75096.1| protein of unknown function UPF0054 [Cellulomonas flavigena DSM 20109] Length = 150 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 +L + D+ + L+ + PT+VLSFP T D +LGD+VL E+ Sbjct: 35 ADLFVRLVDTATMTDLHVRWMDEPGPTDVLSFPMDELTPGREGDPAGPGVLGDVVLCPEV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLGYDHV+ + M L+R +L Sbjct: 95 AATQARAAGHSTAEEMLLLTTHGILHLLGYDHVEPDEEKEMFALQRRLL 143 >gi|206900820|ref|YP_002251042.1| hypothetical protein DICTH_1213 [Dictyoglomus thermophilum H-6-12] gi|206739923|gb|ACI18981.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12] Length = 142 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 4/107 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 N ++S+VF ++ +I LN +YR D PT+VLSF ++G+I ++ + Sbjct: 36 NKYDISVVFVNNEKIRELNSKYRKKDVPTDVLSFSLG----KDPKGRIIGEIYISIDTAR 91 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +++ K + + L +HG LH+LGYDH ++D ME ++++ Sbjct: 92 VQSEENNKNLIDEVAFLTLHGLLHILGYDHEKEEDYREMEKETKNLI 138 >gi|323126736|gb|ADX24033.1| putative metalloprotease [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 165 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+S+ F + R LN EYR D+PT+V+S P F+ D + +M Sbjct: 37 EMSVTFVTNARSHELNLEYRDTDRPTDVISLEYKPETPILFSQDDLAADPSLAEMMAEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISIDKAREQAEDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|297559685|ref|YP_003678659.1| hypothetical protein Ndas_0708 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844133|gb|ADH66153.1| protein of unknown function UPF0054 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 162 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 4/110 (3%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----MLGDIVLAYE 109 + ELS+V D + L+ + PT+VLSFP G +LGD+++ + Sbjct: 35 LAELSVVLVDEEPMADLHVRWMDEPGPTDVLSFPMDELRPGGPGRTSEPGVLGDVIICPQ 94 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + E +A G E + L HG LHLLGYDH + ++ M GL+ IL Sbjct: 95 VAERQAEKAGHGTEAEIDLLCTHGILHLLGYDHAEPEEHKEMFGLQGEIL 144 >gi|322374472|ref|ZP_08048986.1| putative metalloprotease [Streptococcus sp. C300] gi|321279972|gb|EFX57011.1| putative metalloprotease [Streptococcus sp. C300] Length = 165 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDIAFDEEDLLENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAKEYGHSFEREMGFLAVHGFLHINGYDHYTPEEETEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|15639637|ref|NP_219087.1| putative metalloprotease [Treponema pallidum subsp. pallidum str. Nichols] gi|189025875|ref|YP_001933647.1| metalloprotease [Treponema pallidum subsp. pallidum SS14] gi|6686126|sp|O83656|RRMF_TREPA RecName: Full=Probable rRNA maturation factor gi|238689336|sp|B2S3N9|RRMF_TREPS RecName: Full=Probable rRNA maturation factor gi|3322948|gb|AAC65623.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018450|gb|ACD71068.1| hypothetical protein TPASS_0650 [Treponema pallidum subsp. pallidum SS14] gi|291060019|gb|ADD72754.1| putative metalloprotease [Treponema pallidum subsp. pallidum str. Chicago] Length = 160 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 14/131 (10%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-- 88 +C V+ ++A+S+ +LS+V I LN++YRGID PT+VLSF Sbjct: 27 VCAVLDSQAISHW------------DLSIVCCTDAFIRRLNYDYRGIDSPTDVLSFENDG 74 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G + GDI+++ E + + ++IHG LHL G DH D+ Sbjct: 75 EYCDDAGTRFFLAGDIIISLESVRENSERFHVAAHEEFKRVLIHGILHLSGMDHQDNSPG 134 Query: 149 CVMEGLERSIL 159 M L+ IL Sbjct: 135 QEMLRLQERIL 145 >gi|313680087|ref|YP_004057826.1| hypothetical protein Ocepr_1196 [Oceanithermus profundus DSM 14977] gi|313152802|gb|ADR36653.1| protein of unknown function UPF0054 [Oceanithermus profundus DSM 14977] Length = 141 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++++ RI L + G D T+VLSFPT + D LGD+ ++ + + +A Sbjct: 37 EVTVILCSDRRIRELKRAHWGEDAATDVLSFPT-YEPGDPFLPPHLGDVWISLDTAQRQA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 G E+ ++ L HG HLLG+DH ++ ++R ILE Sbjct: 96 REQGHALEDEVLTLAAHGLWHLLGHDHTTEEAWRGFRNVQRRILE 140 >gi|331266550|ref|YP_004326180.1| putative metalloprotease [Streptococcus oralis Uo5] gi|326683222|emb|CBZ00840.1| putative metalloprotease [Streptococcus oralis Uo5] Length = 165 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDIAFDEEDLLENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|251781920|ref|YP_002996222.1| putative metalloprotease [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390549|dbj|BAH81008.1| hypothetical protein SDEG_0506 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 182 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+S+ F + R LN EYR D+PT+V+S P F+ D + +M Sbjct: 54 EMSVTFVTNARSHELNLEYRDTDRPTDVISLEYKPETPILFSQDDLAADPSLAEMMAEFD 113 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 114 AYIGELFISIDKAREQAEDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEI 173 Query: 159 LEDLGIN 165 L G+ Sbjct: 174 LTAYGLT 180 >gi|306836631|ref|ZP_07469597.1| metalloprotease [Corynebacterium accolens ATCC 49726] gi|304567461|gb|EFM43060.1| metalloprotease [Corynebacterium accolens ATCC 49726] Length = 206 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 11/100 (11%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDG-------CSSLMLGD 103 E ++ D IE L+ + ++ PT+V+SFP T A+S G MLGD Sbjct: 36 AECTITCVDLKSIEDLHIRWMDLEGPTDVMSFPMDELTPGATSGGGRPDAADPGPSMLGD 95 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 IVL E +A+ G + L L +HG LHLLGYDH Sbjct: 96 IVLCPEFALRQADAAGHSLGHELALLTVHGCLHLLGYDHA 135 >gi|257463002|ref|ZP_05627405.1| metal-binding protein [Fusobacterium sp. D12] gi|317060616|ref|ZP_07925101.1| metal-binding protein [Fusobacterium sp. D12] gi|313686292|gb|EFS23127.1| metal-binding protein [Fusobacterium sp. D12] Length = 164 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 5/105 (4%) Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIEIEANVL 118 T +H+I+ +N E+R D PT+V+SF A+ ++ LGDIV++ E + +A Sbjct: 57 TGNHQIQVINREFRQKDSPTDVISF--AYHENEDFLVGPYDTLGDIVISLERVGEQAKEY 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 F +++ HG LH+LGYDH+D+ D M E IL G Sbjct: 115 NHSFTREFYYVLTHGILHILGYDHIDENDKREMREREEEILGHFG 159 >gi|302560725|ref|ZP_07313067.1| metalloprotease [Streptomyces griseoflavus Tu4000] gi|302478343|gb|EFL41436.1| metalloprotease [Streptomyces griseoflavus Tu4000] Length = 165 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP D +LGDIVL Sbjct: 34 LSELSVIVVDAGAMEQLHIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCP 93 Query: 109 EII--EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ + E + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVAARQGEEAPTRHTMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|261885819|ref|ZP_06009858.1| putative metalloprotease [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 134 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 7/110 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+ LVF + + +N + RG+DK T+VLSFP + +G IV+ ++ + Sbjct: 22 AEVELVFVSNEEMREINRDKRGMDKTTDVLSFPLTYVPH-----FPIGSIVINTDLASSK 76 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A LG ++ + L HG LH+LG+DH +D M E S++E +G+ Sbjct: 77 ALELGHSTDDEIALLFTHGLLHILGFDHENDDGE--MRRKEISMMEHMGL 124 >gi|195941799|ref|ZP_03087181.1| putative metalloprotease [Borrelia burgdorferi 80a] gi|216264854|ref|ZP_03436846.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|221217391|ref|ZP_03588862.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|224533033|ref|ZP_03673639.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|224533910|ref|ZP_03674495.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225549226|ref|ZP_03770199.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|225549724|ref|ZP_03770689.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|215981327|gb|EEC22134.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|221192669|gb|EEE18885.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|224512027|gb|EEF82422.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|224512913|gb|EEF83279.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225369684|gb|EEG99132.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|225370084|gb|EEG99524.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|312148321|gb|ADQ30980.1| conserved hypothetical protein [Borrelia burgdorferi JD1] Length = 155 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 18/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + F +V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLSVFYD--FVVSVLNALSISDF------ELSVILCDNAYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+V+++E ++ A E Sbjct: 50 QELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILED 161 L + IHG LHL+GY H +D M L+ +IL++ Sbjct: 110 IYEELQRVTIHGILHLMGYKHETNDFQKESMLILQENILKE 150 >gi|317178539|dbj|BAJ56327.1| putative metalloprotease [Helicobacter pylori F30] Length = 142 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV + R +N ++RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDKTMR--EINRDFRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHRLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|297194455|ref|ZP_06911853.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718735|gb|EDY62643.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 165 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVIVVDAEAMEQLHIQWMDLPGPTDVMSFPMDELRPPSKDDEEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ + + + + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVAKKQGEEAPTQHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|332670852|ref|YP_004453860.1| hypothetical protein Celf_2346 [Cellulomonas fimi ATCC 484] gi|332339890|gb|AEE46473.1| protein of unknown function UPF0054 [Cellulomonas fimi ATCC 484] Length = 150 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 ELS++ + + L+ ++ PT+VLSFP + + +LGD+VL E+ Sbjct: 35 TELSIMLVGTDVMTDLHVKWMDEPGPTDVLSFPMDELRPGREGEPTPAGLLGDVVLCPEV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G L+ L HG LHLLGYDHV+ ++ M L+R +L Sbjct: 95 AAQQARAAGHSTAEELLLLTTHGILHLLGYDHVEPEEEKEMFALQRRLL 143 >gi|306825400|ref|ZP_07458740.1| probable metalloprotease [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432338|gb|EFM35314.1| probable metalloprotease [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 165 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDIAFDEEDLLENPEFAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|284106930|ref|ZP_06386310.1| metalloprotease [Candidatus Poribacteria sp. WGA-A3] gi|283830003|gb|EFC34280.1| metalloprotease [Candidatus Poribacteria sp. WGA-A3] Length = 151 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%) Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 R+ LN YR D+ T+VL+F A+ + +S +LGD+V++ +A + Sbjct: 46 RMRRLNRTYRNQDRTTDVLAF--AYREAQTGASPLLGDVVISVPAARRQAKARSHSLDEE 103 Query: 126 LVHLIIHGFLHLLGYDH 142 ++ L+IHG LHL+GYDH Sbjct: 104 VLRLLIHGVLHLVGYDH 120 >gi|320010900|gb|ADW05750.1| protein of unknown function UPF0054 [Streptomyces flavogriseus ATCC 33331] Length = 165 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 15/118 (12%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVIVVDTAAMEQLHIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKEFENH------LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ A G++ E L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EV----AKKQGEDAETQHSMDEELQLLTVHGVLHLLGYDHEEPDEKAAMFGLQAAIVD 147 >gi|38234288|ref|NP_940055.1| putative metalloprotease [Corynebacterium diphtheriae NCTC 13129] gi|59799118|sp|Q6NG17|RRMF_CORDI RecName: Full=Probable rRNA maturation factor gi|38200551|emb|CAE50246.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 196 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIVLA 107 E ++ D + L+ + ++ PT+V+SFP + MLGDI+L Sbjct: 36 AEATISVVDVATMSDLHVRWMDLEGPTDVMSFPMDELTPGMGRPDAQPFGPAMLGDIILC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E +A G + + L L HG LHLLGYDH++ +D M L+ +L+D Sbjct: 96 PEFAAKQAAKAGHDMGHELALLTTHGCLHLLGYDHIEPEDEQEMFALQNELLQD 149 >gi|58584858|ref|YP_198431.1| metal-dependent hydrolase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419174|gb|AAW71189.1| Predicted metal-dependent hydrolase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 171 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 4/109 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+ D + + LN +R ++KPTNVLSFP SS+ C LGDI ++ + + E++ Sbjct: 63 ISIALADDNLLHQLNLRFRQMNKPTNVLSFPCEQLSSE-CD---LGDIAISIDTVRKESD 118 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 H+ H+++HG LHLLGYDH + VM+ LE IL LG N Sbjct: 119 EYHIPIPAHVAHMLVHGLLHLLGYDHQKKGEEVVMKNLEGKILASLGYN 167 >gi|251772247|gb|EES52817.1| conserved protein of unknown function [Leptospirillum ferrodiazotrophum] Length = 180 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 V ++ +LSLV + R+ LN YRG T+VLSF S LG+IV++ Sbjct: 30 VGQDHCDLSLVLVNDKRMRELNRTYRGKPSTTDVLSFEGPPGSPPRMPRF-LGEIVISVP 88 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSI 158 +A G E+ L +L+IHG HLLG+DH ++D +M+ E I Sbjct: 89 RAHRQAMTAGLSPEDELSNLLIHGVCHLLGFDHERGEEDQRIMKAEEEKI 138 >gi|239941042|ref|ZP_04692979.1| putative metalloprotease [Streptomyces roseosporus NRRL 15998] gi|239987521|ref|ZP_04708185.1| putative metalloprotease [Streptomyces roseosporus NRRL 11379] gi|291444482|ref|ZP_06583872.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347429|gb|EFE74333.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 165 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVIVVDTDAMEQLHIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ + + + + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVAKKQGEEAPTQHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|15645774|ref|NP_207951.1| putative metalloprotease [Helicobacter pylori 26695] gi|6647979|sp|O25775|RRMF_HELPY RecName: Full=Probable rRNA maturation factor gi|2314318|gb|AAD08206.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 140 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ I +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDET--IREINKDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG EN + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHSLENEIALLFIHGVLHLLGYDHEKDK 114 >gi|194476814|ref|YP_002048993.1| hypothetical protein PCC_0342 [Paulinella chromatophora] gi|171191821|gb|ACB42783.1| hypothetical protein PCC_0342 [Paulinella chromatophora] Length = 186 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 15/154 (9%) Query: 7 NLPRLDLQIAVE-----NALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLV 60 + P LDL +E +W D L +F +S+L S+ + I L L Sbjct: 4 SFPDLDLAFRIECKELSTGIWTDPNKGYKLWHELFRVWLSDLSSELPTIFQAEIYTLGLR 63 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--------SSDGCSSLM-LGDIVLAYEII 111 + +I+ +N ++R DKPT+VLSF A S+ + L+ LGDI+++ E Sbjct: 64 LINDTQIQKINRDWRQNDKPTDVLSFAANSAEVFHSMSESNIQLNKLVELGDIIISLESA 123 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 +A L E L L HG LHLLG+DH ++ Sbjct: 124 ARQARELNHSLEEELHWLASHGLLHLLGWDHPNE 157 >gi|270292909|ref|ZP_06199120.1| putative metalloprotease [Streptococcus sp. M143] gi|270278888|gb|EFA24734.1| putative metalloprotease [Streptococcus sp. M143] Length = 165 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDIAFDEEDLLENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAYEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|15827258|ref|NP_301521.1| metalloprotease [Mycobacterium leprae TN] gi|221229736|ref|YP_002503152.1| putative metalloprotease [Mycobacterium leprae Br4923] gi|2851628|sp|Q49752|RRMF_MYCLE RecName: Full=Probable rRNA maturation factor gi|254806550|sp|B8ZUT0|RRMF_MYCLB RecName: Full=Probable rRNA maturation factor gi|13092807|emb|CAC30136.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932843|emb|CAR70721.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 178 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 10/115 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TAFASSDGCSSLMLGDIVL 106 ELS+V D+ + L+ + + PT+V+SFP A+ G S MLGDIVL Sbjct: 35 AELSMVLLDTAAMADLHMRWMDLPGPTDVMSFPMDEFEPGGRPDAAEPGPS--MLGDIVL 92 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E +A G + L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 93 CPEFAAQQAAAEGHSLGHELALLTIHGVLHLLGYDHGEPDEEKEMFALQGRLLEE 147 >gi|87123560|ref|ZP_01079411.1| hypothetical protein RS9917_06855 [Synechococcus sp. RS9917] gi|86169280|gb|EAQ70536.1| hypothetical protein RS9917_06855 [Synechococcus sp. RS9917] Length = 196 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 6/118 (5%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-- 95 +A + L G + L L F D I LN +R K T+VLSF A DG Sbjct: 49 RADTELTCPGPVRTAQAISLGLQFCDDATIAALNGTWRQKPKATDVLSF--AALDGDGPM 106 Query: 96 --CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + LGDI+++ + +A G + L L+ HG LHLLG+DH D+ M Sbjct: 107 PDAPCVELGDIIVSVDTAGRQAMEQGHGLVHELRWLVSHGLLHLLGWDHPDEAQLTAM 164 >gi|182438796|ref|YP_001826515.1| putative metalloprotease [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779451|ref|ZP_08238716.1| metalloprotease ybeY [Streptomyces cf. griseus XylebKG-1] gi|238689002|sp|B1VY47|RRMF_STRGG RecName: Full=Probable rRNA maturation factor gi|178467312|dbj|BAG21832.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659784|gb|EGE44630.1| metalloprotease ybeY [Streptomyces cf. griseus XylebKG-1] Length = 165 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVIVVDTDAMEQLHIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ + + + + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVAKKQGEEAPTQHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|317486292|ref|ZP_07945124.1| hypothetical protein HMPREF0179_02482 [Bilophila wadsworthia 3_1_6] gi|316922462|gb|EFV43716.1| hypothetical protein HMPREF0179_02482 [Bilophila wadsworthia 3_1_6] Length = 169 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-- 87 C +A+S ++ EL LV + N Y G PTNVLSFP Sbjct: 35 PFCRAELHRALSAMLRA---AGSGPAELDLVLVRDAGMADYNLRYMGCHGPTNVLSFPID 91 Query: 88 -TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 D + LG +V + + + E + G++ E H + L+ HG HL+GYDH + Sbjct: 92 EQIAGPEDEDVPVQLGSLVFSVDTLHRETLLYGQDPEEHCLRLLAHGLGHLVGYDHGPEM 151 Query: 147 D 147 D Sbjct: 152 D 152 >gi|1303823|dbj|BAA12479.1| YqfG [Bacillus subtilis] Length = 157 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 6/120 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIV 105 ++ E+S+ + I +N EYRG D PT+V+SF + +LG+I+ Sbjct: 36 QDQAEVSVTIVSNDDIHQINKEYRGKDAPTDVISFALEEEGEGEIEIVGAEMPPVLGNII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + +A F+ L L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 96 ISADRTREQAEEYNHSFKRELGFLAVHGFLHLLGYDHMTKEEEEEMFTKQKELLDAYGLK 155 >gi|239979364|ref|ZP_04701888.1| putative metalloprotease [Streptomyces albus J1074] gi|291451239|ref|ZP_06590629.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354188|gb|EFE81090.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 165 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVIVVDPEAMEQLHIQWMDLPGPTDVMSFPMDELRPPVKDEEEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 ++ + + + L L +HG LHLLGYDH + + M GL+++I++ Sbjct: 94 DVARQQGQDAPTQHSMDEELQLLTVHGVLHLLGYDHEEPGEKAEMFGLQQAIVD 147 >gi|308535206|ref|YP_002137815.2| hypothetical protein Gbem_0998 [Geobacter bemidjiensis Bem] gi|308052551|gb|ACH38019.2| protein of unknown function UPF0054 [Geobacter bemidjiensis Bem] Length = 155 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 2/107 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS+ I +N +Y G DK TNV+SF + +LGD+V++ + E Sbjct: 40 AELSISIVGDRAIRVINRDYLGRDKATNVISFAMQEGEFGAVNPELLGDVVISVDTAARE 99 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSIL 159 A G+ F + L L++HG LH+ GYDH + +A ME ER I Sbjct: 100 AEEAGETFLSRLYFLLMHGILHITGYDHERSGEAEAARMEAKEREIF 146 >gi|330893093|gb|EGH25754.1| metal-binding heat shock protein [Pseudomonas syringae pv. mori str. 301020] Length = 114 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 14/125 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA E + DE R CE+ G + EL++ D + L Sbjct: 4 LDLQIASETSA-PDEARFRLWCEM------------GLRQRSADSELTIRLVDENEGREL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H++ Sbjct: 51 NHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWAHMV 109 Query: 131 IHGFL 135 IHG L Sbjct: 110 IHGCL 114 >gi|148272750|ref|YP_001222311.1| putative metalloprotease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166231413|sp|A5CRB1|RRMF_CLAM3 RecName: Full=Probable rRNA maturation factor gi|147830680|emb|CAN01620.1| putative metal-dependent hydrolase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 153 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 EL++V D +E L+ ++ PT+VLSFP + +LGDIV+ ++ Sbjct: 35 AELAIVMVDEGAMEQLHVQWMDEPGPTDVLSFPMDELRPGTEDRPTPAGLLGDIVVCPQV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLG+DH + + M GL+R IL Sbjct: 95 AAEQAVTAGHSTMEEILLLTAHGILHLLGFDHAEPDEEREMFGLQRDIL 143 >gi|46198991|ref|YP_004658.1| metal-binding protein [Thermus thermophilus HB27] gi|55981014|ref|YP_144311.1| hypothetical protein TTHA1045 [Thermus thermophilus HB8] gi|62901332|sp|Q72JT5|RRMF_THET2 RecName: Full=Probable rRNA maturation factor gi|62901421|sp|Q5SJG3|RRMF_THET8 RecName: Full=Probable rRNA maturation factor gi|46196615|gb|AAS81031.1| hypothetical conserved metal-binding protein [Thermus thermophilus HB27] gi|55772427|dbj|BAD70868.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 139 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 4/100 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++++ T R+ L E+ G D+ T+VLSFP + D LGDI ++ + +A Sbjct: 36 VTVILTGDRRLRALKREWWGEDEATDVLSFPH-YEPGDPFVPPHLGDIWISLDTARRQAE 94 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 G E ++ L HG HLLG+DH ++D EG R Sbjct: 95 ARGASLEEEVLVLAAHGLWHLLGHDHQKEED---WEGFRR 131 >gi|15594406|ref|NP_212194.1| putative metalloprotease [Borrelia burgdorferi B31] gi|218249454|ref|YP_002374591.1| hypothetical protein BbuZS7_0061 [Borrelia burgdorferi ZS7] gi|223889176|ref|ZP_03623765.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|226320768|ref|ZP_03796324.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|226322028|ref|ZP_03797553.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|6686087|sp|O51087|RRMF_BORBU RecName: Full=Probable rRNA maturation factor gi|226734032|sp|B7J0Z6|RRMF_BORBZ RecName: Full=Probable rRNA maturation factor gi|2687941|gb|AAC66448.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|218164642|gb|ACK74703.1| conserved hypothetical protein [Borrelia burgdorferi ZS7] gi|223885425|gb|EEF56526.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|226232618|gb|EEH31372.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|226233823|gb|EEH32548.1| conserved hypothetical protein [Borrelia burgdorferi 29805] Length = 155 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 18/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + F +V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLNVFYD--FVVSVLNALSISDF------ELSVILCDNAYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+V+++E ++ A E Sbjct: 50 QELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILED 161 L + IHG LHL+GY H +D M L+ +IL++ Sbjct: 110 IYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILKE 150 >gi|170782109|ref|YP_001710442.1| putative metalloprotease [Clavibacter michiganensis subsp. sepedonicus] gi|189038996|sp|B0RCR5|RRMF_CLAMS RecName: Full=Probable rRNA maturation factor gi|169156678|emb|CAQ01836.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 153 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 EL++V D +E L+ ++ PT+VLSFP + +LGDIV+ ++ Sbjct: 35 AELAIVMVDEGAMEQLHVQWMDEPGPTDVLSFPMDELRPGTEDRPTPAGLLGDIVVCPQV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLG+DH + + M GL+R IL Sbjct: 95 AAEQAVTAGHSTMEEILLLTAHGILHLLGFDHAEPDEEREMFGLQRDIL 143 >gi|227495952|ref|ZP_03926263.1| metalloprotease [Actinomyces urogenitalis DSM 15434] gi|226834506|gb|EEH66889.1| metalloprotease [Actinomyces urogenitalis DSM 15434] Length = 152 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 EL+++F D + L+ + + PT+V+SFP + LGDIVL ++ Sbjct: 35 AELNILFIDPEPMAELHVRWLDLPGPTDVMSFPMDELRPGTEDSETPAGTLGDIVLCPQV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLGYDH ++++ M L+R +L Sbjct: 95 AAKQALEAGHSAPEEMLLLTTHGILHLLGYDHAEEEEKKEMFALQRQLL 143 >gi|283955287|ref|ZP_06372787.1| hypothetical protein C414_000440025 [Campylobacter jejuni subsp. jejuni 414] gi|283793201|gb|EFC31970.1| hypothetical protein C414_000440025 [Campylobacter jejuni subsp. jejuni 414] Length = 136 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 6/105 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+F D+ ++ +N E R DK T+VLSFP L LG +V+ ++ + +A Sbjct: 22 DVELIFVDNKEMQEINLEQRKQDKTTDVLSFPLENIDE----KLPLGSVVINVDLAKEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LG +E + L IH LHLLG+DH + D M E+ ++E Sbjct: 78 KELGHSYEEEVSLLFIHAMLHLLGFDH--EVDNGEMREKEKELIE 120 >gi|148263839|ref|YP_001230545.1| hypothetical protein Gura_1782 [Geobacter uraniireducens Rf4] gi|146397339|gb|ABQ25972.1| protein of unknown function UPF0054 [Geobacter uraniireducens Rf4] Length = 129 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELSL I LN +Y DKPTNV+SF + +LGD++++ + EA Sbjct: 15 ELSLTIVGDRSIRRLNRDYLERDKPTNVISFAMQEGLFGELNPEVLGDVIISADTAAREA 74 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSIL 159 G F L L++HG LH+ GYDH + +A ME R I Sbjct: 75 EEGGMPFFARLSFLLLHGILHITGYDHERSGESEARRMEAKAREIF 120 >gi|111114881|ref|YP_709499.1| putative metalloprotease [Borrelia afzelii PKo] gi|123341437|sp|Q0SPA5|RRMF_BORAP RecName: Full=Probable rRNA maturation factor gi|110890155|gb|ABH01323.1| conserved hypothetical protein [Borrelia afzelii PKo] Length = 152 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 14/138 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + F +V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLSIFYD--FILSVLNTLSISDF------ELSVILCDNVYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + LN ++R ++PT+VLSF + D G + + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNEVNEDLVDGINYKIQGDLIISFEYLKFSAQEFNVEIYE 109 Query: 125 HLVHLIIHGFLHLLGYDH 142 L + IHG LHL+GY H Sbjct: 110 ELQRVTIHGILHLMGYKH 127 >gi|326432698|gb|EGD78268.1| hypothetical protein PTSG_09333 [Salpingoeca sp. ATCC 50818] Length = 180 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 8/112 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-------LGDIVLAY 108 ++++ F + R+ +N +YRG+ T+VLSFP ++ G + LGDI L+ Sbjct: 42 DMAVTFVSAERMREINQQYRGVGASTDVLSFPFHEVTTPGTLPPVEFEDEKDLGDIFLSL 101 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + I+ + ++ L + HG HLLGYDH +A M ER ILE Sbjct: 102 DTIQAQ-QTSHLTLQDELKVVATHGLCHLLGYDHDTQANATKMAEKEREILE 152 >gi|33864330|ref|NP_895890.1| hypothetical protein PMT2065 [Prochlorococcus marinus str. MIT 9313] gi|46577390|sp|Q7V498|RRMF_PROMM RecName: Full=Probable rRNA maturation factor gi|33641110|emb|CAE22239.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 187 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 6/110 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS----SDGCSSLMLGDIVLAYE 109 ++ L L TD I LN +R + T+VLSFP S +D C + LGDIV++ + Sbjct: 71 MLSLGLQLTDDATITELNHSWRQRSESTDVLSFPALDNSLVLPTDTC--VELGDIVVSVQ 128 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + +A E L L+ HG LHLLG+DH D+ M + +L Sbjct: 129 TAQRQAKQHSHELGLELRWLVSHGLLHLLGWDHPTDQSLKTMLSYQEQLL 178 >gi|261838486|gb|ACX98252.1| hypothetical protein KHP_1056 [Helicobacter pylori 51] Length = 142 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV + R +N + RG D T+VLSFP + S LG +V+ + + Sbjct: 28 QIIELVLVSDGTMR--EINRDLRGCDYATDVLSFPL-----EAISHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHRLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|228478259|ref|ZP_04062867.1| conserved hypothetical protein [Streptococcus salivarius SK126] gi|228249938|gb|EEK09208.1| conserved hypothetical protein [Streptococcus salivarius SK126] Length = 165 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----------TAFASSDGCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S A + + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDISFDEEELAENPELAEMMGEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 SYIGELFISVDKAHEQAEDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|329116194|ref|ZP_08244911.1| translation metalloprotein YbeY [Streptococcus parauberis NCFD 2020] gi|326906599|gb|EGE53513.1| translation metalloprotein YbeY [Streptococcus parauberis NCFD 2020] Length = 176 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+S+ F + R LN EYR D+PT+V+S P F D + +M Sbjct: 48 EMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEIPILFDQGDMEADPDLAEMMAEFD 107 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + + +A G FE + L +HGFLH+ GYDH + M L+ I Sbjct: 108 AYIGELFISIDKAKEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPAEEKEMFTLQEEI 167 Query: 159 LEDLGIN 165 L G+ Sbjct: 168 LTAYGLT 174 >gi|317180891|dbj|BAJ58677.1| putative metalloprotease [Helicobacter pylori F32] Length = 140 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N ++RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDETMR--EINRDFRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 ENALKLGHRLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|324993801|gb|EGC25720.1| metalloprotease [Streptococcus sanguinis SK405] gi|324994880|gb|EGC26793.1| metalloprotease [Streptococcus sanguinis SK678] gi|327463075|gb|EGF09396.1| metalloprotease [Streptococcus sanguinis SK1] gi|327490234|gb|EGF22022.1| metalloprotease [Streptococcus sanguinis SK1058] Length = 165 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL------------- 99 E+++ F + R LN EYR D+PT+V+S P S D L Sbjct: 37 EMAVTFVSNERSHELNLEYRDTDRPTDVISLEYKPELDVSVDEEDLLDHPELAEMLEDFD 96 Query: 100 -MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|296876079|ref|ZP_06900133.1| probable metalloprotease [Streptococcus parasanguinis ATCC 15912] gi|296432790|gb|EFH18583.1| probable metalloprotease [Streptococcus parasanguinis ATCC 15912] Length = 165 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-----------FASSDGCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S A + + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEMEISFDEEDLAENPELAEMMAEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 TYIGELFISIDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|312868384|ref|ZP_07728584.1| translation metalloprotein YbeY [Streptococcus parasanguinis F0405] gi|311096129|gb|EFQ54373.1| translation metalloprotein YbeY [Streptococcus parasanguinis F0405] Length = 165 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-----------FASSDGCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S A + + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEMEISFDEEDLAENPELAEMMAEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 TYIGELFISIDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|104162024|emb|CAJ75732.1| predicted metal-dependent hydrolaseinG [uncultured Thermotogales bacterium] Length = 121 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 6/90 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +I L+++ TD IE +N E+R ++PT+VLSF G +GDIV++ + I Sbjct: 13 DIGTLNILLTDDSEIERINKEFRHKNEPTDVLSFQY------GLEEETIGDIVISLDRIS 66 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +A FE L +++IHG LH++GY H Sbjct: 67 EQAAEFDNSFEEELYYILIHGVLHVIGYTH 96 >gi|71903040|ref|YP_279843.1| putative metalloprotease [Streptococcus pyogenes MGAS6180] gi|71802135|gb|AAX71488.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS6180] Length = 182 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+S+ F + R LN EYR D+PT+V+S P F+ D + +M Sbjct: 54 EMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDFAADPSLAEMMAEFD 113 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + ++ G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 114 AYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEI 173 Query: 159 LEDLGIN 165 L G+ Sbjct: 174 LTAYGLT 180 >gi|307330993|ref|ZP_07610124.1| protein of unknown function UPF0054 [Streptomyces violaceusniger Tu 4113] gi|306883379|gb|EFN14434.1| protein of unknown function UPF0054 [Streptomyces violaceusniger Tu 4113] Length = 165 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAYEI 110 ELS++ D+ +E L+ ++ + PT+V+SFP + +LGDIVL E+ Sbjct: 36 ELSVIVVDADAMEQLHIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEV 95 Query: 111 IEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + + E + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 96 AKKQGEEAPTEHSMDEELHLLTVHGVLHLLGYDHEEADERAEMFGLQAAIVD 147 >gi|15674590|ref|NP_268764.1| putative metalloprotease [Streptococcus pyogenes M1 GAS] gi|19745597|ref|NP_606733.1| metalloprotease [Streptococcus pyogenes MGAS8232] gi|28896434|ref|NP_802784.1| metalloprotease [Streptococcus pyogenes SSI-1] gi|56808802|ref|ZP_00366516.1| COG0319: Predicted metal-dependent hydrolase [Streptococcus pyogenes M49 591] gi|139474289|ref|YP_001129005.1| metalloprotease [Streptococcus pyogenes str. Manfredo] gi|209558957|ref|YP_002285429.1| putative metalloprotease [Streptococcus pyogenes NZ131] gi|306827876|ref|ZP_07461144.1| probable metalloprotease [Streptococcus pyogenes ATCC 10782] gi|54039916|sp|P67141|RRMF_STRP3 RecName: Full=Probable rRNA maturation factor gi|54039950|sp|P67142|RRMF_STRP8 RecName: Full=Probable rRNA maturation factor gi|54042635|sp|P67140|RRMF_STRP1 RecName: Full=Probable rRNA maturation factor gi|73920979|sp|Q5XDG5|RRMF_STRP6 RecName: Full=Probable rRNA maturation factor gi|145558819|sp|Q1J824|RRMF_STRPF RecName: Full=Probable rRNA maturation factor gi|145558820|sp|Q1JN23|RRMF_STRPC RecName: Full=Probable rRNA maturation factor gi|145558822|sp|Q1JI69|RRMF_STRPD RecName: Full=Probable rRNA maturation factor gi|145558825|sp|Q1JD48|RRMF_STRPB RecName: Full=Probable rRNA maturation factor gi|166231383|sp|A2RG22|RRMF_STRPG RecName: Full=Probable rRNA maturation factor gi|226701662|sp|B5XK72|RRMF_STRPZ RecName: Full=Probable rRNA maturation factor gi|13621700|gb|AAK33485.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|19747723|gb|AAL97232.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|28811685|dbj|BAC64617.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|134272536|emb|CAM30801.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] gi|209540158|gb|ACI60734.1| hypothetical protein Spy49_0401 [Streptococcus pyogenes NZ131] gi|304429924|gb|EFM32965.1| probable metalloprotease [Streptococcus pyogenes ATCC 10782] Length = 165 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+S+ F + R LN EYR D+PT+V+S P F+ D + +M Sbjct: 37 EMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + ++ G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|329934652|ref|ZP_08284693.1| metal-dependent hydrolase [Streptomyces griseoaurantiacus M045] gi|329305474|gb|EGG49330.1| metal-dependent hydrolase [Streptomyces griseoaurantiacus M045] Length = 165 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 7/114 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D+ +E L+ ++ + PT+V+SFP D +LGDIVL Sbjct: 34 LSELSVIVVDADAMEQLHRQWMDLPGPTDVMSFPMDELRPPGKDDDEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E+ + + L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 94 EVAAKQGAEAATRHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVD 147 >gi|124024428|ref|YP_001018735.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9303] gi|123964714|gb|ABM79470.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9303] Length = 187 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 6/110 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS----SDGCSSLMLGDIVLAYE 109 ++ L L TD I LN +R + T+VLSFP S +D C + LGDIV++ + Sbjct: 71 MLSLGLQLTDDATITELNHAWRQRSETTDVLSFPALDNSLVLPTDTC--VELGDIVVSVQ 128 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + +A E L L+ HG LHLLG+DH D+ M + +L Sbjct: 129 TAQRQAKQHSHELGLELRWLVSHGLLHLLGWDHPTDQSLKTMLSYQEQLL 178 >gi|21909871|ref|NP_664139.1| putative metalloprotease [Streptococcus pyogenes MGAS315] gi|21904058|gb|AAM78942.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] Length = 175 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+S+ F + R LN EYR D+PT+V+S P F+ D + +M Sbjct: 47 EMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFD 106 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + ++ G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 107 AYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEI 166 Query: 159 LEDLGIN 165 L G+ Sbjct: 167 LTAYGLT 173 >gi|50913759|ref|YP_059731.1| putative metalloprotease [Streptococcus pyogenes MGAS10394] gi|71910201|ref|YP_281751.1| metalloprotease [Streptococcus pyogenes MGAS5005] gi|94988019|ref|YP_596120.1| putative metalloprotease [Streptococcus pyogenes MGAS9429] gi|94989898|ref|YP_597998.1| putative metalloprotease [Streptococcus pyogenes MGAS10270] gi|94991905|ref|YP_600004.1| putative metalloprotease [Streptococcus pyogenes MGAS2096] gi|94993783|ref|YP_601881.1| metalloprotease [Streptococcus pyogenes MGAS10750] gi|50902833|gb|AAT86548.1| Hypothetical Metal-Binding Protein [Streptococcus pyogenes MGAS10394] gi|71852983|gb|AAZ51006.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS5005] gi|94541527|gb|ABF31576.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS9429] gi|94543406|gb|ABF33454.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS10270] gi|94545413|gb|ABF35460.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS2096] gi|94547291|gb|ABF37337.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS10750] Length = 182 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+S+ F + R LN EYR D+PT+V+S P F+ D + +M Sbjct: 54 EMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFD 113 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + ++ G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 114 AYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEI 173 Query: 159 LEDLGIN 165 L G+ Sbjct: 174 LTAYGLT 180 >gi|322376462|ref|ZP_08050955.1| putative metalloprotease [Streptococcus sp. M334] gi|321282269|gb|EFX59276.1| putative metalloprotease [Streptococcus sp. M334] Length = 165 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S +F D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELEISFDEEDLLENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|317182412|dbj|BAJ60196.1| putative metalloprotease [Helicobacter pylori F57] Length = 143 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 31 QIIELVLVSDETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 83 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 84 TNALKLGHRLEDEIALLFIHGVLHLLGYDHEKDK 117 >gi|169628759|ref|YP_001702408.1| putative metalloprotease [Mycobacterium abscessus ATCC 19977] gi|238688929|sp|B1MN42|RRMF_MYCA9 RecName: Full=Probable rRNA maturation factor gi|169240726|emb|CAM61754.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 170 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 10/115 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TAFASSDGCSSLMLGDIVL 106 ELS++ D + L+ + + PT+V+SFP A G S MLGDIVL Sbjct: 35 AELSMMLVDLAAMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPS--MLGDIVL 92 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + +A G + L L +HG LHLLGYDH + ++ M L+ +L+D Sbjct: 93 CPQFAAEQAEAAGHSLAHELALLTVHGVLHLLGYDHAEPEEEREMFALQNQLLQD 147 >gi|145558817|sp|Q48UW8|RRMF_STRPM RecName: Full=Probable rRNA maturation factor Length = 165 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------PTAFASSD-----GCSSLM---- 100 E+S+ F + R LN EYR D+PT+V+S P F+ D + +M Sbjct: 37 EMSVTFVTNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDFAADPSLAEMMAEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + ++ G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|312864823|ref|ZP_07725054.1| translation metalloprotein YbeY [Streptococcus downei F0415] gi|311099950|gb|EFQ58163.1| translation metalloprotein YbeY [Streptococcus downei F0415] Length = 165 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTA---FASSD-----GCSSL 99 KEN E+++ F D+ +I +N +YR +D+PT+V+S P F+ D +++ Sbjct: 33 KEN-KEMAITFVDNEKIHQINLDYRDMDRPTDVVSLEYKPETDIVFSEEDLETDPDLAAV 91 Query: 100 M------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 M +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M Sbjct: 92 MEDYDAYIGELFISVDKAHEQAESYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFT 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLT 163 >gi|171780164|ref|ZP_02921068.1| hypothetical protein STRINF_01952 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281512|gb|EDT46947.1| hypothetical protein STRINF_01952 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 165 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 26/165 (15%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E +EI +TL + FA + KEN E+++ F + R LN EYR Sbjct: 8 ETGQVSEEIKNQTLDLLQFAAEKTG--------KEN-KEMAVTFVTNERSHELNLEYRDT 58 Query: 78 DKPTNVLSF---PTA---FASSDGCSSLML-----------GDIVLAYEIIEIEANVLGK 120 D+PT+V+S P + F+ D + L G++ ++ + +A G Sbjct: 59 DRPTDVISLEYKPESDLTFSEEDLAENPELAEMLDEFDAYIGELFISVDKAREQAKEYGH 118 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 FE + L++HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 119 SFEREMGFLVVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLK 163 >gi|327398193|ref|YP_004339062.1| metalloprotease ybeY [Hippea maritima DSM 10411] gi|327180822|gb|AEA33003.1| metalloprotease ybeY [Hippea maritima DSM 10411] Length = 144 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 17/119 (14%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+ + + E +F K+ N + EL++V D I LN +++ PTNV Sbjct: 15 DQTTIESFVEFLFKKSGEN----------SEKELNIVLVDDDEITKLNEQFKNRKGPTNV 64 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 LSF G +LGDI ++ + IE EA + + +L+ +I HGFLHL+GY H Sbjct: 65 LSFY-------GYDGDILGDIAISSDTIEREALEKKENAKEYLLFIIAHGFLHLVGYTH 116 >gi|269926173|ref|YP_003322796.1| protein of unknown function UPF0054 [Thermobaculum terrenum ATCC BAA-798] gi|269789833|gb|ACZ41974.1| protein of unknown function UPF0054 [Thermobaculum terrenum ATCC BAA-798] Length = 131 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S++ TD +I L+ E+ GI+ PT+V+S+P++ + LGDI ++ E E +A Sbjct: 14 VSILLTDDDQIAKLHLEHMGIEGPTDVMSWPSSDFERENFH--FLGDIAVSCETAEAQAR 71 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYD 141 G E + L +HG LHLLG+D Sbjct: 72 DQGHPVETEVSVLAVHGLLHLLGWD 96 >gi|254458014|ref|ZP_05071441.1| conserved hypothetical protein TIGR00043 [Campylobacterales bacterium GD 1] gi|207085407|gb|EDZ62692.1| conserved hypothetical protein TIGR00043 [Campylobacterales bacterium GD 1] Length = 139 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L+ T I+ +N E+R ID PT+VLSFP LG IV++ +E + Sbjct: 28 EIELIITSKDEIKEINKEHRNIDAPTDVLSFPYVEMPMSP-----LGSIVISSAHVEELS 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 LG ++ L L IHG LHLLG+DH Sbjct: 83 RELGHTQDDELALLFIHGLLHLLGFDH 109 >gi|254382694|ref|ZP_04998051.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194341596|gb|EDX22562.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 165 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 11/123 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAYEI 110 ELS++ D +E L+ ++ + PT+V+SFP + +LGDIVL E+ Sbjct: 36 ELSVIVVDEGAMEQLHIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEV 95 Query: 111 IEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE----DLGI 164 + + + + L L +HG LHLLGYDH + + M GL+ +I++ + GI Sbjct: 96 AKKQGEDAPTQHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRGERGI 155 Query: 165 NDP 167 P Sbjct: 156 TGP 158 >gi|55820696|ref|YP_139138.1| putative metalloprotease [Streptococcus thermophilus LMG 18311] gi|55822587|ref|YP_141028.1| putative metalloprotease [Streptococcus thermophilus CNRZ1066] gi|116627504|ref|YP_820123.1| putative metalloprotease [Streptococcus thermophilus LMD-9] gi|62901187|sp|Q5M0P3|RRMF_STRT1 RecName: Full=Probable rRNA maturation factor gi|62901191|sp|Q5M579|RRMF_STRT2 RecName: Full=Probable rRNA maturation factor gi|122267898|sp|Q03LJ5|RRMF_STRTD RecName: Full=Probable rRNA maturation factor gi|55736681|gb|AAV60323.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|55738572|gb|AAV62213.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] gi|116100781|gb|ABJ65927.1| Predicted metal-dependent hydrolase [Streptococcus thermophilus LMD-9] gi|312278022|gb|ADQ62679.1| Putative metalloprotease [Streptococcus thermophilus ND03] Length = 165 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-----------FASSDGCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S A + + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDITFDEEDLAENPELAEMMGEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G +E + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 SYIGELFISIDKAREQAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|210135319|ref|YP_002301758.1| putative metalloprotease [Helicobacter pylori P12] gi|226701640|sp|B6JN00|RRMF_HELP2 RecName: Full=Probable rRNA maturation factor gi|210133287|gb|ACJ08278.1| metalloprotease [Helicobacter pylori P12] Length = 140 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELILVSGETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINVPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG EN + L IHG LHLLGYDH DK Sbjct: 81 ENALKLGHSLENEIALLFIHGVLHLLGYDHEKDK 114 >gi|302534335|ref|ZP_07286677.1| conserved hypothetical protein [Streptomyces sp. C] gi|302443230|gb|EFL15046.1| conserved hypothetical protein [Streptomyces sp. C] Length = 165 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 11/125 (8%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAY 108 + ELS++ D +E L+ ++ + PT+V+SFP + +LGDIVL Sbjct: 34 LSELSVIVIDEDAMEQLHIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCP 93 Query: 109 EIIEIEANVLGKE--FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE----DL 162 E+ + + + + L L +HG LHLLGYDH + + M GL+ +I++ + Sbjct: 94 EVAKKQGDEAPTRHSMDEELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRAER 153 Query: 163 GINDP 167 GI P Sbjct: 154 GITGP 158 >gi|302528837|ref|ZP_07281179.1| metal-dependent hydrolase [Streptomyces sp. AA4] gi|302437732|gb|EFL09548.1| metal-dependent hydrolase [Streptomyces sp. AA4] Length = 183 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 41 SNLISKGYFVKEN-----IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TA 89 ++++S + E + ELS++ +E L+ + + PT+V++FP + Sbjct: 16 ASIVSAARYTLEKMEVSPLAELSILCVTLEVMEDLHERWMDLPGPTDVMAFPMDELDSSR 75 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + S +LGDIVL + +A G + L L +HG LHLLGYDH + + Sbjct: 76 RPDAPDSSPALLGDIVLCPAFAKDQAKTAGHRLIDELHLLTVHGCLHLLGYDHAEPAEER 135 Query: 150 VMEGLERSIL 159 M GL++ IL Sbjct: 136 EMFGLQKRIL 145 >gi|169331623|ref|ZP_02860816.1| hypothetical protein ANASTE_00007 [Anaerofustis stercorihominis DSM 17244] gi|169259685|gb|EDS73651.1| hypothetical protein ANASTE_00007 [Anaerofustis stercorihominis DSM 17244] Length = 152 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 3/103 (2%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 A++ + F K + V +SLV +S I+TLN YR IDK T+VLSFP + Sbjct: 27 AINKTLEYENFKKPSQVSVSLV--NSEEIKTLNNYYRNIDKTTDVLSFPMDDDEFED-EV 83 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 ++LGD+VL + + +A G + + +L +H LHLLG+D Sbjct: 84 IILGDVVLCLDKAKEQAIEFGHSLDREICYLTVHSTLHLLGFD 126 >gi|224534895|ref|ZP_03675464.1| conserved hypothetical protein [Borrelia spielmanii A14S] gi|224513835|gb|EEF84160.1| conserved hypothetical protein [Borrelia spielmanii A14S] Length = 155 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 17/141 (12%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + F +V N +S F ELS++ D+ I Sbjct: 1 MSKFDLNLLVENIKFE---HLSIFYD--FILSVLNTLSISDF------ELSVILCDNVYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNEDNEVNEGLVDGINYKIQGDLIISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDH 142 L + IHG LHL+GY H Sbjct: 110 IYEELQRVTIHGILHLMGYKH 130 >gi|238809604|dbj|BAH69394.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 173 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + L E + + + NL + F V + + T++ I+ LN EYR D PT++LSF Sbjct: 35 KFLFEKEYKQILENLAKE--FGLNQTVSVDVTITNNDEIQKLNKEYRNKDYPTDILSFGL 92 Query: 89 A-FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + + LG++V+++E +E +A +L HG +HL+GYDH + + Sbjct: 93 EDWELFENMPIYPLGELVISHEKVEAQAQEFVHSIRREYCYLFAHGLIHLMGYDHETEVE 152 Query: 148 ACVMEGLERSILEDLGIN 165 M L I E L I+ Sbjct: 153 RAEMNKLVDLIFEPLKIS 170 >gi|257068880|ref|YP_003155135.1| hypothetical protein Bfae_17240 [Brachybacterium faecium DSM 4810] gi|256559698|gb|ACU85545.1| conserved hypothetical protein TIGR00043 [Brachybacterium faecium DSM 4810] Length = 153 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEI 110 E+S++F D +E L+ ++ + PT+V+SFP +LGD+VL + Sbjct: 35 TEMSILFVDEAAMEKLHVQWLDLPGPTDVMSFPMDELIPGTPQQPAPEGLLGDVVLCPSV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L +H LHLLGYDH+++ + M L+R +L Sbjct: 95 AAAQAAEAGHSPVEEMLLLTVHSILHLLGYDHMEEDERTEMFDLQRKLL 143 >gi|227504551|ref|ZP_03934600.1| metalloprotease [Corynebacterium striatum ATCC 6940] gi|227198871|gb|EEI78919.1| metalloprotease [Corynebacterium striatum ATCC 6940] Length = 201 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AFASSDGCSSL---MLGDIV 105 E ++ D I L+ + ++ PT+V+SFP A + + MLGDIV Sbjct: 36 AECTITAVDLETIADLHVRWMDLEGPTDVMSFPMDEITPGALGTRPDAPEMGPAMLGDIV 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L E +AN G + L L +HG LHLLGYDH + M L+ +L D Sbjct: 96 LCPEFALRQANAAGHSLGHELALLTVHGCLHLLGYDHATPAEEKEMFSLQNELLAD 151 >gi|94970564|ref|YP_592612.1| hypothetical protein Acid345_3537 [Candidatus Koribacter versatilis Ellin345] gi|123381297|sp|Q1IKR2|RRMF_ACIBL RecName: Full=Probable rRNA maturation factor gi|94552614|gb|ABF42538.1| protein of unknown function UPF0054 [Candidatus Koribacter versatilis Ellin345] Length = 152 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 9/107 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ ++ T S + LN +R DK T+VLSFP A DG + GDI ++ +I A Sbjct: 32 QVQVLVTSSDELRGLNRRFRRKDKATDVLSFP---AIVDGEA----GDIAISSDIASEYA 84 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LG + L LI+HG LHL G+DH ++D ME LE + + L Sbjct: 85 YELGHSLDEELRILILHGVLHLAGHDH--ERDKGEMEALESELRDKL 129 >gi|302039360|ref|YP_003799682.1| hypothetical protein NIDE4088 [Candidatus Nitrospira defluvii] gi|300607424|emb|CBK43757.1| conserved protein of unknown function, putative Metalloprotease [Candidatus Nitrospira defluvii] Length = 156 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 LSL R+ LN +R DK T+VL+F T G S +LGD+V++ +A Sbjct: 37 LSLEIVGDVRMRRLNRTFRHRDKTTDVLAFATR--EGPGPPSSLLGDVVISLPQAIRQAR 94 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILE 160 G+ ++ L L+IHG LHL GYDH + +A M E+++L Sbjct: 95 RHGQGVDHELAVLLIHGILHLCGYDHERSEAEAQRMSRREKALLR 139 >gi|255323734|ref|ZP_05364862.1| putative metalloprotease [Corynebacterium tuberculostearicum SK141] gi|255299224|gb|EET78513.1| putative metalloprotease [Corynebacterium tuberculostearicum SK141] Length = 205 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 11/118 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDG-------CSSLMLGD 103 E ++ D IE L+ + ++ PT+V+SFP T A + G MLGD Sbjct: 36 AECTITCVDLKTIEDLHVRWMDLEGPTDVMSFPMDELTPGAIAGGGRPDAADPGPAMLGD 95 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 IVL E +A G + L L +HG LHLLGYDH + M G + +L D Sbjct: 96 IVLCPEFALRQAEAAGHSLGHELALLTVHGCLHLLGYDHSTPAEEKEMFGRQNELLAD 153 >gi|260903864|ref|ZP_05912186.1| hypothetical protein BlinB_00925 [Brevibacterium linens BL2] Length = 162 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEII 111 EL++ D+ + L+ + ++ PT+V+SFP + +GDI++ E+ Sbjct: 35 AELAVTMVDATAMAELHVTWMDLEGPTDVMSFPMDQLTQGQPGAPTEGQMGDIIICPEVA 94 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A+ G + ++ L +HGFLHLLGYDH + + M L+R +L Sbjct: 95 AAQASSSGHTTMDEVLLLTVHGFLHLLGYDHGEPAEKEEMFTLQRHLL 142 >gi|237751248|ref|ZP_04581728.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229372614|gb|EEO23005.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 200 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 10/120 (8%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA---SSDGCSSLMLGDIVLA 107 K+N+ + L+F DS ++ LN +Y D PT+VLSFP SSD LG I++ Sbjct: 75 KQNLY-IELIFVDSESMQELNKQYMAKDYPTDVLSFPLEIQDIESSDMPQC--LGSIIIN 131 Query: 108 -YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 YE+ + +A + L IH FLHLLG+DH + D +E++I+E LG+ D Sbjct: 132 IYEVCD-KAALYKHNPYAEFSLLFIHAFLHLLGFDH--ECDNGEQRAVEQAIIESLGLPD 188 >gi|324991447|gb|EGC23380.1| metalloprotease [Streptococcus sanguinis SK353] Length = 165 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL-------- 99 KEN E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 33 KEN-KEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEM 91 Query: 100 ------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M G Sbjct: 92 LEDFDAYIGELFISVDKAREQAEEFGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFG 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLT 163 >gi|311741361|ref|ZP_07715185.1| metalloprotease [Corynebacterium pseudogenitalium ATCC 33035] gi|311303531|gb|EFQ79610.1| metalloprotease [Corynebacterium pseudogenitalium ATCC 33035] Length = 205 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 11/118 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDG-------CSSLMLGD 103 E ++ D IE L+ + ++ PT+V+SFP T A + G MLGD Sbjct: 36 AECTVTCVDLKTIEDLHVRWMDLEGPTDVMSFPMDELTPGAIAGGGRPDAADPGPAMLGD 95 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 IVL E +A G + L L +HG LHLLGYDH + M G + +L D Sbjct: 96 IVLCPEFALRQAEAAGHSLGHELALLTVHGCLHLLGYDHSTPAEEKEMFGRQNELLAD 153 >gi|322387706|ref|ZP_08061315.1| metalloprotease [Streptococcus infantis ATCC 700779] gi|321141573|gb|EFX37069.1| metalloprotease [Streptococcus infantis ATCC 700779] Length = 165 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-----------FASSDGCSSLM---- 100 E+++ F + R LN E+R D+PT+V+S A + +M Sbjct: 37 EMAVTFVTNERSHELNLEFRATDRPTDVISLEYKPELEITFDEEDLAEDPDLAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 SYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|216263745|ref|ZP_03435739.1| conserved hypothetical protein [Borrelia afzelii ACA-1] gi|215979789|gb|EEC20611.1| conserved hypothetical protein [Borrelia afzelii ACA-1] Length = 152 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 14/138 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + F +V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLGIFYD--FILSVLNTLSISDF------ELSVILCDNVYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + LN ++R ++PT+VLSF + D G + + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNEVNEDLVDGINYKIQGDLIISFEYLKFSAQEFNVEIYE 109 Query: 125 HLVHLIIHGFLHLLGYDH 142 L + IHG LHL+GY H Sbjct: 110 ELQRVTIHGILHLMGYKH 127 >gi|332673960|gb|AEE70777.1| probable metalloprotease [Helicobacter pylori 83] Length = 142 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHSLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|312863688|ref|ZP_07723926.1| translation metalloprotein YbeY [Streptococcus vestibularis F0396] gi|322517153|ref|ZP_08070037.1| metalloprotease [Streptococcus vestibularis ATCC 49124] gi|311101224|gb|EFQ59429.1| translation metalloprotein YbeY [Streptococcus vestibularis F0396] gi|322124303|gb|EFX95814.1| metalloprotease [Streptococcus vestibularis ATCC 49124] Length = 145 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-----------FASSDGCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S A + + +M Sbjct: 17 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDITFDEEDLAENPELAEMMGEFD 76 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G +E + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 77 SYIGELFISIDKAREQAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 136 Query: 159 LEDLGIN 165 L G+ Sbjct: 137 LTAYGLT 143 >gi|322372541|ref|ZP_08047077.1| putative metalloprotease Str0617 [Streptococcus sp. C150] gi|321277583|gb|EFX54652.1| putative metalloprotease Str0617 [Streptococcus sp. C150] Length = 165 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-----------FASSDGCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S A + + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEVDITFDEEDLAENPELAEMMGEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G +E + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 SYIGELFISVDKAHEQAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|319946538|ref|ZP_08020773.1| metalloprotease [Streptococcus australis ATCC 700641] gi|319747284|gb|EFV99542.1| metalloprotease [Streptococcus australis ATCC 700641] Length = 165 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S +F D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEMEISFDEEDLEENPELAEMMAEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 TYIGELFISIDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|309800250|ref|ZP_07694426.1| conserved hypothetical protein [Streptococcus infantis SK1302] gi|308116103|gb|EFO53603.1| conserved hypothetical protein [Streptococcus infantis SK1302] Length = 165 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN E+R D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLEFRDTDRPTDVISLEYKPELEIAFDEEDLENDPDLADMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|222152665|ref|YP_002561840.1| putative metalloprotease [Streptococcus uberis 0140J] gi|254803968|sp|B9DRF7|RRMF_STRU0 RecName: Full=Probable rRNA maturation factor gi|222113476|emb|CAR41204.1| conserved hypothetical protein [Streptococcus uberis 0140J] Length = 166 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 26/165 (15%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E L EI +TL + FA + K E+S+ F + R LN EYR Sbjct: 8 ETGLVSQEIMEQTLDLLNFAARKTGKDEK---------EMSVTFVTNERSHELNLEYRDT 58 Query: 78 DKPTNVLSF------PTAFASSD-----GCSSLM------LGDIVLAYEIIEIEANVLGK 120 D+PT+V+S P F D + ++ +G++ ++ + + +A G Sbjct: 59 DRPTDVISLEYKPESPILFDERDLEENPDLAEMLSEFDAYIGELFISIDKAKEQAQEYGH 118 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 119 SFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLT 163 >gi|296269140|ref|YP_003651772.1| hypothetical protein Tbis_1157 [Thermobispora bispora DSM 43833] gi|296091927|gb|ADG87879.1| protein of unknown function UPF0054 [Thermobispora bispora DSM 43833] Length = 156 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSD---GCSSLMLGDIVL 106 + ELS++ D + L+ + G PT+VL+FP ++ D + +LGD+VL Sbjct: 34 LAELSILVVDEAAMAELHERWMGEPGPTDVLAFPMDELRPHSTRDEEHPPNPALLGDVVL 93 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ +A G + L L HG LHLLGYDH + ++ M GL+ +L Sbjct: 94 CPQVAAKQAAEAGHGAQEELELLCTHGILHLLGYDHAEPEEHAEMFGLQEELL 146 >gi|322389991|ref|ZP_08063530.1| metalloprotease [Streptococcus parasanguinis ATCC 903] gi|321143304|gb|EFX38743.1| metalloprotease [Streptococcus parasanguinis ATCC 903] Length = 165 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S +F D + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEMEISFDEEDLTENPELAEMMAEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 TYIGELFISIDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|72387740|ref|XP_844294.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62359446|gb|AAX79883.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70800827|gb|AAZ10735.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 205 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 67/164 (40%), Gaps = 35/164 (21%) Query: 36 FAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----T 88 FA V L + VELS+ F R+ LN E+RG+DKPT+VL+FP T Sbjct: 18 FAAGVQGLTEAVLLAERAPQAVELSIHFVTPGRMHELNLEHRGVDKPTDVLTFPGSGSGT 77 Query: 89 AFAS-------------SDGC----------SSLM--LGDIVLAYEIIEIEANVLGK--- 120 +A + C +L+ LGDI + E I + + Sbjct: 78 PYAKFLNETVLLARVEGDNACVADPSVLAERRALLQELGDIYFSVEYISMRCSCRPTHCL 137 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 F ++L + H LH LGYDH + M ER + L + Sbjct: 138 RFHDYLQAALTHALLHALGYDHATPEQWKRMTKRERFLRHRLSV 181 >gi|304439779|ref|ZP_07399677.1| metal dependent hydrolase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371766|gb|EFM25374.1| metal dependent hydrolase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 144 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 5/110 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S+ F I LN +YRG+D+ T+VLSFP D + MLGDIV+ + +A Sbjct: 39 EVSVSFVGDDEIHELNRDYRGVDRTTDVLSFPM-----DDEFTNMLGDIVININKVIEQA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + + +L +H LHL+G+DH +++D M +E ++E L I+ Sbjct: 94 KEYGHSEKREISYLTVHSSLHLMGFDHEEEEDKKEMRAVEDRVMEKLEIS 143 >gi|298245008|ref|ZP_06968814.1| protein of unknown function UPF0054 [Ktedonobacter racemifer DSM 44963] gi|297552489|gb|EFH86354.1| protein of unknown function UPF0054 [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 34/190 (17%) Query: 4 KKVNL----PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 KK N+ P ++L I +E+A I + L V + VS +S + E I+ ++L Sbjct: 27 KKRNIMHEHPLIELYITIEDAQQSAAIE-KALENVNLDEVVSQTLS-AVNIHEPIM-VTL 83 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFP---------------TAFASSDGCSSLM---- 100 + TD I +N +YR IDK T+VLSFP S G + Sbjct: 84 LVTDDEGIRDMNKQYREIDKATDVLSFPLLNEPLVQAPAEQLWPVRESEAGAQESVPDFI 143 Query: 101 --------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 LGDIV+++ +E +A L++L+ HG LHL+GYD + M Sbjct: 144 TPPETVQNLGDIVMSWPTLERQAQEAKHSTIYELLYLLSHGMLHLVGYDDHTEAGYQAMV 203 Query: 153 GLERSILEDL 162 G+++ ++ L Sbjct: 204 GIQQRVMNTL 213 >gi|148377382|ref|YP_001256258.1| hypothetical protein MAG_1150 [Mycoplasma agalactiae PG2] gi|148291428|emb|CAL58813.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2] Length = 152 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 8/133 (6%) Query: 36 FAKAVSNLISKGYFV---KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + + +SNL + YF KE V++S+V ++ +I+ LN EYR D T++LSF S Sbjct: 20 YEQILSNL--QTYFKLEDKEISVDVSIV--NNRKIKKLNKEYRQKDYATDILSFDFGDKS 75 Query: 93 -SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 L LG++V+++E +E +A G +L HG +HL+GYDH + + M Sbjct: 76 LYKSMPFLPLGELVISHEKVEEQAKEFGHSLRREYCYLYAHGLIHLMGYDHEVENERIEM 135 Query: 152 EGLERSILEDLGI 164 + +I L I Sbjct: 136 NKIVDAIFNPLNI 148 >gi|242309876|ref|ZP_04809031.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523877|gb|EEQ63743.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 150 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 5/87 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 + L+ D+ I+ LN +R D PT+VLSFP + SL+LG IV++ + ++ + Sbjct: 40 QCELLLVDNPTIQALNCSHRNKDMPTDVLSFPL-----ESEFSLLLGSIVISLDFVKSAS 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 L E+ + L IHG LHL+G+DH Sbjct: 95 AKLNHSLEDEIALLFIHGALHLIGFDH 121 >gi|225551912|ref|ZP_03772852.1| conserved hypothetical protein [Borrelia sp. SV1] gi|225370910|gb|EEH00340.1| conserved hypothetical protein [Borrelia sp. SV1] Length = 155 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 17/137 (12%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 DL + VEN + HL + F +V N +S F ELS++ D+ I+ LN Sbjct: 5 DLNLLVENIKFE---HLSVFYD--FIVSVLNTLSISDF------ELSVILCDNAYIQELN 53 Query: 72 FEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++R ++PT+VLSF + DG + + GD+V+++E ++ A E Sbjct: 54 NKFRNKNEPTDVLSFNYNEHNELNEDLVDGINCKIQGDLVISFEYLKFSAQEFNVEIYEE 113 Query: 126 LVHLIIHGFLHLLGYDH 142 L + IHG LHL+GY H Sbjct: 114 LQRVTIHGILHLMGYKH 130 >gi|325687313|gb|EGD29335.1| metalloprotease [Streptococcus sanguinis SK72] Length = 165 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL-------- 99 KEN E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 33 KEN-KEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEM 91 Query: 100 ------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M G Sbjct: 92 LDDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFG 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLT 163 >gi|125718418|ref|YP_001035551.1| metalloprotease [Streptococcus sanguinis SK36] gi|166231428|sp|A3CP96|RRMF_STRSV RecName: Full=Probable rRNA maturation factor gi|125498335|gb|ABN45001.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 165 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL-------- 99 KEN E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 33 KEN-KEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEM 91 Query: 100 ------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M G Sbjct: 92 LEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFG 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLT 163 >gi|325690750|gb|EGD32751.1| metalloprotease [Streptococcus sanguinis SK115] gi|325696182|gb|EGD38073.1| metalloprotease [Streptococcus sanguinis SK160] Length = 165 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL-------- 99 KEN E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 33 KEN-KEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEM 91 Query: 100 ------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M G Sbjct: 92 LEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFG 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLT 163 >gi|303246548|ref|ZP_07332827.1| protein of unknown function UPF0054 [Desulfovibrio fructosovorans JJ] gi|302492258|gb|EFL52133.1| protein of unknown function UPF0054 [Desulfovibrio fructosovorans JJ] Length = 149 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + LN +Y G+ PTNVLSFP + D LG++ ++ + EA + G++ HL Sbjct: 48 MARLNSDYLGLCGPTNVLSFP----ADDPDRPDYLGEMAVSRDTAAREAFLYGQDPTEHL 103 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L+ HGFLHL G+DH +M+GL + + Sbjct: 104 TRLLAHGFLHLAGFDH-----GPLMDGLTEAACQ 132 >gi|323351168|ref|ZP_08086824.1| metalloprotease [Streptococcus sanguinis VMC66] gi|322122392|gb|EFX94103.1| metalloprotease [Streptococcus sanguinis VMC66] gi|327470589|gb|EGF16045.1| metalloprotease [Streptococcus sanguinis SK330] Length = 165 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL-------- 99 KEN E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 33 KEN-KEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELVEM 91 Query: 100 ------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M G Sbjct: 92 LEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTSEEEAEMFG 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLT 163 >gi|315587050|gb|ADU41431.1| probable metalloprotease [Helicobacter pylori 35A] Length = 142 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV + R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDKTMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHSLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|298346301|ref|YP_003718988.1| metalloprotease [Mobiluncus curtisii ATCC 43063] gi|304389934|ref|ZP_07371891.1| probable metalloprotease [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654890|ref|ZP_07907795.1| metalloprotease [Mobiluncus curtisii ATCC 51333] gi|315657186|ref|ZP_07910070.1| metalloprotease [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236362|gb|ADI67494.1| metalloprotease [Mobiluncus curtisii ATCC 43063] gi|304326827|gb|EFL94068.1| probable metalloprotease [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490851|gb|EFU80471.1| metalloprotease [Mobiluncus curtisii ATCC 51333] gi|315492289|gb|EFU81896.1| metalloprotease [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 150 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 E++++F D + L+ ++ + PT+VLSFP T ++ +LGDIVL ++ Sbjct: 35 AEVNIMFVDIKTMTDLHVKWMDLPGPTDVLSFPMDELTPGREGVPSAAGVLGDIVLCPDV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L +HG LHLLG+DH + ++ M L+R +L Sbjct: 95 AAEQARDAGHAPIEEMLLLTVHGLLHLLGFDHAEPEEEKTMFTLQRKLL 143 >gi|320450010|ref|YP_004202106.1| hypothetical protein TSC_c09320 [Thermus scotoductus SA-01] gi|320150179|gb|ADW21557.1| conserved hypothetical protein [Thermus scotoductus SA-01] Length = 138 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 4/100 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++++ T RI L E+ G D+ T+VLSFP + D LGDI ++ + + +A Sbjct: 35 VTVILTGDRRIRVLKREWWGEDEATDVLSFPH-YEPGDPFVPPHLGDIWISLDTAKRQAE 93 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 G E ++ L HG HLLG+DH ++D EG R Sbjct: 94 ERGVPLEEEVLVLAAHGLWHLLGHDHQKEED---WEGFHR 130 >gi|254779710|ref|YP_003057816.1| putative metalloprotease [Helicobacter pylori B38] gi|254001622|emb|CAX29737.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 140 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELILVSDETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHRLEEEIALLFIHGVLHLLGYDHEKDK 114 >gi|33239659|ref|NP_874601.1| metal-dependent hydrolase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46577394|sp|Q7VE08|RRMF_PROMA RecName: Full=Probable rRNA maturation factor gi|33237184|gb|AAP99253.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 195 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 42 NLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGCSSL 99 NL K + L+FT+ I +N E+R D+ T+VLSFP L Sbjct: 61 NLTCPQIVRKNRFFSMGLLFTNDLSIRQMNKEWRKKDESTDVLSFPAIDEHIVLPPNQFL 120 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 LGDI+++ E +A + + L L+ HGFLHLLG+DH Sbjct: 121 ELGDIIVSVETAFKQAKIHNHSLMHELRWLVSHGFLHLLGWDH 163 >gi|317009770|gb|ADU80350.1| putative metalloprotease [Helicobacter pylori India7] Length = 140 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + RG D T+VLSFP LG +V+ + + Sbjct: 28 QIIELVLVSDETMR--EINRDLRGCDYATDVLSFPLEVVPHTP-----LGSVVINAPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHRLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|242061044|ref|XP_002451811.1| hypothetical protein SORBIDRAFT_04g008060 [Sorghum bicolor] gi|241931642|gb|EES04787.1| hypothetical protein SORBIDRAFT_04g008060 [Sorghum bicolor] Length = 457 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 69/147 (46%), Gaps = 16/147 (10%) Query: 11 LDLQIAVENALWGD-EI-----HLRTLCEVVFAKAVSNLISKGYFVKENIV--------- 55 L +QI +E AL D EI LRT A+++L Y ++ V Sbjct: 94 LSVQIGIEEALPDDPEILGIAETLRTDVGKAVKLALNDLEGSDYITRDPSVCNVNKYASI 153 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+SL+ D I LN E+R D T+VLS D L LGDIV++ E +A Sbjct: 154 EVSLLLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPELD-IPILQLGDIVISVETARRQA 212 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 G + + L++HG LHLLG+DH Sbjct: 213 EERGHTLLDEIRILMVHGLLHLLGFDH 239 >gi|218296577|ref|ZP_03497305.1| protein of unknown function UPF0054 [Thermus aquaticus Y51MC23] gi|218243119|gb|EED09651.1| protein of unknown function UPF0054 [Thermus aquaticus Y51MC23] Length = 139 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 4/100 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++++ T RI L + G D+ T+VLSFP + D LGDI ++ + +A Sbjct: 36 VTVILTGDRRIRALKRAWWGEDEATDVLSFPH-YEPGDPFVPPHLGDIWISLDTARRQAE 94 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 G E ++ L HG HLLG+DH ++D EG R Sbjct: 95 ARGAPLEEEVLVLAAHGLWHLLGHDHQKEED---WEGFHR 131 >gi|261327447|emb|CBH10422.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 205 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 67/164 (40%), Gaps = 35/164 (21%) Query: 36 FAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----T 88 FA V L + VELS+ F R+ LN E+RG+DKPT+VL+FP T Sbjct: 18 FAAGVQGLTEAVLLAERAPQAVELSIHFVTPGRMHELNLEHRGVDKPTDVLTFPGSGSGT 77 Query: 89 AFAS-------------SDGC----------SSLM--LGDIVLAYEIIEIEANVLGK--- 120 +A + C +L+ LGDI + E I + + Sbjct: 78 PYAKFLNETVLLARVEGDNACVADPSVLAERRALLQELGDIYFSVEYIWMRCSCRPTHCL 137 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 F ++L + H LH LGYDH + M ER + L + Sbjct: 138 RFHDYLQAALTHALLHALGYDHATPEQWKRMTKRERFLRHRLSV 181 >gi|225851483|ref|YP_002731717.1| hypothetical protein PERMA_1963 [Persephonella marina EX-H1] gi|254801505|sp|C0QSS1|RRMF_PERMH RecName: Full=Probable rRNA maturation factor gi|225645941|gb|ACO04127.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 153 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S+ TD I+ +N ++RG DKPT+VLSFP +LGD+V++ + + Sbjct: 36 VEISITLTDDSTIKEINRQWRGKDKPTDVLSFPID-EKPPKYRYRILGDVVISLPYAKKQ 94 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL 162 A +G + ++ L+IHG LHLLGYDH +K+A VM L+ I E++ Sbjct: 95 AEEIGLPYREEIIRLLIHGILHLLGYDHERSEKEAQVMFSLQDEIFENI 143 >gi|256828058|ref|YP_003156786.1| hypothetical protein Dbac_0243 [Desulfomicrobium baculatum DSM 4028] gi|256577234|gb|ACU88370.1| protein of unknown function UPF0054 [Desulfomicrobium baculatum DSM 4028] Length = 146 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 8/93 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +LSL D + LN +Y G PTNVLSFP D LGD+VL+ E + E Sbjct: 38 QLSLRIVDDREMAELNGQYMGCLGPTNVLSFP---GDED-----WLGDLVLSAETLVREC 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + ++ + V L+ HG LHL+G+DH + +A Sbjct: 90 RLYNQDPHEYTVRLLAHGLLHLMGHDHGPEMEA 122 >gi|49388540|dbj|BAD25662.1| haloacid dehalogenase-like hydrolase-like [Oryza sativa Japonica Group] gi|49388674|dbj|BAD25858.1| haloacid dehalogenase-like hydrolase-like [Oryza sativa Japonica Group] Length = 543 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 16/147 (10%) Query: 11 LDLQIAVENALWGDE--IHLRTLCEVVFAKAVS----NLISKGYFVKEN---------IV 55 L++QI +E AL D + + ++ AKA +L + Y ++N V Sbjct: 100 LNVQIGIEEALPDDPTILSIAEALQMDVAKAAKVAFDHLENSEYKTRDNCISDVNKYDTV 159 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S++ D I LN E+R D T+VLS D L LGDIV++ + + +A Sbjct: 160 EVSILLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGLD-IPILQLGDIVISIDTAQRQA 218 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 G + + L++HG LHLLG+DH Sbjct: 219 EERGHTLHDEIRILMVHGLLHLLGFDH 245 >gi|125538685|gb|EAY85080.1| hypothetical protein OsI_06436 [Oryza sativa Indica Group] Length = 543 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 16/147 (10%) Query: 11 LDLQIAVENALWGDE--IHLRTLCEVVFAKAVS----NLISKGYFVKEN---------IV 55 L++QI +E AL D + + ++ AKA +L + Y ++N V Sbjct: 100 LNVQIGIEEALPDDPTILSIAEALQMDVAKAAKVAFDHLENSEYKTRDNCISDVNKYDTV 159 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S++ D I LN E+R D T+VLS D L LGDIV++ + + +A Sbjct: 160 EVSILLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGLD-IPILQLGDIVISIDTAQRQA 218 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 G + + L++HG LHLLG+DH Sbjct: 219 EERGHTLHDEIRILMVHGLLHLLGFDH 245 >gi|227488408|ref|ZP_03918724.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51867] gi|227091622|gb|EEI26934.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51867] Length = 174 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDG------CSSLMLGDIVLA 107 VE+++ D IE L+ + ++ PT+V+SFP +S+ G LGDI+L Sbjct: 36 VEVTITCVDLDTIEDLHVRWLDLEGPTDVMSFPMDDISSTSGRPDAADPGPAYLGDIILC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + + +A+ G + L L +HG LHLLGYDH + M L+ IL+ Sbjct: 96 PDFAQKQADKAGHSLNHELDLLTVHGCLHLLGYDHAKPNEEQHMFALQNDILK 148 >gi|72383386|ref|YP_292741.1| hypothetical protein PMN2A_1550 [Prochlorococcus marinus str. NATL2A] gi|123620478|sp|Q46HJ0|RRMF_PROMT RecName: Full=Probable rRNA maturation factor gi|72003236|gb|AAZ59038.1| Protein of unknown function UPF0054 [Prochlorococcus marinus str. NATL2A] Length = 184 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 57/112 (50%), Gaps = 6/112 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEIIE 112 L L T+ +I LN + G K T+VLSFP T F S+ C + LGDIV++ Sbjct: 74 LGLELTNDKKILDLNHAWLGQSKATDVLSFPIIDETFFGVSNEC--IELGDIVISVPTAI 131 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A + L L HG LHLLG+DH D++ M ++ +LE GI Sbjct: 132 RQAKDNNADLFRELRWLATHGLLHLLGWDHSDEESLHKMLLIQEQLLEIRGI 183 >gi|208435054|ref|YP_002266720.1| hypothetical protein HPG27_1104 [Helicobacter pylori G27] gi|226701639|sp|B5Z8F5|RRMF_HELPG RecName: Full=Probable rRNA maturation factor gi|208432983|gb|ACI27854.1| hypothetical protein HPG27_1104 [Helicobacter pylori G27] Length = 142 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELILVSGETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHRLEEEIALLFIHGVLHLLGYDHEKDK 114 >gi|327474676|gb|EGF20081.1| metalloprotease [Streptococcus sanguinis SK408] Length = 165 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL-------- 99 KEN E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 33 KEN-KEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEM 91 Query: 100 ------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M G Sbjct: 92 LEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFG 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLT 163 >gi|297598866|ref|NP_001046349.2| Os02g0227000 [Oryza sativa Japonica Group] gi|255670736|dbj|BAF08263.2| Os02g0227000 [Oryza sativa Japonica Group] Length = 361 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 18/149 (12%) Query: 11 LDLQIAVENALWGDE----IHLRTLCEVVFAKAVS----NLISKGYFVKEN--------- 53 L++QI +E AL D I + ++ AKA +L + Y ++N Sbjct: 100 LNVQIGIEEALPDDPTILVISIAEALQMDVAKAAKVAFDHLENSEYKTRDNCISDVNKYD 159 Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 VE+S++ D I LN E+R D T+VLS D L LGDIV++ + + Sbjct: 160 TVEVSILLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGLD-IPILQLGDIVISIDTAQR 218 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +A G + + L++HG LHLLG+DH Sbjct: 219 QAEERGHTLHDEIRILMVHGLLHLLGFDH 247 >gi|297181414|gb|ADI17603.1| predicted metal-dependent hydrolase [uncultured delta proteobacterium HF0130_19C20] Length = 157 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 9/121 (7%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSF--------PTAFASSDGCSSLMLGDIVLAY 108 +S++ T+ I+ LN ++ D PT++LS+ S + + G++V++ Sbjct: 37 ISVLITNDVEIQKLNKQFLKKDYPTDILSWTYDLEEEKKAGLESKESREENIAGELVVSA 96 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDP 167 E + +A G +FE L+ L+ HG HL G+DH + +K M LE +L+D+G+N+ Sbjct: 97 ERVSKQAFENGWDFETELIRLLAHGCAHLAGWDHEESEKQERGMLDLEIQLLKDVGLNNI 156 Query: 168 Y 168 Y Sbjct: 157 Y 157 >gi|301321025|gb|ADK69668.1| metalloprotein, YbeY family [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 151 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 36 FAKAVSNLISK---GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 F K N I K YF +ELS+ F + + + +N +YR +V SFP Sbjct: 3 FWKKFCNKILKTAYNYFNFNYDIELSITFVNDLKAQQINQQYRNHSYIADVTSFPVEMTE 62 Query: 93 SD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 ++ LGD+ + + +A + + + L +HGFLHLLGYDH D D + Sbjct: 63 NEIKAIGFRELGDMFINLNEAKRKAIKYNHDLNSEMGFLFVHGFLHLLGYDHEDSNDEKI 122 Query: 151 MEGLERSILE 160 M L+ IL+ Sbjct: 123 MFDLQDQILK 132 >gi|42560996|ref|NP_975447.1| hypothetical protein MSC_0461 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|59799038|sp|Q6MTE7|RRMF_MYCMS RecName: Full=Probable rRNA maturation factor gi|42492493|emb|CAE77089.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 164 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 36 FAKAVSNLISK---GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 F K N I K YF +ELS+ F + + + +N +YR +V SFP Sbjct: 16 FWKKFCNKILKTAYNYFNFNYDIELSITFVNDLKAQQINQQYRNHSYIADVTSFPVEMTE 75 Query: 93 SD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 ++ LGD+ + + +A + + + L +HGFLHLLGYDH D D + Sbjct: 76 NEIKAIGFRELGDMFINLNEAKRKAIKYNHDLNSEMGFLFVHGFLHLLGYDHEDSNDEKI 135 Query: 151 MEGLERSILE 160 M L+ IL+ Sbjct: 136 MFDLQDQILK 145 >gi|207091765|ref|ZP_03239552.1| putative metalloprotease [Helicobacter pylori HPKX_438_AG0C1] Length = 140 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV I +N + RG D T+VLSFP + LG +V+ + + A Sbjct: 30 IELVLVSGETIREINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQTNAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 LG E + L IHG LHLLGYDH DK Sbjct: 85 KLGHRLEEEIALLFIHGVLHLLGYDHEKDK 114 >gi|203287529|ref|YP_002222544.1| hypothetical protein BRE_63 [Borrelia recurrentis A1] gi|226701633|sp|B5RQN9|RRMF_BORRA RecName: Full=Probable rRNA maturation factor gi|201084749|gb|ACH94323.1| uncharacterized conserved protein [Borrelia recurrentis A1] Length = 148 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 15 IAVENALWGDEIHLRTL-CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I E LW + + R L F +V N + +KE ELS++ ++ I+ LN E Sbjct: 2 IKEELNLWAEGVEFRHLDAYYNFILSVLNFLC----IKE--YELSVILCNNEYIQKLNGE 55 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +R +PT+VLSF F S+ + + GDIV++ E +E + E L IHG Sbjct: 56 FRQKPEPTDVLSF-NYFEGSEQINHKIQGDIVISLEYLEFSSLEFNVEMYEELQRNTIHG 114 Query: 134 FLHLLGYDH 142 LHL+GY H Sbjct: 115 ILHLIGYTH 123 >gi|293363549|ref|ZP_06610305.1| metalloprotein, YbeY family [Mycoplasma alligatoris A21JP2] gi|292552898|gb|EFF41652.1| metalloprotein, YbeY family [Mycoplasma alligatoris A21JP2] Length = 158 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 7/132 (5%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-- 93 F K ++NL K +F + V + + F ++ ++ LN+++RG D PT++LSF F S Sbjct: 26 FEKILTNL--KTFFSIDKPVMVDVCFVNNDQMRKLNWKHRGKDYPTDILSF--GFEDSLI 81 Query: 94 -DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + L LG++V++ + ++ +A + +L HG +HL+GYDH + + M Sbjct: 82 NEQLPFLHLGELVISVDKVKEQALEFNHSEKREYCYLFTHGLVHLMGYDHELENERIHMN 141 Query: 153 GLERSILEDLGI 164 + I L I Sbjct: 142 NMVEEIFSPLNI 153 >gi|291320052|ref|YP_003515310.1| hypothetical protein MAGa1210 [Mycoplasma agalactiae] gi|290752381|emb|CBH40352.1| Conserved hypothetical protein [Mycoplasma agalactiae] Length = 152 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 8/133 (6%) Query: 36 FAKAVSNLISKGYFV---KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + + +SNL + YF KE V++S+V ++ +I+ LN EYR D T++LSF S Sbjct: 20 YEQILSNL--QTYFKLEDKEISVDVSIV--NNGKIKKLNKEYRQKDYATDILSFDFGDKS 75 Query: 93 -SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 L LG++V+++E +E +A G +L HG +HL+GYDH + + M Sbjct: 76 LYKSMPFLPLGELVISHEKVEEQAKEFGHSLRREYCYLYAHGLIHLMGYDHEVENERIEM 135 Query: 152 EGLERSILEDLGI 164 + +I + L I Sbjct: 136 NKIVDAIFDPLNI 148 >gi|328946701|gb|EGG40839.1| putative metalloprotease [Streptococcus sanguinis SK1087] Length = 165 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL-------- 99 KEN E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 33 KEN-KEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEM 91 Query: 100 ------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M G Sbjct: 92 LEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFG 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLT 163 >gi|302206650|gb|ADL10992.1| Putative metalloprotease [Corynebacterium pseudotuberculosis C231] gi|308276893|gb|ADO26792.1| Putative metalloprotease [Corynebacterium pseudotuberculosis I19] Length = 196 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIVLA 107 E+++ D + L+ + ++ PT+V+SFP + +LGDI+L Sbjct: 36 AEVTISVVDVPTMSDLHVRWMDLEGPTDVMSFPMDELTPGMGRPDAGAPGPALLGDIILC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + +A G + + L L HG LHLLGYDH++ D M L+ +L D Sbjct: 96 PDFAMKQAEKAGHDLGHELALLTTHGCLHLLGYDHIEPADEQTMFSLQNELLSD 149 >gi|94271344|ref|ZP_01291941.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93450472|gb|EAT01646.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 440 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---FASSDGCSSLMLGDIVLAY 108 + ELS++ D R+ LN YRG D+PTNVL+FP A ++ +LGDIV+A Sbjct: 75 QAAAELSILLVDEQRMGQLNAHYRGQDRPTNVLAFPQADHDREAAGEAGPRLLGDIVIAP 134 Query: 109 EIIEIEANVLGKEFENHL 126 + EA LG + L Sbjct: 135 AVAAREARELGISRQRRL 152 >gi|300858949|ref|YP_003783932.1| hypothetical protein cpfrc_01532 [Corynebacterium pseudotuberculosis FRC41] gi|300686403|gb|ADK29325.1| hypothetical protein cpfrc_01532 [Corynebacterium pseudotuberculosis FRC41] gi|302331199|gb|ADL21393.1| Putative metalloprotease [Corynebacterium pseudotuberculosis 1002] Length = 196 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIVLA 107 E+++ D + L+ + ++ PT+V+SFP + +LGDI+L Sbjct: 36 AEVTISVVDVPTMSDLHVRWMDLEGPTDVMSFPMDELTPGMGRPDAGAPGPALLGDIILC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + +A G + + L L HG LHLLGYDH++ D M L+ +L D Sbjct: 96 PDFAMKQAEKAGHDLGHELALLTTHGCLHLLGYDHIEPADEQTMFSLQNELLSD 149 >gi|219109735|ref|XP_002176621.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411156|gb|EEC51084.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 192 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 30/138 (21%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI-- 113 ++SL+ D + N E RG+D+PT+VLSFP A G + + DI Y + ++ Sbjct: 51 DVSLLLVDDQEMRETNEETRGMDEPTDVLSFPFTEAIEPGVLTPPVVDIGDYYNMGDMMI 110 Query: 114 ----------------------------EANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 A + + E + L++HG LHL+GYDH+DD Sbjct: 111 DVPYVIRACQDDAKYSHSDLEDEDRGVSAAMAMVMDPEERINMLLVHGMLHLVGYDHIDD 170 Query: 146 KDACVMEGLERSILEDLG 163 D +M E IL LG Sbjct: 171 DDYQLMVAKEEEILRLLG 188 >gi|297380337|gb|ADI35224.1| conserved hypothetical protein [Helicobacter pylori v225d] Length = 140 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QTIELVLVSDETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E + L IHG LHLLGYDH DK Sbjct: 81 TNAMKLGHSLEEEIALLFIHGVLHLLGYDHEKDK 114 >gi|289178678|gb|ADC85924.1| Hypothetical metal-binding protein [Bifidobacterium animalis subsp. lactis BB-12] Length = 193 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 EL++ F D I L+ + + PT+V+SFP MLGDIV+ + + Sbjct: 48 ELTITFVDPEPIAELHERWMDLQGPTDVMSFPMDELRPGDERNEPEGMLGDIVICPWVAQ 107 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 108 QQAQAAGHSTMEEMMLLTIHGVLHLLGYDHHTREQERQMFGLQRQLL 154 >gi|311895962|dbj|BAJ28370.1| putative metallopeptidase [Kitasatospora setae KM-6054] Length = 164 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 6/112 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEII 111 ELS++ DS + L+ ++ + PT+V+SFP + +LGDIVL E+ Sbjct: 36 ELSVILYDSESMAELHVQWMDLPGPTDVMSFPMDELRPGKEGEDLPEGLLGDIVLCPEVA 95 Query: 112 EIE--ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + + A + L L +HG LH+LGYDH + + M L++ IL+D Sbjct: 96 KEQGLAAPTKHSMDEELQLLTVHGVLHVLGYDHEEPDEEREMFALQKRILDD 147 >gi|301794105|emb|CBW36511.1| conserved hypothetical protein [Streptococcus pneumoniae INV104] gi|332204970|gb|EGJ19035.1| hypothetical protein SPAR120_0938 [Streptococcus pneumoniae GA47901] Length = 165 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSD-----GCSSLM---- 100 E+++ F + R LN YR D+PT+V+S AF D + +M Sbjct: 37 EMAVTFVTNERSHELNLGYRDTDRPTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|315223062|ref|ZP_07864941.1| conserved hypothetical protein TIGR00043 [Streptococcus anginosus F0211] gi|319939222|ref|ZP_08013585.1| metal-dependent hydrolase [Streptococcus anginosus 1_2_62CV] gi|315188012|gb|EFU21748.1| conserved hypothetical protein TIGR00043 [Streptococcus anginosus F0211] gi|319811618|gb|EFW07894.1| metal-dependent hydrolase [Streptococcus anginosus 1_2_62CV] Length = 165 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLML-------- 101 E+++ F + R LN EYR D+PT+V+S A D + L Sbjct: 37 EMAVTFVTNERSHELNLEYRNTDRPTDVISLEYKPELDIAIDEEDLLENPELAEMLEDFD 96 Query: 102 ---GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISIDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|15673068|ref|NP_267242.1| putative metalloprotease [Lactococcus lactis subsp. lactis Il1403] gi|281491585|ref|YP_003353565.1| hypothetical protein LLKF_1113 [Lactococcus lactis subsp. lactis KF147] gi|29428253|sp|Q9CGL0|RRMF_LACLA RecName: Full=Probable rRNA maturation factor gi|12724042|gb|AAK05184.1|AE006341_3 hypothetical protein L94534 [Lactococcus lactis subsp. lactis Il1403] gi|281375303|gb|ADA64816.1| Hypothetical protein LLKF_1113 [Lactococcus lactis subsp. lactis KF147] gi|326406636|gb|ADZ63707.1| Putative metalloprotease [Lactococcus lactis subsp. lactis CV56] Length = 162 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 15/143 (10%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-- 94 K V +K +KE+ E+S+ F D+ R LN +YR D+PT+V+S S+ Sbjct: 20 TKEVLAFAAKKLNLKES-TEMSVTFVDNARSHELNLQYRETDRPTDVISLEYKPDESEFF 78 Query: 95 ------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +G++ ++ + +A G E L +HGFLH+ GYDH Sbjct: 79 FDEDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIEREYGWLAVHGFLHINGYDH 138 Query: 143 VDDKDACVMEGLERSILEDLGIN 165 ++ M GL+ IL G+ Sbjct: 139 YTPEEESEMFGLQEEILTAYGLT 161 >gi|183601565|ref|ZP_02962935.1| hypothetical protein BIFLAC_02897 [Bifidobacterium animalis subsp. lactis HN019] gi|219683900|ref|YP_002470283.1| metalloprotease [Bifidobacterium animalis subsp. lactis AD011] gi|241190936|ref|YP_002968330.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196342|ref|YP_002969897.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254800500|sp|B8DUM8|RRMF_BIFA0 RecName: Full=Probable rRNA maturation factor gi|183219171|gb|EDT89812.1| hypothetical protein BIFLAC_02897 [Bifidobacterium animalis subsp. lactis HN019] gi|219621550|gb|ACL29707.1| conserved hypothetical protein [Bifidobacterium animalis subsp. lactis AD011] gi|240249328|gb|ACS46268.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250896|gb|ACS47835.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793925|gb|ADG33460.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis V9] Length = 181 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIE 112 EL++ F D I L+ + + PT+V+SFP MLGDIV+ + + Sbjct: 36 ELTITFVDPEPIAELHERWMDLQGPTDVMSFPMDELRPGDERNEPEGMLGDIVICPWVAQ 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 96 QQAQAAGHSTMEEMMLLTIHGVLHLLGYDHHTREQERQMFGLQRQLL 142 >gi|224531809|ref|ZP_03672441.1| conserved hypothetical protein [Borrelia valaisiana VS116] gi|224511274|gb|EEF81680.1| conserved hypothetical protein [Borrelia valaisiana VS116] Length = 155 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 17/141 (12%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + F +V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLSVFYD--FILSVLNALSISDF------ELSVILCDNIYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNEHNELTGDLVDGINYKIQGDLIISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDH 142 L + IHG LHL+GY H Sbjct: 110 IYEELQRVTIHGILHLMGYKH 130 >gi|300788461|ref|YP_003768752.1| metalloprotease [Amycolatopsis mediterranei U32] gi|299797975|gb|ADJ48350.1| putative metalloprotease [Amycolatopsis mediterranei U32] Length = 190 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 6/112 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLMLGDIVLA 107 + ELS++ +E L+ + + PT+V++FP + + S +LGDIVL Sbjct: 34 LAELSILLVTLEVMEDLHERWMDLPGPTDVMAFPMDELDSSRRPDAPDASPALLGDIVLC 93 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + +A G + L L +HG LHLLGYDH + + M L++ IL Sbjct: 94 PAFAKDQAKTAGHALIDELHLLTVHGVLHLLGYDHAEPAEEREMFALQKRIL 145 >gi|257466092|ref|ZP_05630403.1| metal-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917249|ref|ZP_07913489.1| metal-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691124|gb|EFS27959.1| metal-binding protein [Fusobacterium gonidiaformans ATCC 25563] Length = 164 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 5/110 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIEI 113 +SL+ T + +I+ +N E+R D PT+V+SF A+ ++ LGDIV++ + + Sbjct: 52 VSLLLTGNEQIQGINREFRKKDSPTDVISF--AYHENEDFLVGPYDTLGDIVISLDRVGE 109 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A F +++ HG LH+LGYDH++++D M E IL G Sbjct: 110 QAKEYNHSFTREFYYVLTHGILHILGYDHIEEEDKKEMREREEEILGHFG 159 >gi|332358998|gb|EGJ36819.1| metalloprotease [Streptococcus sanguinis SK49] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL------------- 99 E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 37 EMAVTFVSNERSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEMLEDFD 96 Query: 100 -MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISVDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|308183263|ref|YP_003927390.1| putative metalloprotease [Helicobacter pylori PeCan4] gi|308065448|gb|ADO07340.1| putative metalloprotease [Helicobacter pylori PeCan4] Length = 140 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QTIELVLVSDETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 TNALKLGHSLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|297571542|ref|YP_003697316.1| hypothetical protein Arch_0975 [Arcanobacterium haemolyticum DSM 20595] gi|296931889|gb|ADH92697.1| protein of unknown function UPF0054 [Arcanobacterium haemolyticum DSM 20595] Length = 170 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----CSSLMLGDIVLAYEII 111 +LS+V D + L+ E+ ++ PT+V+SFP + MLGDI + ++ Sbjct: 37 DLSIVMLDEEAMSALHVEWMDLEGPTDVMSFPMDELRPTPLGVEPTPGMLGDIAICPQVA 96 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLGYDH + + M L+R +L Sbjct: 97 ARQALAAGHNTMEEILLLTTHGILHLLGYDHAEPDEKKEMFELQRRLL 144 >gi|257452112|ref|ZP_05617411.1| metal-binding protein [Fusobacterium sp. 3_1_5R] gi|317058658|ref|ZP_07923143.1| metal-binding protein [Fusobacterium sp. 3_1_5R] gi|313684334|gb|EFS21169.1| metal-binding protein [Fusobacterium sp. 3_1_5R] Length = 164 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 5/110 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIEI 113 +SL+ T + +I+ +N E+R D PT+V+SF A+ ++ LGDIV++ + + Sbjct: 52 VSLLLTGNEQIQGINREFRKKDSPTDVISF--AYHENEDFLVGPYDTLGDIVISLDRVGE 109 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A F +++ HG LH+LGYDH++++D M E IL G Sbjct: 110 QAKEYNHSFTREFYYVLTHGILHILGYDHIEEEDKKEMREREEEILGHFG 159 >gi|322391810|ref|ZP_08065275.1| metalloprotease [Streptococcus peroris ATCC 700780] gi|321145290|gb|EFX40686.1| metalloprotease [Streptococcus peroris ATCC 700780] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----------TAFASSDGCSSLM---- 100 E+++ F + R LN EYR D+PT+V+S A + + +M Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDITFEDEELAENPELAEMMSEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISIDKAHEQAEEYGHSFEREMGFLSVHGFLHINGYDHYTPEEEAEMFSLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|325263892|ref|ZP_08130625.1| putative metalloprotease [Clostridium sp. D5] gi|324030930|gb|EGB92212.1| putative metalloprotease [Clostridium sp. D5] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 16/126 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFAS----SDGC-----SS 98 E++L+ T I +N +R IDK T+VLSFP F++ S C Sbjct: 38 AEINLLLTSDEDIRDMNQMFRQIDKATDVLSFPMLEYQVPGDFSAMEEQSQDCFNPESGE 97 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LMLGDIV++ + +A G LI H LHL GYDH+++++ +ME + I Sbjct: 98 LMLGDIVISKNKVLAQAEAYGHSPRREYAFLIAHSMLHLFGYDHMEEEERLLMEQKQNDI 157 Query: 159 LEDLGI 164 LE++ I Sbjct: 158 LENIQI 163 >gi|332358727|gb|EGJ36550.1| metalloprotease [Streptococcus sanguinis SK355] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL------------- 99 E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 37 EMAVTFVSNDRSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEMLEDFD 96 Query: 100 -MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|332367329|gb|EGJ45064.1| metalloprotease [Streptococcus sanguinis SK1059] Length = 165 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL------------- 99 E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 37 EMAVTFVSNARSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEMLEDFD 96 Query: 100 -MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|317012939|gb|ADU83547.1| putative metalloprotease [Helicobacter pylori Lithuania75] Length = 142 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSGETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E + L IHG LHLLGYDH DK Sbjct: 81 ENALKLGHRLEEEIALLFIHGVLHLLGYDHEKDK 114 >gi|28493250|ref|NP_787411.1| hypothetical protein TWT283 [Tropheryma whipplei str. Twist] gi|28572638|ref|NP_789418.1| hypothetical protein TW489 [Tropheryma whipplei TW08/27] gi|46577441|sp|Q83GJ1|RRMF_TROWT RecName: Full=Probable rRNA maturation factor gi|46577442|sp|Q83HN7|RRMF_TROW8 RecName: Full=Probable rRNA maturation factor gi|28410770|emb|CAD67156.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] gi|28476291|gb|AAO44380.1| unknown [Tropheryma whipplei str. Twist] Length = 171 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEI 113 L + F + + L ++ G+++ ++VLSFP A S + +LGDIV+ E + Sbjct: 39 LGVSFITAAEMRDLKIKHFGVNEDSDVLSFPIDEIAPGSENSLVYGVLGDIVVCPETVMR 98 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +A + FE+ + L++HGFLHLLG+DH D M L+ ++ED Sbjct: 99 QA--VRHPFEHEIYLLVVHGFLHLLGFDHSDAPSKKEMFSLQAKLIEDF 145 >gi|327460959|gb|EGF07292.1| metalloprotease [Streptococcus sanguinis SK1057] Length = 165 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL------------- 99 E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 37 EMAVTFVSNARSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEMLEDFD 96 Query: 100 -MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|330893139|gb|EGH25800.1| metal-binding heat shock protein [Pseudomonas syringae pv. mori str. 301020] Length = 69 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK ++H H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 1 GKSVDSHWAHMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 53 >gi|217032555|ref|ZP_03438045.1| hypothetical protein HPB128_172g18 [Helicobacter pylori B128] gi|298735834|ref|YP_003728359.1| Predicted metal-dependent hydrolase [Helicobacter pylori B8] gi|216945760|gb|EEC24384.1| hypothetical protein HPB128_172g18 [Helicobacter pylori B128] gi|298355023|emb|CBI65895.1| Predicted metal-dependent hydrolase [Helicobacter pylori B8] Length = 140 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + R D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDETMR--EINRDLRNCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG EN + L IHG LHLLGYDH DK Sbjct: 81 ENALKLGHSLENEIALLFIHGVLHLLGYDHEKDK 114 >gi|313678249|ref|YP_004055989.1| hypothetical protein MBOVPG45_0124 [Mycoplasma bovis PG45] gi|312950195|gb|ADR24790.1| conserved hypothetical protein TIGR00043 [Mycoplasma bovis PG45] Length = 152 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 3/115 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-SDGCSSLMLGDIVLAYE 109 KE V++S+V ++ +I+ LN +YR D T++LSF S L LG++V+++E Sbjct: 36 KEISVDVSIV--NNRKIKKLNKQYRQKDYATDILSFDFGDKSLYKDMPFLPLGELVISHE 93 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +E +A G +L HG +HL+GYDH + + M + +I + L I Sbjct: 94 KVEEQAKEFGHSLRREYCYLYAHGLIHLMGYDHELEDERVAMNMMVDAIFDPLNI 148 >gi|288905824|ref|YP_003431046.1| hypothetical protein GALLO_1631 [Streptococcus gallolyticus UCN34] gi|306831913|ref|ZP_07465068.1| probable metalloprotease [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834027|ref|ZP_07467148.1| probable metalloprotease [Streptococcus bovis ATCC 700338] gi|325978859|ref|YP_004288575.1| putative metalloprotease [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732550|emb|CBI14122.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304423815|gb|EFM26960.1| probable metalloprotease [Streptococcus bovis ATCC 700338] gi|304425839|gb|EFM28956.1| probable metalloprotease [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178787|emb|CBZ48831.1| putative metalloprotease [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 165 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS----------------- 98 E+++ F + R LN EYR D+PT+V+S SS S Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPESSLSFSEEDLEENPELAEMLDEFD 96 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLK 163 >gi|325694803|gb|EGD36708.1| metalloprotease [Streptococcus sanguinis SK150] gi|332362401|gb|EGJ40201.1| metalloprotease [Streptococcus sanguinis SK1056] Length = 165 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCSSL------------- 99 E+++ F + R LN EYR D+PT+V+S P + D L Sbjct: 37 EMAVTFVSNARSHELNLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEMLEDFD 96 Query: 100 -MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ I Sbjct: 97 AYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLT 163 >gi|295396067|ref|ZP_06806250.1| probable metalloprotease [Brevibacterium mcbrellneri ATCC 49030] gi|294971008|gb|EFG46900.1| probable metalloprotease [Brevibacterium mcbrellneri ATCC 49030] Length = 159 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 52/105 (49%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VELS+ F + L+ + G+ T+V+SFP MLGDIV++ + + Sbjct: 35 VELSIRFISDDVMSELHETWMGLPGTTDVMSFPMDELKPGHDEPGMLGDIVISPTVAAEQ 94 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G + + L +HG LHLLGYDH + M L+R +L Sbjct: 95 AAAAGHSMSDEIYLLTVHGILHLLGYDHGEPDQKSEMFALQRKLL 139 >gi|326532710|dbj|BAJ89200.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 526 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 67/147 (45%), Gaps = 16/147 (10%) Query: 11 LDLQIAVENALWGDEI------HLRTLCEVVFAKAVSNLISKGYFVKE---------NIV 55 L +QI +E AL D + LRT A NL + Y ++ + V Sbjct: 91 LSVQIGIEEALPDDPLILSIAETLRTDAGKAMKLAFHNLGNSEYKTRDPCISNVDEYDSV 150 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+SL+ D I LN E+R D T+VLS L LGD+V++ E +A Sbjct: 151 EVSLLLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGLQ-IPILQLGDLVISVETARRQA 209 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 G + + L++HG LHLLG+DH Sbjct: 210 EERGHALLDEIRILMVHGLLHLLGFDH 236 >gi|320547279|ref|ZP_08041571.1| metalloprotease [Streptococcus equinus ATCC 9812] gi|320448083|gb|EFW88834.1| metalloprotease [Streptococcus equinus ATCC 9812] Length = 165 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AFASSDGCSSLML-------- 101 E+++ F + R LN EYR D+PT+V+S +F+ D + L Sbjct: 37 EMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPESDLSFSEEDLAENPELAEMLDEFD 96 Query: 102 ---GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEI 156 Query: 159 LEDLGIN 165 L G+ Sbjct: 157 LTAYGLK 163 >gi|123169874|sp|Q14NW7|RRMF_SPICI RecName: Full=Probable rRNA maturation factor gi|110004475|emb|CAK98812.1| conserved hypothetical upf0054 protein [Spiroplasma citri] Length = 158 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 4/115 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEI 110 +ELSL+ D+ LN +YR D +V++F + L LGDI + YE Sbjct: 39 LELSLIIVDAQEQLELNQKYRHKDYVADVITFALEEENKIDLFELTGLRSLGDIFICYEK 98 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A L HG LH+LGYDH D M L+R +L DL IN Sbjct: 99 ALAQAAEYNHSPRREFAFLFTHGMLHILGYDHQTPADEEKMFNLQRKVLNDLQIN 153 >gi|91202468|emb|CAJ72107.1| hypothetical protein kustd1362 [Candidatus Kuenenia stuttgartiensis] Length = 144 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 5/137 (3%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R + K + LI + + LS+V TD+ I LN + G D T+VLSF Sbjct: 8 RQKSYAIDEKRIVKLIKRVLKSENKDASLSIVVTDNKEIRRLNKAFLGHDYATDVLSFIY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 D + + G+I+++ E+ A + E + +IHG LHL+GY+ DA Sbjct: 68 -----DASENHVAGEIIVSAEMAYKVAKEHCHDAEGEIALYLIHGLLHLIGYNDKKKGDA 122 Query: 149 CVMEGLERSILEDLGIN 165 VM E+ +L LG N Sbjct: 123 KVMHRREKELLSKLGYN 139 >gi|219684794|ref|ZP_03539736.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219685335|ref|ZP_03540154.1| conserved hypothetical protein [Borrelia garinii Far04] gi|219671739|gb|EED28794.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219673108|gb|EED30128.1| conserved hypothetical protein [Borrelia garinii Far04] Length = 152 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIE 112 ELS++ D+ I+ LN ++R ++PT+VLSF + D G + + GDI++++E ++ Sbjct: 38 ELSVILCDNVYIQKLNNKFRNKNEPTDVLSFNYNELNEDLVDGINYKIQGDIIISFEYLK 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A E L + IHG LHL+G++H Sbjct: 98 FSAQEFNVEIYEELQRVTIHGILHLMGHNH 127 >gi|253701857|ref|YP_003023046.1| hypothetical protein GM21_3262 [Geobacter sp. M21] gi|251776707|gb|ACT19288.1| protein of unknown function UPF0054 [Geobacter sp. M21] Length = 132 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 2/107 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS+ I +N +Y G DK TNV+SF + +LGD+V++ + E Sbjct: 17 AELSISIVGDRAIRIINRDYLGRDKATNVISFAMQEGEFGAINPEVLGDVVISVDTAARE 76 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSIL 159 A G+ F + L++HG LH+ GYDH + +A ME ER I Sbjct: 77 AEEAGEAFLSRFYFLLMHGILHITGYDHERSGEAEAARMEAKEREIF 123 >gi|54020099|ref|YP_115737.1| hypothetical protein mhp224 [Mycoplasma hyopneumoniae 232] gi|71893510|ref|YP_278956.1| hypothetical protein MHJ_0154 [Mycoplasma hyopneumoniae J] gi|72080497|ref|YP_287555.1| hypothetical protein MHP7448_0158 [Mycoplasma hyopneumoniae 7448] gi|62901248|sp|Q601H8|RRMF_MYCH2 RecName: Full=Probable rRNA maturation factor gi|123645188|sp|Q4A8K7|RRMF_MYCH7 RecName: Full=Probable rRNA maturation factor gi|123645909|sp|Q4AAH6|RRMF_MYCHJ RecName: Full=Probable rRNA maturation factor gi|53987272|gb|AAV27473.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] gi|71851637|gb|AAZ44245.1| conserved hypothetical protein [Mycoplasma hyopneumoniae J] gi|71913621|gb|AAZ53532.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448] Length = 150 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 +F K L+ K E + L L+ + + L +++ I+ +VLSFP+ + Sbjct: 20 LFRKIFKLLVEKEQITGE--ISLDLMLITQRKAQKLAIKFKNINYIPDVLSFPSNLIIAK 77 Query: 95 GCSSL-MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 L LG+I + I +AN G E +L +H HLLG+DH D+K +M+ Sbjct: 78 KNFRLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLFVHSIYHLLGFDHQDEKTNKLMDE 137 Query: 154 LERSILEDLGIN 165 +IL +LGIN Sbjct: 138 KVENILINLGIN 149 >gi|258405852|ref|YP_003198594.1| hypothetical protein Dret_1732 [Desulfohalobium retbaense DSM 5692] gi|257798079|gb|ACV69016.1| protein of unknown function UPF0054 [Desulfohalobium retbaense DSM 5692] Length = 144 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 9/111 (8%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106 G + + L + T I LN Y G PTNVLSFP + G +VL Sbjct: 37 GNILGLSTASLDIRITTDFGIAGLNARYLGCVGPTNVLSFPNEYGG---------GSLVL 87 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + + EA + ++ H V L+ HG LHL G DH DA +E++ Sbjct: 88 NAQAVAREAWLYAQDPLEHWVRLVAHGLLHLYGLDHGPAMDAATETAVEQA 138 >gi|326333966|ref|ZP_08200196.1| putative metalloprotease [Nocardioidaceae bacterium Broad-1] gi|325948245|gb|EGD40355.1| putative metalloprotease [Nocardioidaceae bacterium Broad-1] Length = 154 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 4/113 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEI 110 +L + F D I LN Y + PT+VLSFP + LGDI++A I Sbjct: 35 ADLRIKFGDEATITELNERYFDTEGPTDVLSFPGDELLPGRLDEEPEEGDLGDIIIAPTI 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + G + L HG LHLLGYDHVD + M GL+ +L+ G Sbjct: 95 AAKQGEAAGHGTVAEIELLTTHGILHLLGYDHVDPDEHAEMFGLQAKLLKAWG 147 >gi|312601107|gb|ADQ90362.1| Putative metalloprotease [Mycoplasma hyopneumoniae 168] Length = 150 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 3/132 (2%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 +F K L+ K E + L L+ + + L +++ I+ +VLSFP+ + Sbjct: 20 LFRKIFKLLVEKEQITGE--ISLDLMLITQRKAQKLAIKFKSINYIPDVLSFPSNLIIAK 77 Query: 95 GCSSL-MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 L LG+I + I +AN G E +L +H HLLG+DH D+K +M+ Sbjct: 78 KNFRLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLFVHSIYHLLGFDHQDEKTNKLMDE 137 Query: 154 LERSILEDLGIN 165 +IL +LGIN Sbjct: 138 KVENILINLGIN 149 >gi|124024971|ref|YP_001014087.1| metal-dependent hydrolase [Prochlorococcus marinus str. NATL1A] gi|123960039|gb|ABM74822.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. NATL1A] Length = 184 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 6/112 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEIIE 112 L L T+ +I LN + G K T+VLSFP T F S+ C + LGDIV++ Sbjct: 74 LGLELTNDKKILDLNHAWLGQSKTTDVLSFPIIDETFFGVSNEC--IELGDIVISVPTAI 131 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A + L L HG LHLLG+DH D++ M ++ +L+ GI Sbjct: 132 RQAKDNNADLFRELRWLATHGLLHLLGWDHSDEESLNKMLLIQEQLLDIRGI 183 >gi|145572770|sp|A0LK95|RRMF_SYNFM RecName: Full=Probable rRNA maturation factor Length = 159 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS++ D + LN YR D T+VLSFP +LGD+V+ + + Sbjct: 36 AELSILIVDDEEMAGLNSTYRRKDTSTDVLSFPMREGEFGDVCEEVLGDVVICAPMAKRM 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + G F++ + L++HG LHL+G+DH Sbjct: 96 GELHGASFQSVMDLLLVHGILHLVGHDH 123 >gi|254819388|ref|ZP_05224389.1| putative metalloprotease [Mycobacterium intracellulare ATCC 13950] Length = 177 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 10/115 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TAFASSDGCSSLMLGDIVL 106 ELS+V D+ + L+ + + PT+V+SFP A G S MLGDIVL Sbjct: 35 AELSMVLLDTAAMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPS--MLGDIVL 92 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E +A G + L L IHG LHL+GYDH + + M L+ +LE+ Sbjct: 93 CPEFAAGQAAAAGHSLGHELALLTIHGVLHLIGYDHGEPDEEKEMFALQDRLLEE 147 >gi|108760629|ref|YP_632898.1| cupin domain-containing protein [Myxococcus xanthus DK 1622] gi|123374295|sp|Q1D375|RRMF_MYXXD RecName: Full=Probable rRNA maturation factor gi|108464509|gb|ABF89694.1| cupin domain protein [Myxococcus xanthus DK 1622] Length = 294 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 4/139 (2%) Query: 36 FAKAVSNLISKGYFVKENI--VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 FA+ ++ ++ Y V+ + VELSL D I LN +R DK T+VLSFP Sbjct: 147 FARLLTTW-ARAYLVQLELSGVELSLSLVDDRAIRRLNRTWRKKDKATDVLSFPAGDLPK 205 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 LGD+V++ + + +A G+ E+ + + HG LHLLG+DH +DA M Sbjct: 206 GTPGPRPLGDVVISLDTAKRQAKEYGRTLESEMARYLAHGLLHLLGHDHERPRDAKRMAA 265 Query: 154 LERSILEDLG-INDPYEVD 171 LE +L + G + D +VD Sbjct: 266 LEEQLLGERGMVADSLQVD 284 >gi|109947837|ref|YP_665065.1| putative metalloprotease [Helicobacter acinonychis str. Sheeba] gi|122973244|sp|Q17WB0|RRMF_HELAH RecName: Full=Probable rRNA maturation factor gi|109715058|emb|CAK00066.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 140 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 5/88 (5%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 LV ++ +N R D T+VLSFP + LG +V+ + + A L Sbjct: 32 LVLVSGEKMREINRNLRNCDYATDVLSFPL-----EAIPHTPLGSVVINMSLAQTNALKL 86 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDK 146 G EN + L IHG LHLLGYDH D+ Sbjct: 87 GHSLENEIALLFIHGMLHLLGYDHEKDQ 114 >gi|253582281|ref|ZP_04859504.1| metal-binding protein [Fusobacterium varium ATCC 27725] gi|251835820|gb|EES64358.1| metal-binding protein [Fusobacterium varium ATCC 27725] Length = 155 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 5/118 (4%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIV 105 F + V LSL+FT + I+ +N +YRG D+PT+V+SF A+ + D LGDIV Sbjct: 35 FESDRPVYLSLLFTGNEEIQVINKQYRGKDQPTDVISF--AYHETEDFDIGPYDTLGDIV 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++ E +E +A + L +++ HG LHLLGYDH+++ D M E IL G Sbjct: 93 ISMERVEEQAAEYNHSPKRELYYVLTHGLLHLLGYDHIEEDDKKEMRAREEEILGQFG 150 >gi|222622464|gb|EEE56596.1| hypothetical protein OsJ_05956 [Oryza sativa Japonica Group] Length = 549 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K + VE+S++ D I LN E+R D T+VLS D L LGDIV++ + Sbjct: 161 KYDTVEVSILLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGLD-IPILQLGDIVISIDT 219 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + +A G + + L++HG LHLLG+DH Sbjct: 220 AQRQAEERGHTLHDEIRILMVHGLLHLLGFDH 251 >gi|262282706|ref|ZP_06060474.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262261997|gb|EEY80695.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 165 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 19/128 (14%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF------------------PTAFASSDGCS 97 E+++ F + R LN EYR D+PT+V+S P D Sbjct: 37 EMAVTFVTNERSYELNLEYRDTDRPTDVISLEYKPELDIAIDEEDLLNHPELAEMLDDFD 96 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M GL+ Sbjct: 97 AY-IGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEE 155 Query: 158 ILEDLGIN 165 IL G+ Sbjct: 156 ILTAYGLT 163 >gi|188527944|ref|YP_001910631.1| putative metalloprotease [Helicobacter pylori Shi470] gi|238691942|sp|B2UUR9|RRMF_HELPS RecName: Full=Probable rRNA maturation factor gi|188144184|gb|ACD48601.1| putative metalloprotease [Helicobacter pylori Shi470] Length = 140 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QTIELVLVSDETMR--EINRDSRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 ESALKLGHRLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|195953789|ref|YP_002122079.1| protein of unknown function UPF0054 [Hydrogenobaculum sp. Y04AAS1] gi|195933401|gb|ACG58101.1| protein of unknown function UPF0054 [Hydrogenobaculum sp. Y04AAS1] Length = 144 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 10/125 (8%) Query: 24 DEIHLRTLCEVVFAKAVSNLISK------GYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 ++I+L+T ++ K + L+ K +F +N + L + T+ I+ LN YR Sbjct: 2 NKINLKTYKKLEIPKELKYLLKKRASYTLKFFGFKNSM-LDIYITNDEEIKHLNSAYRQK 60 Query: 78 DKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 DKPT+VLSF + + + LG+IV++Y+ +A G + L L++HG +HL Sbjct: 61 DKPTDVLSFNI---NENVGNVYYLGEIVISYDTALKQAIEYGVSLDQELTRLLVHGIVHL 117 Query: 138 LGYDH 142 +G+DH Sbjct: 118 MGHDH 122 >gi|221120368|ref|XP_002165737.1| PREDICTED: similar to Putative metalloprotease C21orf57 [Hydra magnipapillata] Length = 159 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM------LGDIVLAYE 109 ++ L+F +++ LN+ +R ID+ T++LSFP + ++ S M LGDI L + Sbjct: 36 DVGLLFLSKNKMRELNYAHRKIDEATDILSFPFHQSLTNADISKMNLEEKNLGDIFLCPQ 95 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +I + +V E + V L+ HG +HL GY H ++ +M E IL+ Sbjct: 96 LIRRKYDVHDFELRSVFVPLLTHGLVHLCGYAHETEEQYELMHAKELEILK 146 >gi|297822029|ref|XP_002878897.1| hypothetical protein ARALYDRAFT_901259 [Arabidopsis lyrata subsp. lyrata] gi|297324736|gb|EFH55156.1| hypothetical protein ARALYDRAFT_901259 [Arabidopsis lyrata subsp. lyrata] Length = 584 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VELS++ + I LN E+RG D T+VLS + LM+GDIV++ E + Sbjct: 164 VELSVMLCNDDFICKLNKEWRGEDHATDVLSM-SQHVPELKLPVLMMGDIVISVETAARQ 222 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A G + + L+IHG LHLLG+DH Sbjct: 223 AAERGHTLLDEIRILVIHGLLHLLGFDH 250 >gi|222056179|ref|YP_002538541.1| protein of unknown function UPF0054 [Geobacter sp. FRC-32] gi|221565468|gb|ACM21440.1| protein of unknown function UPF0054 [Geobacter sp. FRC-32] Length = 126 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+ I +N +Y DK TNV+SF + MLGD+++ + EA Sbjct: 12 ELSISIVGDRTIRRINRDYLDRDKTTNVISFAMHEGDFSEINPQMLGDVIICADTASREA 71 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSILEDL 162 F + L L++HG LH+ GYDH + +A ME ER I +L Sbjct: 72 EEGDMPFFSRLSFLLLHGILHITGYDHERSGETEAARMEFREREIFGNL 120 >gi|154174537|ref|YP_001407912.1| putative metalloprotease [Campylobacter curvus 525.92] gi|112803387|gb|EAU00731.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 135 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 16/131 (12%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 LCE + + + + + F+ +ELS F +S + +N + RG DK T+VLSFP Sbjct: 3 LCEEKYPEILDEICA---FLTPGDIELS--FVNSEEMREINLKERGFDKTTDVLSFPLEL 57 Query: 91 A--SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + GC IV+ +++ +A LG ++ L IHG LH+LG+DH +KD+ Sbjct: 58 VLHAPIGC-------IVINTDLVMQKAAQLGHTNDDETALLFIHGLLHVLGFDH--EKDS 108 Query: 149 CVMEGLERSIL 159 M E I+ Sbjct: 109 GQMREKEVQII 119 >gi|331703461|ref|YP_004400148.1| hypothetical protein MLC_4420 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384128|gb|ACU78698.1| putative metalloprotease [Mycoplasma mycoides subsp. capri str. GM12] gi|256384960|gb|ACU79529.1| putative metalloprotease [Mycoplasma mycoides subsp. capri str. GM12] gi|296456005|gb|ADH22240.1| putative metalloprotease [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802016|emb|CBW54170.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 164 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 36 FAKAVSNLISK---GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 F K N I K YF +ELS+ F + + + +N +YR +V SFP Sbjct: 16 FWKKFCNKILKTAYNYFNFNYDIELSITFVNDLKAQQINQQYRNHSYIADVTSFPVEMTE 75 Query: 93 SD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 ++ LGD+ + + +A + + + L +HGFLHLLGYDH D D + Sbjct: 76 NEIKAIGFRELGDMFINLSEAKRKAIKYNHDLNSEMGFLFVHGFLHLLGYDHEDLNDEKI 135 Query: 151 MEGLERSILE 160 M L+ IL+ Sbjct: 136 MFDLQDQILK 145 >gi|156391269|ref|XP_001635691.1| predicted protein [Nematostella vectensis] gi|156222787|gb|EDO43628.1| predicted protein [Nematostella vectensis] Length = 169 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-------SSLML 101 +K + ++S+V RI++LN +YR + T+VL+FP G L Sbjct: 29 LLKADRFDVSIVCAGGKRIKSLNLKYRRRNVQTDVLAFPYFENMKPGVLPNPKLQDDWNL 88 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 GD++L +I + K + +L LI HG HLLGY H +++ M E+ +L Sbjct: 89 GDVILGMPVIHQDCQEDNKSVQEYLPVLITHGLCHLLGYTHDTEQNLQQMHKKEKEVL 146 >gi|157150959|ref|YP_001450012.1| putative metalloprotease [Streptococcus gordonii str. Challis substr. CH1] gi|189040587|sp|A8AW52|RRMF_STRGC RecName: Full=Probable rRNA maturation factor gi|157075753|gb|ABV10436.1| conserved hypothetical protein TIGR00043 [Streptococcus gordonii str. Challis substr. CH1] Length = 165 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 26/170 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I E L +EI +T + FA + K E+++ F + R LN Sbjct: 3 IEIVDETGLVSEEIIKQTQDILEFAAQKTGKEKK---------EMAVTFVTNERSHELNL 53 Query: 73 EYRGIDKPTNVLSF---PTAFASSDGCSSL--------------MLGDIVLAYEIIEIEA 115 EYR D+PT+V+S P + D L +G++ ++ + +A Sbjct: 54 EYRDTDRPTDVISLEYKPELDIAVDEEDLLNHPELAEMLDDFDAYIGELFISVDKAREQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F+ + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 114 EEYGHSFKREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|325996428|gb|ADZ51833.1| metal-dependent hydrolase [Helicobacter pylori 2018] gi|325998017|gb|ADZ50225.1| putative metalloprotease [Helicobacter pylori 2017] Length = 141 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 7/100 (7%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106 + I+EL LV ++ R +N + R D T+VLSFP + LG +V+ Sbjct: 22 SFLAPTQIIELVLVSDETMR--EINRDLRDCDYATDVLSFPL-----EAIPHTPLGSVVI 74 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + + A LG E+ + L IHG LHLLGYDH DK Sbjct: 75 NAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|83319995|ref|YP_424481.1| hypothetical protein MCAP_0508 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535679|sp|Q2SRY2|RRMF_MYCCT RecName: Full=Probable rRNA maturation factor gi|83283881|gb|ABC01813.1| conserved hypothetical protein, TIGR00043 [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 164 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--GCSSLML 101 I+ YF +ELS+ F D + + +N +YR +V SFP ++ L Sbjct: 27 IAYNYFNFNYDIELSITFVDDLKAQQINQQYRNHSYIADVTSFPVEMTENEIKAIGFREL 86 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 GD+ + + +A + + + L +HGFLHLLGYDH + D +M L+ IL+ Sbjct: 87 GDMFINLSEAKRKAIKYNHDLNSEMGFLFVHGFLHLLGYDHENLDDEKIMFDLQDQILK 145 >gi|311031636|ref|ZP_07709726.1| putative metalloprotease [Bacillus sp. m3-13] Length = 157 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + + LD + + W D +R L ++FA A I G ELS+ F D+ Sbjct: 2 IEIDMLDETTKLTDEQWDD---IRNL--LIFA-AEKESIQPG-------AELSVTFVDND 48 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVL 118 RI+ +N EYR D+PT+V+SF D + MLGDI+++ E +A Sbjct: 49 RIQEINREYREKDRPTDVISFAMEELGEGEIEIHYDEEAPRMLGDIIISIPKAEEQAEEY 108 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + L L +HG LHLLGYDH ++ D +M ++ IL+ G+ Sbjct: 109 GHSVKRELGFLALHGLLHLLGYDHENETDEKIMFDKQKEILDAYGLT 155 >gi|217077477|ref|YP_002335195.1| hypothetical protein THA_1410 [Thermosipho africanus TCF52B] gi|226734149|sp|B7ICX7|RRMF_THEAB RecName: Full=Probable rRNA maturation factor gi|217037332|gb|ACJ75854.1| conserved hypothetical protein [Thermosipho africanus TCF52B] Length = 134 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 7/88 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 V ++LVF D IE LN +YR I+ PT+VL+F + D + +I + ++I+ Sbjct: 28 VNVNLVFIDKGEIERLNNQYRNINAPTDVLTF--VYGDDD-----LYAEIFVCEDVIKEN 80 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A FE L+ ++IH LH+ GYDH Sbjct: 81 AEKFYNTFEKELLTVLIHAALHVAGYDH 108 >gi|307637831|gb|ADN80281.1| metal-dependent hydrolase [Helicobacter pylori 908] Length = 141 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 7/100 (7%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106 + I+EL LV ++ R +N + R D T+VLSFP + LG +V+ Sbjct: 22 SFLAPTQIIELVLVSDETMR--EINRDLRDCDYATDVLSFPL-----EAIPHTPLGSVVI 74 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + + A LG E+ + L IHG LHLLGYDH DK Sbjct: 75 NAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|72161249|ref|YP_288906.1| metalloprotease [Thermobifida fusca YX] gi|123760864|sp|Q47RN4|RRMF_THEFY RecName: Full=Probable rRNA maturation factor gi|71914981|gb|AAZ54883.1| Protein of unknown function UPF0054 [Thermobifida fusca YX] Length = 155 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYE 109 + ELS++ D + L+ + PT+VLSFP A +LGD+V+ + Sbjct: 34 LAELSVLLVDEEPMADLHVRWMNEPGPTDVLSFPMDELRPGAPGRTSEPGILGDVVICPQ 93 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + +A G ++ + L HG LHLLGYDH + + M L+ +L Sbjct: 94 VAARQAERAGHSMQDEIDLLCTHGILHLLGYDHAEPDEHREMFSLQNELL 143 >gi|22537644|ref|NP_688495.1| metalloprotease [Streptococcus agalactiae 2603V/R] gi|76788021|ref|YP_330133.1| metalloprotease [Streptococcus agalactiae A909] gi|22534530|gb|AAN00368.1|AE014260_24 conserved hypothetical protein TIGR00043 [Streptococcus agalactiae 2603V/R] gi|76563078|gb|ABA45662.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae A909] Length = 161 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLML--- 101 KEN E+++ F + R LN EYR D+PT+V+S +F D + L Sbjct: 29 KEN-KEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEVDISFDEEDLAENPELAEM 87 Query: 102 --------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G++ ++ + + +A G +E + L +HGFLH+ GYDH ++ M Sbjct: 88 LEDFDSYIGELFISIDKAKEQAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEEKEMFS 147 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 148 LQEEILTAYGLK 159 >gi|25011603|ref|NP_735998.1| metalloprotease [Streptococcus agalactiae NEM316] gi|77408558|ref|ZP_00785294.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae COH1] gi|77413993|ref|ZP_00790166.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae 515] gi|54040165|sp|P67139|RRMF_STRA5 RecName: Full=Probable rRNA maturation factor gi|54042634|sp|P67138|RRMF_STRA3 RecName: Full=Probable rRNA maturation factor gi|145572758|sp|Q3K020|RRMF_STRA1 RecName: Full=Probable rRNA maturation factor gi|24413143|emb|CAD47221.1| Unknown [Streptococcus agalactiae NEM316] gi|77159973|gb|EAO71111.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae 515] gi|77172832|gb|EAO75965.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae COH1] Length = 165 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLML--- 101 KEN E+++ F + R LN EYR D+PT+V+S +F D + L Sbjct: 33 KEN-KEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEVDISFDEEDLAENPELAEM 91 Query: 102 --------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G++ ++ + + +A G +E + L +HGFLH+ GYDH ++ M Sbjct: 92 LEDFDSYIGELFISIDKAKEQAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEEKEMFS 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLK 163 >gi|257055401|ref|YP_003133233.1| putative metalloprotease [Saccharomonospora viridis DSM 43017] gi|256585273|gb|ACU96406.1| conserved hypothetical protein TIGR00043 [Saccharomonospora viridis DSM 43017] Length = 183 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 11/132 (8%) Query: 41 SNLISKGYFVKEN-----IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------A 89 ++++S F + + ELS+V +E L+ + + PT+V++FP Sbjct: 16 ASIVSAARFALDRMEVSPLAELSIVLVTLDVMEDLHERWMDLPGPTDVMAFPMDELEVGR 75 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + S +LGDIVL + +A G + L L +HG LHLLGYDH + ++ Sbjct: 76 RPDAAEPSPALLGDIVLCPAFAKDQARKAGHSLLDELHLLTVHGVLHLLGYDHAEPEEER 135 Query: 150 VMEGLERSILED 161 M L+ IL D Sbjct: 136 EMFALQNRILAD 147 >gi|221194510|ref|ZP_03567567.1| putative metalloprotease [Atopobium rimae ATCC 49626] gi|221185414|gb|EEE17804.1| putative metalloprotease [Atopobium rimae ATCC 49626] Length = 169 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 11/131 (8%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA------FASSDGC 96 ++++ V+ +V +S+V I T+N +R D T+V+S A + C Sbjct: 29 VLAQEKVVRPCMVSISVV--SDEEIRTVNRTWRNADAVTDVISLEVERPNDEDLAPGEPC 86 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LGDI+LA I+ +A + +++H LHLLGYDH++D++A ME E Sbjct: 87 E---LGDILLAPAYIKRQAATYHTTPADEFRLMLVHAMLHLLGYDHLNDEEAECMEARED 143 Query: 157 SILEDLGINDP 167 +++ + ++P Sbjct: 144 ALVAMIKTDNP 154 >gi|77405165|ref|ZP_00782263.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae H36B] gi|77411675|ref|ZP_00788014.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae CJB111] gi|77162247|gb|EAO73219.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae CJB111] gi|77176167|gb|EAO78938.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae H36B] gi|319745495|gb|EFV97799.1| metalloprotease [Streptococcus agalactiae ATCC 13813] Length = 165 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 18/132 (13%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLML--- 101 KEN E+++ F + R LN EYR D+PT+V+S +F D + L Sbjct: 33 KEN-KEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPEVDISFDEEDLTENPELAEM 91 Query: 102 --------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G++ ++ + + +A G +E + L +HGFLH+ GYDH ++ M Sbjct: 92 LEDFDSYIGELFISIDKAKEQAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEEKEMFS 151 Query: 154 LERSILEDLGIN 165 L+ IL G+ Sbjct: 152 LQEEILTAYGLK 163 >gi|203283986|ref|YP_002221726.1| hypothetical protein BDU_64 [Borrelia duttonii Ly] gi|226701634|sp|B5RKV9|RRMF_BORDL RecName: Full=Probable rRNA maturation factor gi|201083429|gb|ACH93020.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 148 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS++ ++ I+ LN E+R +PT+VLSF F S+ + + GDI+++ E +E + Sbjct: 38 ELSVILCNNEYIQKLNGEFRQKPEPTDVLSF-NYFEGSEQINHKIQGDIIISLEYLEFSS 96 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 E L IHG LHL+GY H Sbjct: 97 LEFNVEMYEELQRNTIHGILHLIGYTH 123 >gi|308063942|gb|ADO05829.1| putative metalloprotease [Helicobacter pylori Sat464] Length = 140 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QTIELVLVSDETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E + L IHG LHLLGYDH DK Sbjct: 81 ESALKLGHSLEEEIALLFIHGVLHLLGYDHEKDK 114 >gi|294155405|ref|YP_003559789.1| conserved hypothetical metalloprotease [Mycoplasma crocodyli MP145] gi|291600021|gb|ADE19517.1| conserved hypothetical metalloprotease [Mycoplasma crocodyli MP145] Length = 158 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 7/132 (5%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + + + NL+ K + +K++I ++ + F D+ +I+ LN YR D T++LSF F D Sbjct: 26 YQEILKNLV-KHFNIKKDI-QVDVTFVDNKKIKELNKSYRNKDYVTDILSFD--FGKIDF 81 Query: 96 CSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 S + LG++V++ + +E ++ + +L HG +HL+GYDH + + M Sbjct: 82 NSKIPFIHLGELVISSQKVEEQSQEFNHSLKREYCYLFAHGLIHLMGYDHELEDERIEMN 141 Query: 153 GLERSILEDLGI 164 L +I L I Sbjct: 142 KLVDTIFSPLNI 153 >gi|254423789|ref|ZP_05037507.1| conserved hypothetical protein TIGR00043, putative [Synechococcus sp. PCC 7335] gi|196191278|gb|EDX86242.1| conserved hypothetical protein TIGR00043, putative [Synechococcus sp. PCC 7335] Length = 166 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 8/110 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAYE 109 E+SL T I+ LN ++R +KPT+VLSF + + LGDI+++ E Sbjct: 53 EVSLRLTSDAEIQQLNSDFRQQEKPTDVLSFAALETEIPQLQNVYQQQPVYLGDIIVSIE 112 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A E L L HG LHLLG+DH ++ M L+R L Sbjct: 113 TASRQAVENRHSLERELAWLCAHGLLHLLGWDHPNEDRLTQM--LDRQAL 160 >gi|184200942|ref|YP_001855149.1| hypothetical protein KRH_12960 [Kocuria rhizophila DC2201] gi|183581172|dbj|BAG29643.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 168 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEII 111 E+S+ D R+ L+ ++ + T+V+SFP + + S +LGD+VL + Sbjct: 47 TEVSIAVVDEERMTQLHEQWLDLPGATDVMSFPMDELREGTPERPSLGVLGDVVLCPPVA 106 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDPYEV 170 +A G ++ L L H LHLLG+DH ++ + M +R +LE+ LG + P E Sbjct: 107 ARQAAAAGHSTQDELCLLTAHSLLHLLGHDHAEEHERARMFAAQRGLLEEFLGRDAPVET 166 >gi|152967330|ref|YP_001363114.1| metalloprotease [Kineococcus radiotolerans SRS30216] gi|189040137|sp|A6WDG1|RRMF_KINRD RecName: Full=Probable rRNA maturation factor gi|151361847|gb|ABS04850.1| protein of unknown function UPF0054 [Kineococcus radiotolerans SRS30216] Length = 173 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 4/110 (3%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--TAFASSDGCSSL--MLGDIVLAYE 109 + ELS++ D + L+ ++ PT+V+SFP +G +S +LGD+V+ + Sbjct: 38 LAELSVLMVDVEAMARLHVQWMDEPGPTDVMSFPMDQLRPGREGRTSEPGLLGDVVVCPQ 97 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + +A G + ++ L+ HG LHLLGYDH + + M L+R ++ Sbjct: 98 VAAEQAKASGHATADEVLLLVAHGILHLLGYDHAEPDEEREMFTLQRRLV 147 >gi|284044304|ref|YP_003394644.1| hypothetical protein Cwoe_2850 [Conexibacter woesei DSM 14684] gi|283948525|gb|ADB51269.1| protein of unknown function UPF0054 [Conexibacter woesei DSM 14684] Length = 138 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 19/128 (14%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + LC + F+ A I +G+ +++ F D+ I+TLN ++RG D PT+VLS Sbjct: 20 IDVEELCGLAFSSAG---IEEGH--------VAVAFVDAETIQTLNRDHRGRDAPTDVLS 68 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VD 144 FP DG L I A E+ V+ L ++HG LHL G DH VD Sbjct: 69 FPI-----DGIDGEALRQIPAAQR--ELGDVVICPPHTEDLSEAVVHGALHLTGMDHEVD 121 Query: 145 DKDACVME 152 D + ++ Sbjct: 122 DGEMLALQ 129 >gi|317014546|gb|ADU81982.1| metal-binding heat shock protein [Helicobacter pylori Gambia94/24] Length = 141 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 7/100 (7%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106 + I+EL LV ++ R +N + R D T+VLSFP + LG +V+ Sbjct: 22 NFLAPTQIIELVLVSDETMR--EINRDLRDCDYATDVLSFPL-----EAIPHTPLGSVVI 74 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + + A LG E+ + L IHG LHLLGYDH DK Sbjct: 75 NAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|325181482|emb|CCA15916.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 165 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 15/149 (10%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 L+G +HL+TL + V A K + +LS++ T ++ LN ++R D Sbjct: 13 RPLYG--LHLKTLNDQVRAMVECMNCPKYPW------DLSVILTTDQQLHRLNKQFRKQD 64 Query: 79 KPTNVLSFPT-------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 K T++LSFP+ F + LGDI ++ ++ + G + + L Sbjct: 65 KTTDILSFPSHNINQPGRFPNVRTPEDRYLGDIYISLPYVKKYCDEEGTDINEQMRVLFA 124 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILE 160 HG HL+GYDH D++ M E +L Sbjct: 125 HGICHLMGYDHETDQEHERMAKAEDYLLR 153 >gi|226492765|ref|NP_001146569.1| hypothetical protein LOC100280165 [Zea mays] gi|219887855|gb|ACL54302.1| unknown [Zea mays] Length = 313 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K + VE+S++ + + I+ LN E+R +D T++LS D LMLGDIV++ E Sbjct: 173 KYDKVEVSVLLCNDNFIQDLNKEWRDVDCATDILSMSQYIPDLD-VPILMLGDIVISVEA 231 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 E +A G + + L++ G LHLLG+ H Sbjct: 232 AERQAGEKGVTLLDEVRVLVVRGILHLLGFQH 263 >gi|258651805|ref|YP_003200961.1| hypothetical protein Namu_1577 [Nakamurella multipartita DSM 44233] gi|258555030|gb|ACV77972.1| protein of unknown function UPF0054 [Nakamurella multipartita DSM 44233] Length = 186 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 16/156 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DEI L ++ V + N ++ ELS++ D + L Sbjct: 1 MTIEVANESGVPVDEIVLVSVARYVLDRMRINPLA----------ELSILLVDVEAMTEL 50 Query: 71 NFEYRGIDKPTNVLSFP-----TAFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ PT+V+SFP TA + G +LGD+VL + +A G ++ Sbjct: 51 HVKWMDEPGPTDVMSFPMDELDTARRPDESGPGPALLGDVVLCPAVAAEQATAAGHSVQD 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L L +HG LHLLGYDH + M L+ +L+ Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPAQEREMFRLQNELLD 146 >gi|256375388|ref|YP_003099048.1| metalloprotease [Actinosynnema mirum DSM 43827] gi|255919691|gb|ACU35202.1| protein of unknown function UPF0054 [Actinosynnema mirum DSM 43827] Length = 187 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP------TAFASSDGCSSLMLGDIVLA 107 + ELS++ + + L+ + + PT+V++FP + G +LGDIVL Sbjct: 34 LAELSVLLVELDVMADLHQRWMDLPGPTDVMAFPMDELDSARRPDAAGLGPALLGDIVLC 93 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E +A G + L L +HG LHLLGYDH + + M L+ IL D Sbjct: 94 PAFAEDQAAKAGHSLMDELHLLTVHGVLHLLGYDHAEPAEEREMFTLQNRILGD 147 >gi|237756142|ref|ZP_04584714.1| putative metalloprotease [Sulfurihydrogenibium yellowstonense SS-5] gi|237691706|gb|EEP60742.1| putative metalloprotease [Sulfurihydrogenibium yellowstonense SS-5] Length = 111 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 2/67 (2%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 N VE+S+ TD+ RI +N E+RG DKPT+VLSFP + G +LGD++++ + Sbjct: 40 NNVEISITLTDNERIRKINKEWRGKDKPTDVLSFPQ--DETIGYKYRLLGDVIISLPYAK 97 Query: 113 IEANVLG 119 +A +G Sbjct: 98 AQAEEIG 104 >gi|317011357|gb|ADU85104.1| putative metalloprotease [Helicobacter pylori SouthAfrica7] Length = 140 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +VEL LV ++ R +N + R D T+VLSFP + LG +V+ + + Sbjct: 28 QVVELVLVSNETMR--GINRDLRNCDYATDVLSFPL-----EAIPHTPLGSVVINVPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH D+ Sbjct: 81 ANALKLGHSLESEIALLFIHGMLHLLGYDHEKDQ 114 >gi|30682927|ref|NP_850072.1| haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] gi|20466676|gb|AAM20655.1| unknown protein [Arabidopsis thaliana] gi|26452541|dbj|BAC43355.1| unknown protein [Arabidopsis thaliana] gi|133778884|gb|ABO38782.1| At2g25870 [Arabidopsis thaliana] gi|330252671|gb|AEC07765.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] Length = 584 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VELS++ + I LN E+RG D T+VLS + LM+GD+V++ E + Sbjct: 164 VELSVMLCNDDFICKLNKEWRGEDHATDVLSM-SQHVPELKLPVLMMGDLVISVETAARQ 222 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A G + + L+IHG LHLLG+DH Sbjct: 223 AAERGHTLLDEIRILVIHGLLHLLGFDH 250 >gi|120602327|ref|YP_966727.1| hypothetical protein Dvul_1281 [Desulfovibrio vulgaris DP4] gi|120562556|gb|ABM28300.1| protein of unknown function UPF0054 [Desulfovibrio vulgaris DP4] Length = 162 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 22/138 (15%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 A W I LR L V A + + +G+ E+ L D I +N E G Sbjct: 11 RAAWRLPIALRDLSGVFAAMQCATGL-EGF-------EVELTIADDALIAMINEEQLGCI 62 Query: 79 KPTNVLSFPT-------------AFASSDGCSSL-MLGDIVLAYEIIEIEANVLGKEFEN 124 PTN+LSFP D +SL +LG +VL+ + + EA + G+ + Sbjct: 63 GPTNILSFPAYGDPPDYPADGMECGTGQDAHTSLPLLGSLVLSVDTLRREAFLYGQPVQE 122 Query: 125 HLVHLIIHGFLHLLGYDH 142 H + L+ HG H+ GYDH Sbjct: 123 HCLRLLAHGLGHIAGYDH 140 >gi|46580292|ref|YP_011100.1| hypothetical protein DVU1883 [Desulfovibrio vulgaris str. Hildenborough] gi|62901440|sp|Q72AV7|RRMF_DESVH RecName: Full=Probable rRNA maturation factor gi|46449709|gb|AAS96359.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233726|gb|ADP86580.1| protein of unknown function UPF0054 [Desulfovibrio vulgaris RCH1] Length = 162 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 22/138 (15%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 A W I LR + V A + + +G+ E+ L D I +N E G Sbjct: 11 RAAWRLPIALRDISGVFAAMQCATGL-EGF-------EVELTIADDALIAMINEEQLGCI 62 Query: 79 KPTNVLSFPTAFASSD------GCSS--------LMLGDIVLAYEIIEIEANVLGKEFEN 124 PTN+LSFP A D C + +LG +VL+ + + EA + G+ + Sbjct: 63 GPTNILSFPAYGAPPDYPADGMECGTGQDAHTSLPLLGSLVLSVDTLRREAFLYGQPVQE 122 Query: 125 HLVHLIIHGFLHLLGYDH 142 H + L+ HG H+ GYDH Sbjct: 123 HCLRLLAHGLGHIAGYDH 140 >gi|258593723|emb|CBE70064.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 146 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 55/103 (53%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E LV I LN +YRG T+VLSFP S S +LGD+V++ E + + Sbjct: 33 AECGLVLVGDRTIARLNRQYRGKATSTDVLSFPMREGSFASLSPHLLGDVVISAETADRQ 92 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 A G+ + L L+IHG LHLLGYDH +A M+ LER Sbjct: 93 AKAAGRTLRDELTALLIHGILHLLGYDHQMPSEARRMKRLERQ 135 >gi|224418521|ref|ZP_03656527.1| putative metalloprotease [Helicobacter canadensis MIT 98-5491] gi|253826924|ref|ZP_04869809.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142048|ref|ZP_07804241.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510330|gb|EES88989.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131079|gb|EFR48696.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 152 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 5/91 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 + L+ D+ I+ LN +R DKPT+VLSFP SD S +LG IV++ + I+ + Sbjct: 40 QCELLLVDNPTIQNLNKIHRNKDKPTDVLSFP---LESD--FSPLLGSIVISLDFIKQNS 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + + L IHG LHLLG+DH D+ Sbjct: 95 EKYHHTPNDEMALLFIHGILHLLGFDHEKDR 125 >gi|94985374|ref|YP_604738.1| hypothetical protein Dgeo_1273 [Deinococcus geothermalis DSM 11300] gi|145572754|sp|Q1IYW5|RRMF_DEIGD RecName: Full=Probable rRNA maturation factor gi|94555655|gb|ABF45569.1| Predicted metal-dependent hydrolase, UPF0054 [Deinococcus geothermalis DSM 11300] Length = 155 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++V I L E+ G D PT+VLSFPT + D LGDI+++ + +A Sbjct: 35 EVTVVLVGDRTIRALKREHWGEDAPTDVLSFPT-WEPGDPFMPPHLGDIIISLDTAGRQA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 G + L HG HL+G+DH Sbjct: 94 AARGHSLTREVALLASHGLTHLVGHDH 120 >gi|183221474|ref|YP_001839470.1| hypothetical protein LEPBI_I2092 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911561|ref|YP_001963116.1| metal-dependent hydrolase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189039442|sp|B0SB32|RRMF_LEPBA RecName: Full=Probable rRNA maturation factor gi|238687827|sp|B0SSV4|RRMF_LEPBP RecName: Full=Probable rRNA maturation factor gi|167776237|gb|ABZ94538.1| Metal-dependent hydrolase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779896|gb|ABZ98194.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 154 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +ELS+ + + +N E RG T+VLSFP ++ +LG++V++ E + + Sbjct: 44 LELSIYLVNDSLMAEINEERRGKPATTDVLSFPL-YSEHPPIPVQILGEVVISMETCKKQ 102 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILE 160 A +G + L++HG LH GYDH +++DA +M +E L+ Sbjct: 103 AMEIGHGLVDEFYRLLVHGILHNFGYDHETNEEDALLMRKMEDECLD 149 >gi|125624293|ref|YP_001032776.1| putative metalloprotease [Lactococcus lactis subsp. cremoris MG1363] gi|166231388|sp|A2RL98|RRMF_LACLM RecName: Full=Probable rRNA maturation factor gi|124493101|emb|CAL98065.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071075|gb|ADJ60475.1| putative metalloprotease [Lactococcus lactis subsp. cremoris NZ9000] Length = 162 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 15/143 (10%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-- 94 K V +K +KE+ E+S+ F D+ R LN +YR D+PT+V+S S+ Sbjct: 20 TKEVLAFAAKKLDLKES-TEMSVTFVDNARSHELNLQYRETDRPTDVISLEYKPDESEFF 78 Query: 95 ------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +G++ ++ + +A G E L +HGFLH+ GYDH Sbjct: 79 FDEDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIEREYGWLAVHGFLHINGYDH 138 Query: 143 VDDKDACVMEGLERSILEDLGIN 165 ++ M L+ IL G+ Sbjct: 139 YTPEEESEMFALQEEILTAYGLT 161 >gi|332704887|ref|ZP_08424975.1| metalloprotease ybeY [Desulfovibrio africanus str. Walvis Bay] gi|332555036|gb|EGJ52080.1| metalloprotease ybeY [Desulfovibrio africanus str. Walvis Bay] Length = 157 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 12/109 (11%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------------SSLMLGDIVL 106 L D I N + G PTNVLSFP ++ LG+IVL Sbjct: 44 LHLVDDADIARRNAAFMGCVGPTNVLSFPAGSGDTEETDVADVADVFEEGQDHWLGEIVL 103 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + + +E EA + G++ HLV L+ H LHL G+DH + DA + +E Sbjct: 104 SVDTLEREAFLYGQQPREHLVRLLAHAVLHLAGHDHGEIMDALTEQAVE 152 >gi|325284047|ref|YP_004256588.1| metalloprotease ybeY [Deinococcus proteolyticus MRP] gi|324315856|gb|ADY26971.1| metalloprotease ybeY [Deinococcus proteolyticus MRP] Length = 155 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++V D I+ L E+ G D T+VLSFP A+ D LGDI+++ + +A Sbjct: 35 EVTVVLVDDDTIQALKLEHWGEDAATDVLSFP-AWEPGDPFMPPHLGDIIISLDTAARQA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 G + L HG HL+G+DH Sbjct: 94 EARGHSLTREVALLASHGMTHLVGHDH 120 >gi|84496851|ref|ZP_00995705.1| hypothetical protein JNB_04990 [Janibacter sp. HTCC2649] gi|84383619|gb|EAP99500.1| hypothetical protein JNB_04990 [Janibacter sp. HTCC2649] Length = 155 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 +L L D +ETL+ ++ + PT+V+SFP + D +LGDIVL + Sbjct: 35 ADLCLRLVDEAAMETLHVQWMDLPGPTDVMSFPMDELRPGSDDDDPEEGVLGDIVLCPSV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + +A G E L+ L HG LHLLGYDH + ++ M L+R +L Sbjct: 95 AQKQAAEAGHATEEELLLLTTHGILHLLGYDHAEPEEEREMFELQRQLL 143 >gi|72074176|ref|XP_793533.1| PREDICTED: similar to C21orf57 isoform A protein [Strongylocentrotus purpuratus] gi|115973189|ref|XP_001180108.1| PREDICTED: similar to C21orf57 isoform A protein [Strongylocentrotus purpuratus] Length = 182 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 6/111 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-----AFASSDGCSSLM-LGDIVLAYE 109 ++S++ + I +N YR D+PT+VLSFP D S L LGD+ L Sbjct: 36 DVSVICVEDKDIRQMNKIYRATDEPTDVLSFPAHENLKPGRLPDPWSDLADLGDMFLGMG 95 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 IE + + ++ L +I HG HL+GYDH + +M E ILE Sbjct: 96 YIERDCTKHNADIDDVLPVIITHGLCHLIGYDHKTQEQWKMMHDRELQILE 146 >gi|257791393|ref|YP_003181999.1| hypothetical protein Elen_1642 [Eggerthella lenta DSM 2243] gi|317490531|ref|ZP_07949009.1| hypothetical protein HMPREF1023_02709 [Eggerthella sp. 1_3_56FAA] gi|325831379|ref|ZP_08164633.1| translation metalloprotein YbeY [Eggerthella sp. HGA1] gi|257475290|gb|ACV55610.1| protein of unknown function UPF0054 [Eggerthella lenta DSM 2243] gi|316910382|gb|EFV32013.1| hypothetical protein HMPREF1023_02709 [Eggerthella sp. 1_3_56FAA] gi|325486633|gb|EGC89081.1| translation metalloprotein YbeY [Eggerthella sp. HGA1] Length = 153 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 7/113 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-------LGDIVLA 107 E+S+ F I LN YR + PT+VLSF D + + LGD+V+A Sbjct: 36 TEVSISFVTDEAIAELNERYRHKEGPTDVLSFECDGVDDDLSAMTLAEDPVYELGDVVIA 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 ++ + G FE + L++HG LHL GYDH++D +A VME E ILE Sbjct: 96 PDVASRQTREFGTTFEEEISLLLVHGLLHLCGYDHIEDDEAEVMEKREAEILE 148 >gi|218189024|gb|EEC71451.1| hypothetical protein OsI_03674 [Oryza sativa Indica Group] Length = 593 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S++ + + I+ LN E+RG D +LS D LMLGDIV++ E + Sbjct: 171 VEVSVLLCNDNFIQNLNKEWRGEDSCIEMLSMSQYIPDLD-VPILMLGDIVISVETAARQ 229 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL 162 A G + + L + G L LLG+DH D+ A ME E+ IL+ L Sbjct: 230 AEERGHTLLDEVRILAVRGILRLLGFDHQTSDESAVEMEKEEQLILKSL 278 >gi|15612152|ref|NP_223804.1| putative metalloprotease [Helicobacter pylori J99] gi|11387377|sp|Q9ZK54|RRMF_HELPJ RecName: Full=Probable rRNA maturation factor gi|4155684|gb|AAD06669.1| putative [Helicobacter pylori J99] Length = 141 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + R D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDETMR--EINRDLRDCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH DK Sbjct: 81 ENALKLGHSLEDEIALLFIHGVLHLLGYDHEKDK 114 >gi|108804346|ref|YP_644283.1| hypothetical protein Rxyl_1509 [Rubrobacter xylanophilus DSM 9941] gi|122381776|sp|Q1AVV7|RRMF_RUBXD RecName: Full=Probable rRNA maturation factor gi|108765589|gb|ABG04471.1| protein of unknown function UPF0054 [Rubrobacter xylanophilus DSM 9941] Length = 135 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 16/109 (14%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 E + ELS+ + I LN ++R D PT+VLSF DG M+G+IV+ Sbjct: 38 ERMGELSVALVEPEVIHDLNLKFRNKDAPTDVLSF-----EVDGPYGEMVGEIVICPGCA 92 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 E++ L L++HG LHL G DH ++ +A M +++ ++E Sbjct: 93 EMD-----------LEELVVHGALHLSGMDHGENFEASEMARVQKRVME 130 >gi|255322579|ref|ZP_05363724.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255300487|gb|EET79759.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 152 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 7/109 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L F D+ ++ +N RGI + T+VLSFP LG IV+ E++ +A Sbjct: 37 EVELSFVDAEEMKEINVRQRGIYETTDVLSFPLEMHLH-----APLGCIVINTELVAAKA 91 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LG ++ L HG LH+LG+DH + DA M E ++E + Sbjct: 92 AELGHSEDDETALLFTHGLLHVLGFDH--ESDAGEMRAKECEVIEKFSL 138 >gi|78777269|ref|YP_393584.1| putative metalloprotease [Sulfurimonas denitrificans DSM 1251] gi|123550289|sp|Q30RN2|RRMF_SULDN RecName: Full=Probable rRNA maturation factor gi|78497809|gb|ABB44349.1| Protein of unknown function UPF0054 [Sulfurimonas denitrificans DSM 1251] Length = 139 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L+ TD + +N +R IDK T+VLSFP LG IV+ +E ++ Sbjct: 28 EIELIVTDKDEMREINSAHRNIDKATDVLSFPYIEMPLSP-----LGSIVICSLHVEEKS 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G + L IHG LHLLGYDH + D+ M E I+++ + Sbjct: 83 KEFGHTLNDEFALLFIHGLLHLLGYDH--EVDSGEMREEEARIIKEFNL 129 >gi|239907522|ref|YP_002954263.1| hypothetical protein DMR_28860 [Desulfovibrio magneticus RS-1] gi|239797388|dbj|BAH76377.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 141 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 9/90 (10%) Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+ G+ PTN+LSFP + D LG++ L+ + + EA + G+ H+ L+ Sbjct: 52 NGEFLGLPGPTNILSFP----AEDPDRPDYLGELALSLDAVRREAFLYGQPPGLHMARLL 107 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILE 160 HGFLHL G DH +ME L + E Sbjct: 108 AHGFLHLAGLDH-----GPLMESLTETAAE 132 >gi|260910780|ref|ZP_05917432.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635102|gb|EEX53140.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 140 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 6/105 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ +F + +I +N EY G D T+V++F + D ++ GDIV++ + + A Sbjct: 36 EVGYMFVNDEKILEINNEYLGHDYYTDVITFD--YDEGD----VVNGDIVISLDTVRTNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + GK +E+ L +IIHG LHL G + + +ME E LE Sbjct: 90 EMFGKAYEDELYRVIIHGILHLCGLNDKGPGEREIMEKAENKALE 134 >gi|466970|gb|AAA17156.1| B1937_F1_21 [Mycobacterium leprae] Length = 140 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFP--------TAFASSDGCSSLMLGDIVLAYEI 110 +V D+ + L+ + + PT+V+SFP A+ G S MLGDIVL E Sbjct: 1 MVLLDTAAMADLHMRWMDLPGPTDVMSFPMDEFEPGGRPDAAEPGPS--MLGDIVLCPEF 58 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +A G + L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 59 AAQQAAAEGHSLGHELALLTIHGVLHLLGYDHGEPDEEKEMFALQGRLLEE 109 >gi|24379999|ref|NP_721954.1| putative metalloprotease [Streptococcus mutans UA159] gi|29428194|sp|Q8DSY7|RRMF_STRMU RecName: Full=Probable rRNA maturation factor gi|24377987|gb|AAN59260.1|AE014993_4 conserved hypothetical protein [Streptococcus mutans UA159] Length = 164 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFASSDGCS--------------S 98 E+++ F + R LN +YR ++PT+V+S P + S D Sbjct: 37 EMAVTFVTNERSHELNLKYRDTNRPTDVISLEYKPESSLSFDEEDLADDPDLAEVLTEFD 96 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISVDKAREQAQEYGHSFEREMGFLAVHGFLHINGYDHYTPQEEKEMFSLQEEI 156 Query: 159 LEDLGIN 165 L+ G+ Sbjct: 157 LDAYGLK 163 >gi|291401045|ref|XP_002716899.1| PREDICTED: C21orf57 isoform A protein-like [Oryctolagus cuniculus] Length = 164 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 8/114 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L +V D+ I+ +N YRG + PT+VLSFP F D LGDI L Sbjct: 36 DLGVVCVDNRSIQRINRVYRGKNAPTDVLSFPFHENLKAGEFPQPDSPDDYNLGDIFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E I + +++ + L HG HLLG+ H + + M E +L++L Sbjct: 96 EYI-FQQCKDKEDYYDALAVTATHGLCHLLGFTHSTEAEWRKMYQKEEQVLQEL 148 >gi|290580022|ref|YP_003484414.1| hypothetical protein SmuNN2025_0496 [Streptococcus mutans NN2025] gi|254996921|dbj|BAH87522.1| hypothetical protein [Streptococcus mutans NN2025] Length = 166 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------------DGCSSLM--- 100 E+++ F + R LN +YR ++PT+V+S SS D L Sbjct: 39 EMAVTFVTNERSHELNLKYRDTNRPTDVISLEYKPESSLSFDEEDLADDPDLAEVLTEFD 98 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 99 AYIGELFISVDKAREQAQEYGHSFEREMGFLAVHGFLHINGYDHYTPQEEKEMFSLQEEI 158 Query: 159 LEDLGIN 165 L+ G+ Sbjct: 159 LDAYGLK 165 >gi|2749950|gb|AAC38046.1| unknown [Streptococcus mutans] Length = 164 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------------DGCSSLM--- 100 E+++ F + R LN +YR ++PT+V+S SS D L Sbjct: 37 EMAVTFVTNERSHELNLKYRDTNRPTDVISLEYKPESSLSFDEEDLADDPDLAEVLTEFD 96 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +G++ ++ + +A G FE + L +HGFLH+ GYDH ++ M L+ I Sbjct: 97 AYIGELFISVDKAREQAQEYGHSFEREMGFLAVHGFLHINGYDHYTPQEEKEMFSLQEEI 156 Query: 159 LEDLGIN 165 L+ G+ Sbjct: 157 LDAYGLK 163 >gi|324998268|ref|ZP_08119380.1| metal-binding heat shock protein [Pseudonocardia sp. P1] Length = 181 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 7/112 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLA 107 EL++ +E L+ + PT+V++FP + DG +LGD+VL Sbjct: 35 AELAITAVALDAMEELHVRWMDEPGPTDVMAFPMDSLADDGRRPDAPDLGPALLGDVVLC 94 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G + L L +HG LHLLGYDH++ D M L+ +L Sbjct: 95 PAFARDQARKAGHTLADELHLLTVHGILHLLGYDHLEPDDEREMFALQNRLL 146 >gi|257469443|ref|ZP_05633535.1| metal-binding protein [Fusobacterium ulcerans ATCC 49185] gi|317063687|ref|ZP_07928172.1| metal-binding protein [Fusobacterium ulcerans ATCC 49185] gi|313689363|gb|EFS26198.1| metal-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 155 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 5/118 (4%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIV 105 F + V LS++FT + I+ +N +YRG D+PT+V+SF A+ + D LGDIV Sbjct: 35 FESDRPVYLSILFTGNEEIQVINKQYRGKDQPTDVISF--AYHETEDFDIGPYDTLGDIV 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 ++ E ++ +A + L +++ HG LHLLGYDH+++ D M E IL G Sbjct: 93 ISMERVDEQAAEYNHSPKRELYYVLTHGLLHLLGYDHIEEDDKKEMRAREEEILGQFG 150 >gi|308184901|ref|YP_003929034.1| putative metalloprotease [Helicobacter pylori SJM180] gi|308060821|gb|ADO02717.1| putative metalloprotease [Helicobacter pylori SJM180] Length = 140 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I+EL LV ++ R +N + R D T+VLSFP + LG +V+ + + Sbjct: 28 QIIELVLVSDETMR--EINRDLRNCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A LG E+ + L IHG LHLLGYDH D+ Sbjct: 81 ENALKLGHSLEDEIALLFIHGVLHLLGYDHEKDR 114 >gi|157164120|ref|YP_001466415.1| putative metalloprotease [Campylobacter concisus 13826] gi|166227306|sp|A7ZCA7|RRMF_CAMC1 RecName: Full=Probable rRNA maturation factor gi|112801656|gb|EAT99000.1| putative metalloprotease _0477 [Campylobacter concisus 13826] Length = 145 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L+F + + LN RGIDK T+VLSFP LG IV+ ++++ +A Sbjct: 23 EVELLFINKDEMRELNRSERGIDKTTDVLSFPLELVIHAP-----LGSIVINKDMVKEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 L + L HG LH+LGYDH D Sbjct: 78 AELNHSEDAETALLFTHGLLHILGYDHEKD 107 >gi|328953968|ref|YP_004371302.1| metalloprotease ybeY [Desulfobacca acetoxidans DSM 11109] gi|328454292|gb|AEB10121.1| metalloprotease ybeY [Desulfobacca acetoxidans DSM 11109] Length = 128 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 6/98 (6%) Query: 55 VELSLVFTDSHRIETLN---FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 ELSL F + + LN + RG TNV++ P +LGD++++ E Sbjct: 6 AELSLTFVNDPAMARLNRTIMQRRGT---TNVIALPQQGGPFPEVQPQILGDVIISLETT 62 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + +A G EF +IHG LHLLGYDH + A Sbjct: 63 QRQAWQQGWEFAELFDLYLIHGILHLLGYDHETSEAAA 100 >gi|224054065|ref|XP_002192222.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 164 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 6/113 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSS--LMLGDIVLAYE 109 ++ LV + ++ LN YR +PT+VLSFP A C LGDI L E Sbjct: 36 DVGLVCASNALMQRLNGAYRHCPEPTDVLSFPFHQVAAGELPRPCCRGEYNLGDIFLGVE 95 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 I + G+ F++ L HG HLLGY H + M E ILE+L Sbjct: 96 YIHQQCRETGENFDDVLTVTAAHGLCHLLGYRHDTKPEWEQMYQKEAQILEEL 148 >gi|145572767|sp|A2BUF9|RRMF_PROM5 RecName: Full=Probable rRNA maturation factor Length = 180 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 8/151 (5%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + E++ W + + LC + + N + + I LSL +++ I ++N ++ Sbjct: 34 LIFESSFWEEVL----LCWINIILSEKNTSFPNFIFDKKIFSLSLQIINNNEISSINQKW 89 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 PT+VLSFP + D +L LGD+ ++ E+ ++ + ++ L Sbjct: 90 MDKSGPTDVLSFPMI-SDEDTTKNLNFIELGDLFISLEMAFQQSLEFDHSIKKEMLWLAS 148 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 HGFLHLLG++H DD + M + ++ L Sbjct: 149 HGFLHLLGWEHNDDNELDNMLNFQEYLISKL 179 >gi|116511926|ref|YP_809142.1| putative metalloprotease [Lactococcus lactis subsp. cremoris SK11] gi|123125607|sp|Q02ZA2|RRMF_LACLS RecName: Full=Probable rRNA maturation factor gi|116107580|gb|ABJ72720.1| Predicted metal-dependent hydrolase [Lactococcus lactis subsp. cremoris SK11] Length = 162 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 15/143 (10%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-- 94 K V +K +KE+ E+S+ F D+ R LN +YR D+PT+V+S S+ Sbjct: 20 TKEVLAFAAKKLDLKES-TEMSVTFVDNARSHELNLQYRETDRPTDVISLEYKPDESEFF 78 Query: 95 ------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +G++ ++ + +A G E L +HGFLH+ GYDH Sbjct: 79 FDEDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIEREYGWLAVHGFLHINGYDH 138 Query: 143 VDDKDACVMEGLERSILEDLGIN 165 ++ M L+ IL G+ Sbjct: 139 YMPEEESEMFALQEEILTAYGLT 161 >gi|242054369|ref|XP_002456330.1| hypothetical protein SORBIDRAFT_03g034080 [Sorghum bicolor] gi|241928305|gb|EES01450.1| hypothetical protein SORBIDRAFT_03g034080 [Sorghum bicolor] Length = 632 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K + VE+S++ + + I+ LN E+RG ++ T++LS D LMLGDIV++ E Sbjct: 206 KYDKVEVSVLLCNGNFIQDLNKEWRGENRTTDMLSMSQYIPDLD-VPILMLGDIVISVEA 264 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +A G + + L++ G LHLLG+ H Sbjct: 265 AARQAEEKGVTLLDEVRVLVVRGILHLLGFQH 296 >gi|74001576|ref|XP_848242.1| PREDICTED: similar to UPF0054 protein C21orf57 homolog isoform 1 [Canis familiaris] Length = 164 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 8/114 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L L+ D+ ++ LN YRG D+PT+VLSFP LGDIVL Sbjct: 36 DLGLLCVDNEGMQRLNRAYRGDDRPTDVLSFPFHENVKAGELPRPRSRDDYNLGDIVLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E + + ++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 96 EYV-FQRCRGDADYYDALTVTAAHGLCHLLGFTHSTEAEWRKMYQKEKQVLEEL 148 >gi|51598321|ref|YP_072509.1| putative metalloprotease [Borrelia garinii PBi] gi|59799021|sp|Q662V4|RRMF_BORGA RecName: Full=Probable rRNA maturation factor gi|51572892|gb|AAU06917.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 152 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 14/138 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + F +V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLSVFHD--FILSVLNTLSISDF------ELSVILCDNVYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + LN ++R ++PT+VLSF + G + + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNELNEGLVGGINYKIQGDLIISFEYLKFSAQEFNVEIYE 109 Query: 125 HLVHLIIHGFLHLLGYDH 142 L + IHG LHL+G++H Sbjct: 110 ELQRVTIHGILHLMGHNH 127 >gi|57505296|ref|ZP_00371225.1| conserved hypothetical protein TIGR00043 [Campylobacter upsaliensis RM3195] gi|57016432|gb|EAL53217.1| conserved hypothetical protein TIGR00043 [Campylobacter upsaliensis RM3195] Length = 135 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+F ++ + LN ++R +K T+VLSFP + +L LG IV+ + + +A Sbjct: 22 DVELIFVENEEMRELNLKHRNKNKSTDVLSFPLQAINE----ALPLGSIVINKTLAQEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 ++ + L IH LHLLG+DH DK Sbjct: 78 KEFHHSLKDEISLLFIHAMLHLLGFDHEKDK 108 >gi|296081586|emb|CBI20591.3| unnamed protein product [Vitis vinifera] Length = 570 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VELS++ + I LN E+R D T+VLS LMLGDIV++ E + Sbjct: 150 VELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHIPELK-LPILMLGDIVISVETAARQ 208 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A G + + L++HG LHLLG+DH Sbjct: 209 AEERGHTLLDEIRILMVHGLLHLLGFDH 236 >gi|116749595|ref|YP_846282.1| hypothetical protein Sfum_2165 [Syntrophobacter fumaroxidans MPOB] gi|116698659|gb|ABK17847.1| protein of unknown function UPF0054 [Syntrophobacter fumaroxidans MPOB] Length = 122 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 46/86 (53%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S++ D + LN YR D T+VLSFP +LGD+V+ + + Sbjct: 1 MSILIVDDEEMAGLNSTYRRKDTSTDVLSFPMREGEFGDVCEEVLGDVVICAPMAKRMGE 60 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDH 142 + G F++ + L++HG LHL+G+DH Sbjct: 61 LHGASFQSVMDLLLVHGILHLVGHDH 86 >gi|50365081|ref|YP_053506.1| putative metal-dependent hydrolase [Mesoplasma florum L1] gi|59799030|sp|Q6F1K1|RRMF_MESFL RecName: Full=Probable rRNA maturation factor gi|50363637|gb|AAT75622.1| putative metal-dependent hydrolase [Mesoplasma florum L1] Length = 169 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 5/131 (3%) Query: 40 VSNLISKG--YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--G 95 +I+ G Y +N + LS+ F DS + +N EYR +V SFP + + Sbjct: 21 AKQIINSGFKYLKLKNKINLSITFLDSEPAQKINQEYRNHSYIPDVTSFPIEMSPQEIKA 80 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGL 154 +GDI + E E ++ + + L HGFLHL+GYDH ++KD M + Sbjct: 81 LGYQEIGDIFICIEEAERKSIKYDHSLKEEMGFLFTHGFLHLMGYDHETNEKDEEEMFFI 140 Query: 155 ERSILEDLGIN 165 + IL+ IN Sbjct: 141 QDEILKINKIN 151 >gi|254432649|ref|ZP_05046352.1| hypothetical protein CPCC7001_2542 [Cyanobium sp. PCC 7001] gi|197627102|gb|EDY39661.1| hypothetical protein CPCC7001_2542 [Cyanobium sp. PCC 7001] Length = 194 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 18/128 (14%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--------- 100 ++ LSL D I LN E+R PT+VL+F DG L Sbjct: 58 LQARAYSLSLSLVDDAGIAALNQEWREKPGPTDVLAFAAQDDDLDGLPPLAPGPASAGLE 117 Query: 101 ---------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 LGDIV++ + +A G E L L HG LHLLG+DH D+ M Sbjct: 118 DELEEEPLELGDIVISVDTALRQAPEHGHSLEEELRFLASHGLLHLLGWDHPDEASLATM 177 Query: 152 EGLERSIL 159 + ++L Sbjct: 178 LARQDALL 185 >gi|308177462|ref|YP_003916868.1| metalloprotease [Arthrobacter arilaitensis Re117] gi|307744925|emb|CBT75897.1| putative metalloprotease [Arthrobacter arilaitensis Re117] Length = 157 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 6/111 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSLMLGDIVLAYE 109 E+S+VF D + L+ E+ ++ PT+V+SFP A + G + + LGDIV+ Sbjct: 35 TEVSVVFIDEDAMSALHVEWMDLEGPTDVMSFPMDELRPGTAGAPGENGI-LGDIVICPS 93 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 I E +A G + ++ L HG LHL+G+DH++ + M GL+R +LE Sbjct: 94 IAEAQAKAGGHSTHDEILLLTTHGLLHLMGFDHMEPAEKEEMFGLQRQLLE 144 >gi|225429386|ref|XP_002278343.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1499 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VELS++ + I LN E+R D T+VLS LMLGDIV++ E + Sbjct: 1079 VELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHIPELK-LPILMLGDIVISVETAARQ 1137 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A G + + L++HG LHLLG+DH Sbjct: 1138 AEERGHTLLDEIRILMVHGLLHLLGFDH 1165 >gi|187250487|ref|YP_001874969.1| hydrolase family protein [Elusimicrobium minutum Pei191] gi|259645655|sp|B2KAT6|RRMF_ELUMP RecName: Full=Probable rRNA maturation factor gi|186970647|gb|ACC97632.1| Hydrolase family protein [Elusimicrobium minutum Pei191] Length = 143 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++L+F D I +N E+ D T+V+SF F G L GDI + Y++ + A Sbjct: 38 EVNLIFVDGKEIHKINKEFLNHDYKTDVISFNYPFPQKGG-EGLPFGDIFVCYDVAKENA 96 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 ++ G+ ++ +HG LHL G D K+ M+ Sbjct: 97 SLYGQGVLKEMLTYAVHGALHLAGMDDATPKERSAMD 133 >gi|221633270|ref|YP_002522495.1| hypothetical protein trd_1289 [Thermomicrobium roseum DSM 5159] gi|221155563|gb|ACM04690.1| putative conserved hypothetical protein TIGR00043 [Thermomicrobium roseum DSM 5159] Length = 165 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I L+ ++GI PT+V+SFP LGDI ++ E ++ +G + Sbjct: 51 IAELHERFQGIPGPTDVMSFPG--------EPPYLGDIAVSAETAAVQGAEVGHGVGREI 102 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 L +HGFLHL+GYD + + + M LER Sbjct: 103 AFLTVHGFLHLIGYDDLSEPERSRM--LERQ 131 >gi|150020475|ref|YP_001305829.1| hypothetical protein Tmel_0577 [Thermosipho melanesiensis BI429] gi|172048663|sp|A6LKJ3|RRMF_THEM4 RecName: Full=Probable rRNA maturation factor gi|149792996|gb|ABR30444.1| protein of unknown function UPF0054 [Thermosipho melanesiensis BI429] Length = 138 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 7/92 (7%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 V ++LVF +I+ +N E+R I+ T+VL+F + D + +I L ++IE Sbjct: 28 VNINLVFLSKEKIKKINREFRNINSETDVLTF--VYGDDD-----LFAEIYLCEDVIEEN 80 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A +E L+ ++IH LH GYDH DK Sbjct: 81 AKKFSNTYEKELLMVLIHAALHCSGYDHEYDK 112 >gi|78187213|ref|YP_375256.1| hypothetical protein Plut_1354 [Chlorobium luteolum DSM 273] gi|123582883|sp|Q3B368|RRMF_PELLD RecName: Full=Probable rRNA maturation factor gi|78167115|gb|ABB24213.1| Protein of unknown function UPF0054 [Chlorobium luteolum DSM 273] Length = 137 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L + + +AV +I + +E++ V+ S +N EY D PT+ +SFP Sbjct: 11 RKLDDALLCRAVETVIQGE---GRHALEIAAVYCGSRMSRRINREYLQHDWPTDTISFPY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 G + G+ + ++IE A +FE L + IH LHL GYD +D Sbjct: 68 ------GSGGNVEGEFYICLDVIEENARRFNTDFERELFRVTIHSVLHLAGYDDHLPEDR 121 Query: 149 CVMEGLERSILEDL 162 M E S L+ L Sbjct: 122 RRMTEREDSYLQQL 135 >gi|119716145|ref|YP_923110.1| putative metalloprotease [Nocardioides sp. JS614] gi|166227491|sp|A1SHY8|RRMF_NOCSJ RecName: Full=Probable rRNA maturation factor gi|119536806|gb|ABL81423.1| protein of unknown function UPF0054 [Nocardioides sp. JS614] Length = 149 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 11/130 (8%) Query: 40 VSNLISKGYFVKEN-----IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TA 89 V L + FV + + EL + D I LN ++ PT+VL+FP Sbjct: 15 VKRLAALSRFVMDRMRVHPLAELCIKAVDEPTIAQLNEQWMEKAGPTDVLAFPMDELRPG 74 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 D + LGD+VL ++ + G E + L +HG LHLLGYDH + ++ Sbjct: 75 LVDEDPEEGV-LGDLVLCPDVAARQGETAGHGTEAEIELLTVHGILHLLGYDHAEPEEHR 133 Query: 150 VMEGLERSIL 159 M GL+ +L Sbjct: 134 EMFGLQDELL 143 >gi|87300846|ref|ZP_01083688.1| hypothetical protein WH5701_05340 [Synechococcus sp. WH 5701] gi|87284717|gb|EAQ76669.1| hypothetical protein WH5701_05340 [Synechococcus sp. WH 5701] Length = 202 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 19/115 (16%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---------------PTAFAS-- 92 ++ L L + LN +R PT+VL+F P AS Sbjct: 58 LRAPAYSLGLSLVGDGEMAELNESWRSQQGPTDVLAFAAQDEGLEGAPAMPKPPELASDQ 117 Query: 93 --SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 + L LGDIV++ E +A G L L HG LHLLG+DH DD Sbjct: 118 ELPEQGEPLELGDIVISLETAARQAEAAGVSLARELRWLASHGLLHLLGWDHPDD 172 >gi|222823735|ref|YP_002575309.1| conserved hypothetical protein (UPF0054 domain protein) [Campylobacter lari RM2100] gi|222538957|gb|ACM64058.1| conserved hypothetical protein (UPF0054 domain protein) [Campylobacter lari RM2100] Length = 137 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV D + +N RG+DK T+VLSFP C +L LG IV+ + + +A Sbjct: 25 IELVLVDEKIMHEINLNQRGVDKTTDVLSFPLV----QNCENL-LGSIVINLDEVSKKAM 79 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 E + L IH LHL GYDH D+ Sbjct: 80 EYKHSNEEEMALLFIHAMLHLQGYDHEVDQ 109 >gi|123965446|ref|YP_001010527.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9515] gi|123199812|gb|ABM71420.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9515] Length = 135 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 4/135 (2%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 +C + + N + + I LSL +++ I ++N ++ PT+VLSFP Sbjct: 1 MCWINIILSEKNTSFPNFIFDKKIFSLSLQIINNNEISSINQKWMDKSGPTDVLSFP-MI 59 Query: 91 ASSDGCSSLM---LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + D +L LGD+ ++ E+ ++ + ++ L HGFLHLLG++H DD + Sbjct: 60 SDEDTTKNLNFIELGDLFISLEMAFQQSLEFDHSIKKEMLWLASHGFLHLLGWEHNDDNE 119 Query: 148 ACVMEGLERSILEDL 162 M + ++ L Sbjct: 120 LDNMLNFQEYLISKL 134 >gi|15807086|ref|NP_295815.1| hypothetical protein DR_2092 [Deinococcus radiodurans R1] gi|6459888|gb|AAF11642.1|AE002045_2 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 175 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++V I L E+ G D T+VLSFPT + D LGDI+++ + + +A Sbjct: 55 EVTVVLVGDPEIRALKLEHWGEDAATDVLSFPT-WEPGDPFMPPHLGDIIISLDTAQRQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 G + L HG HL+G+DH Sbjct: 114 ESRGHSLTREVALLASHGLTHLVGHDH 140 >gi|229820243|ref|YP_002881769.1| protein of unknown function UPF0054 [Beutenbergia cavernae DSM 12333] gi|259646478|sp|C5C494|RRMF_BEUC1 RecName: Full=Probable rRNA maturation factor gi|229566156|gb|ACQ80007.1| protein of unknown function UPF0054 [Beutenbergia cavernae DSM 12333] Length = 150 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSL-MLGDIVLAYEI 110 ELS++F D + L+ + PT+VLSFP D S +LGD+VL E+ Sbjct: 35 AELSILFVDIPAMSDLHERWMDEPGPTDVLSFPMDELRPGRDDAPSGPGVLGDVVLCPEV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G E L+ L HG LHLLG+DH + + M L+R +L Sbjct: 95 AAEQARTAGHSTEEELLLLTTHGILHLLGFDHAEPDEEREMFDLQRKLL 143 >gi|303237783|ref|ZP_07324341.1| translation metalloprotein YbeY [Prevotella disiens FB035-09AN] gi|302482008|gb|EFL45045.1| translation metalloprotein YbeY [Prevotella disiens FB035-09AN] Length = 142 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 16/111 (14%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEI 110 + + E+ +F D +I +N EY G D T+V++F D C L GDIV++ + Sbjct: 32 KKVGEIGYMFVDDEKILEVNNEYLGHDYYTDVITF-------DYCEENELNGDIVISLDT 84 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + A GK +E L +IIHG LHL G ++DK ER I+E+ Sbjct: 85 VRTNAEKFGKTYEEELYRVIIHGILHLCG---INDKGPG-----EREIMEE 127 >gi|47086839|ref|NP_997759.1| rRNA maturation factor homolog [Danio rerio] gi|326681334|ref|XP_003201790.1| PREDICTED: rRNA maturation factor homolog [Danio rerio] gi|45709063|gb|AAH67584.1| Zgc:85702 [Danio rerio] Length = 163 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CS----SLMLGDIVLAY 108 ++ ++ D+ +I+ +N YR ++PT+VLSFP G C+ LGDI L Sbjct: 36 DMGIICVDNRKIQRINHTYRRRNQPTDVLSFPFYEDLRPGKVPCALQRDEYNLGDIFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E + + ++ L + HG HLLGY H +++ M+ E IL + Sbjct: 96 EYVMQQCKETKQDLHQTLTVVTAHGICHLLGYRHETEEEWNEMQQKESYILSEF 149 >gi|300727523|ref|ZP_07060914.1| conserved hypothetical protein [Prevotella bryantii B14] gi|299775226|gb|EFI71827.1| conserved hypothetical protein [Prevotella bryantii B14] Length = 145 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + ++ +F D RI N +Y G D T+V++F + +++ GDIV++ + I Sbjct: 32 KKVGDIGYMFVDDERILECNRQYLGHDYYTDVITFD--YDDDYEEENIIGGDIVISLDTI 89 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A GK +E+ L +IIHG LHL G + + +ME E L+ Sbjct: 90 RTNAEKFGKTYEDELYRVIIHGILHLCGINDKGPGEREIMEAHEDKALK 138 >gi|313665395|ref|YP_004047266.1| metalloprotein, YbeY family [Mycoplasma leachii PG50] gi|312950006|gb|ADR24602.1| metalloprotein, YbeY family [Mycoplasma leachii PG50] Length = 164 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 5/130 (3%) Query: 36 FAKAVSNLISKG---YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 F K +N I K YF +ELS+ F D + + +N +YR +V SF Sbjct: 16 FWKKFANKILKTAYEYFNFNYDIELSITFVDDLKAQQINQKYRNHSYIADVTSFSVEMTD 75 Query: 93 SD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + LGD+ + + +A + + + L +HGFLHLLGYDH D D + Sbjct: 76 QEIKAIGFRELGDMFINLSEAKRKAIKYEHDLNSEMGFLFVHGFLHLLGYDHEDLDDEKI 135 Query: 151 MEGLERSILE 160 M L+ IL+ Sbjct: 136 MFDLQDQILK 145 >gi|145559542|sp|Q9RSN2|RRMF_DEIRA RecName: Full=Probable rRNA maturation factor Length = 155 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++V I L E+ G D T+VLSFPT + D LGDI+++ + + +A Sbjct: 35 EVTVVLVGDPEIRALKLEHWGEDAATDVLSFPT-WEPGDPFMPPHLGDIIISLDTAQRQA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 G + L HG HL+G+DH Sbjct: 94 ESRGHSLTREVALLASHGLTHLVGHDH 120 >gi|206895766|ref|YP_002246845.1| putative metalloprotease [Coprothermobacter proteolyticus DSM 5265] gi|206738383|gb|ACI17461.1| putative metalloprotease [Coprothermobacter proteolyticus DSM 5265] Length = 148 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 8/108 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++S+ F + I LN +YR ++PT+VLSF + +G LG+I++ + +A Sbjct: 35 DVSVYFCNERTIIDLNTQYRFNEEPTDVLSF-----TGEGD---FLGEIIICVPVALRQA 86 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 G +++ LI+H FLHLLGYD ++ M ++ +L++LG Sbjct: 87 EESGVDWQVEFAMLIVHSFLHLLGYDDETEEGFAEMVEVQNKLLKELG 134 >gi|295105853|emb|CBL03396.1| conserved hypothetical protein TIGR00043 [Gordonibacter pamelaeae 7-10-1-b] Length = 155 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 7/113 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-------LGDIVLA 107 E+S+ F I LN YR + PT+VLSF + D + + LGD+++A Sbjct: 36 TEVSVSFVTDEAIAELNERYRHKEGPTDVLSFECDGVNDDLSAMTLAEDPVYELGDVIIA 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 ++ + G FE + L++HG LHL GYDH+ D +A VME E ILE Sbjct: 96 PDVAARQTREFGTSFEEEISLLLVHGLLHLCGYDHIADDEAEVMEKREAEILE 148 >gi|296140455|ref|YP_003647698.1| hypothetical protein Tpau_2761 [Tsukamurella paurometabola DSM 20162] gi|296028589|gb|ADG79359.1| protein of unknown function UPF0054 [Tsukamurella paurometabola DSM 20162] Length = 179 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 6/111 (5%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM------LGDIVLAY 108 EL+++ D + L+ ++ + PT+V+SFP + G ++ LGDIVL Sbjct: 35 AELNMLAVDLDTMADLHVKWMDLPGPTDVMSFPMDELTPGGRPDMVDAGPATLGDIVLCP 94 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + +A G + L L +HG LHLLG+DH + ++ M GL+ SIL Sbjct: 95 QFAAEQAEAAGHSTAHELNVLTVHGVLHLLGFDHAEPEEEREMFGLQDSIL 145 >gi|315639262|ref|ZP_07894424.1| metalloprotease [Campylobacter upsaliensis JV21] gi|315480588|gb|EFU71230.1| metalloprotease [Campylobacter upsaliensis JV21] Length = 135 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+F ++ + LN ++R +K T+VLSFP + +L LG IV+ + + +A Sbjct: 22 DVELIFVENEEMRELNLKHRNKNKSTDVLSFPLQAINE----ALPLGSIVINKTLAQEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 ++ + L IH LHLLG+DH D+ Sbjct: 78 KEFHHSLKDEISLLFIHAMLHLLGFDHEKDR 108 >gi|256372050|ref|YP_003109874.1| protein of unknown function UPF0054 [Acidimicrobium ferrooxidans DSM 10331] gi|256008634|gb|ACU54201.1| protein of unknown function UPF0054 [Acidimicrobium ferrooxidans DSM 10331] Length = 181 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 23/112 (20%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---------SLMLGD 103 + ELS+VF D+ I +LN YRG PT+VLSF D +LGD Sbjct: 42 GVSELSVVFVDAETIASLNARYRGRVGPTDVLSFAIDDVGDDASEHRPSTASGLPTLLGD 101 Query: 104 IVLAYEIIEIEA----------NVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 +V+ E+ A +G E + L+IHG LH+ G+DH D Sbjct: 102 VVICPEVARTNAPEHRGDRGHDGSVGDE----VALLLIHGILHIRGWDHEAD 149 >gi|317051561|ref|YP_004112677.1| hypothetical protein Selin_1386 [Desulfurispirillum indicum S5] gi|316946645|gb|ADU66121.1| protein of unknown function UPF0054 [Desulfurispirillum indicum S5] Length = 152 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%) Query: 67 IETLNFEYRGIDKPTNVLSFP---TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 ++ +N +YR D T+VLSF + S + ++GD+ L ++I A G FE Sbjct: 48 MQQMNAQYRSRDYATDVLSFQYYESTELSGNTDPDEVIGDMALCLDVIRENAVSRGVSFE 107 Query: 124 NHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILE 160 L +IIHG LH+ GYDH + ++ A M+ E +L+ Sbjct: 108 EELSFMIIHGILHVCGYDHEISEEHAQQMQQQELRLLD 145 >gi|282878864|ref|ZP_06287631.1| metalloprotein, YbeY/ UPF0054family [Prevotella buccalis ATCC 35310] gi|281299072|gb|EFA91474.1| metalloprotein, YbeY/ UPF0054family [Prevotella buccalis ATCC 35310] Length = 141 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 I E+ +F D +I +N EY G D T++++F + D ++ GDIV++ + + Sbjct: 33 KIGEVGYMFVDDEKILEVNNEYLGHDYYTDIITFD--YDEGD----IINGDIVISLDTVR 86 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A GK +E L +IIHG LHL G + + +ME E L Sbjct: 87 TNAERFGKPYEEELYRVIIHGILHLCGINDKGPGEREIMEAAEDKAL 133 >gi|117927998|ref|YP_872549.1| putative metalloprotease [Acidothermus cellulolyticus 11B] gi|145558839|sp|A0LT03|RRMF_ACIC1 RecName: Full=Probable rRNA maturation factor gi|117648461|gb|ABK52563.1| protein of unknown function UPF0054 [Acidothermus cellulolyticus 11B] Length = 164 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 8/114 (7%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--------DGCSSLMLGDIV 105 + ELS++ D + L+ + PT+VLSFP +LGD+V Sbjct: 34 LAELSILLVDEGEMAVLHERWMDEPGPTDVLSFPMDELRPGRLDVEIDPDAEPAVLGDVV 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L + + +A G ++ L L +HG LHLLGYDH ++ M L+ +L Sbjct: 94 LCPAVAKQQARHAGHSTQDELELLTVHGILHLLGYDHAEEDAEREMFALQSELL 147 >gi|57899484|dbj|BAD86945.1| haloacid dehalogenase-like hydrolase-like [Oryza sativa Japonica Group] Length = 593 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S++ + + I+ LN E+RG D +LS D LMLGDIV++ E + Sbjct: 171 VEVSVLLCNDNFIQNLNKEWRGEDSCIEMLSMSQYIPDLD-VPILMLGDIVISVETAARQ 229 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV-MEGLERSILEDL 162 A G + + L + G L LLG+DH ++ V ME E+ IL+ L Sbjct: 230 AEERGHTLLDEVRILAVRGILRLLGFDHQTSHESAVEMEKEEQLILKSL 278 >gi|226227119|ref|YP_002761225.1| hypothetical protein GAU_1713 [Gemmatimonas aurantiaca T-27] gi|226090310|dbj|BAH38755.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 167 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 LS+ F S + TLN ++ G PT+V++F A + ++GDI + ++ +A Sbjct: 56 LSITFVTSRAMATLNRQHLGHTGPTDVITF----ALGNAPDGTVIGDIYICPDVARRQAR 111 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 G L L++HG LH G++H +D Sbjct: 112 EHGVGIREELARLVVHGTLHASGWEHPED 140 >gi|125571963|gb|EAZ13478.1| hypothetical protein OsJ_03394 [Oryza sativa Japonica Group] Length = 425 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 2/109 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S++ + + I+ LN E+RG D +LS D LMLGDIV++ E + Sbjct: 31 VEVSVLLCNDNFIQNLNKEWRGEDSCIEMLSMSQYIPDLD-VPILMLGDIVISVETAARQ 89 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV-MEGLERSILEDL 162 A G + + L + G L LLG+DH ++ V ME E+ IL+ L Sbjct: 90 AEERGHTLLDEVRILAVRGILRLLGFDHQTSHESAVEMEKEEQLILKSL 138 >gi|319440586|ref|ZP_07989742.1| metal-binding heat shock protein [Corynebacterium variabile DSM 44702] Length = 183 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----TAFASSDGCSSL--MLGDIVLA 107 ELS+ D I L+ + + PT+V+SFP + DG +LGDI+L Sbjct: 36 AELSIHIVDLETIADLHVRWLDLPGPTDVMSFPMDELTPGWGRKDGPPPGPGVLGDIMLC 95 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + + +A+ G + L L +HG LHLLG+DHV ++ M L+ IL Sbjct: 96 PDFAQGQADKAGHPLAHELDLLTVHGVLHLLGFDHVVPEEEQRMFALQNEIL 147 >gi|148270413|ref|YP_001244873.1| hypothetical protein Tpet_1283 [Thermotoga petrophila RKU-1] gi|281412720|ref|YP_003346799.1| protein of unknown function UPF0054 [Thermotoga naphthophila RKU-10] gi|166200326|sp|A5IM74|RRMF_THEP1 RecName: Full=Probable rRNA maturation factor gi|147735957|gb|ABQ47297.1| protein of unknown function UPF0054 [Thermotoga petrophila RKU-1] gi|281373823|gb|ADA67385.1| protein of unknown function UPF0054 [Thermotoga naphthophila RKU-10] Length = 150 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 11/119 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 V ++++ I+ LN ++R D+PT+VL+F D + G+I + I+E Sbjct: 32 VHVNVILVSEDEIKELNQQFRSHDQPTDVLTF--LLMEED-----VYGEIYVCPMIVEEN 84 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH--VDDKDACVMEGLERSILEDLG--INDPYE 169 A FE L+ ++IHG LHL GYDH D K + E ++ + E G +DP E Sbjct: 85 AKEFSNTFEKELLEVVIHGILHLAGYDHEFEDRKSKEMFEKQKKYVEEVWGEWRSDPSE 143 >gi|308062438|gb|ADO04326.1| putative metalloprotease [Helicobacter pylori Cuz20] Length = 140 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 7/94 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +EL LV ++ R +N + RG D T+VLSFP + LG +V+ + + Sbjct: 28 QTIELVLVSDETMR--EINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQ 80 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 A L E + L IHG LHLLGYDH DK Sbjct: 81 ENALKLEHSLEEEIALLFIHGVLHLLGYDHEKDK 114 >gi|218885681|ref|YP_002435002.1| hypothetical protein DvMF_0577 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756635|gb|ACL07534.1| protein of unknown function UPF0054 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 171 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 64/149 (42%), Gaps = 24/149 (16%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--------A 89 +AV + + + VEL LV + I LN + G PTN+LSFP A Sbjct: 22 RAVFAAMQEATGLAGCTVELDLVGDE--EIARLNAAHLGCTGPTNILSFPAHDGGPHDGA 79 Query: 90 FASS---------DGC---SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 ASS DG + LG +VL+ + E + G+E H + L+ HG HL Sbjct: 80 HASSPDRSHGGPHDGPDEDAPCHLGWLVLSLDTWRRECQLYGQEPVEHALRLLAHGLGHL 139 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIND 166 GYDH + D LE D G+ D Sbjct: 140 AGYDHGPEMDEFTDAALEAG--RDAGLAD 166 >gi|288928685|ref|ZP_06422531.1| metalloprotease [Prevotella sp. oral taxon 317 str. F0108] gi|288329669|gb|EFC68254.1| metalloprotease [Prevotella sp. oral taxon 317 str. F0108] Length = 140 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 6/109 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E+ +F + +I +N EY G D T+V++F + D ++ GDIV++ + + Sbjct: 32 KKVGEVGYMFVNDEKILEINNEYLGHDYYTDVITFD--YDEDD----VVNGDIVISLDTV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A + K FE+ L +IIHG LHL G + + +ME E LE Sbjct: 86 RTNAELFDKAFEDELYRVIIHGILHLCGLNDKGPGEREIMEKAENKALE 134 >gi|303284399|ref|XP_003061490.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456820|gb|EEH54120.1| predicted protein [Micromonas pusilla CCMP1545] Length = 689 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 6/88 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS+ I LN E+RG D T+VLSFP AF ++ GD+V++ + + Sbjct: 213 ELSVALCGDAYIRALNNEWRGKDVATDVLSFPQDAFGDF-----VVFGDVVISVDAARRQ 267 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A + L+ HGF+HLLGYDH Sbjct: 268 AAAMRHSTRREARVLLTHGFVHLLGYDH 295 >gi|120437624|ref|YP_863310.1| hypothetical protein GFO_3300 [Gramella forsetii KT0803] gi|145558812|sp|A0M6J8|RRMF_GRAFK RecName: Full=Probable rRNA maturation factor gi|117579774|emb|CAL68243.1| protein belonging to UPF0054 [Gramella forsetii KT0803] Length = 143 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 6/102 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 I ++S +F D + +N EY D T+++SF ++ + GDI ++ E ++ Sbjct: 37 IGDISFIFCDDEYLHKINLEYLAHDTYTDIISFDNTLGNT------LQGDIYISTERVQE 90 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 AN EF+ L ++IHG LH G+ +++ +M E Sbjct: 91 NANSFNTEFDEELKRVLIHGILHFCGFKDKTEREQELMRRKE 132 >gi|282880546|ref|ZP_06289253.1| metalloprotein, YbeY/ UPF0054family [Prevotella timonensis CRIS 5C-B1] gi|281305649|gb|EFA97702.1| metalloprotein, YbeY/ UPF0054family [Prevotella timonensis CRIS 5C-B1] Length = 137 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 9/104 (8%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 I E+ +F D +I +N EY G D T+V++F + D + GDIV++ + + Sbjct: 34 IGEVGYMFVDDKKILEVNNEYLGHDYYTDVITFD--YDEGDTVN----GDIVISLDTVRT 87 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 A + GK +E L +IIHG LHL G ++DK E +E + Sbjct: 88 NAELFGKTYEEELHRVIIHGILHLCG---INDKGPGEREQMEAA 128 >gi|116626740|ref|YP_828896.1| hypothetical protein Acid_7712 [Candidatus Solibacter usitatus Ellin6076] gi|123124469|sp|Q01P09|RRMF_SOLUE RecName: Full=Probable rRNA maturation factor gi|116229902|gb|ABJ88611.1| protein of unknown function UPF0054 [Candidatus Solibacter usitatus Ellin6076] Length = 147 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 10/98 (10%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + LN ++R D T+VLSFP+ LGD+ ++ +A G E + Sbjct: 50 LRRLNRDFRKKDYATDVLSFPSGGPG--------LGDLAISLGRARAQAREFGHTIEQEI 101 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L++HG LHLLG+DH + D M LE+ LG+ Sbjct: 102 SILMLHGVLHLLGHDH--EVDRGRMASLEKRWRAKLGL 137 >gi|254526914|ref|ZP_05138966.1| hypothetical protein P9202_1567 [Prochlorococcus marinus str. MIT 9202] gi|221538338|gb|EEE40791.1| hypothetical protein P9202_1567 [Prochlorococcus marinus str. MIT 9202] Length = 179 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIV 105 Y ++ L L + I +LN ++ + PT+VLSFP S + + LGDI Sbjct: 62 NYIFEKKSFSLGLQIISNQEIASLNMKWMQKNGPTDVLSFPIISDESLNNLDHIELGDIF 121 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +++E+ ++ ++ L HGFLHLLG++H ++ D M + ++ L Sbjct: 122 ISFEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHNNENDLENMLNFQEYLITRL 178 >gi|126695540|ref|YP_001090426.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9301] gi|166227511|sp|A3PAQ0|RRMF_PROM0 RecName: Full=Probable rRNA maturation factor gi|126542583|gb|ABO16825.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9301] Length = 179 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 7/139 (5%) Query: 31 LCEVVFAKAVSNLISK------GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E VF ++ ++ K Y ++ L L + I +LN ++ + PT+VL Sbjct: 40 FWEKVFLSWINTILKKEDYELPNYIFEKKSFSLGLQIISNQEIASLNKKWMQKNGPTDVL 99 Query: 85 SFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 SFP S + + LGDI ++ E+ ++ ++ L HGFLHLLG++H Sbjct: 100 SFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKNSIYREMIWLASHGFLHLLGWEHN 159 Query: 144 DDKDACVMEGLERSILEDL 162 ++ D M + +++ L Sbjct: 160 NEHDLENMLNFQEYLIKKL 178 >gi|303253550|ref|ZP_07339688.1| hypothetical protein APP2_0738 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302647470|gb|EFL77688.1| hypothetical protein APP2_0738 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 409 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 12/122 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVF--AKAVSNLISKGYFVKENIVELSLVFTD 63 + P +DLQIA EN+ +L +L ++ A++ F + E+++ D Sbjct: 1 MTTPMIDLQIACENSE-----NLPSLEQLTLWVQTALAYEAQTEDFPE---TEMTIRIVD 52 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E Sbjct: 53 EAESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLE 110 Query: 124 NH 125 +H Sbjct: 111 SH 112 >gi|190150279|ref|YP_001968804.1| hypothetical protein APP7_1010 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245863|ref|ZP_07527948.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254836|ref|ZP_07536662.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259278|ref|ZP_07541007.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263620|ref|ZP_07545232.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915410|gb|ACE61662.1| hypothetical protein APP7_1010 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306853223|gb|EFM85443.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862207|gb|EFM94175.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866645|gb|EFM98504.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871043|gb|EFN02775.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 409 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 12/122 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVF--AKAVSNLISKGYFVKENIVELSLVFTD 63 + P +DLQIA EN+ +L +L ++ A++ F + E+++ D Sbjct: 1 MTTPMIDLQIACENSE-----NLPSLEQLTLWVQTALAYEAQTEDFPE---TEMTIRIVD 52 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E Sbjct: 53 EAESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLE 110 Query: 124 NH 125 +H Sbjct: 111 SH 112 >gi|32035698|ref|ZP_00135586.1| COG1444: Predicted P-loop ATPase fused to an acetyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208433|ref|YP_001053658.1| hypothetical protein APL_0957 [Actinobacillus pleuropneumoniae L20] gi|126097225|gb|ABN74053.1| hypothetical protein APL_0957 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 409 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 12/122 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVF--AKAVSNLISKGYFVKENIVELSLVFTD 63 + P +DLQIA EN+ +L +L ++ A++ F + E+++ D Sbjct: 1 MTTPMIDLQIACENSE-----NLPSLEQLTLWVQTALAYEAQTEDFPE---TEMTIRIVD 52 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E Sbjct: 53 EAESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLE 110 Query: 124 NH 125 +H Sbjct: 111 SH 112 >gi|317504317|ref|ZP_07962304.1| metal dependent hydrolase [Prevotella salivae DSM 15606] gi|315664568|gb|EFV04248.1| metal dependent hydrolase [Prevotella salivae DSM 15606] Length = 162 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ +F D +I +N EY G D T++++F + D ++ GD+V++ + ++ A Sbjct: 55 DIGYMFVDDAKILQVNNEYLGHDYYTDIITFD--YDEDD----IVSGDLVISIDTVKSNA 108 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + GKE+E+ L +IIHG LHL G + + +ME E L Sbjct: 109 ELFGKEYEDELHRVIIHGILHLCGINDKGPGEREIMEANENKAL 152 >gi|255030168|ref|ZP_05302119.1| putative metalloprotease [Listeria monocytogenes LO28] Length = 86 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%) Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + MLGDI+++ E E +A G L L +HG LHLLGYDH++ + VM GL++ Sbjct: 17 TPRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQK 76 Query: 157 SILEDLGIN 165 +L+ G+ Sbjct: 77 EVLDAYGLE 85 >gi|149177587|ref|ZP_01856189.1| hypothetical protein PM8797T_00232 [Planctomyces maris DSM 8797] gi|148843567|gb|EDL57928.1| hypothetical protein PM8797T_00232 [Planctomyces maris DSM 8797] Length = 165 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 24/167 (14%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 QI ++N+ + HL + E A+S L+ N E+SL D+ I LN Sbjct: 7 FQIEIQNS----QTHL-AIDETQLKTAISFLLQSEQV---NQAEISLAIVDNPTIRQLNQ 58 Query: 73 EYRGIDKPTNVLSF----PTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEF-- 122 +Y D T+VLSF TA ++ G + G+++++ E+ A + E+ Sbjct: 59 QYLEHDYDTDVLSFLLDCDTAMDTNQVEFRGAGRQIEGEVIVSAEM----AVAMSAEYQW 114 Query: 123 --ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 E L+ +IHG LHL GYD + +++ +M E+ I + I+ P Sbjct: 115 PAEQELLLYVIHGLLHLCGYDDLTEEELHIMRQREQQIFDHWQISIP 161 >gi|126314349|ref|XP_001365786.1| PREDICTED: similar to C21orf57 isoform A protein [Monodelphis domestica] Length = 166 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 7/114 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L +V D+ I+ LN YR PT+VLSFP A + L LGDI L Sbjct: 36 DLGVVCVDNQGIQRLNRIYRQAHGPTDVLSFPFHEDLRAGAVPQPECPDDLNLGDIFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E I + G+ + + L HG HLLGY H + M E+ LE+L Sbjct: 96 EYIFHQCQENGENYYDILTVTAAHGLCHLLGYKHNTAAEWREMFQKEKLTLEEL 149 >gi|268315812|ref|YP_003289531.1| hypothetical protein Rmar_0237 [Rhodothermus marinus DSM 4252] gi|262333346|gb|ACY47143.1| protein of unknown function UPF0054 [Rhodothermus marinus DSM 4252] Length = 146 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K + LSLV TD + LN Y G D T+VLSFP + G ++ G+I + + Sbjct: 37 KARLRYLSLVLTDHATVRELNRTYLGHDYDTDVLSFP--LSEEPG---VVEGEIYVDLDT 91 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G F ++HG LHLLGYD + M LE L+ G+ Sbjct: 92 AAERHAEFGATFTQEACRYVVHGLLHLLGYDDATPEARAHMHRLEDRYLQAAGL 145 >gi|317968159|ref|ZP_07969549.1| metal-dependent hydrolase [Synechococcus sp. CB0205] Length = 187 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 15/118 (12%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--------------FASSDGC-SSLML 101 L L + I LN ++R + T+VL+F F +G +L L Sbjct: 64 LGLSLVNDEEIAALNSDWRDKEGATDVLAFAAQDDGLDDAPAIPMPDFDGEEGLLDALEL 123 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 GDIV++ E +A G L+ L HG LHLLG+DH DD M ++ +L Sbjct: 124 GDIVISVETAARQAPEHGHNLREELLFLATHGLLHLLGWDHPDDASLEAMLQRQQQLL 181 >gi|328955428|ref|YP_004372761.1| protein of unknown function UPF0054 [Coriobacterium glomerans PW2] gi|328455752|gb|AEB06946.1| protein of unknown function UPF0054 [Coriobacterium glomerans PW2] Length = 187 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 8/97 (8%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGC-SSLMLGDIVL 106 VELS+ F + + LN +RGID+PT+VLSF + A GC L LGD++L Sbjct: 39 VELSVSFVGASEMRDLNRSWRGIDEPTDVLSFECDRPDSKDSLAGRPGCEQPLELGDVIL 98 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 A EII +A + +++HG LHLLG+DH+ Sbjct: 99 APEIIAAQATGFKNTAADECRLMLVHGLLHLLGWDHI 135 >gi|254442036|ref|ZP_05055512.1| conserved hypothetical protein TIGR00043, putative [Verrucomicrobiae bacterium DG1235] gi|198256344|gb|EDY80652.1| conserved hypothetical protein TIGR00043, putative [Verrucomicrobiae bacterium DG1235] Length = 158 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 8/106 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIE 114 ELS+ F D I L+ ++ PT+V++FP G G+I++ ++ + Sbjct: 46 ELSIAFVDKDYIAQLHDQFMDDPTPTDVITFP-------GDPDFDQAGEIIVCPQVAQEY 98 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A F + L +IHG+LHL G+D + D D M E+ LE Sbjct: 99 AQKANLSFSDELGLYLIHGYLHLCGFDDIADSDRAQMRLAEQQALE 144 >gi|288800393|ref|ZP_06405851.1| metalloprotease [Prevotella sp. oral taxon 299 str. F0039] gi|288332606|gb|EFC71086.1| metalloprotease [Prevotella sp. oral taxon 299 str. F0039] Length = 138 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 8/109 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEI 110 + + ++ +F D +I +N EY D T++++F D C + L GD+V++ + Sbjct: 32 KKVGDIGYMFVDDEKILEVNREYLQHDYYTDIITF-------DYCENDELNGDLVISLDT 84 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A + GK +E L +IIHG LHL+G + + +ME E L Sbjct: 85 VRTNAELFGKTYEEELYRVIIHGVLHLIGINDKGPGEREIMEAAENKAL 133 >gi|307128532|ref|YP_003880562.1| hypothetical protein SMCARI_030 [Candidatus Sulcia muelleri CARI] gi|306482994|gb|ADM89864.1| conserved hypothetical protein [Candidatus Sulcia muelleri CARI] Length = 141 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 11/137 (8%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + + HL E++F+K + ++SK K+NI EL+ +F D + + +N +Y + Sbjct: 3 NYYYETKFHLYN--EILFSKFIFFVVSKE---KKNIKELNFIFCDDNYLININKKYINKN 57 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 T+V++F + + GDI L+ + I+ + K F N L ++IH LHL+ Sbjct: 58 NYTDVITFENYENKN------LYGDIFLSIKRIKYNSFKFKKLFFNELKRVMIHAVLHLI 111 Query: 139 GYDHVDDKDACVMEGLE 155 GY + + +M E Sbjct: 112 GYKDKNKFEKKIMYKKE 128 >gi|297708196|ref|XP_002830862.1| PREDICTED: putative metalloprotease C21orf57-like isoform 1 [Pongo abelii] gi|297708198|ref|XP_002830863.1| PREDICTED: putative metalloprotease C21orf57-like isoform 2 [Pongo abelii] Length = 167 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 12/117 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI L Sbjct: 36 DLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIFLGV 95 Query: 109 EII--EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I + + N +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 96 EYIFHQCQEN---EDYNDVLTVTATHGLCHLLGFTHSTEAEWQQMFQKEKAVLDELG 149 >gi|119952863|ref|YP_945072.1| putative metalloprotease [Borrelia turicatae 91E135] gi|254799885|sp|A1QYL0|RRMF_BORT9 RecName: Full=Probable rRNA maturation factor gi|119861634|gb|AAX17402.1| hypothetical metal-binding protein [Borrelia turicatae 91E135] Length = 148 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS++ ++ I+ LN ++R +PT+VLSF S + GD++++ E +E + Sbjct: 38 ELSVILCNNEYIQKLNSQFRQKSEPTDVLSF-NYLEESGQIDHKIQGDLIISLEYLEFSS 96 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 E + L IHG LHL+GY H Sbjct: 97 LEFNVELYDELQRNTIHGILHLIGYTH 123 >gi|78778570|ref|YP_396682.1| hypothetical protein PMT9312_0184 [Prochlorococcus marinus str. MIT 9312] gi|123554741|sp|Q31CZ9|RRMF_PROM9 RecName: Full=Probable rRNA maturation factor gi|78712069|gb|ABB49246.1| Protein of unknown function UPF0054 [Prochlorococcus marinus str. MIT 9312] Length = 179 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 7/140 (5%) Query: 31 LCEVVFAKAVSNLISKG------YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E VF ++ ++ K Y ++ L L + I +LN ++ + PT+VL Sbjct: 40 FWEKVFLSWINTILKKEDYELPYYIFEKKSFSLGLQIISNQEIASLNKKWMQKNGPTDVL 99 Query: 85 SFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 SFP S + + LGDI ++ E+ ++ ++ L HGFLHLLG++H Sbjct: 100 SFPIISDESLNNLDQIELGDIFISLEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHN 159 Query: 144 DDKDACVMEGLERSILEDLG 163 ++ D M + ++ L Sbjct: 160 NEHDLENMLNFQEYLITRLN 179 >gi|224437000|ref|ZP_03657981.1| putative metalloprotease [Helicobacter cinaedi CCUG 18818] gi|313143472|ref|ZP_07805665.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128503|gb|EFR46120.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 202 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 23/130 (17%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSS----------- 98 L +VF DS + +N +RG T+VLSFP FA D S Sbjct: 48 LEVVFVDSKTMREINRTHRGKLSTTDVLSFPLECDFMACDFAEGDFMESDFDFSPLDSTA 107 Query: 99 ---LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +LG IV+ E+ + + + + L IHGFLH+LG+DH + D LE Sbjct: 108 PFERLLGSIVINTELAKAMSESYNHTLIDEISLLFIHGFLHILGFDH--EVDNGEQRALE 165 Query: 156 RSILEDLGIN 165 + I+E +G+ Sbjct: 166 QCIIESIGLK 175 >gi|327260856|ref|XP_003215249.1| PREDICTED: rRNA maturation factor homolog isoform 1 [Anolis carolinensis] gi|327260858|ref|XP_003215250.1| PREDICTED: rRNA maturation factor homolog isoform 2 [Anolis carolinensis] Length = 165 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 15/119 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----------TAFASSDGCSSLMLGDI 104 +L ++ + I+ LN YR + PT+VLSFP FA + LGDI Sbjct: 36 DLGVICVSNRHIQQLNRCYRQKNIPTDVLSFPFHENLKAGELPQHFAQDE----YNLGDI 91 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ N L + HG HLLGY H D M E IL++L Sbjct: 92 FLGVEYIYQQCVHYNEDYYNILTVTVAHGLCHLLGYKHSTKADWEEMYKKEAQILQELS 150 >gi|149369359|ref|ZP_01889211.1| hypothetical protein SCB49_06027 [unidentified eubacterium SCB49] gi|149356786|gb|EDM45341.1| hypothetical protein SCB49_06027 [unidentified eubacterium SCB49] Length = 138 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 6/104 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S +F D + LN ++ D T+V+SF + + + G+I ++ E + A Sbjct: 35 EVSYIFCDDAYLHKLNVQFLDHDTLTDVISFDNSLGTQ------VHGEIYISVERVRENA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 FE+ L +IIHG LH GY D++A +M E L Sbjct: 89 KEFSDSFEDELHRVIIHGLLHFCGYKDKTDEEAAMMRSKENEAL 132 >gi|157273353|gb|ABV27252.1| conserved hypothetical protein [Candidatus Chloracidobacterium thermophilum] Length = 175 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 20/111 (18%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-----PTAFASSDGCSSL---------- 99 V+++LVF + + LN YRG+D PT+VLSF P+ + Sbjct: 38 VDVNLVFVGDNAMRRLNHIYRGVDAPTDVLSFVHLELPSPYTHRRAQREAWFFSRPETGL 97 Query: 100 -----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 +LG++++A A + L+IHG +HL GYDH D Sbjct: 98 DEEPPLLGEVIIATPTARRYAERHALTCAEEIQRLVIHGIIHLCGYDHETD 148 >gi|116004463|ref|NP_001070588.1| rRNA maturation factor homolog [Bos taurus] gi|81673818|gb|AAI09796.1| Hypothetical protein MGC134244 [Bos taurus] gi|296490846|gb|DAA32959.1| hypothetical protein LOC768063 [Bos taurus] Length = 164 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 14/116 (12%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAYE 109 L +V D+ +I+ +N YR D PT+VLSFP D LGDI L E Sbjct: 37 LGVVCVDNRKIQQMNRIYREQDTPTDVLSFPFHENLKAGEIPQPDFPDDYNLGDIFLGVE 96 Query: 110 IIEIEANVLGKEFENH---LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 I + KE E++ L HG HLLG+ H + + M E+ +L++L Sbjct: 97 FIFQQC----KEDEDYYDILTVTATHGLCHLLGFTHSTEAEWQKMYQKEKQVLQEL 148 >gi|307261440|ref|ZP_07543111.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868835|gb|EFN00641.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 405 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E Sbjct: 40 TEMTIRIVDEAESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKE 97 Query: 115 ANVLGKEFENH 125 E+H Sbjct: 98 VEEQQISLESH 108 >gi|240047404|ref|YP_002960792.1| putative metalloprotease mhp224 [Mycoplasma conjunctivae HRC/581] gi|239984976|emb|CAT04969.1| Putative metalloprotease mhp224 [Mycoplasma conjunctivae] Length = 150 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 1/105 (0%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEANVLG 119 F +++ ++ + Y+ D +VLSFP + L +G+I++ E I +A Sbjct: 44 FVEANYMQKMCKTYKNKDYIADVLSFPDFLVNKQNGKKLAFIGEILMCPETIYYQAQSYQ 103 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + ++ H HLL YDH+D+++A +M I++ + I Sbjct: 104 HTNKREFCYMFTHSVFHLLNYDHIDEQEAKIMHEKVEKIMQKMEI 148 >gi|307250205|ref|ZP_07532161.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857734|gb|EFM89834.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 405 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E Sbjct: 40 TEMTIRIVDEAESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKE 97 Query: 115 ANVLGKEFENH 125 E+H Sbjct: 98 VEEQQISLESH 108 >gi|226355982|ref|YP_002785722.1| metal-dependent hydrolase (metalloprotease) [Deinococcus deserti VCD115] gi|226317972|gb|ACO45968.1| putative metal-dependent hydrolase (metalloprotease) [Deinococcus deserti VCD115] Length = 155 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++V I L E+ D T+VLSFPT + D LGDIV++ + +A Sbjct: 35 EVTVVLVGDRAIRALKLEHWDEDAATDVLSFPT-WEPGDPFVPPHLGDIVISLDTARRQA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 + G + L HG HL G+DH Sbjct: 94 DARGHSLTREVALLASHGMTHLTGHDH 120 >gi|307247949|ref|ZP_07529982.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306855553|gb|EFM87723.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 405 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+++ D LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E Sbjct: 40 TEMTIRIVDEAESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKE 97 Query: 115 ANVLGKEFENH 125 E+H Sbjct: 98 VEEQQISLESH 108 >gi|226443168|ref|NP_001140067.1| metalloprotease C21orf57 [Salmo salar] gi|221221630|gb|ACM09476.1| metalloprotease C21orf57 [Salmo salar] Length = 168 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 7/114 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CS----SLMLGDIVLAY 108 +L ++ D+ +I+ +N YR + PT+VLSFP G C L LGDI L Sbjct: 36 DLGVICVDNRKIQRINNIYRKKNMPTDVLSFPFYEELRPGKLPCPLYRDELNLGDIFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E + + ++ L + HG HLLGY H +++ M E IL + Sbjct: 96 EYVMKQCQQQSQDLHGILTSVTAHGICHLLGYRHETEEEWKEMLQKESYILNEF 149 >gi|163754568|ref|ZP_02161690.1| glutamyl-tRNA synthetase [Kordia algicida OT-1] gi|161325509|gb|EDP96836.1| glutamyl-tRNA synthetase [Kordia algicida OT-1] Length = 140 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 6/105 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +F D + LN E+ D T+++SF + + + GDI ++ E + A Sbjct: 35 EINYIFCDDEYLHKLNVEFLNHDTLTDIISFDNSLGNQ------LHGDIFISVERVADNA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 N FE L ++IHG LH GY D+D M E L+ Sbjct: 89 NDFKVSFEEELRRVMIHGILHYCGYKDKTDEDQAEMTAKENEKLQ 133 >gi|332300776|ref|YP_004442697.1| metalloprotease ybeY [Porphyromonas asaccharolytica DSM 20707] gi|332177839|gb|AEE13529.1| metalloprotease ybeY [Porphyromonas asaccharolytica DSM 20707] Length = 175 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 3/112 (2%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 + + E++ +TD I N + D T+V++FP S ++ GDI+++ + Sbjct: 32 MNRTVGEINFQYTDDEGILRANRAFLQHDYYTDVITFPRE--SEQEGDDVIYGDILISID 89 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE-RSILE 160 + A LG F+ L ++IHG LHLLG D D + +M E R++++ Sbjct: 90 TVATNAQELGVPFQQELYRVMIHGILHLLGIDDQTDSERELMHMAEDRALMQ 141 >gi|309807569|ref|ZP_07701521.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 01V1-a] gi|308169175|gb|EFO71241.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 01V1-a] Length = 92 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +GD+ + E++E A F + ++HG+LHL GYDH+ D +A VM G++ +LE Sbjct: 15 IGDLFICPEVVEKHATEYETGFYREFGYTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLE 74 Query: 161 DLGI 164 + G+ Sbjct: 75 EYGL 78 >gi|320334941|ref|YP_004171652.1| metalloprotease ybeY [Deinococcus maricopensis DSM 21211] gi|319756230|gb|ADV67987.1| metalloprotease ybeY [Deinococcus maricopensis DSM 21211] Length = 157 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++++V I L E+ G D T+VLSFPT F D LGDIV++ + +A Sbjct: 37 DVTVVLVGDRAIRALKREHWGEDAATDVLSFPT-FVPGDPFVPPHLGDIVISLDTAARQA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 G + L H HL+G+DH Sbjct: 96 GARGHSLAREVALLASHAVTHLVGHDH 122 >gi|260655935|ref|ZP_05861404.1| putative metalloprotease [Jonquetella anthropi E3_33 E1] gi|260629551|gb|EEX47745.1| putative metalloprotease [Jonquetella anthropi E3_33 E1] Length = 171 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 13/120 (10%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLA 107 +E+SL F D + LN +YRG ++PT+VLSFP +DG L LGD+V Sbjct: 48 LEISLQFLDEEAMAALNGQYRGENRPTDVLSFP--LWENDGHLELPPSGGVLPLGDLVFC 105 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDA---CVMEGLERSILEDLG 163 ++E A G ++ L L+ HG LHL+ +DH +++ A V E + ILE G Sbjct: 106 RPVLEANAAAAGTSVQSELALLLAHGALHLIAWDHDTEERRAAMWAVQERYRQRILERAG 165 >gi|330813322|ref|YP_004357561.1| metal-dependent hydrolase [Candidatus Pelagibacter sp. IMCC9063] gi|327486417|gb|AEA80822.1| metal-dependent hydrolase [Candidatus Pelagibacter sp. IMCC9063] Length = 98 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%) Query: 67 IETLNFEYRGIDKPTNVLSFP----TAFASSD--GCSSLMLGDIVLAYEIIEIEANVLGK 120 ++ LN ++R I K T+VLSFP F +++ LGD+ +Y+ I+ + Sbjct: 1 MKKLNKDFRRILKDTDVLSFPHHEKNFFLKRKLPTVNNIYLGDLAFSYDYIKKQKT---- 56 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 F ++ + IHG LHL+GY+H + K+ M LER +L Sbjct: 57 NFVEYVNKIFIHGCLHLVGYEHDNLKNYKEMHSLERKLL 95 >gi|157412539|ref|YP_001483405.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9215] gi|166980256|sp|A8G2I8|RRMF_PROM2 RecName: Full=Probable rRNA maturation factor gi|157387114|gb|ABV49819.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9215] Length = 179 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 7/139 (5%) Query: 31 LCEVVFAKAVSNLISK------GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E VF ++ ++ K Y ++ L L + I +LN ++ + PT+VL Sbjct: 40 FWEKVFLSWINIILKKKDYELPNYISEKKSFSLGLRIISNQEIASLNKKWMQKNGPTDVL 99 Query: 85 SFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 SFP S + + LGDI ++ E+ ++ ++ L HGFLHLLG++H Sbjct: 100 SFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKHTIYREMIWLASHGFLHLLGWEHN 159 Query: 144 DDKDACVMEGLERSILEDL 162 ++ D M L+ ++ L Sbjct: 160 NENDLENMLNLQEYLITRL 178 >gi|332872338|ref|XP_001145583.2| PREDICTED: rRNA maturation factor homolog isoform 1 [Pan troglodytes] gi|332872340|ref|XP_003319177.1| PREDICTED: rRNA maturation factor homolog isoform 2 [Pan troglodytes] Length = 167 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 12/117 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI L Sbjct: 36 DLGIICVDNKNIQHINRVYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIFLGV 95 Query: 109 EII--EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I + + N +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 96 EYIFHQCKEN---EDYNDILTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 149 >gi|321311000|ref|YP_004193329.1| hypothetical protein HF1_14820 [Mycoplasma haemofelis str. Langford 1] gi|319802844|emb|CBY93490.1| conserved hypothetical protein [Mycoplasma haemofelis str. Langford 1] Length = 132 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 10/105 (9%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 +A+ + + + + VEL++V + I +LN YR DK T+VLSFP S + Sbjct: 22 EAIYAHLKDRFLIPDCEVELAIV--NEEEIRSLNATYRNQDKVTDVLSFPVKTESHER-- 77 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 LG I Y + I N ++F + +L IH FLHLLGY+H Sbjct: 78 --FLGAIYFCYSEV-INRN---EDFLSGFCYLFIHSFLHLLGYEH 116 >gi|281422349|ref|ZP_06253348.1| putative metalloprotease [Prevotella copri DSM 18205] gi|281403580|gb|EFB34260.1| putative metalloprotease [Prevotella copri DSM 18205] Length = 144 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 14/106 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ +F D +I +N EY G D T+V++F + D ++ GDIV++ + + A Sbjct: 36 EIGYMFVDDEKILEVNNEYLGHDYYTDVITFD--YDEDD----VINGDIVISLDTVRTNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GK +++ L +IIHG LHL G ++DK ER I+E+ Sbjct: 90 EQFGKTYDDELHRVIIHGILHLCG---INDKGPG-----EREIMEE 127 >gi|332519443|ref|ZP_08395910.1| protein of unknown function UPF0054 [Lacinutrix algicola 5H-3-7-4] gi|332045291|gb|EGI81484.1| protein of unknown function UPF0054 [Lacinutrix algicola 5H-3-7-4] Length = 136 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Query: 50 VKENIVE--LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLA 107 ++EN +E ++ VF D + LN E+ D T+++SF + + + GDI ++ Sbjct: 27 LQENCIEEEINYVFCDDEYLHKLNVEFLNHDTLTDIISFDYSVGKN------LQGDIFIS 80 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E +E A FE L +++HG LH GY D +A +M E L Sbjct: 81 TERVEDNAKDFNVSFETELQRVLVHGILHYCGYKDKSDSEAKLMREKENFYL 132 >gi|288925424|ref|ZP_06419358.1| metalloprotease [Prevotella buccae D17] gi|288337895|gb|EFC76247.1| metalloprotease [Prevotella buccae D17] Length = 139 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 ++R + KAV+ + + E+ +F D +I +N EY G D T++++F Sbjct: 13 NIRKRTVSAWIKAVAATFGR------KVGEIGYMFVDDEKILEVNNEYLGHDYYTDIITF 66 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + D S GD+V++ + + A GK++ L +IIHG LHL G + Sbjct: 67 D--YDEGDTIS----GDLVISLDTVRTNAEKFGKDYNEELHRVIIHGILHLCGINDKGPG 120 Query: 147 DACVMEGLERSIL 159 + +ME E L Sbjct: 121 EREIMEAHENKAL 133 >gi|331698255|ref|YP_004334494.1| metalloprotease ybeY [Pseudonocardia dioxanivorans CB1190] gi|326952944|gb|AEA26641.1| metalloprotease ybeY [Pseudonocardia dioxanivorans CB1190] Length = 178 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 7/112 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLA 107 VEL++ + + L+ + PT+V++FP T + +LGD+VL Sbjct: 35 VELAITAVTTEAMSELHERWMDEPGPTDVMAFPMDELAEETRRPDAPDIGPALLGDVVLC 94 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G + L L +HG LHLLGYDH + + M L+ +L Sbjct: 95 PAFARDQARKAGHGLPDELHLLTVHGVLHLLGYDHAEPEQEREMFSLQDRLL 146 >gi|54607072|ref|NP_478061.1| rRNA maturation factor homolog isoform 1 [Homo sapiens] gi|47117865|sp|P58557|YBEY_HUMAN RecName: Full=rRNA maturation factor homolog gi|119629693|gb|EAX09288.1| chromosome 21 open reading frame 57, isoform CRA_a [Homo sapiens] gi|119629696|gb|EAX09291.1| chromosome 21 open reading frame 57, isoform CRA_a [Homo sapiens] Length = 167 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 12/117 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI L Sbjct: 36 DLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIFLGV 95 Query: 109 EII--EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I + + N +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 96 EYIFHQCKEN---EDYNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 149 >gi|212703304|ref|ZP_03311432.1| hypothetical protein DESPIG_01347 [Desulfovibrio piger ATCC 29098] gi|212673264|gb|EEB33747.1| hypothetical protein DESPIG_01347 [Desulfovibrio piger ATCC 29098] Length = 143 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE LV D I N Y G PTNVLSFP G SL G ++L+ + + E Sbjct: 45 VETHLV--DDACIARANQRYMGCTGPTNVLSFP-------GDESLP-GVMLLSLDTLNRE 94 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G++ HL+ L+ H HL GYDH ++ DA Sbjct: 95 CLLYGQDPAEHLLRLLAHSVGHLAGYDHGEEMDA 128 >gi|313886905|ref|ZP_07820608.1| translation metalloprotein YbeY [Porphyromonas asaccharolytica PR426713P-I] gi|312923602|gb|EFR34408.1| translation metalloprotein YbeY [Porphyromonas asaccharolytica PR426713P-I] Length = 175 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 3/112 (2%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 + + E++ +TD I N + D T+V++FP S + GDI+++ + Sbjct: 32 MNRTVGEINFQYTDDEGILRANRAFLQHDYYTDVITFPRE--SEQEGDDAIYGDILISID 89 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE-RSILE 160 + A LG F+ L ++IHG LHLLG D D + +M E R++++ Sbjct: 90 TVATNAQELGVPFQQELYRVMIHGILHLLGIDDQTDSERELMHMAEDRALMQ 141 >gi|312890776|ref|ZP_07750306.1| protein of unknown function UPF0054 [Mucilaginibacter paludis DSM 18603] gi|311296739|gb|EFQ73878.1| protein of unknown function UPF0054 [Mucilaginibacter paludis DSM 18603] Length = 142 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 +I++GY +KE L+ +F + LN +Y D T++++F + S+G +++G Sbjct: 30 VIAEGYKLKE----LNYIFCSDRYLIELNQQYLNHDTYTDIITFDNS--ESEG---IVIG 80 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI ++ E I+ A++ L +IIHG LHLLGY D +M E L L Sbjct: 81 DIFISVERIKENASLFSVSEAEELHRVIIHGVLHLLGYKDKTKSDKALMTSKENLYLSQL 140 Query: 163 GI 164 + Sbjct: 141 SV 142 >gi|297287364|ref|XP_002803146.1| PREDICTED: putative metalloprotease C21orf57-like [Macaca mulatta] Length = 167 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 8/115 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YRG + PT+VLSFP F + LGDI L Sbjct: 36 DLGIICVDNKNIQHINRIYRGRNVPTDVLSFPFHEHLKAGEFPLPEFPDDYNLGDIFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I + +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 96 EYIFHQCKE-DEDYNDVLTVTATHGLCHLLGFTHSTEAEWQQMFQKEKAVLDELG 149 >gi|149546328|ref|XP_001514071.1| PREDICTED: similar to C21orf57 isoform A protein [Ornithorhynchus anatinus] Length = 165 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 7/114 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L +V D+ I+ +N YR + PT+VLSFP LGD+ L Sbjct: 36 DLGIVCVDNKNIQRVNNTYRQKNVPTDVLSFPFHENLKAGEMPQPRFPEDYNLGDVFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E I + ++F L + HG HLLGY H + + M E+ IL++L Sbjct: 96 EYIFQQCQEGNEDFYGVLTVIAAHGLCHLLGYRHDTEAEWQEMYQKEKHILDEL 149 >gi|301604850|ref|XP_002932054.1| PREDICTED: putative metalloprotease C21orf57-like [Xenopus (Silurana) tropicalis] Length = 165 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 13/118 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIV 105 +L ++ + RI +N YRG D T+VLSFP ASSD LGDI Sbjct: 36 DLGIICVSNARIRHINRVYRGQDSVTDVLSFPFHEDLNPSLLPIPASSD---EYNLGDIY 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L +HG HLLG+ H + + M E IL+++ Sbjct: 93 LGVEFIYQQCQKTQEDYSSILTICAVHGLCHLLGHQHNNPEQWKQMLEKETEILKEIN 150 >gi|260591891|ref|ZP_05857349.1| putative metalloprotease [Prevotella veroralis F0319] gi|260536175|gb|EEX18792.1| putative metalloprotease [Prevotella veroralis F0319] Length = 143 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 14/106 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ +F D +I +N EY G D T++++F + D ++ GD+V++ + + A Sbjct: 36 EIGYMFVDDEKILEVNNEYLGHDYYTDIITFD--YDEGD----VLNGDLVISLDTVRSNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + GK +E L +IIHG LHL G ++DK ER I+E+ Sbjct: 90 ELFGKLYEEELFRVIIHGILHLCG---INDKGPG-----EREIMEE 127 >gi|332291816|ref|YP_004430425.1| protein of unknown function UPF0054 [Krokinobacter diaphorus 4H-3-7-5] gi|332169902|gb|AEE19157.1| protein of unknown function UPF0054 [Krokinobacter diaphorus 4H-3-7-5] Length = 135 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 ++ + E++ +F D + LN EY D T+V+SF + S D S GD+ ++ E Sbjct: 30 QKQMGEINYIFCDDAYLHKLNVEYLNHDTLTDVISFD--YTSGDVIS----GDVYISVER 83 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +E A F++ L +++HG LH GY D +A M E Sbjct: 84 VEDNAADFKTSFKDELSRVMVHGLLHYCGYKDKSDDEAKEMRAKE 128 >gi|317125261|ref|YP_004099373.1| hypothetical protein Intca_2136 [Intrasporangium calvum DSM 43043] gi|315589349|gb|ADU48646.1| protein of unknown function UPF0054 [Intrasporangium calvum DSM 43043] Length = 155 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 +L + D + L+ ++ + PT+V+SFP LGDIVL + Sbjct: 35 ADLCIKLVDEPAMSVLHEQWMDLPGPTDVMSFPMDELRPGREGQEPEEGTLGDIVLCPSV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLGYDH + + M L+R +L Sbjct: 95 ATRQAAEAGHAPMEEMLLLTTHGILHLLGYDHAEPDEEREMFELQRQLL 143 >gi|269215613|ref|ZP_06159467.1| cupin domain protein [Slackia exigua ATCC 700122] gi|269131100|gb|EEZ62175.1| cupin domain protein [Slackia exigua ATCC 700122] Length = 185 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 13/102 (12%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-----AFASSD---GCS-----SLML 101 E S+ F I LN E+RGID+PT+VLSF AF D G + +L Sbjct: 58 TEASIAFVSDDEIRRLNAEFRGIDRPTDVLSFECDGMDDAFDEGDVFEGSGMPDEETFLL 117 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 GD+++A ++ + G + L L++HG LHL G+DHV Sbjct: 118 GDVIIATDVARAQTERFGTTPQEELCVLLVHGLLHLCGWDHV 159 >gi|17061811|gb|AAK74138.1| C21orf57 isoform A protein [Homo sapiens] Length = 299 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 12/117 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI L Sbjct: 168 DLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIFLGV 227 Query: 109 EII--EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I + + N +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 228 EYIFHQCKEN---EDYNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 281 >gi|269115217|ref|YP_003302980.1| hypothetical protein MHO_4420 [Mycoplasma hominis] gi|268322842|emb|CAX37577.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114] Length = 150 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEA 115 + ++F + +++ LN +R + T++LSFP + + LG I+++ I+ +A Sbjct: 39 VDVMFVTAKKMKKLNNLHRQKNYTTDILSFPLDSQEELNFLDEIELGQIIISPWKIKKQA 98 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ HG HL G+DH+ +++A +M G +I+ L I Sbjct: 99 KEFNHSLRREFCYIFAHGIAHLFGFDHITEEEAKIMNGHVDNIMNKLNI 147 >gi|187917939|ref|YP_001883502.1| putative metalloprotease [Borrelia hermsii DAH] gi|238689307|sp|B2S1P5|RRMF_BORHD RecName: Full=Probable rRNA maturation factor gi|119860787|gb|AAX16582.1| hypothetical metal-binding protein [Borrelia hermsii DAH] Length = 148 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+V ++ I+ LN +R +PT+VLSF + + + GD++++ E +E + Sbjct: 38 ELSVVLCNNEYIQKLNSAFRQKSEPTDVLSF-NYLEENGQINHKIQGDLIISLEYLEFSS 96 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 E + L IHG LHL+GY H Sbjct: 97 LEFNVEMYDELQRNTIHGILHLIGYTH 123 >gi|298483806|ref|ZP_07001978.1| metalloprotease [Bacteroides sp. D22] gi|298269993|gb|EFI11582.1| metalloprotease [Bacteroides sp. D22] Length = 139 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 37 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGDRLSGDLFISLDTIRTN 89 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +EN L +IIHG LHL G + + +MEG E L Sbjct: 90 AEQFGTSYENELHRVIIHGILHLCGINDKGPGEREIMEGAENKAL 134 >gi|189485340|ref|YP_001956281.1| membrane-associated hydrolase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254801664|sp|B1GZY8|RRMF_UNCTG RecName: Full=Probable rRNA maturation factor gi|170287299|dbj|BAG13820.1| membrane-associated hydrolase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 141 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ + D I LN +YR I + T+V+SF +GDI ++ + +A Sbjct: 38 QVNFIMVDDKEIRKLNTKYRKIKRITDVISFLVV-------PEFFMGDIYISKTRSQEQA 90 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 ++ L +L+IHG LHL GY D Sbjct: 91 KEYSNTWQQELAYLVIHGLLHLCGYTDYD 119 >gi|330998027|ref|ZP_08321858.1| translation metalloprotein YbeY [Paraprevotella xylaniphila YIT 11841] gi|329569328|gb|EGG51108.1| translation metalloprotein YbeY [Paraprevotella xylaniphila YIT 11841] Length = 141 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 8/109 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS-LMLGDIVLAYEI 110 + + E++ +F D +I +N +Y G D T++++F D C ++ GD+ ++ + Sbjct: 32 KRVGEIAYIFVDDEKILEVNRQYLGHDYYTDIITF-------DYCEGDVISGDLFISLDT 84 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A +G +E L +IIHG LHL G + + +ME E L Sbjct: 85 VRTNAEQVGATYEEELHRVIIHGILHLCGINDKGPGEREIMEAAEDKAL 133 >gi|147856469|emb|CAN80775.1| hypothetical protein VITISV_042331 [Vitis vinifera] Length = 532 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 63/133 (47%), Gaps = 26/133 (19%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 RLD+ IA++ A G L + + + + G F EN VELS++ + I Sbjct: 115 RLDVPIAMKLAFEG-------LKDSEYKTRDTTISDLGGF--EN-VELSVLLCNDEFIRK 164 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN E+R D T+ LMLGDIV++ E +A G + + L Sbjct: 165 LNKEWRDEDHATD----------------LMLGDIVISVETAARQAEERGHTLLDEIRIL 208 Query: 130 IIHGFLHLLGYDH 142 ++HG LHLLG+DH Sbjct: 209 MVHGLLHLLGFDH 221 >gi|281424893|ref|ZP_06255806.1| putative metalloprotease [Prevotella oris F0302] gi|299141980|ref|ZP_07035114.1| metalloprotease [Prevotella oris C735] gi|281401011|gb|EFB31842.1| putative metalloprotease [Prevotella oris F0302] gi|298576442|gb|EFI48314.1| metalloprotease [Prevotella oris C735] Length = 142 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 6/104 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ +F D +I +N +Y G D T++++F + D ++ GD+V++ + + A Sbjct: 36 DIGYMFVDDEKILEVNNDYLGHDYYTDIITFD--YDEDD----IISGDLVISLDTVRTNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 GKE+++ L +IIHG LHL G + + +ME E L Sbjct: 90 EQFGKEYDDELHRVIIHGILHLCGINDKGPGEREIMEANENKAL 133 >gi|315606861|ref|ZP_07881870.1| possible metal dependent hydrolase [Prevotella buccae ATCC 33574] gi|315251526|gb|EFU31506.1| possible metal dependent hydrolase [Prevotella buccae ATCC 33574] Length = 139 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 12/133 (9%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 ++R + KAV+ + + E+ +F D ++ +N EY G D T++++F Sbjct: 13 NIRKRTVSAWIKAVAATFGR------KVGEIGYMFVDDEKMLEVNNEYLGHDYYTDIITF 66 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + D S GD+V++ + + A GK++ L +IIHG LHL G + Sbjct: 67 D--YDEGDTIS----GDLVISLDTVRTNAEKFGKDYNEELHRVIIHGILHLCGINDKGPG 120 Query: 147 DACVMEGLERSIL 159 + +ME E L Sbjct: 121 EREIMEAHENKAL 133 >gi|332881691|ref|ZP_08449339.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680330|gb|EGJ53279.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 141 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 8/109 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS-LMLGDIVLAYEI 110 + + E++ +F D +I +N +Y G D T++++F D C ++ GD+ ++ + Sbjct: 32 KRVGEIAYIFVDDEKILEVNRQYLGHDYYTDIITF-------DYCEGDVISGDLFISLDT 84 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A +G +E L +IIHG LHL G + + +ME E L Sbjct: 85 VRTNAEQVGATYEEELHRVIIHGILHLCGINDKGPGEREIMEAAEDKAL 133 >gi|311745076|ref|ZP_07718861.1| putative metalloprotease [Algoriphagus sp. PR1] gi|126577589|gb|EAZ81809.1| putative metalloprotease [Algoriphagus sp. PR1] Length = 141 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 5/103 (4%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 NI EL+ +F + +N EY D T++++F + + GDI ++ + ++ Sbjct: 34 NISELNYIFCSDEYLYNINVEYLDHDTYTDIITFDNS-----EEEQTIEGDIFISIDRVQ 88 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +N LG ++ L +I HG HL+GY D +A M E Sbjct: 89 ENSNKLGATLQDELSRVISHGLFHLMGYKDKDKNEAEEMRNKE 131 >gi|163840663|ref|YP_001625068.1| putative metalloprotease [Renibacterium salmoninarum ATCC 33209] gi|189039400|sp|A9WQS5|RRMF_RENSM RecName: Full=Probable rRNA maturation factor gi|162954139|gb|ABY23654.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 157 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 10/140 (7%) Query: 41 SNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFA 91 + L+ FV E + ELS++ D +E L+ E+ T+VLSFP Sbjct: 16 AELVRLSRFVFEKLYLHPQTELSIILADREAMEKLHVEWMYEPGATDVLSFPMDELRPGT 75 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 S + +LGDIV+ ++ + +A G E+ L+ L HG LHLLGYDH D ++ M Sbjct: 76 VSRPAPAGLLGDIVICPQVAQEQAQAGGHSVEDELLLLTTHGLLHLLGYDHEDPEEKAEM 135 Query: 152 EGLERSILED-LGINDPYEV 170 GL+R +L LG + P E Sbjct: 136 FGLQRELLTSFLGRDAPAET 155 >gi|282858743|ref|ZP_06267896.1| metalloprotein, YbeY/ UPF0054 family [Prevotella bivia JCVIHMP010] gi|282588492|gb|EFB93644.1| metalloprotein, YbeY/ UPF0054 family [Prevotella bivia JCVIHMP010] Length = 144 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 14/106 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ +F D +I +N EY G D T++++F + D S GD+V++ + + A Sbjct: 36 DIGYMFVDDEKILEVNNEYLGHDYYTDIITFD--YDEDDTIS----GDLVISLDTVRTNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + K +E+ L +IIHG LHL G ++DK ER I+ED Sbjct: 90 ELFHKTYEDELERVIIHGILHLCG---INDKGPG-----EREIMED 127 >gi|300870905|ref|YP_003785776.1| hypothetical protein BP951000_1287 [Brachyspira pilosicoli 95/1000] gi|300688604|gb|ADK31275.1| unnamed protein product [Brachyspira pilosicoli 95/1000] Length = 153 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 22/119 (18%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++LVF++ I LN ++R DK T+VL+FP A+ GDIV++YE Sbjct: 35 EVNLVFSNDDYIRGLNKQFRNKDKATDVLTFPMGEANEG-------GDIVISYEW----- 82 Query: 116 NVLGKEFENHL----VHLIIHGFLHLLGYDHVD-----DKDACVMEGLERSILEDLGIN 165 VL + E+ + + LI+H LHL G H K+ M L + ILE + N Sbjct: 83 -VLDRYSEDKIKMTVIKLIVHSILHLQGIHHNYTEKSLKKNYKRMRELYKKILEHIKGN 140 >gi|225620349|ref|YP_002721606.1| putative metal-dependent hydrolase [Brachyspira hyodysenteriae WA1] gi|511147|emb|CAA51656.1| unnamed protein product [Brachyspira hyodysenteriae] gi|225215168|gb|ACN83902.1| putative metal-dependent hydrolase [Brachyspira hyodysenteriae WA1] Length = 141 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 9/87 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++L+F D I+ LN ++R DK T+VL+FP + GDIV++YE + Sbjct: 34 EVNLLFCDDEYIKNLNRQFRNKDKATDVLTFPMGDINEG-------GDIVISYEWVVTRY 86 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH 142 + ++ + ++ LIIH LHL G H Sbjct: 87 S--DEKIKKTVLKLIIHSILHLKGIHH 111 >gi|311695359|gb|ADP98232.1| metalloprotease YbeY [marine bacterium HP15] Length = 115 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 E+ E+++ + + LN +YRG D PTNVLSFP F + G + + GD+V+ ++ Sbjct: 29 EDPSEVTVRIVGTEESQALNHQYRGRDYPTNVLSFP--FEAPAGITVPLAGDLVICAPVV 86 Query: 112 EIEA 115 E EA Sbjct: 87 EKEA 90 >gi|119511142|ref|ZP_01630260.1| hypothetical protein N9414_17021 [Nodularia spumigena CCY9414] gi|119513512|ref|ZP_01632533.1| hypothetical protein N9414_11289 [Nodularia spumigena CCY9414] gi|119461828|gb|EAW42844.1| hypothetical protein N9414_11289 [Nodularia spumigena CCY9414] gi|119464237|gb|EAW45156.1| hypothetical protein N9414_17021 [Nodularia spumigena CCY9414] Length = 175 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 5/115 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-----CSSLMLGDIVLAYEI 110 E+ L TD I++LN +YR DKPT+VLSF + L LGDIV++ Sbjct: 56 EIGLRLTDDAEIQSLNAQYRHQDKPTDVLSFAALEVDFPQIPEMLVAPLYLGDIVISVNT 115 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E +A G L L HG LHLLG+DH D++ M + +L+ + I+ Sbjct: 116 AERQAQQQGHSLPTELAWLAAHGLLHLLGWDHPDEEQLMQMLKQQVELLKKISID 170 >gi|113955023|ref|YP_731849.1| hypothetical protein sync_2661 [Synechococcus sp. CC9311] gi|122945509|sp|Q0I6S3|RRMF_SYNS3 RecName: Full=Probable rRNA maturation factor gi|113882374|gb|ABI47332.1| Hypothetical UPF0054 protein [Synechococcus sp. CC9311] Length = 177 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--GCSSLMLGDIVLAYEIIE 112 + L + D I LN +R PT+VLSF + L LGDIV++ Sbjct: 63 LSLGISLLDDASIAELNLHWRQKPTPTDVLSFAALESEMPMVAGQELELGDIVVSVPTAR 122 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +A E L L+ HG LHLL +DH D+ M Sbjct: 123 RQALEQKHGLERELRWLVSHGLLHLLSWDHPDEDALAAM 161 >gi|284030364|ref|YP_003380295.1| hypothetical protein Kfla_2422 [Kribbella flavida DSM 17836] gi|283809657|gb|ADB31496.1| protein of unknown function UPF0054 [Kribbella flavida DSM 17836] Length = 158 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 6/111 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLM--LGDIVLAYE 109 ELS+ D + + E+ + PT+V+S+P + +D + LGDI L Sbjct: 36 ELSIKLVDEDTMARYHVEFLDLPGPTDVMSWPMDELRPGSDNDDAEPPLGHLGDIALCPT 95 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + + G L L +HG LHLLGYDH + + M ++ +LE Sbjct: 96 VAAAQGAKAGHGTWAELELLTVHGILHLLGYDHAEPAEKAEMWDVQGRLLE 146 >gi|332664486|ref|YP_004447274.1| metalloprotease ybeY [Haliscomenobacter hydrossis DSM 1100] gi|332333300|gb|AEE50401.1| metalloprotease ybeY [Haliscomenobacter hydrossis DSM 1100] Length = 159 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + + +EI+ + + + ++S+ K ++ ++ VF D + LN EY D Sbjct: 21 SFFAEEIYFEPANPELLRRWIEEIVSRE---KRELIFINYVFCDDPYLLKLNQEYLQHDT 77 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++FP ++ GD+ ++ + I A+ G FE L ++IHG LHL G Sbjct: 78 LTDIITFPY------HDPPIVEGDVFISVDRIHDNAHQFGVTFEQELHRVMIHGVLHLCG 131 Query: 140 Y 140 Y Sbjct: 132 Y 132 >gi|123967737|ref|YP_001008595.1| metal-dependent hydrolase [Prochlorococcus marinus str. AS9601] gi|145572764|sp|A2BNX7|RRMF_PROMS RecName: Full=Probable rRNA maturation factor gi|123197847|gb|ABM69488.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. AS9601] Length = 179 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIV 105 Y + L L + I +LN ++ + PT+VLSFP S + + LGDI Sbjct: 62 NYIFDKKSFSLGLQIISNQEIASLNKKWMQKNGPTDVLSFPIISDESLNNLDHIELGDIF 121 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++ E+ ++ ++ L HGFLHLLG++H ++ D M + ++ L Sbjct: 122 ISLEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHNNEHDLENMLNFQEYLITRL 178 >gi|262280176|ref|ZP_06057960.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257954|gb|EEY76688.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 160 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEI 113 E+ + D + LN +YR DKPTNVLSFP+ + LGD+V+ ++ Sbjct: 41 EIGVACVDLAESQQLNLQYREKDKPTNVLSFPSDIPEEVLPMLDAFPLGDLVICIPVVLQ 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 EA K + H HL++HG LHLLGYDH D++A MEGLE IL L I++PY+ Sbjct: 101 EAVEQKKTAQEHFAHLLVHGVLHLLGYDHETSDEEAEEMEGLEVEILAKLNIDNPYQ 157 >gi|157818335|ref|NP_001101999.1| hypothetical protein LOC361822 [Rattus norvegicus] gi|149043696|gb|EDL97147.1| similar to RIKEN cDNA A130042E20; open reading frame 57 (predicted) [Rattus norvegicus] Length = 164 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 8/114 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP F LGD+ L Sbjct: 36 DLGIICVDNKNIQNINRIYRNKNVPTDVLSFPFHENLKAGEFPQPRSPDDYNLGDVFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E I + +++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 96 EYI-FQYCKGNEDYYDVLTVTATHGLCHLLGFTHSSEAEWQKMYNQEKLVLEEL 148 >gi|146298765|ref|YP_001193356.1| hypothetical protein Fjoh_1004 [Flavobacterium johnsoniae UW101] gi|189038538|sp|A5FL87|RRMF_FLAJ1 RecName: Full=Probable rRNA maturation factor gi|146153183|gb|ABQ04037.1| protein of unknown function UPF0054 [Flavobacterium johnsoniae UW101] Length = 139 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 6/105 (5%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 ++N E++ +F D + +N EY D T+++SF + + GDI ++ E Sbjct: 30 EKNEGEINYIFCDDEYLHKINVEYLNHDTLTDIISFDYTVGNE------ISGDIFVSVER 83 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +E A FE L ++ HG LH GY D DA +M E Sbjct: 84 VEDNAKDFNVSFEEELKRVLAHGILHYCGYKDKSDADAELMRSKE 128 >gi|229815232|ref|ZP_04445568.1| hypothetical protein COLINT_02278 [Collinsella intestinalis DSM 13280] gi|229809242|gb|EEP45008.1| hypothetical protein COLINT_02278 [Collinsella intestinalis DSM 13280] Length = 172 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 80/142 (56%), Gaps = 9/142 (6%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 V A A L ++G E VE+SL + D + LN ++R ID+ T+VLSF A + Sbjct: 23 VCAIAAHVLAAEGV---ERDVEISLSYVDEDEMHDLNRQWRDIDRTTDVLSFECDSAFDE 79 Query: 95 GCS---SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 L LGDI+LA E+I +A G + + +++HG LHLLGYDH++D +A M Sbjct: 80 DIPLDEVLELGDIILAPEVIARQAPGFGNDPTDECRLMLVHGLLHLLGYDHIEDDEAEEM 139 Query: 152 EGLERSILEDLGI---NDPYEV 170 E E ++L +L + +DP +V Sbjct: 140 EAREDALLRELAVQRGDDPSKV 161 >gi|257063748|ref|YP_003143420.1| conserved hypothetical protein TIGR00043 [Slackia heliotrinireducens DSM 20476] gi|256791401|gb|ACV22071.1| conserved hypothetical protein TIGR00043 [Slackia heliotrinireducens DSM 20476] Length = 163 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 18/112 (16%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D +H L V + ++ + EN E+S+ F D I+ LN EYRGIDKPT+V Sbjct: 6 DVLHGEDLVSQVDVERLAEYVLTQEGCPEN-TEVSITFVDDEEIQRLNLEYRGIDKPTDV 64 Query: 84 LSFPT-----AFASSDGC--------SSLMLGDIVLAYEIIEIEANVLGKEF 122 LSF F D +LGDI++A ++ AN +F Sbjct: 65 LSFECDGYDDEFDDGDAYEDAGVPDDEPFLLGDIIIATDV----ANAQTAQF 112 >gi|295131912|ref|YP_003582588.1| metalloprotease [Zunongwangia profunda SM-A87] gi|294979927|gb|ADF50392.1| metalloprotease [Zunongwangia profunda SM-A87] Length = 146 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 V+ K + +IS + + E+S +F D + +N + D T+++SF D Sbjct: 23 VYKKWIERVISSE---GKRLGEISYIFCDDDYLLDINQRFLNHDTYTDIISFD------D 73 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 +L+ GDI ++ E + A ++FE L +++HG LH GY D++A +M Sbjct: 74 SIGNLLNGDIYISTERVRENALEFNEDFETELKRVLVHGILHYCGYKDKSDEEAMLMREK 133 Query: 155 E 155 E Sbjct: 134 E 134 >gi|84688108|ref|ZP_01015961.1| hypothetical protein 1099457000212_RB2654_05425 [Maritimibacter alkaliphilus HTCC2654] gi|84663878|gb|EAQ10389.1| hypothetical protein RB2654_05425 [Rhodobacterales bacterium HTCC2654] Length = 127 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 14/104 (13%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L L E A ++ L G E++L+ D RI LN E+R PTNVLS Sbjct: 15 LGLEALAETACAATLAKLGIAG-------AEIALLACDDDRIAALNTEFRDKPTPTNVLS 67 Query: 86 FPTAFASSDGCSS-------LMLGDIVLAYEIIEIEANVLGKEF 122 +P+ +D + LGDI +AY+ EA GK Sbjct: 68 WPSEERGADQPGGDPYPPEDMELGDIAIAYDTCAGEAAEAGKPM 111 >gi|225715688|gb|ACO13690.1| metalloprotease C21orf57 [Esox lucius] Length = 168 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 7/114 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CS----SLMLGDIVLAY 108 +L ++ D+ +I+ +N YR + PT+VLSFP G C LGDI L Sbjct: 36 DLGVICVDNRKIQRINNIYRKNNSPTDVLSFPFYEELRPGKLPCPLHRDEQNLGDIFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E + + ++ L + HG HLLGY H +++ M E IL + Sbjct: 96 EYLMKQCQQESQDLHETLTSVTAHGICHLLGYRHETEEEWKEMLQKESYILNEF 149 >gi|115380060|ref|ZP_01467104.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|310822820|ref|YP_003955178.1| hypothetical protein STAUR_5586 [Stigmatella aurantiaca DW4/3-1] gi|115362935|gb|EAU62126.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|309395892|gb|ADO73351.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 282 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 55/109 (50%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELSL I LN +R DK T+VLSFP LGD+V++ + + +A Sbjct: 160 ELSLSLVGDRAIRRLNRTWRKKDKATDVLSFPAGELPKGTPGPRQLGDVVISIDTAKRQA 219 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G+ E+ + + HG LHLLG+DH DA M LE +L + G+ Sbjct: 220 KEYGRTMESEMARYLAHGLLHLLGHDHERTYDARKMATLEEKLLGERGM 268 >gi|95929411|ref|ZP_01312154.1| protein of unknown function UPF0054 [Desulfuromonas acetoxidans DSM 684] gi|95134527|gb|EAT16183.1| protein of unknown function UPF0054 [Desulfuromonas acetoxidans DSM 684] Length = 157 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS+V D +I+ +N +Y D PTNV+SF G +LGD+V++ + + Sbjct: 35 TELSVVIVDDDQIQEINRDYLQRDNPTNVISFAQQEGEGAGICPELLGDVVISADTAARD 94 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV--DDKDACVMEGLERSIL 159 A G F + + L+IHG LHLLGYDH ++ A ME ER + Sbjct: 95 AAEAGVPFFSEMSFLLIHGILHLLGYDHERGTEEQATEMEAKERELF 141 >gi|290985008|ref|XP_002675218.1| predicted protein [Naegleria gruberi] gi|284088813|gb|EFC42474.1| predicted protein [Naegleria gruberi] Length = 231 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 27/133 (20%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---------------- 100 ++++F + I +LN + R PT++LS+P D +LM Sbjct: 82 VTVLFCGNKYITSLNEKDRKKKGPTDILSYPVYSPDLDHNFALMEKDAAFNDDLAKLLAD 141 Query: 101 -----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 LGD+V++ I ++H+ L+ HG LHL+GYDH D D Sbjct: 142 EHKILMEEEKFLGDMVISQPYIVDYCKENNISLDHHMALLLTHGILHLMGYDHETDSDYA 201 Query: 150 VMEGLERSILEDL 162 +M+ E IL L Sbjct: 202 IMKEKEDEILSGL 214 >gi|302344831|ref|YP_003813184.1| translation metalloprotein YbeY [Prevotella melaninogenica ATCC 25845] gi|302149577|gb|ADK95839.1| translation metalloprotein YbeY [Prevotella melaninogenica ATCC 25845] Length = 142 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 14/106 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ +F D +I +N EY G D T++++F + D ++ GD+V++ + + A Sbjct: 36 EIGYMFVDDEKILEVNNEYLGHDYYTDIITFD--YDEDD----VLNGDLVISLDTVRSNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + K +E+ L +IIHG LHL G ++DK ER I+E+ Sbjct: 90 ELFKKSYEDELNRVIIHGILHLCG---INDKGPG-----EREIMEE 127 >gi|228470093|ref|ZP_04055002.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] gi|228308231|gb|EEK17086.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] Length = 150 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 + + E++ +TD I N + D T+V++FP S + GDI+++ + Sbjct: 8 MNRTVGEINFQYTDDEGILKANRAFLQHDYYTDVITFPRE--SEQEGDDAIYGDILISID 65 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 + A LG F+ L ++IHG LHLLG D Sbjct: 66 TVATNAQELGVPFKQELYRVMIHGILHLLGID 97 >gi|261878861|ref|ZP_06005288.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334540|gb|EFA45326.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 143 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 6/103 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + +F D +I +N +Y G D T++++F DG ++ GD+V++ + + A Sbjct: 37 IGYMFVDDKKILEVNNQYLGHDYYTDIITFDY----DDG--DVINGDLVISLDTVRSNAE 90 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + GK++ + L +IIHG LHL G + + +ME E L Sbjct: 91 LFGKDYADELNRVIIHGILHLCGINDKGPGEREIMEAHEEKAL 133 >gi|288801762|ref|ZP_06407204.1| metalloprotease [Prevotella melaninogenica D18] gi|288335804|gb|EFC74237.1| metalloprotease [Prevotella melaninogenica D18] Length = 143 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 14/106 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ +F D +I +N EY G D T++++F + D ++ GD+V++ + + A Sbjct: 36 EIGYMFVDDEKILEVNNEYLGHDYYTDIITFD--YDEDD----VLNGDLVISLDTVRSNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + K +E+ L +IIHG LHL G ++DK ER I+E+ Sbjct: 90 ELFKKSYEDELHRVIIHGILHLCG---INDKGPG-----EREIMEE 127 >gi|220904823|ref|YP_002480135.1| hypothetical protein Ddes_1556 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869122|gb|ACL49457.1| protein of unknown function UPF0054 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 156 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 10/104 (9%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDI 104 + G VEL L+ D + N + G PTN+LSFP S G + Sbjct: 41 APGEAQAPEGVELYLL--DDASVARANAGHLGCTGPTNILSFPGGSGSP--------GAL 90 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 +L+ + + E + G++ H V L+ HG HL G DH DA Sbjct: 91 LLSLDTLRRECLLYGQDPAEHAVRLLAHGMGHLRGLDHGPVMDA 134 >gi|224536891|ref|ZP_03677430.1| hypothetical protein BACCELL_01767 [Bacteroides cellulosilyticus DSM 14838] gi|224521479|gb|EEF90584.1| hypothetical protein BACCELL_01767 [Bacteroides cellulosilyticus DSM 14838] Length = 136 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYE 109 K+ + E++ +F +I +N +Y D T++++F D C L GD+ ++ + Sbjct: 31 KKRVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGNRLSGDLFISLD 83 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A G ++E L +IIHG LHL G + + +ME E L Sbjct: 84 TVRTNAEQFGSDYETELHRVIIHGILHLCGINDKGPGEREIMEAAENKAL 133 >gi|260061291|ref|YP_003194371.1| hypothetical protein RB2501_06820 [Robiginitalea biformata HTCC2501] gi|88785423|gb|EAR16592.1| hypothetical protein RB2501_06820 [Robiginitalea biformata HTCC2501] Length = 140 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL VF + +N +Y G D T++L+F DG S GDI ++ + I A Sbjct: 36 ELQFVFCSDDYLLEMNHKYLGHDYYTDILTFENDL--EDGVS----GDIFISIDRIRDNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 FE L ++IHG LHL+G+ +K+ +M E + L Sbjct: 90 KTYCVPFEEELARVMIHGVLHLIGFGDSTEKEKEIMRQEESACL 133 >gi|209527916|ref|ZP_03276403.1| protein of unknown function UPF0054 [Arthrospira maxima CS-328] gi|209491636|gb|EDZ92004.1| protein of unknown function UPF0054 [Arthrospira maxima CS-328] Length = 152 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 31/149 (20%) Query: 10 RLDLQIAVENALW----GDEIHLRTLCEVVFAKAVSNLISKGYFVK-----------ENI 54 ++ L++ +E+ W G+ + L L E KA++ + +F + Sbjct: 7 KVQLEVNIEDNFWWGKEGESLRLGELAE----KAIAPETWESWFCQWLQQLDPYLPPAKG 62 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF---------PTAFASSDGCSSLMLGDIV 105 ELSL TD I+ N +YR +D+ T+VLSF P S C LGDI+ Sbjct: 63 YELSLRLTDDREIQEFNAQYRQLDEATDVLSFAALETSLVMPAEHLSLHPC---YLGDII 119 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGF 134 ++ E +A G L L HG Sbjct: 120 ISVETAFRQAQQAGHNLTTELAWLTSHGL 148 >gi|307564806|ref|ZP_07627334.1| metalloprotein, YbeY family [Prevotella amnii CRIS 21A-A] gi|307346528|gb|EFN91837.1| metalloprotein, YbeY family [Prevotella amnii CRIS 21A-A] Length = 144 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 14/106 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ +F + +I +N EY D T++++F A++ + GD+V++ + + A Sbjct: 36 DIGYMFVNDEKILQINNEYLKHDYYTDIITFDYDEANT------ISGDLVISIDTVRTNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + K ++N L +IIHG LHL G ++DK ER I+ED Sbjct: 90 ELFKKTYQNELERVIIHGILHLCG---INDKGPG-----EREIMED 127 >gi|237716840|ref|ZP_04547321.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405610|ref|ZP_06082160.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229442823|gb|EEO48614.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356485|gb|EEZ05575.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|295086058|emb|CBK67581.1| conserved hypothetical protein TIGR00043 [Bacteroides xylanisolvens XB1A] Length = 139 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 37 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGDRLSGDLFISLDTIHTN 89 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +E+ L +IIHG LHL G + + +MEG E L Sbjct: 90 AEQFGTSYEDELHRVIIHGILHLCGINDKGPGEREIMEGAENKAL 134 >gi|194226355|ref|XP_001916890.1| PREDICTED: similar to Putative metalloprotease C21orf57 [Equus caballus] Length = 164 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 8/115 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI L Sbjct: 36 DLGIICVDNKNIQHINRIYREKNIPTDVLSFPFHENLKAGEIPQPDFPDDYNLGDIFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I + +++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 96 EYI-FQQCKENEDYYDILTVTATHGLCHLLGFTHSTEAEWQKMYQKEKQVLEELS 149 >gi|294644443|ref|ZP_06722206.1| metalloprotein, YbeY family [Bacteroides ovatus SD CC 2a] gi|294810438|ref|ZP_06769095.1| metalloprotein, YbeY family [Bacteroides xylanisolvens SD CC 1b] gi|292640278|gb|EFF58533.1| metalloprotein, YbeY family [Bacteroides ovatus SD CC 2a] gi|294442403|gb|EFG11213.1| metalloprotein, YbeY family [Bacteroides xylanisolvens SD CC 1b] Length = 128 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 26 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGDRLSGDLFISLDTIHTN 78 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +E+ L +IIHG LHL G + + +MEG E L Sbjct: 79 AEQFGTSYEDELHRVIIHGILHLCGINDKGPGEREIMEGAENKAL 123 >gi|116878499|ref|YP_356652.2| hypothetical protein Pcar_1233 [Pelobacter carbinolicus DSM 2380] gi|123770478|sp|Q3A575|RRMF_PELCD RecName: Full=Probable rRNA maturation factor gi|114843135|gb|ABA88482.2| conserved hypothetical protein TIGR00043 [Pelobacter carbinolicus DSM 2380] Length = 150 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 2/103 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELSL+ D I+ +N +Y DKPTNV+SF G +LGD++++ + + Sbjct: 36 AELSLLIVDDIEIQQINRDYLQRDKPTNVISFAMQEGEDVGLHPGLLGDVIISADTAARD 95 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV--DDKDACVMEGLE 155 A FE+ L L++HG LHLLGYDH ++DA ME E Sbjct: 96 AREADLPFESELYFLLLHGVLHLLGYDHERGTEEDARRMEARE 138 >gi|218961523|ref|YP_001741298.1| hypothetical protein CLOAM1232 [Candidatus Cloacamonas acidaminovorans] gi|167730180|emb|CAO81092.1| conserved hypothetical protein [Candidatus Cloacamonas acidaminovorans] Length = 154 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 13/120 (10%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---------FASSDGCSS--LM 100 E+ ++ + DS ++ N YRG+++ T++LSF TA DG S+ + Sbjct: 31 EHSYQICVKTVDSETMKHYNKRYRGLNETTDILSFITADLPACAIEERDEEDGFSAKPVR 90 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + DI++ + + + + + E ++IHG LHL+GYDH+ DA M E L+ Sbjct: 91 ICDIIIDIKRLFQQKGI--RTLEEEYRAVLIHGLLHLVGYDHIRSADAEKMNKKEEYYLK 148 >gi|323343742|ref|ZP_08083969.1| metal dependent hydrolase [Prevotella oralis ATCC 33269] gi|323095561|gb|EFZ38135.1| metal dependent hydrolase [Prevotella oralis ATCC 33269] Length = 143 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 6/104 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ +F D +I +N +Y G D T++++F +DG + + GD+V++ + + A Sbjct: 36 EIGYMFVDDAKILEVNNQYLGHDYYTDIITFDY----NDGDT--INGDLVISLDTVHSNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 K++E L +IIHG LHL G + + +ME E L Sbjct: 90 EKFNKKYEEELHRVIIHGILHLCGINDKGPGEREIMEANENKAL 133 >gi|298530259|ref|ZP_07017661.1| protein of unknown function UPF0054 [Desulfonatronospira thiodismutans ASO3-1] gi|298509633|gb|EFI33537.1| protein of unknown function UPF0054 [Desulfonatronospira thiodismutans ASO3-1] Length = 143 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L+LV TD R++ LN + PTNVL+F G LG++ ++ + + E+ Sbjct: 40 LNLVITDDSRMQHLNSAFLFCPGPTNVLAFEEESRHESG----FLGEVFISAQAVIRESI 95 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDH 142 + + H V L+ HG HL G++H Sbjct: 96 LYSQPIFEHFVRLLAHGIEHLAGFEH 121 >gi|3643597|gb|AAC42244.1| hypothetical protein [Arabidopsis thaliana] Length = 343 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 13/100 (13%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VELS++ + I LN E+RG D T+VLS + LM+GD+V++ E + Sbjct: 143 VELSVMLCNDDFICKLNKEWRGEDHATDVLSM-SQHVPELKLPVLMMGDLVISVETAARQ 201 Query: 115 ANVLGKEFENHLVHLI------------IHGFLHLLGYDH 142 A G + + L+ IHG LHLLG+DH Sbjct: 202 AAERGHTLLDEIRILVSLFADTLNVFSKIHGLLHLLGFDH 241 >gi|301767368|ref|XP_002919099.1| PREDICTED: putative metalloprotease C21orf57-like [Ailuropoda melanoleuca] Length = 164 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 10/115 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI L Sbjct: 36 DLGIICVDNKNIQHINRMYREKNIPTDVLSFPFHENIKAGELPQPDFQDDYNLGDIFLGV 95 Query: 109 EIIEIEANVLGKE-FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E I + G E + + L HG HLLG+ H + + M E+ +LE+L Sbjct: 96 EYIFQQCR--GHEDYYDILTVTATHGLCHLLGFTHSTEAEWQKMYQKEKQVLEEL 148 >gi|193216879|ref|YP_002000121.1| hypothetical protein MARTH_orf636 [Mycoplasma arthritidis 158L3-1] gi|193002202|gb|ACF07417.1| conserved hypothetical protein [Mycoplasma arthritidis 158L3-1] Length = 106 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 66 RIETLNFEYRGIDKPTNVLSFP-TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +++ LN +R + T++LSFP + L LG I+++ I+ +A + Sbjct: 4 KMKKLNRHFRNKNYVTDILSFPLEGLEELNFLEVLPLGQIIMSPWKIKKQAKEFNHSLKR 63 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ HG HL G+DH + +A +M +I+ L I Sbjct: 64 EFCYIFAHGIAHLFGFDHQTEDEAKIMNAHVDNIMNKLNI 103 >gi|83816771|ref|YP_446198.1| hypothetical protein SRU_2092 [Salinibacter ruber DSM 13855] gi|294508126|ref|YP_003572184.1| Conserved hypothetical protein containing UPF0054 [Salinibacter ruber M8] gi|123528328|sp|Q2S0T3|RRMF_SALRD RecName: Full=Probable rRNA maturation factor gi|83758165|gb|ABC46278.1| conserved hypothetical protein TIGR00043 [Salinibacter ruber DSM 13855] gi|294344454|emb|CBH25232.1| Conserved hypothetical protein containing UPF0054 [Salinibacter ruber M8] Length = 157 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 11/96 (11%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIV 105 ++ LSLV TD + LN Y D T+VLSF P++ AS +G + D+ Sbjct: 39 SLTHLSLVLTDHDTVRRLNQSYLDHDYDTDVLSFSLREGPAPSSGASGEGIEGEVYVDLD 98 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 A E + FE ++HG LHL+GYD Sbjct: 99 TAAE----RHDEFDTSFEREAYRYVVHGLLHLVGYD 130 >gi|315224153|ref|ZP_07865993.1| possible metal dependent hydrolase [Capnocytophaga ochracea F0287] gi|314945886|gb|EFS97895.1| possible metal dependent hydrolase [Capnocytophaga ochracea F0287] Length = 139 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 6/99 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++ +F D + +N EY D T++++F S+G ++ DI ++ E ++ AN Sbjct: 37 INYIFCDDEYLHKINVEYLQHDTLTDIITF----DYSEG--KVLHSDIYISVERVKENAN 90 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + F+ L+ ++ HG LHL GY +D+ +M E Sbjct: 91 IFKVPFQKELLRVLAHGLLHLCGYKDKTPEDSALMRNKE 129 >gi|34540326|ref|NP_904805.1| hypothetical protein PG0510 [Porphyromonas gingivalis W83] gi|62901349|sp|Q7MWS9|RRMF_PORGI RecName: Full=Probable rRNA maturation factor gi|34396638|gb|AAQ65704.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 151 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 29/154 (18%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 V+LPR+ +I W E+ R + KAV E+S +F D Sbjct: 11 VSLPRIRRRIV---GKWIAEVCSR------YGKAVG--------------EISYLFCDDE 47 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 I N E+ D T++++F + A + + GD++++ + + A L +E+ Sbjct: 48 YILKANQEFLDHDYYTDIITFDSCEADT------VNGDLLISLDTVRSNARALDLRYEDE 101 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L +IIHG LHL G KD M E L Sbjct: 102 LHRVIIHGILHLCGLKDKSKKDEAQMRAAEEKAL 135 >gi|256820953|ref|YP_003142232.1| hypothetical protein Coch_2127 [Capnocytophaga ochracea DSM 7271] gi|256582536|gb|ACU93671.1| protein of unknown function UPF0054 [Capnocytophaga ochracea DSM 7271] Length = 139 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 6/99 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++ +F D + +N EY D T++++F S+G ++ DI ++ E ++ AN Sbjct: 37 INYIFCDDEYLHKINVEYLQHDTLTDIITF----DYSEG--KVLHSDIYISVERVKENAN 90 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + F+ L+ ++ HG LHL GY +D+ +M E Sbjct: 91 IFKVPFQRELLRVLAHGLLHLCGYKDKTPEDSALMRNKE 129 >gi|42522997|ref|NP_968377.1| metal-dependent hydrolase, putative [Bdellovibrio bacteriovorus HD100] gi|59799115|sp|Q6MMY3|RRMF_BDEBA RecName: Full=Probable rRNA maturation factor gi|39575202|emb|CAE79370.1| metal-dependent hydrolase, putative [Bdellovibrio bacteriovorus HD100] Length = 150 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 16/111 (14%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL+LVF D + +N E+RG + T+VLSF D LG++VL E+++ ++ Sbjct: 43 ELTLVFLDKKPAQKINMEFRGKNYATDVLSF-------DSMDPGSLGELVLCPEVLKRQS 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 G ++ L ++++HG LHLLGYDH E E LE GI D Sbjct: 96 KEHGLTYQQELGYMLLHGVLHLLGYDH---------ETSEAEALEMFGIQD 137 >gi|188995326|ref|YP_001929578.1| hypothetical protein PGN_1462 [Porphyromonas gingivalis ATCC 33277] gi|238691487|sp|B2RKT6|RRMF_PORG3 RecName: Full=Probable rRNA maturation factor gi|188595006|dbj|BAG33981.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 151 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 29/154 (18%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 V+LPR+ +I W E+ R + KAV E+S +F D Sbjct: 11 VSLPRIRRRIV---GKWIAEVCSR------YGKAVG--------------EISYLFCDDE 47 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 I N E+ D T++++F + A + + GD++++ + + A L +E+ Sbjct: 48 YILKANQEFLDHDYYTDIITFDSCEADT------VNGDLLISLDTVRSNARALDLRYEDE 101 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L +IIHG LHL G KD M E L Sbjct: 102 LHRVIIHGILHLCGLKDKSKKDEAQMRAAEEEAL 135 >gi|283780308|ref|YP_003371063.1| hypothetical protein Psta_2534 [Pirellula staleyi DSM 6068] gi|283438761|gb|ADB17203.1| protein of unknown function UPF0054 [Pirellula staleyi DSM 6068] Length = 143 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 5/110 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+S+ D + LN +Y D T+ LSF F + G+++++ + E Sbjct: 36 AEISVAVVDGDEMHQLNRQYLQHDYTTDCLSFVLDFEDDH-----LEGEVIVSADYAAQE 90 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + G E+ L+ +IH LHL+G+D ++ D M E+ IL G+ Sbjct: 91 SLQYGWRMEDELLLYVIHASLHLIGHDDHEESDIAKMREAEKQILAQFGL 140 >gi|298207257|ref|YP_003715436.1| hypothetical protein CA2559_03360 [Croceibacter atlanticus HTCC2559] gi|83849893|gb|EAP87761.1| hypothetical protein CA2559_03360 [Croceibacter atlanticus HTCC2559] Length = 138 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 6/109 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 +N+ E++ +F D + ++N +Y D T+++SF T+ + + GDI ++ E I Sbjct: 30 KNLGEINYIFCDDAYLLSINQQYLDHDTYTDIISFDTSEGND------LSGDIFISVERI 83 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + A ++ L +++HG LH GY D +A +M E L+ Sbjct: 84 QENAQQFNVSVDDELKRVLVHGILHFCGYKDKTDDEAKLMREKEDEKLK 132 >gi|34785713|gb|AAH57308.1| RIKEN cDNA A130042E20 gene [Mus musculus] Length = 164 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSF F LGDI L Sbjct: 36 DLGIICVDNKTIQNINRIYRNKNVPTDVLSFSFHENLKAGEFPQPHSPDDYNLGDIFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I ++ +++ + L HG HLLG+ H + M E+ +LEDL Sbjct: 96 EYI-LQHCRESEDYCDVLTVTATHGLCHLLGFTHSSKAEWQKMYNQEKLVLEDLS 149 >gi|325859868|ref|ZP_08172998.1| translation metalloprotein YbeY [Prevotella denticola CRIS 18C-A] gi|327312920|ref|YP_004328357.1| translation metalloprotein YbeY [Prevotella denticola F0289] gi|325482794|gb|EGC85797.1| translation metalloprotein YbeY [Prevotella denticola CRIS 18C-A] gi|326946199|gb|AEA22084.1| translation metalloprotein YbeY [Prevotella denticola F0289] Length = 139 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 + E+ +F +I +N EY G D T++++F + ++ GD+V++ + + Sbjct: 34 VGEIGYMFVGDEKILEINNEYLGHDYYTDIITFDYDEGN------VLNGDLVISLDTVRS 87 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A + K +E+ L +IIHG LHL G + + +ME E LE Sbjct: 88 NAELFHKSYEDELNRVIIHGILHLCGINDKGPGEREIMEENENKALE 134 >gi|237720597|ref|ZP_04551078.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229450348|gb|EEO56139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 139 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 37 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGDRLSGDLFISLDTIRTN 89 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +E+ L +IIHG LHL G + + VME E L Sbjct: 90 AEQFGASYEDELHRVIIHGILHLCGINDKGPGEREVMEAAENQAL 134 >gi|296126703|ref|YP_003633955.1| hypothetical protein Bmur_1670 [Brachyspira murdochii DSM 12563] gi|296018519|gb|ADG71756.1| protein of unknown function UPF0054 [Brachyspira murdochii DSM 12563] Length = 145 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 10/101 (9%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++L+F D I+ LN ++R +K T+VL+FP +G GDIV++YE ++ Sbjct: 34 DVNLLFCDDEYIKKLNNDFRNKNKATDVLTFPMG-DDDEG------GDIVISYEWVKNRY 86 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + + + ++ LIIH LHL G H K +ME E+ Sbjct: 87 S--EDKIKKTVLKLIIHSILHLKGIHHNYSK-KSLMENNEK 124 >gi|293373384|ref|ZP_06619740.1| metalloprotein, YbeY family [Bacteroides ovatus SD CMC 3f] gi|292631670|gb|EFF50292.1| metalloprotein, YbeY family [Bacteroides ovatus SD CMC 3f] Length = 128 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 26 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGDRLSGDLFISLDTIRTN 78 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +E+ L +IIHG LHL G + + VME E L Sbjct: 79 AEQFGASYEDELHRVIIHGILHLCGINDKGPGEREVMEAAENQAL 123 >gi|255690276|ref|ZP_05413951.1| putative metalloprotease [Bacteroides finegoldii DSM 17565] gi|260624179|gb|EEX47050.1| putative metalloprotease [Bacteroides finegoldii DSM 17565] Length = 139 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 37 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGDRLSGDLFISLDTIRTN 89 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G ++N L +IIHG LHL G + + +ME E L Sbjct: 90 AEQFGASYDNELHRVIIHGILHLCGINDKGPGEREIMEAAENKAL 134 >gi|299145303|ref|ZP_07038371.1| putative metalloprotease [Bacteroides sp. 3_1_23] gi|298515794|gb|EFI39675.1| putative metalloprotease [Bacteroides sp. 3_1_23] Length = 139 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 37 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGDRLSGDLFISLDTIRTN 89 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +E+ L +IIHG LHL G + + VME E L Sbjct: 90 AEQFGASYEDELHRVIIHGILHLCGINDKGPGEREVMEAAENQAL 134 >gi|126662720|ref|ZP_01733719.1| hypothetical protein FBBAL38_05175 [Flavobacteria bacterium BAL38] gi|126626099|gb|EAZ96788.1| hypothetical protein FBBAL38_05175 [Flavobacteria bacterium BAL38] Length = 139 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +F + + +N EY D T+++SF +L+ GDI ++ E ++ A Sbjct: 35 EINYIFCNDEYLHKINVEYLDHDTLTDIISFDYT------VGNLVQGDIFISIERVQDNA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 N F+ L ++ HG LH GY KD +M E ++ Sbjct: 89 NDFNVSFDEELKRVLSHGVLHYCGYKDKTPKDEALMRSKEEEKMQ 133 >gi|160882931|ref|ZP_02063934.1| hypothetical protein BACOVA_00893 [Bacteroides ovatus ATCC 8483] gi|260172638|ref|ZP_05759050.1| hypothetical protein BacD2_12296 [Bacteroides sp. D2] gi|315920928|ref|ZP_07917168.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156111614|gb|EDO13359.1| hypothetical protein BACOVA_00893 [Bacteroides ovatus ATCC 8483] gi|313694803|gb|EFS31638.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 138 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 37 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGDRLSGDLFISLDTIRTN 89 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +E+ L +IIHG LHL G + + VME E L Sbjct: 90 AEQFGASYEDELHRVIIHGILHLCGINDKGPGEREVMEAAENKAL 134 >gi|289704493|ref|ZP_06500929.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] gi|289705007|ref|ZP_06501420.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] gi|289558266|gb|EFD51544.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] gi|289558785|gb|EFD52040.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] Length = 157 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 4/117 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEII 111 E ++ D+ R+ L+ E+ + PT+V+S P S + + +LGD+VL E+ Sbjct: 35 AETAVTVVDAARMAELHEEWMDLPGPTDVMSLPMDELTPGSPEAPAEGVLGDVVLCPEVA 94 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE-RSILEDLGINDP 167 +A G ++ L+ L+ HG LHLLGYDH++D D M GL+ R + E LG P Sbjct: 95 AEQAARGGHSRDDELLLLLTHGMLHLLGYDHLEDADREEMFGLQDRLVSEVLGRPAP 151 >gi|147899075|ref|NP_001087112.1| ybeY metallopeptidase (putative) [Xenopus laevis] gi|50604012|gb|AAH78000.1| MGC82413 protein [Xenopus laevis] Length = 165 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAY 108 +L ++ ++ RI+ +N YRG D T+VLSF P+ LGDI L Sbjct: 36 DLGIICVNNARIQHINRVYRGQDSVTDVLSFPFHEDLNPSLLPIPATPDEYNLGDIYLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I + +++ + L +HG HLLG+ H + + M E IL ++ Sbjct: 96 AFIYEQCQKTQEDYRSILTITAVHGLCHLLGHKHNNPEKWKQMFEKETEILNEIN 150 >gi|198274088|ref|ZP_03206620.1| hypothetical protein BACPLE_00225 [Bacteroides plebeius DSM 17135] gi|198273166|gb|EDY97435.1| hypothetical protein BACPLE_00225 [Bacteroides plebeius DSM 17135] Length = 140 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 14/128 (10%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + KAV+ K + E++ +F +I +N +Y D T++++F Sbjct: 20 TAWIKAVAETYGK------KVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF------- 66 Query: 94 DGCSSLML-GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 D C L GD+ ++ + + A +E L +IIHG LHL G + + +ME Sbjct: 67 DYCEGKKLSGDLFISLDTVRTNAEQFDAAYETELYRVIIHGILHLCGINDKGPGEREIME 126 Query: 153 GLERSILE 160 E LE Sbjct: 127 AAENKALE 134 >gi|153807201|ref|ZP_01959869.1| hypothetical protein BACCAC_01479 [Bacteroides caccae ATCC 43185] gi|149130321|gb|EDM21531.1| hypothetical protein BACCAC_01479 [Bacteroides caccae ATCC 43185] Length = 138 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 16/136 (11%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI R E + A A S + + E++ +F +I +N +Y D T+++ Sbjct: 14 EIKKRETTEWIKAVAAS--------YGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDII 65 Query: 85 SFPTAFASSDGCSSLML-GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +F D C L GD+ ++ + + A G ++N L +IIHG LHL G + Sbjct: 66 TF-------DYCEGDRLSGDLFISLDTVRTNAEQFGASYDNELHRVIIHGILHLCGINDK 118 Query: 144 DDKDACVMEGLERSIL 159 + +ME E L Sbjct: 119 GPGEREIMEAAENKAL 134 >gi|325268276|ref|ZP_08134909.1| metal dependent hydrolase [Prevotella multiformis DSM 16608] gi|324989418|gb|EGC21368.1| metal dependent hydrolase [Prevotella multiformis DSM 16608] Length = 139 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 14/108 (12%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 I E+ +F +I +N EY G D T++++F + ++ GD+V++ + + Sbjct: 34 IGEIGYMFVGDEKILEINNEYLGHDYYTDIITFDYDEGN------VLNGDLVISLDTVRS 87 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 A + K +E+ L +IIHG LHL G ++DK ER I+E+ Sbjct: 88 NAELFHKSYEDELNRVIIHGILHLCG---INDKGPG-----EREIMEE 127 >gi|149199105|ref|ZP_01876145.1| hypothetical protein LNTAR_24389 [Lentisphaera araneosa HTCC2155] gi|149137894|gb|EDM26307.1| hypothetical protein LNTAR_24389 [Lentisphaera araneosa HTCC2155] Length = 160 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 8/137 (5%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--- 86 TL E + ++ + + + + L++ FTD IE +N ++ + T+V+SF Sbjct: 13 TLAETKHIEDIALYLCDHWGLSKKHCSLNISFTDDAGIEPVNVQFLQHEGATDVISFDYL 72 Query: 87 ---PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 FA D +LG+++++ E + +A F + + + HG LHL G+D Sbjct: 73 DDYEEEFADED--DPFVLGELLISLETAQSQAQTYDSSFNDEALLYVAHGILHLCGFDDH 130 Query: 144 DDKDACVMEGLERSILE 160 + D M E ++ Sbjct: 131 QEDDIKAMRDAEAQSMK 147 >gi|189460233|ref|ZP_03009018.1| hypothetical protein BACCOP_00870 [Bacteroides coprocola DSM 17136] gi|189433094|gb|EDV02079.1| hypothetical protein BACCOP_00870 [Bacteroides coprocola DSM 17136] Length = 140 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 14/128 (10%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + KAV+ K + E++ +F +I +N +Y D T++++F Sbjct: 20 TAWIKAVAETYGK------KVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF------- 66 Query: 94 DGC-SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 D C + + GD+ ++ + + A G +E L +IIHG LHL G + + +ME Sbjct: 67 DYCEGNRIAGDLFISLDTVRTNAEQFGATYETELHRVIIHGILHLCGINDKGPGEREIME 126 Query: 153 GLERSILE 160 E L+ Sbjct: 127 AAENKALD 134 >gi|46446688|ref|YP_008053.1| hypothetical protein pc1054 [Candidatus Protochlamydia amoebophila UWE25] gi|62901435|sp|Q6MCC1|RRMF_PARUW RecName: Full=Probable rRNA maturation factor gi|46400329|emb|CAF23778.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 150 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 36 FAKAVSNLISKGYFVKENIV--ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 F+ A + I K KE E+++ F D+ I L+ +Y D PT+ +SFP Sbjct: 16 FSLANLDAIVKEVIQKEQQTCDEVNIYFVDTATICKLHLDYFNDDTPTDCISFP--MDKD 73 Query: 94 DGCSSLMLGDI-VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + +LG+I V IE + +E ++L+ HG LHL+GYD +++ D +M+ Sbjct: 74 ENSPYKILGEIFVCPQTAIEYALSHELDPYEETTLYLV-HGLLHLMGYDDLEENDFLIMK 132 Query: 153 GLE 155 E Sbjct: 133 EAE 135 >gi|150024116|ref|YP_001294942.1| hypothetical protein FP0002 [Flavobacterium psychrophilum JIP02/86] gi|172048599|sp|A6GVJ9|RRMF_FLAPJ RecName: Full=Probable rRNA maturation factor gi|149770657|emb|CAL42121.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 140 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +F D + + +N +Y D T+V+SF + + GDI ++ E + A Sbjct: 35 EINYIFCDDNYLLEINQQYLNHDTLTDVISFDYSLGDE------IHGDIYISIERVRENA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + FE L ++IHG LH GY D D +M E Sbjct: 89 DDFKVPFEEELKRVMIHGVLHYCGYKDKSDADELLMRSKE 128 >gi|229495498|ref|ZP_04389231.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229317481|gb|EEN83381.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 152 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 13/120 (10%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 HLR + + V+N + K + ELS FT+ I N + D T++L+F Sbjct: 15 HLRRQIIARWIRQVANEMGK------TLGELSYKFTNDAGILEANKLFLNHDYYTDILTF 68 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 AS +G S + GDI+++ E + A G +E L ++IHG LHL G +DDK Sbjct: 69 D---ASQEG-SEYISGDILISLETVASNAEKFGVPYEEELHRVLIHGVLHLSG---IDDK 121 >gi|293977768|ref|YP_003543198.1| hypothetical protein DMIN_00240 [Candidatus Sulcia muelleri DMIN] gi|292667699|gb|ADE35334.1| conserved hypothetical protein TIGR00043 [Candidatus Sulcia muelleri DMIN] Length = 141 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 15/139 (10%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN--IVELSLVFTDSHRIETLNFEYRG 76 N + + HL E F+K + ++SK EN I EL+ +F D + +N +Y Sbjct: 3 NYYYETKFHLYN--EFYFSKWIFFVVSK-----ENKFIKELNFIFCDDQYLININNKYLN 55 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 + T+V++F + + + GDI ++ + I+ + L K F + L +IIH LH Sbjct: 56 KNYYTDVITFDNSEEKN------LDGDIFISIKRIKYNSLKLKKLFYDELKRVIIHAVLH 109 Query: 137 LLGYDHVDDKDACVMEGLE 155 L+GY + + +M E Sbjct: 110 LIGYKDKKETEKYIMSKKE 128 >gi|213027667|ref|ZP_03342114.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161077|ref|ZP_03346787.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213583243|ref|ZP_03365069.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 85 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 41/86 (47%), Gaps = 11/86 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A EN H E F + + +I + F +E V + LV D L Sbjct: 6 LDLQLACEN-------HAGLPDEAQFQRWLDGVIPQ--FQEEAEVTIRLV--DEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC 96 N YRG DKPTNVLSFP + C Sbjct: 55 NLTYRGKDKPTNVLSFPFEAPPALKC 80 >gi|194246695|ref|YP_002004334.1| hypothetical protein ATP_00301 [Candidatus Phytoplasma mali] gi|254801600|sp|B3QZV1|RRMF_PHYMT RecName: Full=Probable rRNA maturation factor gi|193807052|emb|CAP18488.1| conserved hypothetical protein [Candidatus Phytoplasma mali] Length = 148 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 9/118 (7%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +IH +T + K ++ ++ K +F + ++F +++ +NF YR D T+VL Sbjct: 4 KIHNKTNISI---KYLTKILKKIFFFVPERQNIHIIFITPLKMKKMNFYYRQKDYDTDVL 60 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 SF LGDI + + + ++ + L HG+LHL GY+H Sbjct: 61 SFINEIDKDS------LGDIFINLKKAQKQSQNYNHSLSREVCFLATHGYLHLKGYEH 112 >gi|224023519|ref|ZP_03641885.1| hypothetical protein BACCOPRO_00221 [Bacteroides coprophilus DSM 18228] gi|224016741|gb|EEF74753.1| hypothetical protein BACCOPRO_00221 [Bacteroides coprophilus DSM 18228] Length = 140 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 14/130 (10%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + KAV+ K + E++ +F +I +N +Y D T++++F D Sbjct: 21 AWIKAVAETYGK------KVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------D 67 Query: 95 GC-SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 C + + GD+ ++ + + A G +E L +IIHG LHL G + + +ME Sbjct: 68 YCEGNRISGDLFISLDTVRTNAEQFGATYETELHRVIIHGILHLCGINDKGPGEREIMEA 127 Query: 154 LERSILEDLG 163 E L+ L Sbjct: 128 AENRALDMLA 137 >gi|188585826|ref|YP_001917371.1| protein of unknown function UPF0054 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350513|gb|ACB84783.1| protein of unknown function UPF0054 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 141 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 7/117 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEII 111 E+ L+ D+ I+ LN +YR K T+VLSFP D L+LGDIV++ + Sbjct: 23 EVGLMIVDAETIKELNRDYRNQYKSTDVLSFPQYQEDDLVERDSDDYLLLGDIVISESAV 82 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG---LERSILEDLGIN 165 +A+ G E L L +HG LHLLGYDH ++ E L+ IL LGI Sbjct: 83 LDQADKYGHSIERELAFLFLHGLLHLLGYDHEKEEAQSEEESMFVLQEEILSSLGIT 139 >gi|311695360|gb|ADP98233.1| predicted metal-dependent hydrolase [marine bacterium HP15] Length = 44 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/37 (54%), Positives = 27/37 (72%) Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LHL G+DH++D+DA VME LE +L LG +PYE + Sbjct: 2 LHLQGFDHIEDEDAEVMEALEVRLLAQLGFGNPYEAE 38 >gi|213962456|ref|ZP_03390718.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213954782|gb|EEB66102.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 139 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++ +F D + +N EY D T++++F ++ DI ++ E ++ A Sbjct: 37 INYIFCDDEYLHKINVEYLQHDTLTDIITFDYT------EEKVLHSDIYISVERVKENAE 90 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + F+ L+ ++ HG LHL GY KD+ +M E ++ Sbjct: 91 IFKVPFQRELLRVLAHGLLHLCGYKDKTPKDSALMRQKEEEMM 133 >gi|242279255|ref|YP_002991384.1| hypothetical protein Desal_1783 [Desulfovibrio salexigens DSM 2638] gi|242122149|gb|ACS79845.1| protein of unknown function UPF0054 [Desulfovibrio salexigens DSM 2638] Length = 151 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I +N E+ G PTNVLSFP + + D + LG+IVL+ + + E + G++ E H Sbjct: 50 IAEVNEEFLGCVGPTNVLSFPFS-ETPDLEKNSFLGEIVLSVDTLARETRLYGQQPEEHT 108 Query: 127 VHLIIHGFLHLLGYDH 142 V L+ H LHL GYDH Sbjct: 109 VRLLAHALLHLAGYDH 124 >gi|225010333|ref|ZP_03700805.1| protein of unknown function UPF0054 [Flavobacteria bacterium MS024-3C] gi|225005812|gb|EEG43762.1| protein of unknown function UPF0054 [Flavobacteria bacterium MS024-3C] Length = 148 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 10/111 (9%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDI 104 S+GY ++ LS +F + + LN Y D T++++F +G +++ GDI Sbjct: 37 SEGY----SVAALSYIFCNDQYLLELNQSYLSHDTFTDIITFDYV----EG--TIISGDI 86 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 ++ + +E A + FE + ++ HG LHL+GY +D VM E Sbjct: 87 FISVDRLEENAAIFKVSFEEERLRVMAHGLLHLMGYKDKSAEDQLVMSNKE 137 >gi|222151469|ref|YP_002560625.1| hypothetical protein MCCL_1222 [Macrococcus caseolyticus JCSC5402] gi|254799990|sp|B9E6W1|RRMF_MACCJ RecName: Full=Probable rRNA maturation factor gi|222120594|dbj|BAH17929.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 154 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEII 111 E+++ F D + I+ +N YR D T+V+SF D +LGDI++ + Sbjct: 38 AEVAVSFVDENEIQAINKAYRNKDAVTDVISFALEEGEDDFEMSDEPRVLGDIIICVKRA 97 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G FE L L +HG LHLLGYDH+++ D M G + IL G+ Sbjct: 98 LEQAEEYGHSFERELGFLSLHGLLHLLGYDHMNESDEARMFGRQDEILNAFGL 150 >gi|154249670|ref|YP_001410495.1| hypothetical protein Fnod_0988 [Fervidobacterium nodosum Rt17-B1] gi|154153606|gb|ABS60838.1| protein of unknown function UPF0054 [Fervidobacterium nodosum Rt17-B1] Length = 147 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 V++S +F + +N +YRG D T+VL+F + ++ + L E I Sbjct: 33 VDVSFIFITPETMAEMNKQYRGKDGATDVLTF--VYGNNAEGEEEPYSEGYLCLEKILEN 90 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + G E L+ +++H LH+ GYDH Sbjct: 91 SKEFGNSLEKELLTVLVHSILHMAGYDH 118 >gi|325105734|ref|YP_004275388.1| protein of unknown function UPF0054 [Pedobacter saltans DSM 12145] gi|324974582|gb|ADY53566.1| protein of unknown function UPF0054 [Pedobacter saltans DSM 12145] Length = 145 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 5/101 (4%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K+ + EL+ + + +N EY D T++++F + +G ++ GD+ ++ E Sbjct: 35 KKELQELNFILCSDEYLLKINQEYLNHDTYTDIITFDNS--EDEG---MIYGDVFISIER 89 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 ++ A + G + + L +IIHG LHLLGY ++ +M Sbjct: 90 VKENARIFGVKTADELHRVIIHGTLHLLGYPDKKKQEKALM 130 >gi|54607131|ref|NP_766138.3| rRNA maturation factor homolog [Mus musculus] gi|47115797|sp|Q8CAV0|YBEY_MOUSE RecName: Full=rRNA maturation factor homolog gi|26332258|dbj|BAC29859.1| unnamed protein product [Mus musculus] gi|74202099|dbj|BAE23037.1| unnamed protein product [Mus musculus] gi|148699903|gb|EDL31850.1| RIKEN cDNA A130042E20 [Mus musculus] Length = 164 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSF F LGDI L Sbjct: 36 DLGIICVDNKTIQNINRIYRNKNVPTDVLSFSFHENLKAGEFPQPHSPDDYNLGDIFLGV 95 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I ++ +++ + L HG HLLG+ H + M E+ +LE+L Sbjct: 96 EYI-LQHCRESEDYCDVLTVTATHGLCHLLGFTHSSKAEWQKMYNQEKLVLEELS 149 >gi|294675104|ref|YP_003575720.1| hypothetical protein PRU_2470 [Prevotella ruminicola 23] gi|294471648|gb|ADE81037.1| conserved hypothetical protein TIGR00043 [Prevotella ruminicola 23] Length = 140 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEI 110 + + E+ +F + +I +N ++ G D T++++F D C + GDI ++ + Sbjct: 32 KKVGEIGYLFVNDEKILEVNNQFLGHDYYTDIITF-------DYCEGKTISGDIYISVDT 84 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A+ G+ ++ L +IIHG LHL G + + +ME E L Sbjct: 85 VFTNADKFGRPYDEELHRVIIHGILHLCGINDKGPGEREIMEAAEDKAL 133 >gi|119357533|ref|YP_912177.1| hypothetical protein Cpha266_1736 [Chlorobium phaeobacteroides DSM 266] gi|145572761|sp|A1BH76|RRMF_CHLPD RecName: Full=Probable rRNA maturation factor gi|119354882|gb|ABL65753.1| protein of unknown function UPF0054 [Chlorobium phaeobacteroides DSM 266] Length = 142 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 9/127 (7%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L E V + V+ ++ + F+ E++V V+ + I +N E+ G D PT+ ++F Sbjct: 13 RELAESVLTEVVTTVLQEEGFLIESLV---AVYCGNKMIHRINREFLGHDYPTDTITFSY 69 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + S + G+ ++ + +E A F+ L+ + IH LHL GY D++ Sbjct: 70 SKGSE------IDGEFYISLDAVEENALRYKVGFDEELMRVTIHSALHLAGYQDGKDEER 123 Query: 149 CVMEGLE 155 M+ E Sbjct: 124 VQMQEKE 130 >gi|297568434|ref|YP_003689778.1| pyridoxal phosphate biosynthetic protein PdxJ [Desulfurivibrio alkaliphilus AHT2] gi|296924349|gb|ADH85159.1| pyridoxal phosphate biosynthetic protein PdxJ [Desulfurivibrio alkaliphilus AHT2] Length = 398 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEI 113 ELSL+ D +++ N +R ++PTNVL+F A G MLGD+V++ + Sbjct: 37 ELSLLLVDDRQMQEFNHLFRQRNRPTNVLAFAQREAPEIPGGLGDEMLGDVVISLDTARR 96 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH 142 EA G + L L+ HG LHLLGYDH Sbjct: 97 EARAAGVSPGHRLAWLLTHGLLHLLGYDH 125 >gi|213029864|ref|ZP_03344311.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 43 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 24/34 (70%) Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLLGYDH+DD +A ME LE I+ +G DPY Sbjct: 3 LHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPY 36 >gi|86134802|ref|ZP_01053384.1| uncharacterized protein family UPF0054 [Polaribacter sp. MED152] gi|85821665|gb|EAQ42812.1| uncharacterized protein family UPF0054 [Polaribacter sp. MED152] Length = 137 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 11/109 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +F D + LN ++ D T+++SF + L+ GDI ++ E ++ A Sbjct: 35 EINYIFCDDAYLHKLNVKFLNHDTLTDIISFDNSLGK------LLNGDIFISVERVKDNA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + F L ++IHG LH +GY KD E E E+L I Sbjct: 89 DDFKVSFHEELHRVMIHGILHYMGY-----KDKSEDEKKEMRKQENLAI 132 >gi|161833656|ref|YP_001597852.1| hypothetical protein SMGWSS_025 [Candidatus Sulcia muelleri GWSS] gi|172048393|sp|A8Z5Q5|RRMF_SULMW RecName: Full=Probable rRNA maturation factor gi|152206145|gb|ABS30455.1| conserved hypothetical protein SMGWSS_025 [Candidatus Sulcia muelleri GWSS] Length = 141 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 15/139 (10%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN--IVELSLVFTDSHRIETLNFEYRG 76 N + + HL E F+K + ++SK EN I EL+ +F D + +N +Y Sbjct: 3 NYYYETKFHLYN--EFYFSKWIFFVVSK-----ENKFIKELNFIFCDDQYLININNKYLN 55 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 + T+V++F S D + GDI ++ + I+ + K F + L +IIH LH Sbjct: 56 KNYYTDVITFDN---SEDKN---LDGDIFISIKRIKYNSLKFKKLFYDELKRVIIHAVLH 109 Query: 137 LLGYDHVDDKDACVMEGLE 155 L+GY + + +M E Sbjct: 110 LIGYKDKKETEKYIMSKKE 128 >gi|153005571|ref|YP_001379896.1| hypothetical protein Anae109_2711 [Anaeromyxobacter sp. Fw109-5] gi|166228436|sp|A7HDW6|RRMF_ANADF RecName: Full=Probable rRNA maturation factor gi|152029144|gb|ABS26912.1| protein of unknown function UPF0054 [Anaeromyxobacter sp. Fw109-5] Length = 192 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+S++ RI LN E+RG D T+VLSFP + G +LGD+V++ + Sbjct: 35 AEISILLVGDRRIRALNREWRGKDAATDVLSFPLSEPPGSGP---LLGDVVISLDTAARR 91 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 A + L + HG LHLLGYDH DA M Sbjct: 92 ARQERRAVGAELDRYLAHGLLHLLGYDHERPADARRM 128 >gi|332879991|ref|ZP_08447675.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681987|gb|EGJ54900.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 138 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + I +++ +F D + +N +Y D T++++F ++G + + DI ++ E + Sbjct: 32 KKIGDINYIFCDDVYLHKINVQYLQHDTLTDIITFD----YTEGIT--LNSDIYISIERV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 A++ G FE L+ ++ HG LHL GY D+ +M E Sbjct: 86 RENADIFGVTFEQELLRVLAHGILHLCGYKDKTPADSELMRAKE 129 >gi|301107293|ref|XP_002902729.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262098603|gb|EEY56655.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 136 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAYEII 111 ++ TD+H ++ LN +R DKPT++LSF P F LGDI ++ + Sbjct: 46 MLTTDTH-VQKLNRRFRKKDKPTDILSFPFHKVRAPGRFPRIRAREERYLGDIYISPAYV 104 Query: 112 EIEANVLGKE----FENHLVHLIIHGFLHLLG 139 + + E E L L+ HG HLLG Sbjct: 105 QRQCEDPQLEEITTLEERLPVLMAHGLCHLLG 136 >gi|189464937|ref|ZP_03013722.1| hypothetical protein BACINT_01281 [Bacteroides intestinalis DSM 17393] gi|189437211|gb|EDV06196.1| hypothetical protein BACINT_01281 [Bacteroides intestinalis DSM 17393] Length = 136 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYE 109 ++ + E++ +F +I +N Y D T++++F D C L GD+ ++ + Sbjct: 31 EKRVGEIAYIFCSDEKILEVNRHYLQHDYYTDIITF-------DYCEGNRLSGDLFISLD 83 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A G ++E L +IIHG LHL G + + +ME E L Sbjct: 84 TVRTNAEQFGSDYETELHRVIIHGILHLCGINDKGPGEREIMEEAENRAL 133 >gi|167737213|ref|ZP_02409987.1| hypothetical protein Bpse14_04056 [Burkholderia pseudomallei 14] Length = 231 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 121 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 172 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F A + + + D+VL ++E EA GK H H Sbjct: 173 ALNHSYRHKDYATNVLTF----AYGEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 228 Query: 129 LII 131 L++ Sbjct: 229 LLV 231 >gi|313813039|gb|EFS50753.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL025PA1] gi|327330796|gb|EGE72542.1| putative metalloprotease [Propionibacterium acnes HL097PA1] Length = 155 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 4/100 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEII 111 ELS++ D +E + ++ G+ PT+VLSFP A + S +LGDIVL + Sbjct: 35 ELSIILVDEETMEAYHEKFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVT 94 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +A G+ + +L+IHG LHLLGYDH + + VM Sbjct: 95 ARQAAENGRTPDGEAEYLLIHGLLHLLGYDHAEPGEKRVM 134 >gi|189499926|ref|YP_001959396.1| hypothetical protein Cphamn1_0971 [Chlorobium phaeobacteroides BS1] gi|238692296|sp|B3EPY3|RRMF_CHLPB RecName: Full=Probable rRNA maturation factor gi|189495367|gb|ACE03915.1| protein of unknown function UPF0054 [Chlorobium phaeobacteroides BS1] Length = 138 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R + E + + ++I FV + +V VF I+ +N E+ G D T+ ++F Sbjct: 11 RVIPEEKLERVIRHVIEAEGFVPDVVV---AVFCGDRLIQRINREHLGHDYATDTITFRY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G+ ++ ++I+ + FEN L + IH LHL GYD D+ Sbjct: 68 ------NSGREIEGEFYVSLDVIDKNSRRFKTGFENELFRVAIHSALHLAGYDDSGDEAR 121 Query: 149 CVMEGLERSILEDL 162 M+ E L L Sbjct: 122 AGMKKREDRYLSQL 135 >gi|29348692|ref|NP_812195.1| hypothetical protein BT_3283 [Bacteroides thetaiotaomicron VPI-5482] gi|62901447|sp|Q8A2M2|RRMF_BACTN RecName: Full=Probable rRNA maturation factor gi|29340597|gb|AAO78389.1| conserved hypothetical protein with conserved domain [Bacteroides thetaiotaomicron VPI-5482] Length = 137 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 37 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCQGDRLSGDLFISLDTIRTN 89 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +++ L +IIHG LHL G + + +ME E L Sbjct: 90 AEQFGAAYDDELHRVIIHGILHLCGINDKGPGEREIMEEAENKAL 134 >gi|298387060|ref|ZP_06996614.1| metalloprotease [Bacteroides sp. 1_1_14] gi|298260210|gb|EFI03080.1| metalloprotease [Bacteroides sp. 1_1_14] Length = 137 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 18/108 (16%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 37 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCQGDRLSGDLFISLDTIRTN 89 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL-ERSILED 161 A G +++ L +IIHG LHL G ++DK GL ER I+E+ Sbjct: 90 AEQFGAAYDDELHRVIIHGILHLCG---INDK------GLGEREIMEE 128 >gi|145219509|ref|YP_001130218.1| hypothetical protein Cvib_0701 [Prosthecochloris vibrioformis DSM 265] gi|189040581|sp|A4SE07|RRMF_PROVI RecName: Full=Probable rRNA maturation factor gi|145205673|gb|ABP36716.1| protein of unknown function UPF0054 [Chlorobium phaeovibrioides DSM 265] Length = 148 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L E KAV ++S+ V + ++ + +N E+ G D T+ ++FP Sbjct: 11 RALPEAKLKKAVRLVLSE---EGGKAVSIDAIYCGGRMMRRINREFLGHDYDTDTVTFPY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 S+G ++ G+ ++ + + A FE L+ + IH LHLLGYD ++ Sbjct: 68 ----SEGL--VVEGEFYVSLDEVGRNAVRFKSGFEQELLRVTIHSVLHLLGYDDASPEER 121 Query: 149 CVMEGLERSILEDLG 163 M E L LG Sbjct: 122 GRMRQKEDRYLRILG 136 >gi|304383689|ref|ZP_07366148.1| possible metal dependent hydrolase [Prevotella marshii DSM 16973] gi|304335213|gb|EFM01484.1| possible metal dependent hydrolase [Prevotella marshii DSM 16973] Length = 140 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-SSLMLGDIVLAYEIIEIE 114 ++ +F + ++I +N ++ D T+V++F D C + + GDIV++ + + Sbjct: 38 DIGYMFVNDNKILEINRQFLQHDYYTDVITF-------DDCDGNTINGDIVISLDTVRSN 90 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A + GK + L +IIHG LHL G + + +ME E L Sbjct: 91 AKLYGKPYGEELHRVIIHGILHLCGLNDKGPGERELMEAAEDRAL 135 >gi|332884625|gb|EGK04882.1| metalloprotease [Dysgonomonas mossii DSM 22836] Length = 139 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 6/88 (6%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + ++S VF +I +N +Y D T++++F + +D ++ GDI ++ + + Sbjct: 33 KQVGDISFVFCSDKKILEVNNQYLQHDYYTDIITFD--YTEND----IISGDIFISVDTV 86 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLG 139 + + G +E L +IIHG LHL G Sbjct: 87 KSNSETFGTNYEEELNRIIIHGILHLCG 114 >gi|167764038|ref|ZP_02436165.1| hypothetical protein BACSTE_02421 [Bacteroides stercoris ATCC 43183] gi|167698154|gb|EDS14733.1| hypothetical protein BACSTE_02421 [Bacteroides stercoris ATCC 43183] Length = 137 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEI 110 + I E++ +F +I +N +Y D T++++F D C L GD+ ++ + Sbjct: 32 KRIGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGNRLSGDLFISLDT 84 Query: 111 IEIEA-NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A G ++E L +IIHG LHL G + + +ME E L Sbjct: 85 VRTNAEQFAGNDYERELYRVIIHGILHLCGINDKGPGEREIMEAAENKAL 134 >gi|53711447|ref|YP_097439.1| hypothetical protein BF0156 [Bacteroides fragilis YCH46] gi|60679714|ref|YP_209858.1| hypothetical protein BF0118 [Bacteroides fragilis NCTC 9343] gi|253564495|ref|ZP_04841952.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764843|ref|ZP_06093118.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|62901265|sp|Q650C1|RRMF_BACFR RecName: Full=Probable rRNA maturation factor gi|81317213|sp|Q5LIY0|RRMF_BACFN RecName: Full=Probable rRNA maturation factor gi|52214312|dbj|BAD46905.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491148|emb|CAH05896.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251948271|gb|EES88553.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263254227|gb|EEZ25661.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301161178|emb|CBW20716.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 139 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 8/110 (7%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYE 109 ++ I E++ +F +I +N +Y D T++++F D C L GD+ ++ E Sbjct: 32 EKRIGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGNRLSGDLFISLE 84 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ + +E L IIHG LHL G + + +ME E L Sbjct: 85 TVKTNSEQFNTPYEEELHRTIIHGILHLCGINDKGPGEREIMEAAENKAL 134 >gi|33860742|ref|NP_892303.1| hypothetical protein PMM0182 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46577388|sp|Q7V3A1|RRMF_PROMP RecName: Full=Probable rRNA maturation factor gi|33633684|emb|CAE18641.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 180 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFP--TAFASSDGCSSLMLGDIVLAYEIIEIE 114 LSL + + I ++N ++ T+VLSFP + ++ + + LGD+ ++ E + Sbjct: 72 LSLQIINDNEISSINQKWMNKSGSTDVLSFPIISDEDTTKDLNFIELGDLFISLETAFKQ 131 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + + ++ L HG LHLLG++H DD + M + ++ L Sbjct: 132 SLEFNHSIKKEMLWLASHGLLHLLGWEHNDDYELDNMLNFQEYLISKL 179 >gi|253568963|ref|ZP_04846373.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840982|gb|EES69063.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 137 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + I Sbjct: 37 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGDRLSGDLFISLDTIRTN 89 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +++ L +IIHG LHL G + + +ME E L Sbjct: 90 AEQFGAAYDDELHRVIIHGILHLCGINDKGPGEREIMEEAENKAL 134 >gi|153812738|ref|ZP_01965406.1| hypothetical protein RUMOBE_03145 [Ruminococcus obeum ATCC 29174] gi|149831098|gb|EDM86187.1| hypothetical protein RUMOBE_03145 [Ruminococcus obeum ATCC 29174] Length = 133 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 15/94 (15%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSS--------LML 101 ++LV TD+ I+ +N E+R I PT+VLSF P ++ +G S L+L Sbjct: 40 VNLVITDNEEIKRVNTEFRSIGAPTDVLSFPMIPFKTPADYSVIEGDDSYFDLDTDELIL 99 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 GD++++ + + +A G E L H L Sbjct: 100 GDVMISVDKVYAQAEEYGHSTEREFSFLFAHSML 133 >gi|282891330|ref|ZP_06299832.1| hypothetical protein pah_c050o119 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498827|gb|EFB41144.1| hypothetical protein pah_c050o119 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 152 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ + F ++ L+ +Y PT+ +SFP + +LG+I + E Sbjct: 36 EVIIHFISDKKMRELHAQYFNDPSPTDCISFP--LDGPEETHYRVLGEIFVCPETAVKYT 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 G + IHG LHL+GYD + D M E+ LE L Sbjct: 94 EQHGGDPYTETALYTIHGLLHLMGYDDIKKTDQKAMRAAEKKHLEHLA 141 >gi|239917734|ref|YP_002957292.1| conserved hypothetical protein TIGR00043 [Micrococcus luteus NCTC 2665] gi|281413771|ref|ZP_06245513.1| hypothetical protein MlutN2_00957 [Micrococcus luteus NCTC 2665] gi|259645756|sp|C5CCC6|RRMF_MICLC RecName: Full=Probable rRNA maturation factor gi|239838941|gb|ACS30738.1| conserved hypothetical protein TIGR00043 [Micrococcus luteus NCTC 2665] Length = 157 Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 4/117 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEII 111 E ++ D+ R+ L+ E+ + PT+V+S P S + + +LGD+VL E+ Sbjct: 35 AETAVTVVDAARMAELHEEWMDLPGPTDVMSLPMDELTPGSPEAPAEGVLGDVVLCPEVA 94 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE-RSILEDLGINDP 167 +A G ++ L+ L+ HG LHLLGYDHV+D + M L+ R + E LG P Sbjct: 95 AEQAARGGHSRDDELLLLLTHGMLHLLGYDHVEDAEREEMFTLQDRLVSEVLGRPAP 151 >gi|325109207|ref|YP_004270275.1| metalloprotease ybeY [Planctomyces brasiliensis DSM 5305] gi|324969475|gb|ADY60253.1| metalloprotease ybeY [Planctomyces brasiliensis DSM 5305] Length = 162 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 1/117 (0%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+ ++ D+ I +N + D PT+V++FP + +IV++ E+ Sbjct: 41 AEIHVLLVDNPTIHAMNVAHLEHDFPTDVITFPLNDTDQQPPDYPLEAEIVISTEMAAEM 100 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 A G E ++H LHL G+D + + M E +L LG+ P E D Sbjct: 101 AGEAGWSAEEEATLYLVHSLLHLCGFDDLTEDAQREMRQRELEMLHHLGMK-PSETD 156 >gi|325954630|ref|YP_004238290.1| metalloprotease ybeY [Weeksella virosa DSM 16922] gi|323437248|gb|ADX67712.1| metalloprotease ybeY [Weeksella virosa DSM 16922] Length = 139 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 ++I EL+ +F D + +N +Y D T+V+ F + + ++ GDI ++ I Sbjct: 31 KSIGELNYIFCDDEYLLAINQQYLDHDYYTDVIGFDNS------ENDVLHGDIFISVTRI 84 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A F+N L ++IHG LH GY + +D M E L + Sbjct: 85 AENAQNNAVSFQNELARVMIHGILHFAGYLDYEKEDKAEMTAKENFYLNKFSL 137 >gi|224372821|ref|YP_002607193.1| putative metalloprotease [Nautilia profundicola AmH] gi|254806612|sp|B9L985|RRMF_NAUPA RecName: Full=Probable rRNA maturation factor gi|223589812|gb|ACM93548.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 139 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+ TD I+ LN ++R DK T+VLSFP + + LG IV++ + + A Sbjct: 28 DIELILTDDEEIKELNSQFRNKDKATDVLSFPL-----EAMPGMPLGSIVISIDTAKKGA 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G ++ + L +HG LHLLGYDH + D M E I++ L + Sbjct: 83 EEFGHSVDDEIRLLFLHGLLHLLGYDH--ETDNGEMRAKEEEIIKKLNL 129 >gi|218247079|ref|YP_002372450.1| hypothetical protein PCC8801_2275 [Cyanothece sp. PCC 8801] gi|257060149|ref|YP_003138037.1| hypothetical protein Cyan8802_2326 [Cyanothece sp. PCC 8802] gi|218167557|gb|ACK66294.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 8801] gi|256590315|gb|ACV01202.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 8802] Length = 178 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 7/127 (5%) Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSS 98 K + EL+L T+ I+TLN +YR ++PT+VL+F P Sbjct: 49 KPNLPPADTYELTLRLTEDLEIQTLNAQYRQKNQPTDVLAFAALEVDFPVPAEEIAALEP 108 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L LGDI+++ E +A L L HG LHLLG+DH D+ M + ++ Sbjct: 109 LYLGDIIISVETANKQAQQNHHSLLVELAWLAAHGLLHLLGWDHPDEDSLEAMLSQQETL 168 Query: 159 LEDLGIN 165 L +G+ Sbjct: 169 LTLVGLQ 175 >gi|323457282|gb|EGB13148.1| hypothetical protein AURANDRAFT_18863 [Aureococcus anophagefferens] Length = 213 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 27/132 (20%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC----------SSLMLGDIV 105 ++ + T I N +RG+ K T++LSFP + G L LGD+V Sbjct: 72 DVGIWLTTDATIRKYNTRFRGMRKSTDILSFPFHDELAPGALPDAVDRDDEDDLNLGDMV 131 Query: 106 LAYEIIEIEANVLG-----------------KEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 ++ + A G + E + L++HG HLL YDH D + Sbjct: 132 VSVPYVRRRAEKDGGRDHAPGRGVAAAMAPVADVEERIHMLLVHGLCHLLNYDHETDDEF 191 Query: 149 CVMEGLERSILE 160 M LE +LE Sbjct: 192 EDMVALEDELLE 203 >gi|86131105|ref|ZP_01049704.1| conserved hypothetical protein [Dokdonia donghaensis MED134] gi|85818516|gb|EAQ39676.1| conserved hypothetical protein [Dokdonia donghaensis MED134] Length = 135 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 6/109 (5%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K+ + EL+ +F D + +N ++ D T+++SF + ++ GD+ ++ E Sbjct: 30 KKIVGELNYIFCDDAYLHKINVDFLDHDTFTDIISFDYTQGN------VVSGDMYISVER 83 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +E A F + L +++HG LH GY ++A +M E + L Sbjct: 84 VEENAQDFNCSFRDELSRVMVHGILHYCGYKDKSIEEAKLMRSKENTYL 132 >gi|149278196|ref|ZP_01884334.1| hypothetical protein PBAL39_11582 [Pedobacter sp. BAL39] gi|149230962|gb|EDM36343.1| hypothetical protein PBAL39_11582 [Pedobacter sp. BAL39] Length = 143 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL+ + + +N EY D T+V++F + A ++ GDI ++ E I+ A Sbjct: 40 ELNFILCSDEYLLRINQEYLNHDTYTDVITFDHSEALK-----MIAGDIFISIERIQENA 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGY 140 G + L ++IHG LHLLGY Sbjct: 95 KNFGHTTQQELCRVMIHGTLHLLGY 119 >gi|88855036|ref|ZP_01129701.1| hypothetical protein A20C1_04121 [marine actinobacterium PHSC20C1] gi|88815564|gb|EAR25421.1| hypothetical protein A20C1_04121 [marine actinobacterium PHSC20C1] Length = 153 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEI 110 EL +VF D +E L+ ++ PT+VLSFP + +LGDIV+ ++ Sbjct: 35 AELGIVFVDEAAMEQLHVQWMDEPGPTDVLSFPMDELRPGTEDRQTPAGLLGDIVVCPQV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L HG LHLLG+DH + ++ M GL+R IL Sbjct: 95 AISQAETAGHPPLEEMLLLTTHGLLHLLGFDHAEPEEEKEMFGLQREIL 143 >gi|218131741|ref|ZP_03460545.1| hypothetical protein BACEGG_03362 [Bacteroides eggerthii DSM 20697] gi|317474643|ref|ZP_07933917.1| hypothetical protein HMPREF1016_00896 [Bacteroides eggerthii 1_2_48FAA] gi|217986044|gb|EEC52383.1| hypothetical protein BACEGG_03362 [Bacteroides eggerthii DSM 20697] gi|316909324|gb|EFV31004.1| hypothetical protein HMPREF1016_00896 [Bacteroides eggerthii 1_2_48FAA] Length = 137 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYE 109 ++ I E++ +F +I +N +Y D T++++F D C L GD+ ++ + Sbjct: 31 EKRIGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGNRLSGDLFISLD 83 Query: 110 IIEIEA-NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A G ++E L +IIHG LHL G + + +ME E L Sbjct: 84 TVRTNAEQFAGNDYERELHRVIIHGILHLCGINDKGPGEREIMEAAENKAL 134 >gi|325281349|ref|YP_004253891.1| metalloprotease ybeY [Odoribacter splanchnicus DSM 20712] gi|324313158|gb|ADY33711.1| metalloprotease ybeY [Odoribacter splanchnicus DSM 20712] Length = 143 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 8/105 (7%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIEA 115 ++ +F D I +N +Y D T+V++F D C +L GD+ ++ + ++ + Sbjct: 41 INFIFCDDDYILAVNRQYLKHDYYTDVITF-------DYCEGDILSGDVFISLDTVKSNS 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + FEN +I H LHL+G+ D D+ M E L+ Sbjct: 94 EMFSTFFENEFCRVICHSVLHLIGFKDKTDVDSKEMRKNENICLD 138 >gi|323359831|ref|YP_004226227.1| metal-dependent hydrolase [Microbacterium testaceum StLB037] gi|323276202|dbj|BAJ76347.1| predicted metal-dependent hydrolase [Microbacterium testaceum StLB037] Length = 155 Score = 42.0 bits (97), Expect = 0.034, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---AFASSDGCSSL-MLGDIVLAYEI 110 ++++V D +E+L+ ++ PT+VLSFP S D + +LGDIVL + Sbjct: 35 ADVAIVLVDEGAMESLHVQWMDEPGPTDVLSFPMDELRPGSEDAPTPAGLLGDIVLCPSV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 E +A ++ L+ L HG LHLLG+DH + + M GL+R ++ Sbjct: 95 AEAQAVTAQHSTQDELILLTTHGLLHLLGFDHAEPDEEREMFGLQRELI 143 >gi|329956354|ref|ZP_08296951.1| translation metalloprotein YbeY [Bacteroides clarus YIT 12056] gi|328524251|gb|EGF51321.1| translation metalloprotein YbeY [Bacteroides clarus YIT 12056] Length = 137 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 9/111 (8%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYE 109 ++ + E++ +F +I +N Y D T++++F D C L GD+ ++ + Sbjct: 31 EKRVGEIAYIFCSDEKILEVNRRYLQHDYYTDIITF-------DYCEGNRLSGDLFISLD 83 Query: 110 IIEIEA-NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A G ++E L +IIHG LHL G + + +ME E L Sbjct: 84 TVRTNAEQFAGNDYERELYRVIIHGILHLCGINDKGPGEREIMEAAENKAL 134 >gi|257460682|ref|ZP_05625783.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257442013|gb|EEV17155.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 209 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 +LG +V+ +++E++A LG ++ L HG LH+LGYDH D Sbjct: 134 LLGSVVINLDLVELKAAQLGHGRDDETALLFTHGLLHVLGYDHESD 179 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSF---PTAFA 91 L+F + LN + RGIDK T+VLSF P AFA Sbjct: 26 LIFVRGEEMRQLNAQTRGIDKATDVLSFPLDPAAFA 61 >gi|329960651|ref|ZP_08298994.1| translation metalloprotein YbeY [Bacteroides fluxus YIT 12057] gi|328532524|gb|EGF59318.1| translation metalloprotein YbeY [Bacteroides fluxus YIT 12057] Length = 137 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEI 110 + I E++ +F +I +N +Y D T++++F D C L GD+ ++ + Sbjct: 32 KRIGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGNRLSGDLFISLDT 84 Query: 111 IEIEA-NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A G ++E L +IIHG LHL G + + +ME E L Sbjct: 85 VRTNAEQFAGNDYERELYRVIIHGILHLCGINDKGPGEREIMEEAENKAL 134 >gi|327403529|ref|YP_004344367.1| metalloprotease ybeY [Fluviicola taffensis DSM 16823] gi|327319037|gb|AEA43529.1| metalloprotease ybeY [Fluviicola taffensis DSM 16823] Length = 146 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 6/104 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++SL+F + +N EY D T++++F + D L+ GD+ ++ + + A Sbjct: 37 DISLIFCSDEHLLEMNREYLQHDFFTDIITFD--YTEED----LVSGDLFISVDRVRDNA 90 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + F++ L + +HG LHL GY D+D +M E +L Sbjct: 91 DEFDVLFQDELHRVCVHGLLHLCGYKDKSDEDEKLMRQKENDML 134 >gi|298711736|emb|CBJ32782.1| conserved unknown protein [Ectocarpus siliculosus] Length = 296 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 43/147 (29%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-AFASSDGC-------SSLMLGD--IV 105 ++ V T + LN +YRG+ T++LSFP + S G + + LGD I Sbjct: 139 DVGAVLTTDKEVFRLNRQYRGMSTSTDILSFPNHDMSGSPGVLPKVRFPAEMDLGDMFIS 198 Query: 106 LAYEIIEI----------------------------EANVLGK-----EFENHLVHLIIH 132 LAY +I E V G + + L++H Sbjct: 199 LAYVDRQIKRDREEQAAAVAAAAAGGGGQEEEWWDSERGVSGAMSRVFDVQERASMLLVH 258 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSIL 159 G +HLLGYDH + D M +E +L Sbjct: 259 GLIHLLGYDHETESDYKAMVAVEEEVL 285 >gi|307110839|gb|EFN59074.1| hypothetical protein CHLNCDRAFT_13914 [Chlorella variabilis] Length = 109 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 23/32 (71%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +ELSLV D + LN E+RG+D PT+VLSF Sbjct: 11 LELSLVLCDDAHMRGLNAEWRGVDAPTDVLSF 42 >gi|298373323|ref|ZP_06983312.1| metalloprotease [Bacteroidetes oral taxon 274 str. F0058] gi|298274375|gb|EFI15927.1| metalloprotease [Bacteroidetes oral taxon 274 str. F0058] Length = 136 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 6/84 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++S +F D +I +N ++ D T+V++F + D ++ GDI ++ E +E A Sbjct: 36 DVSFIFCDDIKILEINKQFLNHDYYTDVITFD--YTEGD----VIGGDIFISLETVESNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLG 139 F+N L ++IHG LHL G Sbjct: 90 KEFLTTFDNELKRVMIHGILHLCG 113 >gi|313203915|ref|YP_004042572.1| hypothetical protein Palpr_1441 [Paludibacter propionicigenes WB4] gi|312443231|gb|ADQ79587.1| protein of unknown function UPF0054 [Paludibacter propionicigenes WB4] Length = 138 Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY 108 F + + E++ +F RI +N +Y D T++++F + SS++ GDI ++ Sbjct: 29 FYGKKVGEIAYIFCSDERILEINKQYLNHDYYTDIITFDYS------ESSVISGDIFISI 82 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 + ++ A E L ++IHG LHL G Sbjct: 83 DTVKSNAEEFNVSIEEELKRILIHGILHLCG 113 >gi|303326746|ref|ZP_07357188.1| cupin domain protein [Desulfovibrio sp. 3_1_syn3] gi|302862734|gb|EFL85666.1| cupin domain protein [Desulfovibrio sp. 3_1_syn3] Length = 141 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 10/93 (10%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VEL L+ D + N + PTNVLSFP D + G ++L+ + + E Sbjct: 43 VELHLL--DDAAVSAANRRFMNCIGPTNVLSFP---GGED-----LPGILLLSLDTLARE 92 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + G+E H + L+ HG HL G DH D Sbjct: 93 CLLYGQEPAEHALRLLAHGMGHLAGLDHGPAMD 125 >gi|255010260|ref|ZP_05282386.1| hypothetical protein Bfra3_14062 [Bacteroides fragilis 3_1_12] gi|313148055|ref|ZP_07810248.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136822|gb|EFR54182.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 139 Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 8/109 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEI 110 + I E++ +F +I +N +Y D T++++F D C L GD+ ++ E Sbjct: 33 KRIGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCQGDRLSGDLFISLET 85 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ + ++ L IIHG LHL G + + +ME E L Sbjct: 86 VKTNSEQFNTTYDEELHRTIIHGILHLCGINDKGPGEREIMEAAENRAL 134 >gi|193215488|ref|YP_001996687.1| hypothetical protein Ctha_1783 [Chloroherpeton thalassium ATCC 35110] gi|238692691|sp|B3QTP2|RRMF_CHLT3 RecName: Full=Probable rRNA maturation factor gi|193088965|gb|ACF14240.1| protein of unknown function UPF0054 [Chloroherpeton thalassium ATCC 35110] Length = 141 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S V+ I +N E+ D PT+ +SF + + G+ ++ + + A Sbjct: 35 EISAVYCGDRLIRKINIEHLAHDYPTDTISFRL------NSGNAIEGEFYISCDTVRRNA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYD 141 FEN L+ + IH LHL+G++ Sbjct: 89 QEYESSFENELLRVTIHSVLHLIGFE 114 >gi|313157525|gb|EFR56943.1| translation metalloprotein YbeY [Alistipes sp. HGB5] Length = 143 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++S +F + R+ +N +Y G D T+V++F ++ G + ++ GDI + E + A Sbjct: 37 DVSYIFCSAQRLLEMNRQYLGHDYFTDVITFD--YSDRKG-ARVISGDIFIDVETVADNA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLG 139 + G + +++HG LHL G Sbjct: 94 RLYGFSTLQEMRRVVVHGVLHLCG 117 >gi|325299508|ref|YP_004259425.1| metalloprotease ybeY [Bacteroides salanitronis DSM 18170] gi|324319061|gb|ADY36952.1| metalloprotease ybeY [Bacteroides salanitronis DSM 18170] Length = 140 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 12/124 (9%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + KAV+ K + E++ +F +I +N +Y D T++++F S+G Sbjct: 22 WVKAVAQTYGK------KVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFD----YSEG 71 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + + GD+ ++ + + A ++ L +IIHG LHL G + + +ME E Sbjct: 72 --NRIAGDLFISLDTVRTNAEQFNAPYDTELHRVIIHGILHLCGINDKGPGEREIMEAAE 129 Query: 156 RSIL 159 L Sbjct: 130 NKAL 133 >gi|218258573|ref|ZP_03474916.1| hypothetical protein PRABACTJOHN_00571 [Parabacteroides johnsonii DSM 18315] gi|218225343|gb|EEC97993.1| hypothetical protein PRABACTJOHN_00571 [Parabacteroides johnsonii DSM 18315] Length = 144 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 11/141 (7%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 A + ++I L + +AV N + + + + ++S +F +I +N +Y D Sbjct: 4 AFYAEDIKL----PAIKKRAVGNWVKEVAATYGKKVGDISYIFCSDEKILEVNRQYLQHD 59 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 T++++F + S D S GD+ ++ + ++ + + L IIHG LHL Sbjct: 60 YYTDIITFD--YTSGDKIS----GDLFISLDTVKTNSETFNTSYNEELHRTIIHGILHLC 113 Query: 139 GYDHVDDKDACVMEGLERSIL 159 G + + +ME E L Sbjct: 114 GINDKGPGEREIMEANENKAL 134 >gi|319900528|ref|YP_004160256.1| hypothetical protein Bache_0647 [Bacteroides helcogenes P 36-108] gi|319415559|gb|ADV42670.1| protein of unknown function UPF0054 [Bacteroides helcogenes P 36-108] Length = 138 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIE 114 E++ +F +I +N +Y D T++++F D C L GD+ ++ + + Sbjct: 36 EIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGNRLSGDLFISLDTVRTN 88 Query: 115 A-NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G ++E L +IIHG LHL G + + +ME E L Sbjct: 89 AEQFAGNDYERELYRVIIHGILHLCGINDKGPGEREIMEEAENKAL 134 >gi|305665799|ref|YP_003862086.1| hypothetical protein FB2170_05900 [Maribacter sp. HTCC2170] gi|88710565|gb|EAR02797.1| hypothetical protein FB2170_05900 [Maribacter sp. HTCC2170] Length = 140 Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 6/99 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++ +F + + +N ++ D T++++F +DG +++ GD+ ++ E IE A Sbjct: 36 INFIFCEDDYLLKVNQQHLKHDYFTDIITFDY----TDG--NIVSGDVFISTERIEENAG 89 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + G F L+ ++ HG LHLLGY+ + + M E Sbjct: 90 LFGVNFNTELLRVMSHGILHLLGYNDKSEDEVIKMRAKE 128 >gi|294054666|ref|YP_003548324.1| protein of unknown function UPF0054 [Coraliomargarita akajimensis DSM 45221] gi|293613999|gb|ADE54154.1| protein of unknown function UPF0054 [Coraliomargarita akajimensis DSM 45221] Length = 153 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDI 104 + G+F ++ ELS+VF I ++ ++ PT+V++FP G+I Sbjct: 31 ASGHFPIQS-GELSIVFVGDPEIGQIHDDFMDDPSPTDVITFPA------DPEMDFAGEI 83 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +++ + ++ L L ++HG+LHL GYD +++ D M E+ L+ Sbjct: 84 IVSVDHAIRKSKELDLPLTRELSLYLVHGWLHLAGYDDLNEADRAEMRKAEQIALD 139 >gi|71654855|ref|XP_816039.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881140|gb|EAN94188.1| hypothetical protein, conserved [Trypanosoma cruzi] gi|322822620|gb|EFZ28616.1| hypothetical protein TCSYLVIO_5140 [Trypanosoma cruzi] Length = 207 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 36/145 (24%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLS------------------FPTA---FASS 93 VELS+ F +++ LN E RGID+PT+VL+ FP S Sbjct: 39 VELSIHFIRLSQMQLLNHERRGIDRPTDVLTVSGSGSGSPDASWVNGVLFPDKSHIVCVS 98 Query: 94 DGCSS------------LMLGDIVLAYEIIEIEANVLGKE---FENHLVHLIIHGFLHLL 138 DG + L LG+I ++ E + + + F ++L + H LH L Sbjct: 99 DGLRASEWAAPSRRDLLLDLGEIYVSVEEMWMRCLRYPHKNLPFHDYLQVALTHALLHAL 158 Query: 139 GYDHVDDKDACVMEGLERSILEDLG 163 GYDH + M E+ +L L Sbjct: 159 GYDHDTPERWKKMSRREKFMLHQLA 183 >gi|291514792|emb|CBK64002.1| conserved hypothetical protein TIGR00043 [Alistipes shahii WAL 8301] Length = 145 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ +F + R+ +N +Y G D T+V++F ++ G + ++ GDI + E + A Sbjct: 37 DVTYIFCSAQRLLEMNRQYLGHDYFTDVITFD--YSDRKG-ARIVSGDIFIDVETVADNA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLG 139 G + +++HG LHL G Sbjct: 94 RQYGATTLQEMRRVVVHGILHLCG 117 >gi|281341183|gb|EFB16767.1| hypothetical protein PANDA_007691 [Ailuropoda melanoleuca] Length = 137 Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 10/95 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI L Sbjct: 36 DLGIICVDNKNIQHINRMYREKNIPTDVLSFPFHENIKAGELPQPDFQDDYNLGDIFLGV 95 Query: 109 EIIEIEANVLGKE-FENHLVHLIIHGFLHLLGYDH 142 E I + G E + + L HG HLLG+ H Sbjct: 96 EYIFQQCR--GHEDYYDILTVTATHGLCHLLGFTH 128 >gi|88801787|ref|ZP_01117315.1| hypothetical protein PI23P_03972 [Polaribacter irgensii 23-P] gi|88782445|gb|EAR13622.1| hypothetical protein PI23P_03972 [Polaribacter irgensii 23-P] Length = 137 Score = 40.4 bits (93), Expect = 0.094, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 11/109 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL+ +F D + LN E+ D T+++SF + L+ GDI ++ E + A Sbjct: 35 ELNYIFCDDAYLLKLNVEFLQHDTFTDIISFDNSIGK------LISGDIFISTERVAENA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 F+ L ++IHG LH +G+ KD + E E + E+ + Sbjct: 89 TDYKVSFQEELQRVMIHGVLHCVGF-----KDKTMEEQEEMTRQENTAL 132 >gi|193212442|ref|YP_001998395.1| hypothetical protein Cpar_0779 [Chlorobaculum parvum NCIB 8327] gi|238692633|sp|B3QMP2|RRMF_CHLP8 RecName: Full=Probable rRNA maturation factor gi|193085919|gb|ACF11195.1| protein of unknown function UPF0054 [Chlorobaculum parvum NCIB 8327] Length = 141 Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 RT+ E + A+A+ +I + + + ++ + I +N ++ D T+ ++F Sbjct: 11 RTIDEALLAEAIQLVIGE---EGGKVGSIEAIYCGNKMIRRINRDFLNHDYATDTITF-- 65 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 ++G + G+ ++ ++IE A G FE+ L+ + IH LHL+GYD Sbjct: 66 --GYNEGGE--VEGEFYISLDVIESNARRFGVMFEDELLRVTIHSALHLMGYD 114 >gi|89889741|ref|ZP_01201252.1| conserved hypothetical protein, UPF0054 family [Flavobacteria bacterium BBFL7] gi|89518014|gb|EAS20670.1| conserved hypothetical protein, UPF0054 family [Flavobacteria bacterium BBFL7] Length = 139 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 11/120 (9%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E+ F+K + + S ++I +LS VF + +N +Y D T++++F Sbjct: 15 EIYFSKWLDAIASSE---NKSIGDLSYVFCTDEFLLDINQQYLNHDTLTDIITF------ 65 Query: 93 SDGCS-SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 D C L+ G+I ++ + ++ A+ F L+ ++ HG LHLLGY D++ +M Sbjct: 66 -DYCDDQLIHGEIYISIDRVKENASDFQVTFTEELLRVMAHGLLHLLGYGDKLDEEKVIM 124 >gi|228471545|ref|ZP_04056320.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228277121|gb|EEK15801.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 138 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 6/85 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ +F + + +N +Y D T++++F G +L+ DI ++ E + A Sbjct: 36 DINYIFCNDEYLHKINVDYLQHDTLTDIITFDY------GKDNLLASDIYISIERVRENA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGY 140 G +F L+ ++ HG LHL GY Sbjct: 90 QEFGVDFSTELLRVMSHGILHLCGY 114 >gi|163786964|ref|ZP_02181412.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|163789246|ref|ZP_02183688.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|159875461|gb|EDP69523.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|159878824|gb|EDP72880.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] Length = 136 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 9/117 (7%) Query: 37 AKAVSNLISKGYFVKENIVE--LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 ++ +S ISK +EN E ++ +F + LN ++ D T+++SF + Sbjct: 15 SEQISKWISKT-ISEENCKEGEINYIFCSDEYLHRLNVDFLNHDTLTDIISFDYSVGKE- 72 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + GD+ ++ + ++ A FE+ + +IIHG LH GY ++D +M Sbjct: 73 -----LHGDVYISVDRVKENAFEFKTAFEDEISRVIIHGVLHYCGYKDKSEEDEMLM 124 >gi|299139982|ref|ZP_07033152.1| protein of unknown function UPF0054 [Acidobacterium sp. MP5ACTX8] gi|298597982|gb|EFI54150.1| protein of unknown function UPF0054 [Acidobacterium sp. MP5ACTX8] Length = 192 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 5/105 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ ++ +D + LN E+RG DK T+VLSFP + + GD+ ++ + +A Sbjct: 43 EVEVLLSDDRTLRRLNREFRGKDKATDVLSFP----APPELEGQLAGDLAISLDTALKQA 98 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSIL 159 G + + L++HG LHL G DH VD+ + E + R+ L Sbjct: 99 QEQGHTLRDEVRVLLLHGLLHLYGMDHEVDEGEMAAREAVLRTQL 143 >gi|196234338|ref|ZP_03133167.1| protein of unknown function UPF0054 [Chthoniobacter flavus Ellin428] gi|196221605|gb|EDY16146.1| protein of unknown function UPF0054 [Chthoniobacter flavus Ellin428] Length = 146 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 LR L + + + + + G F + E+ + IE ++ + T+V++F Sbjct: 19 LRKLAPLALERCLEH-SADGRFALRQLEEVEVAIVTDRVIEDVHLRFLKTPGATDVITFE 77 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 G+IV++ E A + L IIHG LHL GYD + D Sbjct: 78 -------------YGEIVISAETAAAYARQYKHDVNRELGLYIIHGLLHLNGYDDLTPGD 124 Query: 148 ACVMEGLERSILE 160 A +M ++ ILE Sbjct: 125 AELMHRTQQDILE 137 >gi|162448297|ref|YP_001610664.1| hypothetical protein sce0028 [Sorangium cellulosum 'So ce 56'] gi|161158879|emb|CAN90184.1| hypothetical protein sce0028 [Sorangium cellulosum 'So ce 56'] Length = 201 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 17/119 (14%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--------------- 99 VELS+ + I LN YR DKPT+VL+FP +G S Sbjct: 57 VELSVALVNDEAIHELNRSYRRKDKPTDVLAFP--MLDQNGADSRRRGRRGPVDPSVWRG 114 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +LGD++++ + +A + + + L+ HG LHLLGYDH D + M L R + Sbjct: 115 LLGDVIVSIDTAARQAAERDRPLLDEITMLLGHGLLHLLGYDHKTDAEEREMTDLTREL 173 >gi|212692566|ref|ZP_03300694.1| hypothetical protein BACDOR_02063 [Bacteroides dorei DSM 17855] gi|237709119|ref|ZP_04539600.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724398|ref|ZP_04554879.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265752644|ref|ZP_06088213.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212664851|gb|EEB25423.1| hypothetical protein BACDOR_02063 [Bacteroides dorei DSM 17855] gi|229437267|gb|EEO47344.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456815|gb|EEO62536.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263235830|gb|EEZ21325.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 138 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 8/109 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-SSLMLGDIVLAYEI 110 + + E++ +F +I +N +Y D T++++F D C + + GD+ ++ + Sbjct: 32 KRVGEIAYIFCSDDKILEVNQQYLQHDYYTDIITF-------DYCEGNRISGDLFISLDT 84 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A + ++ L +IIHG LHL G + + +ME E L Sbjct: 85 VRTNAEQFEQPYDRELHRVIIHGILHLCGINDKGPGEREIMEAAENKAL 133 >gi|258648907|ref|ZP_05736376.1| putative metalloprotease [Prevotella tannerae ATCC 51259] gi|260850939|gb|EEX70808.1| putative metalloprotease [Prevotella tannerae ATCC 51259] Length = 139 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +F D +I +N +Y D T++++F ++G +++ GD+ ++ + + A Sbjct: 36 EIAYIFCDDEKILEVNQQYLNHDYYTDIITFDY----TEG--NVLSGDLFISLDTVRTNA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +IIHG LHL G + + +ME E L Sbjct: 90 EQRQISYREELDRVIIHGILHLCGINDKGPGERQLMEAAENKAL 133 >gi|224142850|ref|XP_002324751.1| predicted protein [Populus trichocarpa] gi|222866185|gb|EEF03316.1| predicted protein [Populus trichocarpa] Length = 574 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +ELS++ + I LN E+R D T+VLS D LMLGDIV++ E + Sbjct: 154 IELSVMLCNDEFIRKLNKEWRDEDHATDVLSMSQHVPGLD-LPILMLGDIVISVETAARQ 212 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLG 163 A G + L++HG LHL G+DH + ++ M+ E +LE LG Sbjct: 213 AEERGHTLIDETRVLLVHGLLHLFGFDHEISEEAEAEMDKEEGVLLESLG 262 >gi|21674205|ref|NP_662270.1| hypothetical protein CT1383 [Chlorobium tepidum TLS] gi|62901450|sp|Q8KCN1|RRMF_CHLTE RecName: Full=Probable rRNA maturation factor gi|21647369|gb|AAM72612.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 137 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 RT+ E + A+ + +I + + + ++ + I +N ++ G D T+ ++F Sbjct: 11 RTIDETLLAEVIRLVIGE---EGGAVGSIEAIYCGNKMIRRINRDFLGHDYVTDTITF-- 65 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 ++G + G+ ++ ++IE A G FE+ L+ + IH LHL+GYD Sbjct: 66 --GYNEGGE--VDGEFYISLDVIESNARRFGVSFEDELLRVTIHSALHLMGYD 114 >gi|154494262|ref|ZP_02033582.1| hypothetical protein PARMER_03613 [Parabacteroides merdae ATCC 43184] gi|154085946|gb|EDN84991.1| hypothetical protein PARMER_03613 [Parabacteroides merdae ATCC 43184] Length = 148 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 7/131 (5%) Query: 30 TLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 T + +AV N + + + + ++S +F +I +N +Y D T++++F Sbjct: 10 TKLPAIKKRAVGNWVKEVAATYGKKVGDISYIFCSDEKILEVNRQYLQHDYYTDIITFD- 68 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + S D S GD+ ++ + ++ + + L IIHG LHL G + + Sbjct: 69 -YTSGDKIS----GDLFISLDTVKTNSEAFNTPYNEELHRTIIHGILHLCGINDKGPGER 123 Query: 149 CVMEGLERSIL 159 +ME E L Sbjct: 124 ELMEANENKAL 134 >gi|124010286|ref|ZP_01694939.1| conserved hypothetical protein, putative [Microscilla marina ATCC 23134] gi|123983671|gb|EAY24111.1| conserved hypothetical protein, putative [Microscilla marina ATCC 23134] Length = 157 Score = 39.7 bits (91), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L+ +F + + +N EY D T++++F + L+ GDI ++ + I A Sbjct: 53 LNYIFCNDAYLHQINVEYLDHDTYTDIITFDNS-----EEEQLIEGDIFISIDRIRENAA 107 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 F L ++ HG LHLLG+ D + +M E L Sbjct: 108 TYNASFAVELHRVMAHGLLHLLGFGDKTDDEKLIMRTQEDKAL 150 >gi|254880983|ref|ZP_05253693.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319639991|ref|ZP_07994718.1| metalloprotease [Bacteroides sp. 3_1_40A] gi|254833776|gb|EET14085.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388269|gb|EFV69121.1| metalloprotease [Bacteroides sp. 3_1_40A] Length = 138 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 6/108 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F +I +N +Y D T++++F + D S GD+ ++ + + Sbjct: 32 KRVGEIAYIFCSDDKILEVNRQYLQHDYYTDIITFD--YCEGDRIS----GDLFISLDTV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A + ++ L +IIHG LHL G + + +ME E L Sbjct: 86 RSNAEQFEQPYDRELHRVIIHGILHLCGINDKGPGEREIMEAAENKAL 133 >gi|320170652|gb|EFW47551.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 204 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 26/138 (18%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--------------PT----- 88 +FV E ++ + SH + + R +PT++L+F P Sbjct: 42 HFVGETRMKALVAQAQSHELASAQPPPRSA-RPTDILAFGNPMDVAADGLHKHPASSLEE 100 Query: 89 ------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 A+ S+ G +G++ L +IE + FE L L+ HG HLLG+DH Sbjct: 101 MKKCNLAWKSAYGDPVRDIGELFLCPAVIERDCLKDQVTFEGRLPVLLAHGLCHLLGHDH 160 Query: 143 VDDKDACVMEGLERSILE 160 + + M LE+ +L+ Sbjct: 161 DTMRTSAQMFQLEQQLLQ 178 >gi|150003785|ref|YP_001298529.1| hypothetical protein BVU_1217 [Bacteroides vulgatus ATCC 8482] gi|294777391|ref|ZP_06742842.1| metalloprotein, YbeY family [Bacteroides vulgatus PC510] gi|172048643|sp|A6KZP3|RRMF_BACV8 RecName: Full=Probable rRNA maturation factor gi|149932209|gb|ABR38907.1| conserved hypothetical protein with conserved domain [Bacteroides vulgatus ATCC 8482] gi|294448459|gb|EFG17008.1| metalloprotein, YbeY family [Bacteroides vulgatus PC510] Length = 138 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 6/108 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F +I +N +Y D T++++F + D S GD+ ++ + + Sbjct: 32 KRVGEIAYIFCSDDKILEVNRQYLQHDYYTDIITFD--YCEGDRIS----GDLFISLDTV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A + ++ L +IIHG LHL G + + +ME E L Sbjct: 86 RSNAEQFEQPYDRELHRVIIHGILHLCGINDKGPGEREIMEAAENKAL 133 >gi|289425171|ref|ZP_06426948.1| metalloprotein, YbeY family [Propionibacterium acnes SK187] gi|289427200|ref|ZP_06428916.1| metalloprotein, YbeY family [Propionibacterium acnes J165] gi|295130497|ref|YP_003581160.1| metalloprotein, YbeY family [Propionibacterium acnes SK137] gi|289154149|gb|EFD02837.1| metalloprotein, YbeY family [Propionibacterium acnes SK187] gi|289159669|gb|EFD07857.1| metalloprotein, YbeY family [Propionibacterium acnes J165] gi|291376558|gb|ADE00413.1| metalloprotein, YbeY family [Propionibacterium acnes SK137] gi|313764557|gb|EFS35921.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL013PA1] gi|313772405|gb|EFS38371.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL074PA1] gi|313801806|gb|EFS43040.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA2] gi|313807415|gb|EFS45902.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL087PA2] gi|313809923|gb|EFS47644.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL083PA1] gi|313816098|gb|EFS53812.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL059PA1] gi|313818461|gb|EFS56175.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL046PA2] gi|313820224|gb|EFS57938.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL036PA1] gi|313822967|gb|EFS60681.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL036PA2] gi|313825105|gb|EFS62819.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL063PA1] gi|313827673|gb|EFS65387.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL063PA2] gi|313830254|gb|EFS67968.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL007PA1] gi|313834055|gb|EFS71769.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL056PA1] gi|313838632|gb|EFS76346.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL086PA1] gi|314915553|gb|EFS79384.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA4] gi|314918493|gb|EFS82324.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL050PA1] gi|314919980|gb|EFS83811.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL050PA3] gi|314925452|gb|EFS89283.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL036PA3] gi|314931993|gb|EFS95824.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL067PA1] gi|314955862|gb|EFT00262.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL027PA1] gi|314958343|gb|EFT02446.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL002PA1] gi|314960102|gb|EFT04204.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL002PA2] gi|314962904|gb|EFT07004.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL082PA1] gi|314968019|gb|EFT12118.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL037PA1] gi|314973260|gb|EFT17356.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL053PA1] gi|314975935|gb|EFT20030.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL045PA1] gi|314978308|gb|EFT22402.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL072PA2] gi|314984047|gb|EFT28139.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA1] gi|314987810|gb|EFT31901.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA2] gi|314990031|gb|EFT34122.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA3] gi|315080748|gb|EFT52724.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL078PA1] gi|315084418|gb|EFT56394.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL027PA2] gi|315085758|gb|EFT57734.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL002PA3] gi|315088824|gb|EFT60800.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL072PA1] gi|315096172|gb|EFT68148.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL038PA1] gi|315098434|gb|EFT70410.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL059PA2] gi|315101209|gb|EFT73185.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL046PA1] gi|315108431|gb|EFT80407.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL030PA2] gi|327326089|gb|EGE67879.1| putative metalloprotease [Propionibacterium acnes HL096PA2] gi|327332040|gb|EGE73777.1| putative metalloprotease [Propionibacterium acnes HL096PA3] gi|327443243|gb|EGE89897.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL013PA2] gi|327446029|gb|EGE92683.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL043PA2] gi|327447993|gb|EGE94647.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL043PA1] gi|327450883|gb|EGE97537.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL087PA3] gi|327453768|gb|EGF00423.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL083PA2] gi|328753570|gb|EGF67186.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL020PA1] gi|328754303|gb|EGF67919.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL087PA1] gi|328754445|gb|EGF68061.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL025PA2] gi|328760410|gb|EGF73978.1| putative metalloprotease [Propionibacterium acnes HL099PA1] gi|332675333|gb|AEE72149.1| putative metal-dependent hydrolase [Propionibacterium acnes 266] Length = 155 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEII 111 ELS++ D +E + ++ G+ PT+VLSFP A + S +LGDIVL + Sbjct: 35 ELSIILVDEETMEAYHEKFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVT 94 Query: 112 EIEANVLGK 120 +A G+ Sbjct: 95 ARQAAENGR 103 >gi|213581737|ref|ZP_03363563.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 39 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 22/32 (68%) Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +LGYDH+DD +A ME LE I+ +G DPY Sbjct: 1 MLGYDHIDDDEAEEMESLETEIMLAMGYEDPY 32 >gi|157876147|ref|XP_001686434.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129508|emb|CAJ08051.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 213 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIV 105 L+L F + LN++Y+G+D+PT+VL+F A + + L+ GD + Sbjct: 37 TRLNLEFVSLAHMRQLNYKYKGLDRPTDVLTFAPAGEADSFVNDLLFGDFL 87 >gi|110598628|ref|ZP_01386894.1| Protein of unknown function UPF0054 [Chlorobium ferrooxidans DSM 13031] gi|110339740|gb|EAT58249.1| Protein of unknown function UPF0054 [Chlorobium ferrooxidans DSM 13031] Length = 149 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 9/137 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R + E + + AV ++ F +++V V+ + I+ +N E+ G D PT+ ++F Sbjct: 22 REVPEQLLSDAVLLVLETEEFTVDSVVG---VYCGNKMIQRINREFLGHDYPTDTVTFRY 78 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + + G+ ++ +++ A +F L+ + IH LHL+GYD ++ Sbjct: 79 SKDRE------VDGEFYISLDVVRENAARFDADFLQELLRVTIHSALHLIGYDDQSPEER 132 Query: 149 CVMEGLERSILEDLGIN 165 M+ E L L N Sbjct: 133 AGMQEKEAFYLARLAQN 149 >gi|50842421|ref|YP_055648.1| putative metalloprotease [Propionibacterium acnes KPA171202] gi|282854119|ref|ZP_06263456.1| metalloprotein, YbeY/ UPF0054family [Propionibacterium acnes J139] gi|59799026|sp|Q6A976|RRMF_PROAC RecName: Full=Probable rRNA maturation factor gi|50840023|gb|AAT82690.1| conserved protein [Propionibacterium acnes KPA171202] gi|282583572|gb|EFB88952.1| metalloprotein, YbeY/ UPF0054family [Propionibacterium acnes J139] gi|314923094|gb|EFS86925.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL001PA1] gi|314966863|gb|EFT10962.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL082PA2] gi|314981205|gb|EFT25299.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA3] gi|315091776|gb|EFT63752.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA4] gi|315093216|gb|EFT65192.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL060PA1] gi|315103280|gb|EFT75256.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL050PA2] gi|315105485|gb|EFT77461.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL030PA1] Length = 155 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEII 111 ELS++ D +E + ++ G+ PT+VLSFP A + S +LGDIVL + Sbjct: 35 ELSIILVDEETMEAYHEKFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVT 94 Query: 112 EIEANVLGK 120 +A G+ Sbjct: 95 ARQAAENGR 103 >gi|189501732|ref|YP_001957449.1| hypothetical protein Aasi_0282 [Candidatus Amoebophilus asiaticus 5a2] gi|238692302|sp|B3ER68|RRMF_AMOA5 RecName: Full=Probable rRNA maturation factor gi|189497173|gb|ACE05720.1| hypothetical protein Aasi_0282 [Candidatus Amoebophilus asiaticus 5a2] Length = 147 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 +V L+ +F + + N +Y D T+V++F A + + G+I ++ E + Sbjct: 38 LVNLNFIFCSDNFLHKKNLKYLQHDTLTDVITFSYAEDQKN-----IEGEIYISIERVSD 92 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYD 141 A +F L ++IHG LHLLGY+ Sbjct: 93 NATTYQIDFWQELYTVMIHGVLHLLGYN 120 >gi|326488921|dbj|BAJ98072.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 590 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S++ + + I+ LN E+RG D T++LS + F +LMLGDIV++ E + Sbjct: 168 VEVSVLVCNDNFIQNLNKEWRGEDCATDMLSV-SQFIPDLDVPTLMLGDIVISVETAARQ 226 Query: 115 ANVLG 119 A G Sbjct: 227 AEARG 231 >gi|328480085|gb|EGF49072.1| metalloprotease [Lactobacillus rhamnosus MTCC 5462] Length = 35 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 22/33 (66%) Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 HGFLHL GYDH+ +D VM L++ IL G+ Sbjct: 1 HGFLHLNGYDHIKPEDEAVMIPLQKKILTAYGL 33 >gi|327327688|gb|EGE69464.1| putative metalloprotease [Propionibacterium acnes HL103PA1] Length = 155 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEII 111 ELS++ D +E + ++ G+ PT+VLSFP A + S +LGDIVL + Sbjct: 35 ELSIILVDEETMEAYHEKFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVT 94 Query: 112 EIEANVLGK 120 +A G+ Sbjct: 95 ARQAAENGR 103 >gi|225156450|ref|ZP_03724786.1| protein of unknown function UPF0054 [Opitutaceae bacterium TAV2] gi|224802958|gb|EEG21204.1| protein of unknown function UPF0054 [Opitutaceae bacterium TAV2] Length = 179 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELSL F + L+ ++ +D PT F ++ G S G+I ++ + A Sbjct: 50 ELSLAFLSDAALARLHADF--LDDPTTTDVI--TFEATPGMGSA--GEICVSVDTAARYA 103 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 G +F L I+HG+LHL GYD + M E+ + Sbjct: 104 REHGHDFAEELALYIVHGWLHLAGYDDLQPMKKRRMRAAEKRAI 147 >gi|332828365|gb|EGK01074.1| metalloprotease [Dysgonomonas gadei ATCC BAA-286] Length = 139 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 6/112 (5%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K+ + ++S +F +I +N +Y D T++++F + + GDI ++ + Sbjct: 32 KKRVGDISFIFCSDKKILEINNQYLQHDYYTDIITFDYTEGET------ISGDIFISLDT 85 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++ A + + +IIHG LHL G + + M G E L+ L Sbjct: 86 VKSNAEKFETNYNEEIHRIIIHGILHLCGINDKGPGEREFMTGCENKALKML 137 >gi|302342384|ref|YP_003806913.1| hypothetical protein Deba_0949 [Desulfarculus baarsii DSM 2075] gi|301638997|gb|ADK84319.1| protein of unknown function UPF0054 [Desulfarculus baarsii DSM 2075] Length = 140 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 35/71 (49%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 SL+ D I +N +Y PTNVL+F G + +LGD+V++ + + EA Sbjct: 21 SLLICDDVEIAQINGQYLDRRGPTNVLAFAMQEGDGAGVNPQILGDVVVSIDTAQREAAE 80 Query: 118 LGKEFENHLVH 128 G + + H V Sbjct: 81 NGLDPDEHFVR 91 >gi|320106115|ref|YP_004181705.1| hypothetical protein AciPR4_0878 [Terriglobus saanensis SP1PR4] gi|319924636|gb|ADV81711.1| protein of unknown function UPF0054 [Terriglobus saanensis SP1PR4] Length = 156 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 6/106 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++++ D R++ LN +R +K T+VLSFP S + + GD+ ++ + E +A Sbjct: 35 DVTVLLADDARVKDLNRTFRKKNKATDVLSFPAGEGSDE-----IAGDLAISLDTAEKQA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE-RSILE 160 G + + L +HG LHL G DH DK + LE R+ LE Sbjct: 90 ESFGHTLYDEVRVLTLHGLLHLAGLDHEIDKGEMAAKELELRTKLE 135 >gi|327538122|gb|EGF24808.1| protein belonging to uncharacterized protein family UPF0054 [Rhodopirellula baltica WH47] Length = 193 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 13/114 (11%) Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE-----ANV 117 D I +N E+ D PT+V+SFP ++ G++V ++E IE +N Sbjct: 60 DDATIHPINREFLQHDYPTDVISFPYELEPP-----MVEGELVASFETA-IENASEPSNP 113 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L E L+ ++HG LH++G+D + M E + ++ +GI P D Sbjct: 114 LSPREE--LLLYVVHGTLHIVGHDDQSPEPRAAMRRAEIAAMKLIGIELPLSND 165 >gi|313837274|gb|EFS74988.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL037PA2] gi|314928051|gb|EFS91882.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL044PA1] gi|314972045|gb|EFT16143.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL037PA3] gi|328907175|gb|EGG26941.1| metalloprotein, YbeY family [Propionibacterium sp. P08] Length = 155 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEII 111 ELS++ D +E + ++ G+ PT+VLSFP A + S +LGDIVL + Sbjct: 35 ELSIILIDEQTMEAYHEKFMGLPGPTDVLSFPMDEMRAPVDREDPPSGLLGDIVLCPTVT 94 Query: 112 EIEANVLGK 120 +A G+ Sbjct: 95 ARQAAENGR 103 >gi|255529923|ref|YP_003090295.1| hypothetical protein Phep_0007 [Pedobacter heparinus DSM 2366] gi|255342907|gb|ACU02233.1| protein of unknown function UPF0054 [Pedobacter heparinus DSM 2366] Length = 142 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM 100 S + +GY ++E L+ + + +N +Y D T+V++F A + Sbjct: 29 SAIAEEGYVLRE----LNFILCSDEYLLRINQDYLQHDTYTDVITFDNAEELK-----TI 79 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 +GDI ++ E ++ A L L ++IHG LHLLGY Sbjct: 80 VGDIFISIERVQENARALKLPVAEELCRVMIHGTLHLLGY 119 >gi|312129899|ref|YP_003997239.1| hypothetical protein Lbys_1166 [Leadbetterella byssophila DSM 17132] gi|311906445|gb|ADQ16886.1| protein of unknown function UPF0054 [Leadbetterella byssophila DSM 17132] Length = 152 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 6/108 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + EL+ +F + +N +Y T++++F + ++ GDI ++ + + Sbjct: 42 KKVGELNYIFLSDEDLLEINIQYLDHHTYTDIITFDNSEEEK-----MIEGDIFISVDRV 96 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME-GLERSI 158 A FE L+ ++ HG LHLLG ++D+ +M G E++I Sbjct: 97 RENAQTFKVSFEQELLRVMAHGVLHLLGLKDKTEEDSKLMRAGEEKAI 144 >gi|32473188|ref|NP_866182.1| hypothetical protein RB4579 [Rhodopirellula baltica SH 1] gi|46577385|sp|Q7USC9|RRMF_RHOBA RecName: Full=Probable rRNA maturation factor gi|32397867|emb|CAD73868.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 194 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 13/114 (11%) Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE-----ANV 117 D I +N E+ D PT+V+SFP ++ G++V ++E IE +N Sbjct: 61 DDATIHPINREFLQHDYPTDVISFPYELEPP-----MVEGELVASFETA-IENASEPSNP 114 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L E L+ ++HG LH++G+D + M E + ++ +GI P D Sbjct: 115 LSPREE--LLLYVVHGTLHIVGHDDQSPEPRAAMRRAEIAAMKLIGIELPLSND 166 >gi|84999364|ref|XP_954403.1| hypothetical protein [Theileria annulata] gi|65305401|emb|CAI73726.1| hypothetical protein, conserved [Theileria annulata] Length = 524 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 20/126 (15%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLS-----------FPTAFASSDGCSSLMLGDIV 105 L + D ++ +NFE G +KPT+++S F + LG+I Sbjct: 386 LDIFIEDEKNMKRINFEQFGGNKPTDIISLRDDLLYLKSDFHKNRSPLKPPEHYHLGEIF 445 Query: 106 LAYEIIEIEANVLG---------KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + +IE E + G + + ++ HG LHLLGYDH + M +E Sbjct: 446 ICPGVIESENMIRGGVAARMKGISDINIRMCFIMAHGILHLLGYDHEKAEWFREMAEMED 505 Query: 157 SILEDL 162 ++L++ Sbjct: 506 ALLDEF 511 >gi|255037549|ref|YP_003088170.1| hypothetical protein Dfer_3801 [Dyadobacter fermentans DSM 18053] gi|254950305|gb|ACT95005.1| protein of unknown function UPF0054 [Dyadobacter fermentans DSM 18053] Length = 146 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K SN S+GY + +L+ +F + +N +Y D T++++F + + Sbjct: 33 KNASN--SEGY----EVSQLNYIFCSDEYLLEINKQYLDHDYFTDIITFDNSEEDNQ--- 83 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + GDI ++ + + A +F+ + ++IHG LHL G+D + M E Sbjct: 84 --LEGDIYVSVDRVRENAATFHTDFDTEMRRVLIHGLLHLAGHDDTSEALKTAMRAKEDE 141 Query: 158 IL 159 L Sbjct: 142 YL 143 >gi|196001605|ref|XP_002110670.1| hypothetical protein TRIADDRAFT_54920 [Trichoplax adhaerens] gi|190586621|gb|EDV26674.1| hypothetical protein TRIADDRAFT_54920 [Trichoplax adhaerens] Length = 174 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 13/97 (13%) Query: 81 TNVLSFP--TAFASSDGCSSLM-----LGDIVLAYEII--EIEANVLGKEFENHLVHLII 131 T++LSFP +S S++ LGDI + ++I + ++L ++ + + Sbjct: 71 TDILSFPFHENLRASLSSKSILPWECDLGDIFICPKMICQRFDKSILQEQLPVY----VT 126 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG HLLGY H D+K M ER ILE + Y Sbjct: 127 HGICHLLGYIHDDEKSQIEMHIKERDILEKFNRANGY 163 >gi|160888660|ref|ZP_02069663.1| hypothetical protein BACUNI_01077 [Bacteroides uniformis ATCC 8492] gi|270295007|ref|ZP_06201208.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478000|ref|ZP_07937182.1| hypothetical protein HMPREF1007_00298 [Bacteroides sp. 4_1_36] gi|156861974|gb|EDO55405.1| hypothetical protein BACUNI_01077 [Bacteroides uniformis ATCC 8492] gi|270274254|gb|EFA20115.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905789|gb|EFV27561.1| hypothetical protein HMPREF1007_00298 [Bacteroides sp. 4_1_36] Length = 137 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 9/110 (8%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEI 110 + + E++ +F +I +N +Y D T++++F D C L GD+ ++ + Sbjct: 32 KRVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF-------DYCEGNRLSGDLFISLDT 84 Query: 111 IEIEANVLG-KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + A +E L +IIHG LHL G + + +ME E L Sbjct: 85 VRTNAEQFADNNYERELYRVIIHGILHLCGINDKGPGEREIMEEAENKAL 134 >gi|319953028|ref|YP_004164295.1| metalloprotease ybey [Cellulophaga algicola DSM 14237] gi|319421688|gb|ADV48797.1| metalloprotease ybeY [Cellulophaga algicola DSM 14237] Length = 139 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 8/101 (7%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS-LMLGDIVLAYEIIEIEA 115 LS +F D + +N +Y D T++++F D C + GD+ ++ E + A Sbjct: 36 LSYIFCDDAYLLDINMKYLDHDTYTDIVTF-------DYCEGDTIAGDLFISIERVLENA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +F L ++ HG LHL GY D DA +M E Sbjct: 89 KEYNVDFLEELHRVMSHGVLHLAGYKDKTDMDAALMRKKEE 129 >gi|194336788|ref|YP_002018582.1| protein of unknown function UPF0054 [Pelodictyon phaeoclathratiforme BU-1] gi|194309265|gb|ACF43965.1| protein of unknown function UPF0054 [Pelodictyon phaeoclathratiforme BU-1] Length = 139 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 9/112 (8%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + E + KAV ++ F E+IV V+ + I+ +N E+ G D PT+ ++F Sbjct: 10 KEIPEQLLEKAVLLVLENEGFTVESIVG---VYCGNKMIQRINREFLGHDYPTDTITFRY 66 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 + + G+ ++ ++++ A +F+ L+ + +H LHL+GY Sbjct: 67 NKGAE------IDGEFYISLDVVKENAARFSVDFQQELLRVTLHSALHLIGY 112 >gi|326798706|ref|YP_004316525.1| metalloprotease ybeY [Sphingobacterium sp. 21] gi|326549470|gb|ADZ77855.1| metalloprotease ybeY [Sphingobacterium sp. 21] Length = 144 Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S +F + +N EY D T++++F S D +++ GDI ++ + I+ A Sbjct: 40 EISFIFCSDEYLHKINVEYLNHDTYTDIITFDN---SED--ENVIAGDIFISIDRIKENA 94 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGY 140 + + L +IIHG LHL GY Sbjct: 95 KSFLVKEVDELHRVIIHGILHLCGY 119 >gi|167753840|ref|ZP_02425967.1| hypothetical protein ALIPUT_02125 [Alistipes putredinis DSM 17216] gi|167658465|gb|EDS02595.1| hypothetical protein ALIPUT_02125 [Alistipes putredinis DSM 17216] Length = 148 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ +F + R+ +N ++ G D T+V++F ++ G + ++ GDI + E + A Sbjct: 37 DVTYIFCSAARLLDMNRQFLGHDYYTDVITFD--YSDRKG-ARIVSGDIFIDVETVADNA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLG 139 G + +++HG LHL G Sbjct: 94 REYGAAKLTEMRRVVVHGLLHLCG 117 >gi|167737212|ref|ZP_02409986.1| hypothetical protein Bpse14_04051 [Burkholderia pseudomallei 14] Length = 39 Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Query: 132 HGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPY 168 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 1 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 38 >gi|307069660|ref|YP_003878137.1| hypothetical protein ZICARI_187 [Candidatus Zinderia insecticola CARI] gi|306482920|gb|ADM89791.1| hypothetical protein ZICARI_187 [Candidatus Zinderia insecticola CARI] Length = 139 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 5/90 (5%) Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +I+ +NF ++ TN+L+F + ++ +I + +I++ E + +N+ Sbjct: 43 KIKKINFTFKKKKNVTNILTFKNIYN-----KIIIDSNIYICLKILKKECKNKNIKLKNY 97 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 ++I+HG LH + H + K+ M+ E Sbjct: 98 FFYIIMHGILHSYNFKHNNFKNYKEMKKKE 127 >gi|313676469|ref|YP_004054465.1| hypothetical protein Ftrac_2379 [Marivirga tractuosa DSM 4126] gi|312943167|gb|ADR22357.1| protein of unknown function UPF0054 [Marivirga tractuosa DSM 4126] Length = 142 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 2/107 (1%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 I EL+ +F + +N ++ D T++++F S ++ + DI ++ + + Sbjct: 36 IDELNYIFCSDKFLHKINVDFLDHDTYTDIITFD--LKESTTGNNAIESDIFISIDRVTE 93 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A L F+ L ++ HG LHL+G++ + D M E +E Sbjct: 94 NAENLNLNFKEELARVMAHGLLHLIGFNDKSEADRQEMREAENKAIE 140 >gi|224005883|ref|XP_002291902.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972421|gb|EED90753.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 272 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 15/68 (22%) Query: 108 YEIIEIEAN-------------VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 YE IE+E + V E H+ LI+HG LHL+GYDH++D D +M Sbjct: 186 YEYIEVEVDEYDDRGVAPAMLKVYNPEIRLHM--LIVHGMLHLVGYDHIEDDDYELMVVR 243 Query: 155 ERSILEDL 162 E ++ +L Sbjct: 244 EDEVMAEL 251 >gi|212550624|ref|YP_002308941.1| hypothetical protein CFPG_267 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229554235|sp|B6YQQ8|RRMF_AZOPC RecName: Full=Probable rRNA maturation factor gi|212548862|dbj|BAG83530.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 139 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 6/107 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ +F + I +N Y D T++++F ++ D ++ GD+ +A ++I+ + Sbjct: 37 DITCIFCSNDEILRINNFYLNHDCYTDIITFD--YSKGD----IISGDLFIALDMIKYNS 90 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L +IIHG LHL G++ KD VM E LE + Sbjct: 91 MKYNVNYFEELYRVIIHGILHLCGFNDKLIKDIKVMREGENRALEKI 137 >gi|313206593|ref|YP_004045770.1| hypothetical protein Riean_1103 [Riemerella anatipestifer DSM 15868] gi|312445909|gb|ADQ82264.1| protein of unknown function UPF0054 [Riemerella anatipestifer DSM 15868] gi|315022088|gb|EFT35117.1| predicted metal-dependent hydrolase [Riemerella anatipestifer RA-YM] gi|325335965|gb|ADZ12239.1| uncharacterized protein family UPF0054 [Riemerella anatipestifer RA-GD] Length = 137 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 6/100 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ +F D + +N ++ D T++++F ++ + GDI ++ I A Sbjct: 35 KINYIFCDDEYLLKINQDHLQHDYYTDIITFDYVRGNT------ISGDIFVSLPRISDNA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + L K++++ + ++ HG LHL GY ++D M E Sbjct: 89 STLSKDYQSEFLRVLAHGVLHLCGYKDKTEEDIKEMRNKE 128 >gi|74001574|ref|XP_855646.1| PREDICTED: similar to UPF0054 protein C21orf57 isoform 2 [Canis familiaris] Length = 73 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 23/32 (71%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 +L L+ D+ ++ LN YRG D+PT+VLSFP Sbjct: 36 DLGLLCVDNEGMQRLNRAYRGDDRPTDVLSFP 67 >gi|284040393|ref|YP_003390323.1| hypothetical protein Slin_5558 [Spirosoma linguale DSM 74] gi|283819686|gb|ADB41524.1| protein of unknown function UPF0054 [Spirosoma linguale DSM 74] Length = 137 Score = 37.4 bits (85), Expect = 0.81, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 9/107 (8%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDI 104 ++GY ++ +L+ +F + +N +Y D T++++F + +G + GD+ Sbjct: 29 AEGY----SVGDLNYMFCSDEYLLQVNRDYLQHDYYTDIITFD--MSEEEG---KIEGDV 79 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 ++ E + AN L E + ++ HG LHL GY D++A +M Sbjct: 80 FVSVERVIDNANKLAVPAEQEMRRVLAHGLLHLCGYGDKTDEEAALM 126 >gi|221505230|gb|EEE30884.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 772 Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 21/31 (67%) Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L IH LHLLG+DH ++ DA ME +E ++ Sbjct: 413 LFIHAVLHLLGFDHEEEGDAREMEAVEEALF 443 >gi|300774540|ref|ZP_07084403.1| possible metal dependent hydrolase [Chryseobacterium gleum ATCC 35910] gi|300506355|gb|EFK37490.1| possible metal dependent hydrolase [Chryseobacterium gleum ATCC 35910] Length = 139 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 11/106 (10%) Query: 36 FAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + K + +LI S+G + + E++ +F D + +N +Y D T++++F + Sbjct: 17 YKKWLEDLILSEG----KKLGEINYIFCDDEYLLKINQDYLQHDYYTDIITFDYVKGKT- 71 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 + +I ++ + I A+ L +++E L ++ HG LHL GY Sbjct: 72 -----ISAEIFVSLQRISDNASTLSRDYEEELRRVLAHGILHLAGY 112 >gi|221483947|gb|EEE22251.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 776 Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 21/31 (67%) Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L IH LHLLG+DH ++ DA ME +E ++ Sbjct: 413 LFIHAVLHLLGFDHEEEGDAREMEAVEAAVF 443 >gi|313792245|gb|EFS40346.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA1] gi|315078119|gb|EFT50170.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL053PA2] gi|327453040|gb|EGE99694.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL092PA1] Length = 155 Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEII 111 ELS++ D +E + ++ G+ PT+VLSFP + S +LGDIVL + Sbjct: 35 ELSIILVDEETMEAYHEKFMGLPGPTDVLSFPMDEMRVPGDDEDPPSGLLGDIVLCPTVT 94 Query: 112 EIEANVLGK 120 +A G+ Sbjct: 95 ARQAAENGR 103 >gi|281204298|gb|EFA78494.1| transmembrane protein [Polysphondylium pallidum PN500] Length = 1924 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 12/61 (19%) Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANV---LGKEFENHLVHLIIHGFLHLLGYDH 142 FP F SDG +S + D V E++ NV L +EFEN + FLH LG DH Sbjct: 358 FPNHFKRSDGTTSFYVADTV------EVDNNVTRHLDEEFENDDWDAM---FLHYLGLDH 408 Query: 143 V 143 + Sbjct: 409 I 409 >gi|333029485|ref|ZP_08457546.1| metalloprotease ybeY [Bacteroides coprosuis DSM 18011] gi|332740082|gb|EGJ70564.1| metalloprotease ybeY [Bacteroides coprosuis DSM 18011] Length = 159 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 11/110 (10%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-SLMLGDIVLAYEIIEIE 114 E++ +F +I +N Y D T++++F D C +++ GD+ ++ + ++ Sbjct: 50 EIAYIFCSDEKILEVNRTYLQHDYYTDIITF-------DYCKGNIISGDLFISLDTVKTN 102 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + L IIHG LHL G ++DK E +E++ E L I Sbjct: 103 SEQFNTPYNEELHRTIIHGILHLCG---INDKGPGEREIMEQAENEALTI 149 >gi|150009548|ref|YP_001304291.1| hypothetical protein BDI_2961 [Parabacteroides distasonis ATCC 8503] gi|255013159|ref|ZP_05285285.1| hypothetical protein B2_04585 [Bacteroides sp. 2_1_7] gi|166228935|sp|A6LG55|RRMF_PARD8 RecName: Full=Probable rRNA maturation factor gi|149937972|gb|ABR44669.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 142 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 23/145 (15%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLI---SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 A + ++I L + KAVS I ++ Y K ++S +F +I +N +Y Sbjct: 4 AYYAEDIQL----PAIKKKAVSGWIKAVAETYGKKTG--DISYIFCSDEKILEVNRQYLQ 57 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 D T++++F + + GD+ ++ + + A ++ L IIHG LH Sbjct: 58 HDYYTDIITFDYTEGNK------ISGDLFISLDTVRTNAETFHTDYNEELHRTIIHGILH 111 Query: 137 LLGYDHVDDKDACVMEGLERSILED 161 L G ++DK ER I+E+ Sbjct: 112 LCG---INDKGPG-----EREIMEE 128 >gi|298373953|ref|ZP_06983911.1| metalloprotease [Bacteroides sp. 3_1_19] gi|298268321|gb|EFI09976.1| metalloprotease [Bacteroides sp. 3_1_19] Length = 142 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 23/145 (15%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLI---SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 A + ++I L + KAVS I ++ Y K ++S +F +I +N +Y Sbjct: 4 AYYAEDIQL----PAIKKKAVSGWIKAVAETYGKKTG--DISYIFCSDEKILEVNRQYLQ 57 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 D T++++F + + GD+ ++ + + A ++ L IIHG LH Sbjct: 58 HDYYTDIITFDYTEGNK------ISGDLFISLDTVRTNAETFHTDYNEELHRTIIHGILH 111 Query: 137 LLGYDHVDDKDACVMEGLERSILED 161 L G ++DK ER I+E+ Sbjct: 112 LCG---INDKGPG-----EREIMEE 128 >gi|261749198|ref|YP_003256883.1| hypothetical protein BPLAN_108 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497290|gb|ACX83740.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 137 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++ +F + H + LN +Y D T+V++F A++S+ S GD+ ++ + + + Sbjct: 37 INYIFCNDHYLLNLNKKYLQKDYYTDVIAF--AYSSTPPNIS---GDVFISIDRVLENSQ 91 Query: 117 VLGKEFENHLVHLIIHGFLHLLGY-DHVDDK 146 + F+ L ++IH LH LGY D +++K Sbjct: 92 QWNQLFQVELKRVMIHAILHFLGYEDRINEK 122 >gi|237836653|ref|XP_002367624.1| phosphopantethiene--protein transferase domain containing protein [Toxoplasma gondii ME49] gi|211965288|gb|EEB00484.1| phosphopantethiene--protein transferase domain containing protein [Toxoplasma gondii ME49] Length = 772 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 21/31 (67%) Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L IH LHLLG+DH ++ DA ME +E ++ Sbjct: 413 LFIHAVLHLLGFDHEEEGDAREMEAVEAALF 443 >gi|58700115|ref|ZP_00374639.1| metal-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58533369|gb|EAL57844.1| metal-binding protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 35 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 20/31 (64%) Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LHLLGYDH + +M+ LER IL LG N Sbjct: 1 LHLLGYDHQKKDEEIIMKNLEREILASLGYN 31 >gi|325286234|ref|YP_004262024.1| metalloprotease ybeY [Cellulophaga lytica DSM 7489] gi|324321688|gb|ADY29153.1| metalloprotease ybeY [Cellulophaga lytica DSM 7489] Length = 139 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ +F D + +N +Y D T++++F +DG ++ DI ++ E ++ A Sbjct: 35 DINYIFCDDSYLLNINQQYLNHDTYTDIITFD----YTDG--KVISSDIYISVERVKENA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +F+ ++ ++ HG LHL GY ++A +M E Sbjct: 89 VDFKVDFDVEMLRVMAHGLLHLAGYKDKSTEEAALMRSKE 128 >gi|300770444|ref|ZP_07080323.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33861] gi|300762920|gb|EFK59737.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33861] Length = 142 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDI 104 S+G+ + + EL+ +F+ + +N +Y D T++++F S + GDI Sbjct: 31 SEGF---KRVGELNFIFSSDAYLLEINKQYLNHDTFTDIVTF-----DSSEEEDTIAGDI 82 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 ++ E I+ A + L ++IHG LHL GY Sbjct: 83 FISIERIQDNAEKFKVAERDELHRVVIHGVLHLCGY 118 >gi|91215358|ref|ZP_01252329.1| hypothetical protein P700755_09598 [Psychroflexus torquis ATCC 700755] gi|91186310|gb|EAS72682.1| hypothetical protein P700755_09598 [Psychroflexus torquis ATCC 700755] Length = 143 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 6/105 (5%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 ++ + EL+ VF + +N Y D T++++F + D S+ +I ++ + Sbjct: 33 QKTLGELTYVFCSDEYLLDINQSYLQHDTLTDIITFD--YTEGDSIST----EIYISIDR 86 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 ++ A G +FE L ++ HG LH GY + ++ +M E Sbjct: 87 VKENAEEFGVDFEKELKRVMAHGVLHCCGYKDLTQEEKDLMRAKE 131 >gi|110639867|ref|YP_680077.1| hypothetical protein CHU_3501 [Cytophaga hutchinsonii ATCC 33406] gi|123354224|sp|Q11PC9|RRMF_CYTH3 RecName: Full=Probable rRNA maturation factor gi|110282548|gb|ABG60734.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 143 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 + LR E+ + N I+K K +I+EL+ +F + +N ++ D T+++ Sbjct: 14 QYQLRQRAEI---RTWLNTIAKK--EKYSILELNYIFCSDEYLLQMNRDFLDHDYYTDII 68 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F + + GDI ++ + ++ A + ++ L ++ HG LHL GY Sbjct: 69 TFDNS-----EVKGKIEGDIFISIDRVKDNAQLQHSTVKDELHRVLAHGLLHLTGYKDKT 123 Query: 145 DKDACVMEGLERSIL 159 K+ +M E + L Sbjct: 124 TKEKEMMRAKEDASL 138 >gi|322502702|emb|CBZ37785.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 213 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIV 105 LSL F + LN +Y+G D+PT+VL+F A + + L+ GD + Sbjct: 37 TRLSLEFVSLAHMRQLNCKYKGSDRPTDVLTFTPAGEADSFVNDLLFGDFL 87 >gi|262383157|ref|ZP_06076294.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296035|gb|EEY83966.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 143 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 14/106 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++S +F +I +N +Y D T++++F + + GD+ ++ + + A Sbjct: 37 DISYIFCSDEKILEVNRQYLQHDYYTDIITFDYTEGNK------ISGDLFISLDTVRTNA 90 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 ++ L IIHG LHL G ++DK ER I+E+ Sbjct: 91 ETFHTDYNEELHRTIIHGILHLCG---INDKGPG-----EREIMEE 128 >gi|227538918|ref|ZP_03968967.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33300] gi|227241121|gb|EEI91136.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33300] Length = 142 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDI 104 S+G+ + + EL+ +F+ + +N +Y D T++++F S + GDI Sbjct: 31 SEGF---KRVGELNFIFSSDAYLLEINKQYLNHDTFTDIVTF-----DSSEEEDTIAGDI 82 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 ++ E I+ A + L ++IHG LHL GY Sbjct: 83 FISIERIQDNAEKFKVAERDELHRVVIHGVLHLCGY 118 >gi|256838280|ref|ZP_05543790.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739199|gb|EEU52523.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 142 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 14/106 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++S +F +I +N +Y D T++++F + + GD+ ++ + + A Sbjct: 37 DISYIFCSDEKILEVNRQYLQHDYYTDIITFDYTEGNK------ISGDLFISLDTVRTNA 90 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 ++ L IIHG LHL G ++DK ER I+E+ Sbjct: 91 ETFHTDYNEELHRTIIHGILHLCG---INDKGPG-----EREIMEE 128 >gi|301311742|ref|ZP_07217667.1| putative metalloprotease [Bacteroides sp. 20_3] gi|300830302|gb|EFK60947.1| putative metalloprotease [Bacteroides sp. 20_3] Length = 143 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 14/106 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++S +F +I +N +Y D T++++F + + GD+ ++ + + A Sbjct: 37 DISYIFCSDEKILEVNRQYLQHDYYTDIITFDYTEGNK------ISGDLFISLDTVRTNA 90 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 ++ L IIHG LHL G ++DK ER I+E+ Sbjct: 91 ETFHTDYNEELHRTIIHGILHLCG---INDKGPG-----EREIMEE 128 >gi|169840971|ref|ZP_02874084.1| Hypothetical Metal-Binding Protein [candidate division TM7 single-cell isolate TM7a] Length = 34 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 15/27 (55%), Positives = 19/27 (70%) Query: 133 GFLHLLGYDHVDDKDACVMEGLERSIL 159 G LHLLGYDH++++D VM E IL Sbjct: 1 GMLHLLGYDHIEEEDKAVMRRREEEIL 27 >gi|78189140|ref|YP_379478.1| hypothetical protein Cag_1173 [Chlorobium chlorochromatii CaD3] gi|123579746|sp|Q3ARE0|RRMF_CHLCH RecName: Full=Probable rRNA maturation factor gi|78171339|gb|ABB28435.1| Protein of unknown function UPF0054 [Chlorobium chlorochromatii CaD3] Length = 156 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 6/107 (5%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 I ++ V+ + + +N +Y D PT+ ++F S+G + G+ ++ ++I Sbjct: 33 IATITGVYCGNRMSQRINRDYLNHDYPTDTITF----CYSEG--KAIEGEFYISLDVIRC 86 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A FE L+ + IH LHL G + ++ M+ E L+ Sbjct: 87 NARHFNVTFEEELLRVTIHSALHLTGMNDYLPEERVAMQAKEDYYLQ 133 >gi|323698302|ref|ZP_08110214.1| protein of unknown function UPF0054 [Desulfovibrio sp. ND132] gi|323458234|gb|EGB14099.1| protein of unknown function UPF0054 [Desulfovibrio desulfuricans ND132] Length = 164 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 15/97 (15%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-------------MLGDIV 105 L D I LN E+ G PTN+LSFP DG +L LG++ Sbjct: 46 LKLVDDREIARLNREFLGCTGPTNILSFPAR--DGDGTDALADGEVGDPEDDGEFLGELA 103 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 L+ + + E ++ G+ HL L+ HG LHL G+DH Sbjct: 104 LSVDALARETDLYGQLPLEHLARLLAHGLLHLAGFDH 140 >gi|332872342|ref|XP_003319178.1| PREDICTED: rRNA maturation factor homolog isoform 3 [Pan troglodytes] gi|332872344|ref|XP_003319179.1| PREDICTED: rRNA maturation factor homolog isoform 4 [Pan troglodytes] Length = 121 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI L Sbjct: 36 DLGIICVDNKNIQHINRVYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIFLGV 95 Query: 109 EII 111 E I Sbjct: 96 EYI 98 >gi|308809559|ref|XP_003082089.1| unnamed protein product [Ostreococcus tauri] gi|116060556|emb|CAL55892.1| unnamed protein product [Ostreococcus tauri] Length = 470 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 +ELS+ I +LN YR D T+VLSFP A S G ++ LGD+V++ + + Sbjct: 84 MELSVALCSDEYIRSLNAGYRQKDSATDVLSFP---AESFGPMAV-LGDVVVSVDTAATQ 139 Query: 115 AN 116 A Sbjct: 140 AR 141 >gi|223940463|ref|ZP_03632314.1| protein of unknown function UPF0054 [bacterium Ellin514] gi|223890866|gb|EEF57376.1| protein of unknown function UPF0054 [bacterium Ellin514] Length = 159 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T+V++F ++ S G L +G++ + + ++A +++ + I+HG LHL G Sbjct: 63 STDVITFD--YSDSPGSEPL-IGELFICVDEALVQAIRFKTTWQSETMRYIVHGLLHLKG 119 Query: 140 YDHVDDKDACVMEGLERSILEDLGIN 165 YD ++ M+ E +L++L + Sbjct: 120 YDDLETTARRKMKREENKLLKELRVR 145 >gi|326335988|ref|ZP_08202165.1| metal dependent hydrolase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691952|gb|EGD33914.1| metal dependent hydrolase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 138 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 6/85 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++ +F + + +N +Y D T++++F G + + DI ++ E ++ A Sbjct: 36 DINYIFCNDEYLHKINVDYLQHDTLTDIITFDY------GKDNTLSSDIYISVERVKENA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGY 140 G + L+ ++ HG LHL GY Sbjct: 90 QEYGVDLPTELLRVMAHGILHLCGY 114 >gi|54607074|ref|NP_001006114.1| rRNA maturation factor homolog isoform 2 [Homo sapiens] gi|55824657|gb|AAH22828.2| Chromosome 21 open reading frame 57 [Homo sapiens] gi|110645888|gb|AAI19771.1| Chromosome 21 open reading frame 57 [Homo sapiens] gi|114108258|gb|AAI22866.1| Chromosome 21 open reading frame 57 [Homo sapiens] gi|119629694|gb|EAX09289.1| chromosome 21 open reading frame 57, isoform CRA_b [Homo sapiens] gi|124297721|gb|AAI31554.1| Chromosome 21 open reading frame 57 [Homo sapiens] gi|221040460|dbj|BAH11937.1| unnamed protein product [Homo sapiens] Length = 121 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI L Sbjct: 36 DLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIFLGV 95 Query: 109 EII 111 E I Sbjct: 96 EYI 98 >gi|301092866|ref|XP_002997284.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4] gi|262111419|gb|EEY69471.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4] Length = 1287 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 15/70 (21%) Query: 75 RGIDKPTNVLSFPTAFASSDG-CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 R + KP VL AF+S D C +L V+GKEF N + LI H Sbjct: 1196 RSLLKPARVLILDEAFSSVDQECDKKLL--------------TVVGKEFANSTIFLITHR 1241 Query: 134 FLHLLGYDHV 143 +LG+D + Sbjct: 1242 LDQVLGFDRI 1251 >gi|116255645|ref|YP_771478.1| hypothetical protein pRL110444 [Rhizobium leguminosarum bv. viciae 3841] gi|115260293|emb|CAK03397.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 442 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%) Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG-- 133 G D S P A A+ D S+ ML + ++A +E +V + +V +I G Sbjct: 173 GTDSELKADSAPIALATDDATSAKMLMEALIAAPTFNLERSVGKAQGLGDVVSGLISGPR 232 Query: 134 -----FLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 FL+ L Y + + V E L +S+L L + P Sbjct: 233 AAVARFLNQLTYYEMKKRAGIVGEALTKSVLSKLVLQQP 271 >gi|94987342|ref|YP_595275.1| metal-dependent hydrolase [Lawsonia intracellularis PHE/MN1-00] gi|145558844|sp|Q1MPX3|RRMF_LAWIP RecName: Full=Probable rRNA maturation factor gi|94731591|emb|CAJ54954.1| predicted metal-dependent hydrolase [Lawsonia intracellularis PHE/MN1-00] Length = 133 Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 21 LWGDEIHLRTL--CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 L G+E H+ L C + F + ++S F K +E+ LV +D+ I N Y Sbjct: 5 LLGNE-HIWKLPFCRLEFVAILEKMLS---FAKLQTIEVYLV-SDT-TIAFFNLHYMNCL 58 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 TNVLSFP D + G I+L+ + + E+ + + ++ + L+ HG H+ Sbjct: 59 GITNVLSFP--MDDED-----LAGSIILSVDAVCRESLLYRQPILDYCLSLLSHGIAHIA 111 Query: 139 GYDHVDDKD 147 GY H + D Sbjct: 112 GYTHGVEMD 120 >gi|213027668|ref|ZP_03342115.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 36 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 22/34 (64%) Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +LGD+++ +++E EA K E H H+++HG Sbjct: 3 LLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHG 36 >gi|297621266|ref|YP_003709403.1| hypothetical protein wcw_1038 [Waddlia chondrophila WSU 86-1044] gi|297376567|gb|ADI38397.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044] Length = 153 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 4/104 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI-IEIE 114 E+S+ F D+ I L+ + T+ +SFP G +LG++ + + I+ Sbjct: 36 EVSIQFVDTQMICDLHHRFFNDPTVTDCISFPIDQDGDTG--YRVLGEVFVCPKTGIDYA 93 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L +E ++ IIHG LHL+GYD + + + + E +R + Sbjct: 94 QEHLKNPYEEISLY-IIHGLLHLMGYDDIGEDEPRMREAEKRHL 136 >gi|15835320|ref|NP_297079.1| hypothetical protein TC0705 [Chlamydia muridarum Nigg] gi|270285492|ref|ZP_06194886.1| hypothetical protein CmurN_03563 [Chlamydia muridarum Nigg] gi|270289504|ref|ZP_06195806.1| hypothetical protein CmurW_03658 [Chlamydia muridarum Weiss] gi|301336889|ref|ZP_07225091.1| hypothetical protein CmurM_03620 [Chlamydia muridarum MopnTet14] gi|62901393|sp|Q9PJX1|RRMF_CHLMU RecName: Full=Probable rRNA maturation factor gi|7190736|gb|AAF39519.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 161 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 22/109 (20%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 F+D +T+ ID+P + SFP +LG+ A+ LG+ Sbjct: 63 FSDPSLTDTITL---PIDRP-GIQSFPH-----------VLGE---AFVSPRAAMRFLGQ 104 Query: 121 EFENHLVH----LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E L H ++H LH+LGYD D+D +M E S L L N Sbjct: 105 YTEAQLYHEISRYVVHSLLHMLGYDDQTDEDKRIMREQEDSSLTFLAQN 153 >gi|119629699|gb|EAX09294.1| chromosome 21 open reading frame 57, isoform CRA_f [Homo sapiens] Length = 144 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-------TAFASSDGCSSLMLGDIVLAY 108 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI L Sbjct: 36 DLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIFLGV 95 Query: 109 EII 111 E I Sbjct: 96 EYI 98 >gi|146099524|ref|XP_001468666.1| hypothetical protein [Leishmania infantum] gi|134073034|emb|CAM71753.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 213 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIV 105 L+L F + LN +Y+G D+PT+VL+F A + + L+ GD + Sbjct: 37 TRLNLEFVSLAHMRQLNCKYKGSDRPTDVLTFTPAGEADSFVNDLLFGDFL 87 >gi|255536700|ref|YP_003097071.1| predicted metal-dependent hydrolase [Flavobacteriaceae bacterium 3519-10] gi|255342896|gb|ACU09009.1| predicted metal-dependent hydrolase [Flavobacteriaceae bacterium 3519-10] Length = 142 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 11/109 (10%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L+ VF + +N EY D T++++F + + GDI ++ I A Sbjct: 43 LNYVFCSDEYLLKINREYLDHDYLTDIITFDYVKGKT------VSGDIFVSLHRISENAL 96 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + F+ L+ + HG LHL GY KD +E E ED IN Sbjct: 97 LHDNSFDTELLRVTAHGLLHLCGY-----KDKTEVEISEMRSKEDFYIN 140 >gi|86144117|ref|ZP_01062454.1| hypothetical protein MED217_18401 [Leeuwenhoekiella blandensis MED217] gi|85829379|gb|EAQ47844.1| hypothetical protein MED217_18401 [Leeuwenhoekiella blandensis MED217] Length = 137 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 I L VF + +N ++ D T++++F ++G +++ G+I ++ + + Sbjct: 33 IDSLGYVFCSDDFLLEINQQFLDHDTLTDIVTFDY----TEG--TILNGEIYISTDRVAD 86 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGY-DHVDDK 146 A +F+ L +IIHG LH+ GY D DD+ Sbjct: 87 NAKDFNVDFDTELRRVIIHGLLHMCGYGDKTDDE 120 >gi|213422920|ref|ZP_03355946.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 36 Score = 34.3 bits (77), Expect = 6.7, Method: Compositional matrix adjust. Identities = 15/29 (51%), Positives = 19/29 (65%) Query: 140 YDHVDDKDACVMEGLERSILEDLGINDPY 168 YDH+DD +A ME LE I+ +G DPY Sbjct: 1 YDHIDDDEAEEMESLETEIMLAMGYEDPY 29 >gi|297597588|ref|NP_001044196.2| Os01g0739400 [Oryza sativa Japonica Group] gi|255673671|dbj|BAF06110.2| Os01g0739400 [Oryza sativa Japonica Group] Length = 251 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S++ + + I+ LN E+RG D +LS D LMLGDIV++ E + Sbjct: 171 VEVSVLLCNDNFIQNLNKEWRGEDSCIEMLSMSQYIPDLD-VPILMLGDIVISVETAARQ 229 Query: 115 ANVLG 119 A G Sbjct: 230 AEERG 234 >gi|156098161|ref|XP_001615113.1| holo-(acyl-carrier protein) synthase [Plasmodium vivax SaI-1] gi|148803987|gb|EDL45386.1| holo-(acyl-carrier protein) synthase, putative [Plasmodium vivax] Length = 511 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 24/130 (18%) Query: 19 NALWGDEIHLRTLCEVV------------FAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 N +WG L E+V F K V LI + ++ +L++ F Sbjct: 29 NPMWGGNYERNGLLEIVNNQTEVPIDLAHFEKEVRKLI---HLMRFEDFQLNITFVSLKE 85 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCS---------SLMLGDIVLAYEIIEIEANV 117 ++ +N +RG ++PT+V+S S +G S L GDI L I E + Sbjct: 86 MKEVNRTHRGKNEPTDVISLLHCVHSGEGVSPGGDFASGGGLRSGDIYLCPAYISRECVL 145 Query: 118 LGKEFENHLV 127 +E L+ Sbjct: 146 ARVRYERGLL 155 Searching..................................................done Results from round 2 >gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] gi|254040104|gb|ACT56900.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 171/171 (100%), Positives = 171/171 (100%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV Sbjct: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK Sbjct: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD Sbjct: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 >gi|222147353|ref|YP_002548310.1| hypothetical protein Avi_0440 [Agrobacterium vitis S4] gi|254803905|sp|B9JZJ4|RRMF_AGRVS RecName: Full=Probable rRNA maturation factor gi|221734343|gb|ACM35306.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 167 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 73/162 (45%), Positives = 96/162 (59%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + +LD+QIA+E W DE L L + A + ++G E+SLVFT I Sbjct: 1 MKKLDVQIAIEADGWPDEAELEALSTRILDHAADFIAAEGQPFAPMPAEVSLVFTGDTEI 60 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + +N E+RG DKPTNVLSFP MLGDIV+A + +E EA L K +HL Sbjct: 61 QAINSEWRGQDKPTNVLSFPAYPIEPGDKPGPMLGDIVIARQTVEREAAELEKTITDHLT 120 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHL GYDH+ + +A MEGLE IL LG++DPY Sbjct: 121 HLMVHGFLHLFGYDHMTEDEAEEMEGLETRILAGLGLSDPYA 162 >gi|241202783|ref|YP_002973879.1| hypothetical protein Rleg_0029 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856673|gb|ACS54340.1| protein of unknown function UPF0054 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 171 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 79/163 (48%), Positives = 102/163 (62%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHR 66 + LD+QI+VE+ W E L + CE V AV L S+ E+SLVFTD Sbjct: 1 MAELDIQISVEDIGWPGEETLLSFCERVLGAAVVYLSDSEKQPFPTLPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA L K F++HL Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETLEREAAELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|86356031|ref|YP_467923.1| hypothetical protein RHE_CH00374 [Rhizobium etli CFN 42] gi|123513247|sp|Q2KD90|RRMF_RHIEC RecName: Full=Probable rRNA maturation factor gi|86280133|gb|ABC89196.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 171 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 101/163 (61%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDSHR 66 + LD+QI++E+ W E L CE V A L + + E+SLVFTD Sbjct: 1 MAELDIQISIEDIGWPGEETLLVFCERVLGAAAIYLRDNEKQPFPKMPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DKPTNVLSFP MLGDI++A E +E EA L K F++HL Sbjct: 61 IQDINAEWRGKDKPTNVLSFPAFPVQRGKVPGPMLGDIIIARETVEREAQELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH+++ +A MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNNAEAETMEGLETRILAQLGLSDPYE 163 >gi|116250162|ref|YP_766000.1| hypothetical protein RL0393 [Rhizobium leguminosarum bv. viciae 3841] gi|145558823|sp|Q1MMB8|RRMF_RHIL3 RecName: Full=Probable rRNA maturation factor gi|115254810|emb|CAK05884.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 171 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 100/163 (61%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIV-ELSLVFTDSHR 66 + LD+QI+VE+ W E L + CE V A L + E+SLVFTD Sbjct: 1 MAELDIQISVEDIGWPGEETLLSFCERVLGAAAVYLRDSEKQPFPTMAPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA L K F++HL Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETLEREAAELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|190890044|ref|YP_001976586.1| hypothetical protein RHECIAT_CH0000414 [Rhizobium etli CIAT 652] gi|238692546|sp|B3PZB4|RRMF_RHIE6 RecName: Full=Probable rRNA maturation factor gi|190695323|gb|ACE89408.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 171 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 78/163 (47%), Positives = 102/163 (62%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVF-AKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + LD+QI++EN W +E L C V A AV S+ E+SLVFTD Sbjct: 1 MAELDIQISIENIGWPEEETLLAFCGRVLGAAAVYLRDSEKQPFPTMPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA+ L K F++HL Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETVEREAHELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|327188595|gb|EGE55805.1| hypothetical protein RHECNPAF_850041 [Rhizobium etli CNPAF512] Length = 171 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 78/163 (47%), Positives = 102/163 (62%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVF-AKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + LD+QI++EN W +E L C V A AV S+ E+SLVFTD Sbjct: 1 MAELDIQISIENIGWPEEETLLAFCGHVLGAAAVYLRDSEKQPFPTLPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA+ L K F++HL Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETVEREAHELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNSAEAEIMEGLETRILAQLGLSDPYE 163 >gi|15964160|ref|NP_384513.1| hypothetical protein SMc01113 [Sinorhizobium meliloti 1021] gi|307301305|ref|ZP_07581067.1| protein of unknown function UPF0054 [Sinorhizobium meliloti BL225C] gi|307317976|ref|ZP_07597413.1| protein of unknown function UPF0054 [Sinorhizobium meliloti AK83] gi|26006908|sp|Q92SI5|RRMF_RHIME RecName: Full=Probable rRNA maturation factor gi|15073336|emb|CAC41844.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306896378|gb|EFN27127.1| protein of unknown function UPF0054 [Sinorhizobium meliloti AK83] gi|306903761|gb|EFN34348.1| protein of unknown function UPF0054 [Sinorhizobium meliloti BL225C] Length = 168 Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 77/159 (48%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIET 69 LD+QI+VE W E L++ CE V A L + + ELSLVFTD I Sbjct: 4 LDIQISVEAGDWPPEDELQSFCERVLEAAADFLAREENQPLPAQAAELSLVFTDDQSIRA 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+RG DK TNVLSFP + MLGDIV+A+E + EA L K F+ HL HL Sbjct: 64 INAEWRGQDKATNVLSFPAFPVTPGRMPGPMLGDIVVAHETLRREAAELEKPFDAHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HGFLHL GYDH++D +A MEGLE IL LG++DPY Sbjct: 124 LVHGFLHLFGYDHIEDDEAERMEGLETRILARLGLSDPY 162 >gi|209547629|ref|YP_002279546.1| hypothetical protein Rleg2_0017 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226701630|sp|B5ZMX9|RRMF_RHILW RecName: Full=Probable rRNA maturation factor gi|209533385|gb|ACI53320.1| protein of unknown function UPF0054 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 171 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 77/163 (47%), Positives = 101/163 (61%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNL-ISKGYFVKENIVELSLVFTDSHR 66 + LD+QI+V++ W E L + CE V AV L S+ E+SLVFTD Sbjct: 1 MAELDIQISVDDIGWPGEETLLSFCERVLGAAVIYLRDSEKQPFPTMPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N E+RG DK TNVLSFP MLGDI++A E +E E L K F++HL Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVRPGKMPGPMLGDIIIARETVERETIELEKSFDDHL 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 121 THLLVHGFLHLLGYDHMNSDEAEIMEGLETRILAQLGLSDPYE 163 >gi|222084695|ref|YP_002543224.1| hypothetical protein Arad_0658 [Agrobacterium radiobacter K84] gi|221722143|gb|ACM25299.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 169 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 75/163 (46%), Positives = 99/163 (60%), Gaps = 1/163 (0%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDSHR 66 + LD+QI+VE W E L+ L E V A + L + + +E+SLVFTD Sbjct: 2 MAELDIQISVEEGDWPSEDVLQALAERVLGVAAAYLKKNEKQPFPKTALEVSLVFTDDAA 61 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I +N E+R DK TNVLSFP G MLGDI++A E +E EA L K F++HL Sbjct: 62 IREINAEWREQDKATNVLSFPAFPLVPGGKPGPMLGDIIIARETVEREAVELEKSFDDHL 121 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HGFLHL GYDH+++ +A MEGLE IL LG++DPY Sbjct: 122 THLMVHGFLHLFGYDHMNNSEAERMEGLETRILAGLGLSDPYA 164 >gi|153008092|ref|YP_001369307.1| hypothetical protein Oant_0756 [Ochrobactrum anthropi ATCC 49188] gi|166228855|sp|A6WWX4|RRMF_OCHA4 RecName: Full=Probable rRNA maturation factor gi|151559980|gb|ABS13478.1| protein of unknown function UPF0054 [Ochrobactrum anthropi ATCC 49188] Length = 162 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 81/160 (50%), Positives = 95/160 (59%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I VE W DE L L A +NL +K ELS+VFTD I+TL Sbjct: 6 IHIDIMVEAGNWPDETALEGLVRKSVEAAWANL-----GLKSAASELSVVFTDDASIQTL 60 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + MLGDI++A E +E EA GK ENHL HL+ Sbjct: 61 NAEWRGKDKPTNVLSFPAFPVKAGAQPGPMLGDIIIARETVEREAREEGKPLENHLAHLV 120 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D +A VMEG ER IL L I DPY V Sbjct: 121 VHGFLHLLGYDHETDAEAEVMEGREREILHALAIPDPYAV 160 >gi|306843573|ref|ZP_07476174.1| conserved hypothetical protein [Brucella sp. BO1] gi|306276264|gb|EFM57964.1| conserved hypothetical protein [Brucella sp. BO1] Length = 195 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 80/160 (50%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W DE L +L A A +NL +K ELS+VFTD I+ L Sbjct: 33 IHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLL 87 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL+ Sbjct: 88 NGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLV 147 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 148 VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 187 >gi|189025205|ref|YP_001935973.1| Diacyglycerol kinase [Brucella abortus S19] gi|237816495|ref|ZP_04595488.1| conserved hypothetical protein [Brucella abortus str. 2308 A] gi|189020777|gb|ACD73499.1| Diacyglycerol kinase [Brucella abortus S19] gi|237788562|gb|EEP62777.1| conserved hypothetical protein [Brucella abortus str. 2308 A] Length = 190 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 80/160 (50%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W DE L +L A A +NL +K ELS+VFTD I+ L Sbjct: 28 IHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLL 82 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL+ Sbjct: 83 NGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLV 142 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 143 VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 182 >gi|306837707|ref|ZP_07470576.1| conserved hypothetical protein [Brucella sp. NF 2653] gi|306407265|gb|EFM63475.1| conserved hypothetical protein [Brucella sp. NF 2653] Length = 195 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 79/160 (49%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W DE L +L A A +NL +K ELS+VFTD I+ L Sbjct: 33 IHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLL 87 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + +LGDIV+A E +E EA GK ENHL HL+ Sbjct: 88 NGEWRGKDKPTNVLSFPAFPVKAGSQPGPLLGDIVIARETVEREAKEEGKPIENHLSHLV 147 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 148 VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 187 >gi|227820630|ref|YP_002824600.1| hypothetical protein NGR_c00430 [Sinorhizobium fredii NGR234] gi|254799468|sp|C3MF10|RRMF_RHISN RecName: Full=Probable rRNA maturation factor gi|227339629|gb|ACP23847.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 173 Score = 203 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 77/159 (48%), Positives = 100/159 (62%), Gaps = 1/159 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKG-YFVKENIVELSLVFTDSHRIET 69 LD+QI+VE W E L+ L + V+ LI++ ++ ELSLVFTD I Sbjct: 4 LDIQISVEEGDWPSEDELQGLSTRILDVTVAFLIAEEKQPFPDDPPELSLVFTDDQSIRE 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+R DKPTNVLSFP + MLGDI++AYE +E EA + K FE HL HL Sbjct: 64 INAEWRNQDKPTNVLSFPAFPVTPGNMPGPMLGDIIVAYETLEREAAEMEKPFEEHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HGFLHL GYDH++D +A MEGLE IL LG++DPY Sbjct: 124 LVHGFLHLFGYDHIEDDEAERMEGLETRILARLGLSDPY 162 >gi|37197841|dbj|BAC93679.1| predicted metal-dependent hydrolase [Vibrio vulnificus YJ016] Length = 250 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE D+ L + A+ + K + E+++ DS Sbjct: 100 ELDLQLAVE-----DQNGLPS------AQDFQTWLDKTIPPFQPQAEVTIRIVDSQESHQ 148 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K H H+ Sbjct: 149 LNHDYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEQEAIEQDKPLMAHWAHM 206 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 207 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPYLAE 248 >gi|150395270|ref|YP_001325737.1| hypothetical protein Smed_0042 [Sinorhizobium medicae WSM419] gi|166227780|sp|A6U5H2|RRMF_SINMW RecName: Full=Probable rRNA maturation factor gi|150026785|gb|ABR58902.1| protein of unknown function UPF0054 [Sinorhizobium medicae WSM419] Length = 168 Score = 202 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 78/159 (49%), Positives = 99/159 (62%), Gaps = 1/159 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKG-YFVKENIVELSLVFTDSHRIET 69 LD+QI+VE W E L++ EVV A L + + ELSLVFTD I+ Sbjct: 4 LDIQISVEAGDWPPEDELQSFSEVVLEAAADFLAREERQPLSAEAAELSLVFTDDQSIKA 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+RG DKPTNVLSFP + LMLGDIV+A+E + EA L K F+ HL HL Sbjct: 64 INAEWRGQDKPTNVLSFPAFPVTPGKMPGLMLGDIVVAHETLRREAAELEKPFDAHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HGFLHL GYDH++D +A ME LE IL LG++DPY Sbjct: 124 LVHGFLHLFGYDHIEDDEAERMERLETRILARLGLSDPY 162 >gi|315122127|ref|YP_004062616.1| hypothetical protein CKC_01885 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495529|gb|ADR52128.1| hypothetical protein CKC_01885 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 163 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 112/166 (67%), Positives = 136/166 (81%), Gaps = 3/166 (1%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N P+L+L IAVE+ LWG++ L LCEVV AKA+S L SK F E+ +E+S VFTDS+ Sbjct: 1 MNPPKLNLHIAVESELWGEDFDLSVLCEVVLAKAISFLTSKKDFSLED-IEVSFVFTDSN 59 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 RI+ LN +YRGIDKPTNVLSFP+ +S S MLGDIVLAYE++E EANVLGK+F++H Sbjct: 60 RIKELNAQYRGIDKPTNVLSFPSVLSSE--YSGAMLGDIVLAYEVMEAEANVLGKKFKDH 117 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LVHLIIHGFLHLL YDHVDD+DA +MEGLERSIL DLGI+DPYE+D Sbjct: 118 LVHLIIHGFLHLLRYDHVDDEDARLMEGLERSILADLGIDDPYELD 163 >gi|17988257|ref|NP_540891.1| diacyglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|161620064|ref|YP_001593951.1| hypothetical protein BCAN_A2198 [Brucella canis ATCC 23365] gi|163844169|ref|YP_001628574.1| hypothetical protein BSUIS_A1993 [Brucella suis ATCC 23445] gi|225626522|ref|ZP_03784561.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|225853581|ref|YP_002733814.1| hypothetical protein BMEA_A2215 [Brucella melitensis ATCC 23457] gi|254690287|ref|ZP_05153541.1| Diacyglycerol kinase [Brucella abortus bv. 6 str. 870] gi|254694775|ref|ZP_05156603.1| Diacyglycerol kinase [Brucella abortus bv. 3 str. Tulya] gi|254696403|ref|ZP_05158231.1| Diacyglycerol kinase [Brucella abortus bv. 2 str. 86/8/59] gi|254700785|ref|ZP_05162613.1| Diacyglycerol kinase [Brucella suis bv. 5 str. 513] gi|254705154|ref|ZP_05166982.1| Diacyglycerol kinase [Brucella suis bv. 3 str. 686] gi|254707329|ref|ZP_05169157.1| Diacyglycerol kinase [Brucella pinnipedialis M163/99/10] gi|254709130|ref|ZP_05170941.1| Diacyglycerol kinase [Brucella pinnipedialis B2/94] gi|254713445|ref|ZP_05175256.1| Diacyglycerol kinase [Brucella ceti M644/93/1] gi|254716199|ref|ZP_05178010.1| Diacyglycerol kinase [Brucella ceti M13/05/1] gi|254731316|ref|ZP_05189894.1| Diacyglycerol kinase [Brucella abortus bv. 4 str. 292] gi|256030655|ref|ZP_05444269.1| Diacyglycerol kinase [Brucella pinnipedialis M292/94/1] gi|256045759|ref|ZP_05448637.1| Diacyglycerol kinase [Brucella melitensis bv. 1 str. Rev.1] gi|256060116|ref|ZP_05450298.1| Diacyglycerol kinase [Brucella neotomae 5K33] gi|256112478|ref|ZP_05453399.1| Diacyglycerol kinase [Brucella melitensis bv. 3 str. Ether] gi|256158657|ref|ZP_05456540.1| Diacyglycerol kinase [Brucella ceti M490/95/1] gi|256254061|ref|ZP_05459597.1| Diacyglycerol kinase [Brucella ceti B1/94] gi|256258540|ref|ZP_05464076.1| Diacyglycerol kinase [Brucella abortus bv. 9 str. C68] gi|260169559|ref|ZP_05756370.1| Diacyglycerol kinase [Brucella sp. F5/99] gi|260755827|ref|ZP_05868175.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260759050|ref|ZP_05871398.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260760775|ref|ZP_05873118.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884852|ref|ZP_05896466.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261215102|ref|ZP_05929383.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261217973|ref|ZP_05932254.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221202|ref|ZP_05935483.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314811|ref|ZP_05954008.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261316630|ref|ZP_05955827.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321177|ref|ZP_05960374.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261324093|ref|ZP_05963290.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261751294|ref|ZP_05995003.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755859|ref|ZP_05999568.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987702|ref|ZP_06100259.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265992176|ref|ZP_06104733.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993914|ref|ZP_06106471.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265997163|ref|ZP_06109720.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294851380|ref|ZP_06792053.1| metalloprotease [Brucella sp. NVSL 07-0026] gi|54040443|sp|P67133|RRMF_BRUSU RecName: Full=Probable rRNA maturation factor gi|54042632|sp|P67132|RRMF_BRUME RecName: Full=Probable rRNA maturation factor gi|145572768|sp|Q57AA9|RRMF_BRUAB RecName: Full=Probable rRNA maturation factor gi|145572769|sp|Q2YQS6|RRMF_BRUA2 RecName: Full=Probable rRNA maturation factor gi|189039424|sp|B0CK02|RRMF_BRUSI RecName: Full=Probable rRNA maturation factor gi|189039776|sp|A9M9Y5|RRMF_BRUC2 RecName: Full=Probable rRNA maturation factor gi|254801689|sp|C0RG38|RRMF_BRUMB RecName: Full=Probable rRNA maturation factor gi|17984025|gb|AAL53155.1| diacyglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|161336875|gb|ABX63180.1| conserved hypothetical protein [Brucella canis ATCC 23365] gi|163674892|gb|ABY39003.1| conserved hypothetical protein [Brucella suis ATCC 23445] gi|225618179|gb|EEH15222.1| conserved hypothetical protein [Brucella ceti str. Cudo] gi|225641946|gb|ACO01860.1| conserved hypothetical protein [Brucella melitensis ATCC 23457] gi|260669368|gb|EEX56308.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260671207|gb|EEX58028.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675935|gb|EEX62756.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260874380|gb|EEX81449.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916709|gb|EEX83570.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260919786|gb|EEX86439.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260923062|gb|EEX89630.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261293867|gb|EEX97363.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261295853|gb|EEX99349.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261300073|gb|EEY03570.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303837|gb|EEY07334.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261741047|gb|EEY28973.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745612|gb|EEY33538.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262551631|gb|EEZ07621.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|262764895|gb|EEZ10816.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263003242|gb|EEZ15535.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|264659899|gb|EEZ30160.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294819969|gb|EFG36968.1| metalloprotease [Brucella sp. NVSL 07-0026] gi|326410154|gb|ADZ67219.1| diacylglycerol kinase [Brucella melitensis M28] gi|326539872|gb|ADZ88087.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 168 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 80/160 (50%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W DE L +L A A +NL +K ELS+VFTD I+ L Sbjct: 6 IHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLL 60 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL+ Sbjct: 61 NGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLV 120 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 121 VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 160 >gi|62290993|ref|YP_222786.1| hypothetical protein BruAb1_2129 [Brucella abortus bv. 1 str. 9-941] gi|260546256|ref|ZP_05821996.1| diacylglycerol kinase [Brucella abortus NCTC 8038] gi|260563055|ref|ZP_05833541.1| diacylglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|260567377|ref|ZP_05837847.1| diacylglycerol kinase [Brucella suis bv. 4 str. 40] gi|261759087|ref|ZP_06002796.1| diacylglycerol kinase [Brucella sp. F5/99] gi|265999239|ref|ZP_05465467.2| diacylglycerol kinase [Brucella melitensis bv. 2 str. 63/9] gi|297247379|ref|ZP_06931097.1| diacylglycerol kinase [Brucella abortus bv. 5 str. B3196] gi|62197125|gb|AAX75425.1| conserved hypothetical protein TIGR00043 [Brucella abortus bv. 1 str. 9-941] gi|260096363|gb|EEW80239.1| diacylglycerol kinase [Brucella abortus NCTC 8038] gi|260153071|gb|EEW88163.1| diacylglycerol kinase [Brucella melitensis bv. 1 str. 16M] gi|260156895|gb|EEW91975.1| diacylglycerol kinase [Brucella suis bv. 4 str. 40] gi|261739071|gb|EEY27067.1| diacylglycerol kinase [Brucella sp. F5/99] gi|263092809|gb|EEZ16984.1| diacylglycerol kinase [Brucella melitensis bv. 2 str. 63/9] gi|297174548|gb|EFH33895.1| diacylglycerol kinase [Brucella abortus bv. 5 str. B3196] Length = 171 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 80/160 (50%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W DE L +L A A +NL +K ELS+VFTD I+ L Sbjct: 9 IHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLL 63 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL+ Sbjct: 64 NGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLV 123 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 124 VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 163 >gi|254718193|ref|ZP_05180004.1| Diacyglycerol kinase [Brucella sp. 83/13] gi|265983151|ref|ZP_06095886.1| conserved hypothetical protein [Brucella sp. 83/13] gi|264661743|gb|EEZ32004.1| conserved hypothetical protein [Brucella sp. 83/13] Length = 168 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 79/160 (49%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W DE L +L A A +NL +K ELS+VFTD I+ L Sbjct: 6 IHIDIMIEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLL 60 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + +LGDIV+A E +E EA GK ENHL HL+ Sbjct: 61 NGEWRGKDKPTNVLSFPAFPVKAGSQPGPLLGDIVIARETVEREAKEEGKPIENHLSHLV 120 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D++A VME ER IL L I DPY V Sbjct: 121 VHGFLHLLGYDHETDEEAEVMEAREREILHALAIPDPYAV 160 >gi|306842736|ref|ZP_07475378.1| conserved hypothetical protein [Brucella sp. BO2] gi|306287080|gb|EFM58585.1| conserved hypothetical protein [Brucella sp. BO2] Length = 158 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 93/154 (60%), Gaps = 5/154 (3%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E W DE L +L A A +NL +K ELS+VFTD I+ LN E+RG Sbjct: 2 IEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQVLNGEWRG 56 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL++HGFLH Sbjct: 57 KDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLH 116 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LLGYDH D++A VME ER IL L I DPY V Sbjct: 117 LLGYDHETDEEAEVMEAREREILHALAIPDPYAV 150 >gi|239833204|ref|ZP_04681533.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] gi|239825471|gb|EEQ97039.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] Length = 162 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 81/160 (50%), Positives = 96/160 (60%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E W +E L L A SNL +K ELS+VFTD I+TL Sbjct: 6 IHIDIMIEAGNWQEENALEGLVRKSVEAAWSNL-----GLKSAASELSVVFTDDASIQTL 60 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFP + MLGDI++A E +E EA GK ENHLVHL+ Sbjct: 61 NAEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIIIARETVEREALEEGKPLENHLVHLV 120 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHLLGYDH D +A VMEG ER IL L I DPY V Sbjct: 121 VHGFLHLLGYDHETDAEAEVMEGREREILHALAIPDPYAV 160 >gi|23503004|ref|NP_699131.1| hypothetical protein BR2156 [Brucella suis 1330] gi|82700902|ref|YP_415476.1| hypothetical protein BAB1_2156 [Brucella melitensis biovar Abortus 2308] gi|148560239|ref|YP_001259950.1| hypothetical protein BOV_2068 [Brucella ovis ATCC 25840] gi|256370551|ref|YP_003108062.1| metal-dependent hydrolase [Brucella microti CCM 4915] gi|23349044|gb|AAN31046.1| conserved hypothetical protein TIGR00043 [Brucella suis 1330] gi|82617003|emb|CAJ12112.1| Protein of unknown function UPF0054 [Brucella melitensis biovar Abortus 2308] gi|148371496|gb|ABQ61475.1| conserved hypothetical protein TIGR00043 [Brucella ovis ATCC 25840] gi|256000714|gb|ACU49113.1| metal-dependent hydrolase [Brucella microti CCM 4915] Length = 158 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 93/154 (60%), Gaps = 5/154 (3%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E W DE L +L A A +NL +K ELS+VFTD I+ LN E+RG Sbjct: 2 IEAGNWPDEASLESLVSKSVAAAWNNL-----GLKSATSELSVVFTDDASIQLLNGEWRG 56 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 DKPTNVLSFP + MLGDIV+A E +E EA GK ENHL HL++HGFLH Sbjct: 57 KDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLH 116 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LLGYDH D++A VME ER IL L I DPY V Sbjct: 117 LLGYDHETDEEAEVMEAREREILHALAIPDPYAV 150 >gi|157376605|ref|YP_001475205.1| putative metalloprotease [Shewanella sediminis HAW-EB3] gi|189040151|sp|A8FZ04|RRMF_SHESH RecName: Full=Probable rRNA maturation factor gi|157318979|gb|ABV38077.1| protein of unknown function UPF0054 [Shewanella sediminis HAW-EB3] Length = 158 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 14/160 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A+EN+ + + K ++ EL++ D + Sbjct: 11 DLDLQLAIENSQLPSKQNFELWVRTALPKTMAE------------AELTIRIVDEAESQE 58 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + +LGD+++ ++E+EA K + H H+ Sbjct: 59 LNSTYRGKDKPTNVLSFP--FEAPPEIEIPLLGDLIICAPVVELEALQQNKPLQAHWAHM 116 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HG LHLLGYDH++D +A ME LE ++E LG N+PY+ Sbjct: 117 VVHGCLHLLGYDHINDAEAEEMESLETQLVESLGFNNPYK 156 >gi|293397292|ref|ZP_06641564.1| metal-dependent hydrolase [Serratia odorifera DSM 4582] gi|291420210|gb|EFE93467.1| metal-dependent hydrolase [Serratia odorifera DSM 4582] Length = 157 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENA-LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA E+A DE + E V + + E+++ D Sbjct: 1 MSQVILDLQIACEHANGLPDEAAFQRWLEGVLPQ------------FQAEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E Sbjct: 49 AESHQLNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAVEQGKALEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGLGYQDPYLAE 153 >gi|253990621|ref|YP_003041977.1| metalloprotease [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782071|emb|CAQ85235.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 155 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA EN+ E E +F + + ++ + + E+++ D Sbjct: 1 MSSVILDLQIACENSQNLPE-------ETLFQRWLDGVLPQ----FQPESEVTIRIVDET 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLSFP--FEAPPEVDLPLLGDLIICRQVVEKEAEEQQKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+ D +A ME LE I++ LG +DPY + Sbjct: 108 WAHMVVHGCLHLLGYDHIADDEAEEMESLETEIMQKLGYSDPYLAE 153 >gi|152985334|ref|YP_001346512.1| putative metalloprotease [Pseudomonas aeruginosa PA7] gi|150960492|gb|ABR82517.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 168 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 63/171 (36%), Positives = 85/171 (49%), Gaps = 15/171 (8%) Query: 2 SVKKVNLP-RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 + + V +P LDLQ+A + A E R CE+ + + EL++ Sbjct: 3 AARAVTMPLELDLQVASDAADLPSEAQFRAWCELALRQRAES-------------ELTIR 49 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D LN YR D TNVLSFP + +LGD+V+ ++ EA K Sbjct: 50 LVDEAEGLELNSTYRHKDYATNVLSFPADVPE-EFLDIPLLGDLVICAPVVAREAREQHK 108 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 + H HL+IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 109 PLQAHWAHLVIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 159 >gi|300722330|ref|YP_003711615.1| putative metal-dependent hydrolase [Xenorhabdus nematophila ATCC 19061] gi|297628832|emb|CBJ89410.1| putative metal-dependent hydrolase [Xenorhabdus nematophila ATCC 19061] Length = 155 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA EN E E +F + + ++ + + E+++ D Sbjct: 1 MSSVILDLQIACENPKGLPE-------EALFQRWLEGVLPQ----FQAESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVL+FP F S +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKDKPTNVLTFP--FESPPEIELPLLGDLIICRQVVEKEAEEQQKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+D+ +A ME LE IL+ +G +DPY+++ Sbjct: 108 WAHMVVHGSLHLLGYDHIDNDEAEEMEFLETEILKKMGYSDPYQIE 153 >gi|290476184|ref|YP_003469084.1| putative metal-dependent hydrolase [Xenorhabdus bovienii SS-2004] gi|289175517|emb|CBJ82320.1| putative metal-dependent hydrolase [Xenorhabdus bovienii SS-2004] Length = 155 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 87/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 +N LDLQIA EN DE + E + + + E+++ D Sbjct: 1 MNSVILDLQIACENPEGLPDEALFQRWLESILPQ------------FQAESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAEEQQKTVEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H++IHG LHLLGYDH++D +A ME LE IL+ +G DPY + Sbjct: 107 HWAHMVIHGSLHLLGYDHIEDDEAEEMESLETEILQKMGYADPYLAE 153 >gi|294142166|ref|YP_003558144.1| hypothetical protein SVI_3395 [Shewanella violacea DSS12] gi|293328635|dbj|BAJ03366.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 158 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 87/170 (51%), Gaps = 15/170 (8%) Query: 1 MSVKKVNLP-RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 MS+ NL LDLQIA++N ++ EL++ Sbjct: 1 MSLNHKNLELELDLQIAIDNKSLPSREDFELWVHSALRDTMTQ------------AELTI 48 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 D +TLN YRG DKPTNVLSFP F + +LGD+V+ ++E EA Sbjct: 49 RIVDKAESQTLNSSYRGKDKPTNVLSFP--FEAPPEIDIPLLGDLVICAPVVEFEAKQQN 106 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K + H H+++HG LHLLGYDH+ D +A ME LE ++E LG N+PY+ Sbjct: 107 KSLKAHWAHMVVHGCLHLLGYDHIQDAEAEEMESLETQLIEKLGFNNPYK 156 >gi|114561894|ref|YP_749407.1| putative metalloprotease [Shewanella frigidimarina NCIMB 400] gi|122300720|sp|Q087J6|RRMF_SHEFN RecName: Full=Probable rRNA maturation factor gi|114333187|gb|ABI70569.1| protein of unknown function UPF0054 [Shewanella frigidimarina NCIMB 400] Length = 156 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 91/169 (53%), Gaps = 15/169 (8%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 MS + ++L LDLQIAV+N + T + + +VEL++ Sbjct: 1 MSQQGISL-DLDLQIAVDNPRLPTQAEFETWVRAAIGQT------------KPVVELTIR 47 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D + LN YRG DKPTNVLSFP F + +LGD+V+ ++E EA K Sbjct: 48 IVDIAESQQLNSTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLVICAPVVEQEAIEQNK 105 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H H++IHG LHLLGYDH+ D++A ME LE ++E LG ++PY+ Sbjct: 106 PLIAHWAHMVIHGSLHLLGYDHIIDEEADEMESLETQLVEGLGFDNPYK 154 >gi|303250397|ref|ZP_07336595.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252249|ref|ZP_07534146.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650723|gb|EFL80881.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860171|gb|EFM92187.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 163 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ + E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLAQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPY 155 >gi|320539650|ref|ZP_08039314.1| putative conserved protein [Serratia symbiotica str. Tucson] gi|320030262|gb|EFW12277.1| putative conserved protein [Serratia symbiotica str. Tucson] Length = 157 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA E++ DE + E V + E+++ D Sbjct: 1 MSQVILDLQIACEDSNNLPDETAFQRWLEAVL------------LQFQEEAEVTVRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G + +LGD+++ +++E EA GK E Sbjct: 49 AESNELNLTYRGKDKPTNVLSFP--FEAPPGIALPLLGDLIICRQVVEQEAAEQGKTSEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDAAEEMESLETEIMHGLGYPDPYLAE 153 >gi|261341272|ref|ZP_05969130.1| putative metalloprotease [Enterobacter cancerogenus ATCC 35316] gi|288316577|gb|EFC55515.1| putative metalloprotease [Enterobacter cancerogenus ATCC 35316] Length = 155 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ DE +T + V + + E+++ D Sbjct: 1 MSQVILDLQLACEDNSGMPDEAQFQTWLDAVIPQ------------FQEESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K + Sbjct: 49 AESHELNLTYRGKDKPTNVLSFP--FEAPPGMEMPLLGDLIICRQVVEQEAKEQQKPLDA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLALGYEDPYIAE 153 >gi|163752488|ref|ZP_02159677.1| hypothetical protein KT99_21054 [Shewanella benthica KT99] gi|161327632|gb|EDP98827.1| hypothetical protein KT99_21054 [Shewanella benthica KT99] Length = 158 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 15/170 (8%) Query: 1 MSVKKVNLP-RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 MS+ NL LDLQ+A +N + + + N EL++ Sbjct: 1 MSLNHNNLELDLDLQVATDNERLPSQEDFELWVRIALRDTM------------NQAELTI 48 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 D +TLN YRG DKPTNVLSFP F + +LGD+++ ++E EA Sbjct: 49 RIVDEAESQTLNSSYRGKDKPTNVLSFP--FEAPPEIDIPLLGDLIICAPVVEFEAKQQN 106 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K ++H H+++HG LHLLGYDH+ D +A ME LE ++E LG N+PY+ Sbjct: 107 KSLQSHWAHMVVHGCLHLLGYDHIQDAEAEEMESLETQLIESLGFNNPYK 156 >gi|304395672|ref|ZP_07377555.1| protein of unknown function UPF0054 [Pantoea sp. aB] gi|304356966|gb|EFM21330.1| protein of unknown function UPF0054 [Pantoea sp. aB] Length = 157 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 63/163 (38%), Positives = 91/163 (55%), Gaps = 13/163 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN + E +F + +S ++ + E+++ D Sbjct: 1 MSEVILDLQVACENTANLPD-------ESLFHRWLSAAVTP----FQPESEVTVRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAAEQGKSVEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+++HG LHLLGYDH++D +A MEGLE I+ LG DPY Sbjct: 108 WAHMVVHGTLHLLGYDHIEDDEADEMEGLETEIMLALGYPDPY 150 >gi|226331002|ref|ZP_03806520.1| hypothetical protein PROPEN_04932 [Proteus penneri ATCC 35198] gi|225201797|gb|EEG84151.1| hypothetical protein PROPEN_04932 [Proteus penneri ATCC 35198] Length = 155 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN E T E V + + + E+++ D Sbjct: 1 MSEVILDLQVASENTQGLPTEAQFMTWLEAVLPQ------------FQPVSEVTIRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E Sbjct: 49 AESHELNLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEKEATEQSKTVEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H++IHG LHLLGYDH++D +A MEGLE IL++LG DPY ++ Sbjct: 107 HWAHMVIHGCLHLLGYDHIEDDEAEEMEGLETEILQNLGYADPYLIE 153 >gi|167550793|ref|ZP_02344549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168465846|ref|ZP_02699728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631609|gb|EDX50129.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205324293|gb|EDZ12132.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 157 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 +N LDLQ+A EN A DE + + V + + E+++ D Sbjct: 1 MNQVILDLQLACENHAGLPDEAQFQRWLDGVIPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQSKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|308050554|ref|YP_003914120.1| hypothetical protein Fbal_2844 [Ferrimonas balearica DSM 9799] gi|307632744|gb|ADN77046.1| protein of unknown function UPF0054 [Ferrimonas balearica DSM 9799] Length = 148 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 87/160 (54%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE + L + + A EL++ TD + Sbjct: 2 ELDLQLAVEADNLPSQAQLESWAALALA-------------DRPDAELTIRITDEAESQQ 48 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+V+ ++ EA K +H H+ Sbjct: 49 LNRDYRGKDKPTNVLSFP--FEAPPGIELPLLGDLVICAAVVAREAVEQEKAPMDHWAHM 106 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +IHG LHL+GYDH+DD+DA ME LER +L LGI DPY+ Sbjct: 107 VIHGCLHLIGYDHIDDEDAEEMESLERQLLAQLGIADPYQ 146 >gi|260461991|ref|ZP_05810236.1| protein of unknown function UPF0054 [Mesorhizobium opportunistum WSM2075] gi|259032238|gb|EEW33504.1| protein of unknown function UPF0054 [Mesorhizobium opportunistum WSM2075] Length = 166 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 92/159 (57%), Gaps = 6/159 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I++E W E L L + A A + + G ELS+VF+D I TL Sbjct: 14 VEIDISIEAGDWPAEASLARLVDRAVAVAFAETGAAGQ------SELSIVFSDDAHIRTL 67 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++RG DKPTNVLSFP DG MLGDIVLA E + EA + K ENH+ HL+ Sbjct: 68 NADWRGKDKPTNVLSFPAFPHVKDGPLPPMLGDIVLAAETVAREAALEDKPLENHITHLV 127 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 IHG LHL+GYDH D +A ME +ER+ L L I DPY Sbjct: 128 IHGLLHLMGYDHETDTEAEAMEAVERAALARLAIPDPYA 166 >gi|218508193|ref|ZP_03506071.1| hypothetical protein RetlB5_11662 [Rhizobium etli Brasil 5] Length = 156 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 23 GDEIHLRTLCEVVF-AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 +E L C V A AV S+ E+SLVFTD I+ +N E+RG DK T Sbjct: 1 PEEETLLAFCGRVLGAAAVYLRDSEKQPFPTMPPEVSLVFTDDASIQDINAEWRGKDKAT 60 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 NVLSFP MLGDI++A E +E EA+ L K F++HL HL++HGFLHLLGYD Sbjct: 61 NVLSFPAFPVQPGKMPGPMLGDIIIARETVEREAHELEKSFDDHLTHLLVHGFLHLLGYD 120 Query: 142 HVDDKDACVMEGLERSILEDLGINDPYE 169 H++ +A +MEGLE IL LG++DPYE Sbjct: 121 HMNSAEAEIMEGLETRILAQLGLSDPYE 148 >gi|37525277|ref|NP_928621.1| putative metalloprotease [Photorhabdus luminescens subsp. laumondii TTO1] gi|46577360|sp|Q7N748|RRMF_PHOLL RecName: Full=Probable rRNA maturation factor gi|36784704|emb|CAE13604.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 155 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E++ + L + + ++ E+++ D Sbjct: 1 MSSVILDLQIACEHSQGLPKETL-----------FQHWLDGVLPQFQSESEVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG +KPTNVLSFP F + +LGD+++ +++E EA K E H Sbjct: 50 ESHDLNLTYRGKNKPTNVLSFP--FEAPPEIDLPLLGDLIICRQVVEKEAEEQQKTIEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ LG DPY + Sbjct: 108 WAHMVVHGCLHLLGYDHIEDDEAEEMESLETEIMQKLGYADPYLAE 153 >gi|311280445|ref|YP_003942676.1| hypothetical protein Entcl_3146 [Enterobacter cloacae SCF1] gi|308749640|gb|ADO49392.1| protein of unknown function UPF0054 [Enterobacter cloacae SCF1] Length = 155 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 63/166 (37%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN E L E F + + +I + + E+++ D Sbjct: 1 MSAVILDLQLACEN-----EAGLPQ--EAQFQRWLDAVIPQ----FQEESEVTVRLVDDA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DK TNVLSFP F + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKSTNVLSFP--FEAPPGMEMPLLGDLIICRQVVEREAEEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG +DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYDDPYIAE 153 >gi|56414203|ref|YP_151278.1| metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363127|ref|YP_002142764.1| metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|62901210|sp|Q5PLS8|RRMF_SALPA RecName: Full=Probable rRNA maturation factor YbeY gi|238689934|sp|B5BCD3|RRMF_SALPK RecName: Full=Probable rRNA maturation factor YbeY gi|56128460|gb|AAV77966.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094604|emb|CAR60125.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 157 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN A DE + + V + + E+++ D Sbjct: 1 MSQVILDLQLACENHAGLPDEAQFQRWLDGVIPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQSKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|296103384|ref|YP_003613530.1| putative metalloprotease [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057843|gb|ADF62581.1| putative metalloprotease [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295096598|emb|CBK85688.1| conserved hypothetical protein TIGR00043 [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 155 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E + + V + + E+++ D Sbjct: 1 MSQVILDLQLACEDNSGMPEEAQFQKWLDAVIPQ------------FQEESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHELNLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAKEQQKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYEDPYIAE 153 >gi|16759620|ref|NP_455237.1| metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142607|ref|NP_805949.1| metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179266|ref|YP_215683.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615113|ref|YP_001589078.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168231684|ref|ZP_02656742.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236656|ref|ZP_02661714.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240518|ref|ZP_02665450.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264398|ref|ZP_02686371.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820206|ref|ZP_02832206.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443004|ref|YP_002039912.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448551|ref|YP_002044703.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470785|ref|ZP_03076769.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734762|ref|YP_002113779.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251252|ref|YP_002145645.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262278|ref|ZP_03162352.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390340|ref|ZP_03216951.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930535|ref|ZP_03221465.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213425076|ref|ZP_03357826.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213608001|ref|ZP_03368827.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647867|ref|ZP_03377920.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224582503|ref|YP_002636301.1| metalloprotease [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911618|ref|ZP_04655455.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825601|ref|ZP_06544787.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|26006915|sp|Q8Z8G6|RRMF_SALTI RecName: Full=Probable rRNA maturation factor YbeY gi|75484424|sp|Q57RQ9|RRMF_SALCH RecName: Full=Probable rRNA maturation factor YbeY gi|189041075|sp|A9MUI2|RRMF_SALPB RecName: Full=Probable rRNA maturation factor YbeY gi|226704002|sp|B5EZB0|RRMF_SALA4 RecName: Full=Probable rRNA maturation factor YbeY gi|238690245|sp|B4TB72|RRMF_SALHS RecName: Full=Probable rRNA maturation factor YbeY gi|238693560|sp|B4SYM8|RRMF_SALNS RecName: Full=Probable rRNA maturation factor YbeY gi|238693645|sp|B4TPY8|RRMF_SALSV RecName: Full=Probable rRNA maturation factor YbeY gi|254807367|sp|C0PW97|RRMF_SALPC RecName: Full=Probable rRNA maturation factor YbeY gi|25331411|pir||AI0583 conserved hypothetical protein STY0714 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501912|emb|CAD05139.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138238|gb|AAO69809.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126899|gb|AAX64602.1| putative metal-dependent hydrolase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364477|gb|ABX68245.1| hypothetical protein SPAB_02880 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401667|gb|ACF61889.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406855|gb|ACF67074.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457149|gb|EDX45988.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710264|gb|ACF89485.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197214955|gb|ACH52352.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240533|gb|EDY23153.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290423|gb|EDY29779.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602785|gb|EDZ01331.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320469|gb|EDZ05672.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205334140|gb|EDZ20904.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340341|gb|EDZ27105.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343173|gb|EDZ29937.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347119|gb|EDZ33750.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224467030|gb|ACN44860.1| hypothetical protein SPC_0685 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320084941|emb|CBY94730.1| putative metalloprotease ybeY [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613206|gb|EFY10149.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621274|gb|EFY18131.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623694|gb|EFY20532.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628966|gb|EFY25745.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631688|gb|EFY28442.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637576|gb|EFY34278.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641916|gb|EFY38546.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646760|gb|EFY43266.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651461|gb|EFY47841.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653088|gb|EFY49422.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658809|gb|EFY55064.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664922|gb|EFY61115.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668924|gb|EFY65076.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670570|gb|EFY66703.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675311|gb|EFY71387.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682218|gb|EFY78243.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684953|gb|EFY80950.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713732|gb|EFZ05303.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193989|gb|EFZ79191.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197919|gb|EFZ83041.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202034|gb|EFZ87094.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207167|gb|EFZ92120.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210926|gb|EFZ95789.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214306|gb|EFZ99057.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219289|gb|EGA03780.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225500|gb|EGA09730.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231059|gb|EGA15175.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234109|gb|EGA18198.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238196|gb|EGA22254.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242570|gb|EGA26594.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248453|gb|EGA32387.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251332|gb|EGA35204.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323262139|gb|EGA45701.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264849|gb|EGA48350.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272314|gb|EGA55721.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 157 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN A DE + + V + + E+++ D Sbjct: 1 MSQVILDLQLACENHAGLPDEAQFQRWLDGVIPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQSKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|32033745|ref|ZP_00134040.1| COG0319: Predicted metal-dependent hydrolase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208174|ref|YP_001053399.1| putative metalloprotease [Actinobacillus pleuropneumoniae L20] gi|165976112|ref|YP_001651705.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150005|ref|YP_001968530.1| hypothetical protein APP7_0736 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263336|ref|ZP_07544954.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|171855089|sp|A3N058|RRMF_ACTP2 RecName: Full=Probable rRNA maturation factor gi|238692332|sp|B3GXC9|RRMF_ACTP7 RecName: Full=Probable rRNA maturation factor gi|126096966|gb|ABN73794.1| hypothetical protein APL_0694 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876213|gb|ABY69261.1| hypothetical protein APJL_0692 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915136|gb|ACE61388.1| hypothetical protein APP7_0736 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871398|gb|EFN03124.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 163 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ + E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLAQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESYELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPY 155 >gi|270263721|ref|ZP_06191990.1| putative metalloprotease YbeY [Serratia odorifera 4Rx13] gi|270042605|gb|EFA15700.1| putative metalloprotease YbeY [Serratia odorifera 4Rx13] Length = 157 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ DE + E V + + E+++ D Sbjct: 1 MSQVILDLQIACADSNGLPDEATFQRWLEGVLPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESNELNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAVEQDKALEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMHGLGYPDPYLAE 153 >gi|328545926|ref|YP_004306035.1| metalloprotease [polymorphum gilvum SL003B-26A1] gi|326415666|gb|ADZ72729.1| Putative metalloprotease [Polymorphum gilvum SL003B-26A1] Length = 178 Score = 189 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 72/164 (43%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 L + +AVE W D L L A A N + ELSLVF D I Sbjct: 13 PEDLQIDLAVEAGDWPDGARLEDLTRAAVAAAFRNAPLRTL----PGSELSLVFLDDDGI 68 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +R DKPTNVLSF + + G MLGDIVL+ + + EA G F +H Sbjct: 69 RALNRSWRNKDKPTNVLSF-SGGDAVGGRYGPMLGDIVLSSDTLAREAKEQGISFCDHFS 127 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL++HG LHL GYDH + +A +MEGLER IL DLGI DPY D Sbjct: 128 HLVVHGLLHLFGYDHQIEAEAEIMEGLERRILADLGIADPYAGD 171 >gi|262172030|ref|ZP_06039708.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451] gi|261893106|gb|EEY39092.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451] Length = 154 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE DE L T E FA+ ++ I+ + E+++ D Sbjct: 4 ELDLQLAVE-----DENGLPT--EADFAQWLTRTITP----FQPQAEVTIRIVDEEESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETKIMQEMGFTDPYLAE 152 >gi|307249902|ref|ZP_07531876.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858091|gb|EFM90173.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 163 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ + E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLEQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWTHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPY 155 >gi|261822379|ref|YP_003260485.1| metalloprotease [Pectobacterium wasabiae WPP163] gi|261606392|gb|ACX88878.1| protein of unknown function UPF0054 [Pectobacterium wasabiae WPP163] Length = 159 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E A E E F + + ++ + + + E+++ D Sbjct: 1 MSQVILDLQIASEQAQGLPE-------EKDFQRWLEGVLPQ----FQEVSEVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H Sbjct: 50 ESRDLNNTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEREAAEQEKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYTDPYLAE 153 >gi|258621977|ref|ZP_05717006.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258627066|ref|ZP_05721862.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580584|gb|EEW05537.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258585730|gb|EEW10450.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 154 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L T E FA+ ++ I+ + E+++ D Sbjct: 4 ELDLQLAVEN-----ENGLPT--EADFAQWLTRTITP----FQPQAEVTIRIVDEKESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|110834797|ref|YP_693656.1| hypothetical protein ABO_1936 [Alcanivorax borkumensis SK2] gi|123345401|sp|Q0VN64|RRMF_ALCBS RecName: Full=Probable rRNA maturation factor gi|110647908|emb|CAL17384.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 175 Score = 189 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 87/168 (51%), Gaps = 13/168 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + + P +D+Q A + DE HL CE V A++ G +++L Sbjct: 1 MNGIPTPTVDIQWASDAPDAPDETHL---CEWVRHAAIAAGGVVG--------DITLRIV 49 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D I TLN +YR D PTNVLSFP +G ++GDI++ ++ EAN K Sbjct: 50 DEEEIRTLNRDYRDKDAPTNVLSFPFEMPEGLPEGAMDPLVGDIIICAAVVRREANEQHK 109 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H++ HG LHLLGYDH+DD DA VME LE L +LG DPY Sbjct: 110 PLVAHWAHMVTHGVLHLLGYDHIDDDDAIVMETLEIRALGELGFPDPY 157 >gi|157369460|ref|YP_001477449.1| hypothetical protein Spro_1217 [Serratia proteamaculans 568] gi|166977828|sp|A8GB31|RRMF_SERP5 RecName: Full=Probable rRNA maturation factor gi|157321224|gb|ABV40321.1| protein of unknown function UPF0054 [Serratia proteamaculans 568] Length = 157 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A +N+ DE + E V + + E+++ D Sbjct: 1 MSQVILDLQLACADNSGLPDEATFQRWLEGVLPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG+DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESNELNLTYRGMDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEREAAEQDKALEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMHGLGYPDPYLAE 153 >gi|322514461|ref|ZP_08067501.1| metal-dependent hydrolase [Actinobacillus ureae ATCC 25976] gi|322119624|gb|EFX91692.1| metal-dependent hydrolase [Actinobacillus ureae ATCC 25976] Length = 163 Score = 189 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 66/164 (40%), Positives = 91/164 (55%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ K E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLEQ--FTQWVQRALAHKAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F +G +LGD+++ ++E EA E+ Sbjct: 54 AESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRHVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPY 155 >gi|291616692|ref|YP_003519434.1| YbeY [Pantoea ananatis LMG 20103] gi|291151722|gb|ADD76306.1| YbeY [Pantoea ananatis LMG 20103] gi|327393117|dbj|BAK10539.1| hypothetical UPF0054 protein YbeY [Pantoea ananatis AJ13355] Length = 157 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 63/163 (38%), Positives = 90/163 (55%), Gaps = 13/163 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E +L T E F + + ++ + E+++ D Sbjct: 1 MSDVILDLQLACEQTD-----NLPT--ESQFQRWLEAAVTP----FQPESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAQEQGKTPEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H++IHG LHLLGYDH++D +A MEG+E I+ LG DPY Sbjct: 108 WAHMVIHGTLHLLGYDHIEDSEAEEMEGIETEIMLALGYPDPY 150 >gi|308186035|ref|YP_003930166.1| metalloprotease [Pantoea vagans C9-1] gi|308056545|gb|ADO08717.1| Putative metalloprotease [Pantoea vagans C9-1] Length = 157 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A +N A DE +S + E+++ D Sbjct: 1 MSEVILDLQVACDNTADLPDEGQF------------HRWLSAAVTPFQPESEVTVRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E Sbjct: 49 AESHELNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAAEQGKSVEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH++D +A MEGLE I+ LG DPY Sbjct: 107 HWAHMVVHGTLHLLGYDHIEDDEADEMEGLETEIMLALGYPDPY 150 >gi|312882699|ref|ZP_07742436.1| putative metalloprotease [Vibrio caribbenthicus ATCC BAA-2122] gi|309369660|gb|EFP97175.1| putative metalloprotease [Vibrio caribbenthicus ATCC BAA-2122] Length = 154 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIAVEN L T +++ + + E+++ D + L Sbjct: 5 LDLQIAVENDK-----DLPTYEDILL------WLDSTLAKFKPQAEVTVRVVDEPESQEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K +H H++ Sbjct: 54 NHDYRGKDKPTNVLSFP--FEAPPGIDIDLLGDLVICKQVVEREAIEQNKPLISHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D++A ME LE I++ +G +DPY + Sbjct: 112 VHGCLHLLGYDHIEDQEAEEMESLETEIMKSMGYSDPYITE 152 >gi|212712960|ref|ZP_03321088.1| hypothetical protein PROVALCAL_04058 [Providencia alcalifaciens DSM 30120] gi|212684438|gb|EEB43966.1| hypothetical protein PROVALCAL_04058 [Providencia alcalifaciens DSM 30120] Length = 155 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 87/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA EN A E + V K + E+++ D Sbjct: 1 MSDVILDLQIASENTAGLPTEAMFQRWVNAVLPK------------FQAESEVTIRVVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E Sbjct: 49 AESHELNLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAAEQQKSEEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A MEGLE IL ++G DPY + Sbjct: 107 HWAHMVVHGCLHLLGYDHIEDDEAEEMEGLETEILAEMGYADPYLAE 153 >gi|307245551|ref|ZP_07527638.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254505|ref|ZP_07536341.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258964|ref|ZP_07540695.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853610|gb|EFM85828.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862555|gb|EFM94513.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866988|gb|EFM98845.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 163 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 91/164 (55%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ + E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLAQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DK TNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESHELNLTYRGKDKSTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDAEAEEMEGLETEIMQSLGFEDPY 155 >gi|161504168|ref|YP_001571280.1| putative metalloprotease [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189041074|sp|A9MKB9|RRMF_SALAR RecName: Full=Probable rRNA maturation factor YbeY gi|160865515|gb|ABX22138.1| hypothetical protein SARI_02274 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 155 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN + DE + + V + + E+++ D Sbjct: 1 MSQVILDLQLACENHSGLPDEAQFQRWLDGVIPQ------------FQEASEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQDKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|271499715|ref|YP_003332740.1| hypothetical protein Dd586_1151 [Dickeya dadantii Ech586] gi|270343270|gb|ACZ76035.1| protein of unknown function UPF0054 [Dickeya dadantii Ech586] Length = 161 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENA-LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA EN+ E + E V + ++ E+++ D Sbjct: 1 MSQVILDLQIASENSHGLPSEADFQRWLEAVLPQ------------FQDEAEVTIRVVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA GK E Sbjct: 49 EESHHLNLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAVEQGKSEEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|227327388|ref|ZP_03831412.1| putative metalloprotease [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 159 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E A E E F + + ++ + + + E+++ D Sbjct: 1 MSQVILDLQIASEQAQGLPE-------EKDFQRWLEGVLPQ----FQEVSEVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H Sbjct: 50 ESRDLNNTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEREAAEQEKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQGMGYADPYLAE 153 >gi|171473045|sp|A6V0C7|RRMF_PSEA7 RecName: Full=Probable rRNA maturation factor Length = 160 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 80/162 (49%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A + A E R CE+ + + EL++ D Sbjct: 4 ELDLQVASDAADLPSEAQFRAWCELALRQRAES-------------ELTIRLVDEAEGLE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVLSFP + +LGD+V+ ++ EA K + H HL Sbjct: 51 LNSTYRHKDYATNVLSFPADVPE-EFLDIPLLGDLVICAPVVAREAREQHKPLQAHWAHL 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 110 VIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|198244509|ref|YP_002214657.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205351953|ref|YP_002225754.1| metalloprotease [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856133|ref|YP_002242784.1| metalloprotease [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226704003|sp|B5FNB0|RRMF_SALDC RecName: Full=Probable rRNA maturation factor YbeY gi|226704004|sp|B5QWB9|RRMF_SALEP RecName: Full=Probable rRNA maturation factor YbeY gi|226704005|sp|B5R815|RRMF_SALG2 RecName: Full=Probable rRNA maturation factor YbeY gi|197939025|gb|ACH76358.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271734|emb|CAR36568.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707936|emb|CAR32225.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326622412|gb|EGE28757.1| Putative metalloprotease ybeY [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626992|gb|EGE33335.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 157 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN A DE + + V + + E+++ D Sbjct: 1 MSQVILDLQLACENHAGLPDEAQFQRWLDGVIPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 TESHDLNLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQSKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|303252387|ref|ZP_07338553.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247668|ref|ZP_07529709.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648846|gb|EFL79036.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855836|gb|EFM87998.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 163 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ + E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLAQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESYELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDVEAEEMEGLETEIMQSLGFEDPY 155 >gi|50120256|ref|YP_049423.1| putative metalloprotease [Pectobacterium atrosepticum SCRI1043] gi|59799108|sp|Q6D7K8|RRMF_ERWCT RecName: Full=Probable rRNA maturation factor gi|49610782|emb|CAG74227.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 159 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E A E E F + + ++ + + + E+++ D Sbjct: 1 MSQVILDLQIASEQAQGLPE-------EKDFQRWLEGVLPQ----FQEVSEVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H Sbjct: 50 ESRDLNNTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEREAVEQEKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|16764045|ref|NP_459660.1| metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990678|ref|ZP_02571778.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|17865774|sp|O87574|RRMF_SALTY RecName: Full=Probable rRNA maturation factor YbeY gi|16419182|gb|AAL19619.1| putative metal-dependent hydrolase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205330884|gb|EDZ17648.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245940|emb|CBG23742.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992404|gb|ACY87289.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157268|emb|CBW16756.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911700|dbj|BAJ35674.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226248|gb|EFX51299.1| metal-dependent hydrolase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128985|gb|ADX16415.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987612|gb|AEF06595.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 157 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN A DE + + V + + E+++ D Sbjct: 1 MSQVILDLQLACENHAGLPDEAQFQRWLDGVIPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFP--FEAPAGIEMPLLGDLIICRQVVEQEAQEQSKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 153 >gi|197284345|ref|YP_002150217.1| metalloprotease [Proteus mirabilis HI4320] gi|227358511|ref|ZP_03842836.1| metal-dependent hydrolase [Proteus mirabilis ATCC 29906] gi|238693170|sp|B4EV26|RRMF_PROMH RecName: Full=Probable rRNA maturation factor gi|194681832|emb|CAR41113.1| conserved hypothetical protein [Proteus mirabilis HI4320] gi|227161222|gb|EEI46296.1| metal-dependent hydrolase [Proteus mirabilis ATCC 29906] Length = 155 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN E T E V + + I E+++ D Sbjct: 1 MSEVILDLQVATENTQGLPSEAQFITWLEAVLPQ------------FQPISEVTIRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP F + +LGD+++ +++E EA+ K E Sbjct: 49 AESHELNLTYRGKDRPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEKEADEQNKTVEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H++IHG LHLLGYDH++D +A MEGLE IL+ LG DPY ++ Sbjct: 107 HWAHMVIHGCLHLLGYDHIEDDEAEEMEGLETEILQKLGYEDPYLIE 153 >gi|156934830|ref|YP_001438746.1| putative metalloprotease [Cronobacter sakazakii ATCC BAA-894] gi|166228427|sp|A7MQS7|RRMF_ENTS8 RecName: Full=Probable rRNA maturation factor gi|156533084|gb|ABU77910.1| hypothetical protein ESA_02677 [Cronobacter sakazakii ATCC BAA-894] Length = 155 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENA-LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E+ DE +T V + + E+++ D Sbjct: 1 MSQVILDLQVACEDTTGLPDEAQFQTWLNAVVPQ------------FQEESEVTVRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG+DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGMDKPTNVLSFP--FEAPPGIDMPLLGDLIICRQVVEREAREQEKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A MEG+E I+ LG +DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEGIETEIMLALGFDDPYIAE 153 >gi|260597075|ref|YP_003209646.1| metal-binding heat shock protein [Cronobacter turicensis z3032] gi|260216252|emb|CBA29173.1| Putative metalloprotease ESA_02677 [Cronobacter turicensis z3032] Length = 155 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E+ + DE +T V + + E+++ D Sbjct: 1 MSQVILDLQVACEDTSGLPDEAQFQTWLNAVVPQ------------FQEESEVTVRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG+DKPTNVLSFP F + G +LGD+++ +++E EA K Sbjct: 49 AESHDLNLTYRGMDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEREAREQEKPLAA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A MEG+E I+ LG +DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEGIETEIMLALGFDDPYIAE 153 >gi|183598129|ref|ZP_02959622.1| hypothetical protein PROSTU_01494 [Providencia stuartii ATCC 25827] gi|188020288|gb|EDU58328.1| hypothetical protein PROSTU_01494 [Providencia stuartii ATCC 25827] Length = 155 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 86/167 (51%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E DE + E V K + E+++ D Sbjct: 1 MSEVILDLQLACEETTGLPDEALFQRWLEAVLPK------------FQPQSEVTIRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E Sbjct: 49 EESHHLNLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAIEQQKSAEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE IL +LG DPY + Sbjct: 107 HWAHMVVHGCLHLLGYDHIEDDEAEEMESLETEILAELGYADPYLAE 153 >gi|242238552|ref|YP_002986733.1| metalloprotease [Dickeya dadantii Ech703] gi|242130609|gb|ACS84911.1| protein of unknown function UPF0054 [Dickeya dadantii Ech703] Length = 161 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 85/164 (51%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA N E + E V + + + E+++ D Sbjct: 1 MSQVILDLQIACANQDGLPAESTFQRWLEAVLPQ------------FQEVAEVTVRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E Sbjct: 49 EESHHLNLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAAEQEKTTEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH++D +A ME LE I++ +G DPY Sbjct: 107 HWAHMVVHGCLHLLGYDHIEDSEAEEMEALETEIMQGMGYADPY 150 >gi|262402696|ref|ZP_06079257.1| predicted metal-dependent hydrolase [Vibrio sp. RC586] gi|262351478|gb|EEZ00611.1| predicted metal-dependent hydrolase [Vibrio sp. RC586] Length = 154 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L T E FA+ ++ I+ + E+++ D Sbjct: 4 ELDLQLAVEN-----ENGLPT--EADFAQWLTRTITP----FQPQAEVTIRIVDEKESHM 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|253687589|ref|YP_003016779.1| hypothetical protein PC1_1195 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645749|sp|C6DBX6|RRMF_PECCP RecName: Full=Probable rRNA maturation factor gi|251754167|gb|ACT12243.1| protein of unknown function UPF0054 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 159 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E A E E F + + ++ + + + E+++ D Sbjct: 1 MSQVILDLQIASEQAQGLPE-------EKDFQRWLEGVLPQ----FQEVSEVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H Sbjct: 50 ESRDLNNTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAAEQEKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|188534466|ref|YP_001908263.1| Conserved hypothetical protein (UPF0054) [Erwinia tasmaniensis Et1/99] gi|238689711|sp|B2VBL6|RRMF_ERWT9 RecName: Full=Probable rRNA maturation factor gi|188029508|emb|CAO97385.1| Conserved hypothetical protein (UPF0054) [Erwinia tasmaniensis Et1/99] Length = 155 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 83/159 (52%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A EN E + E V + + E+++ D Sbjct: 6 LDLQLACENEQGLPAETDFQRWLEAVLPQ------------FQPESEVTIRLVDEAESRE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR DKPTNVLSFP F + G +LGD+++ +++E EA GK E H H+ Sbjct: 54 LNHTYRSKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAVEQGKTREAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +IHG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VIHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYPDPY 150 >gi|163867520|ref|YP_001608719.1| hypothetical protein Btr_0248 [Bartonella tribocorum CIP 105476] gi|189039700|sp|A9IMW1|RRMF_BART1 RecName: Full=Probable rRNA maturation factor gi|161017166|emb|CAK00724.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 163 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 93/156 (59%), Gaps = 5/156 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I V++A W DE L + E A+ ++ + + E+SL+FTD + +N Sbjct: 4 IDIMVKDAGWNDEKMLYNITEKALTTAMHHVSLENV-----VSEISLLFTDDEHMAKINA 58 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++RG +K TNVLSFP + MLGDI++A E + +EA GK F++HL H+I+H Sbjct: 59 QWRGKNKSTNVLSFPAFPIKAGNPPGPMLGDIIIARETVVLEAEKQGKTFQDHLTHMIVH 118 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHLLGYDH D +A ME LER IL+ L I DPY Sbjct: 119 GILHLLGYDHETDDEAHQMEKLEREILQKLSIKDPY 154 >gi|91792174|ref|YP_561825.1| putative metalloprotease [Shewanella denitrificans OS217] gi|123061206|sp|Q12R24|RRMF_SHEDO RecName: Full=Probable rRNA maturation factor gi|91714176|gb|ABE54102.1| protein of unknown function UPF0054 [Shewanella denitrificans OS217] Length = 153 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 14/160 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIAV++ + T + + EL++ + ++ Sbjct: 6 DLDLQIAVDSNQLPSQADFETWVRTALGNTL------------DTAELTIRLVEIAESQS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+V+ ++E EA K + H H+ Sbjct: 54 LNHDYRGKDKPTNVLSFP--FEAPPGMELPLLGDLVICVAVVEQEALEQNKPLQAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +IHG LHLLGYDH+ D++A ME LE ++E LG ++PY+ Sbjct: 112 VIHGCLHLLGYDHIIDQEAEEMESLETQLIEGLGFSNPYK 151 >gi|147673894|ref|YP_001216433.1| putative metalloprotease [Vibrio cholerae O395] gi|153827447|ref|ZP_01980114.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153831226|ref|ZP_01983893.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|183179697|ref|ZP_02957908.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|262168626|ref|ZP_06036321.1| predicted metal-dependent hydrolase [Vibrio cholerae RC27] gi|172047421|sp|A5F2X4|RRMF_VIBC3 RecName: Full=Probable rRNA maturation factor gi|146315777|gb|ABQ20316.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148873296|gb|EDL71431.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149738624|gb|EDM52977.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|183013108|gb|EDT88408.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227012777|gb|ACP08987.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262022744|gb|EEY41450.1| predicted metal-dependent hydrolase [Vibrio cholerae RC27] Length = 154 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E +S+ + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAEFAL------WLSRTITPFQPQAEVTVRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|251790530|ref|YP_003005251.1| putative metalloprotease [Dickeya zeae Ech1591] gi|247539151|gb|ACT07772.1| protein of unknown function UPF0054 [Dickeya zeae Ech1591] Length = 161 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA E +L E + E V + + + E+++ D Sbjct: 1 MSQVILDLQIASEQSLGLPSEADFQRWLEAVLPQ------------FQEVAEVTIRVVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA GK E Sbjct: 49 EESHHLNLTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAVEQGKSTEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|307256716|ref|ZP_07538495.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261160|ref|ZP_07542836.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306864764|gb|EFM96668.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869142|gb|EFN00943.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 163 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 91/164 (55%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F + V ++ + E+++ D Sbjct: 1 MTTPIIDLQIAAENSE-----NLPSLAQ--FTQWVQRALAHEAQTEDFPETEITIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DK TNVLSFP F +G +LGD+++ +++E EA E+ Sbjct: 54 AESHELNLTYRGKDKSTNVLSFP--FEVPEGIELPLLGDLIICRQVVEKEAQEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D +A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDVEAEEMEGLETEIMQSLGFEDPY 155 >gi|319786434|ref|YP_004145909.1| hypothetical protein Psesu_0825 [Pseudoxanthomonas suwonensis 11-1] gi|317464946|gb|ADV26678.1| protein of unknown function UPF0054 [Pseudoxanthomonas suwonensis 11-1] Length = 163 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 V A++ ++ + +L++ D+ + LN YRG D TNVLSFP Sbjct: 19 AGVPAAQSFRKWVAAALAGRIREADLAIRIVDAPEGQALNRHYRGKDYATNVLSFPAEMP 78 Query: 92 S--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A Sbjct: 79 EGLPKGIKFPLLGDLVICAPVVAREAAEQGKPLAAHYAHLTVHGTLHLLGWDHEDDKEAE 138 Query: 150 VMEGLERSILEDLGINDPYEVD 171 ME LER IL LG+ DPY + Sbjct: 139 AMEQLEREILAGLGLPDPYAAE 160 >gi|120555651|ref|YP_960002.1| hypothetical protein Maqu_2740 [Marinobacter aquaeolei VT8] gi|145572774|sp|A1U496|RRMF_MARAV RecName: Full=Probable rRNA maturation factor gi|120325500|gb|ABM19815.1| protein of unknown function UPF0054 [Marinobacter aquaeolei VT8] Length = 157 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 15/166 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ +DLQ+A + + E + EN E+++ D+ Sbjct: 1 MSKVTVDLQMAFDGTGVPSKTLFEAWAEAAWQ-------------GENPTEVTIRIVDND 47 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG DKPTNVLSFP F + G + + GD+V+ ++E EA K+ H Sbjct: 48 ESRELNHQYRGKDKPTNVLSFP--FEAPAGITVPLAGDLVICAPVVEQEAREQNKDAVAH 105 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHL GYDH++ +A VME LE +L LG +PYE + Sbjct: 106 WAHMVVHGMLHLQGYDHIEVNEAEVMEALEIRLLAQLGFANPYEAE 151 >gi|226943046|ref|YP_002798119.1| putative metalloprotease [Azotobacter vinelandii DJ] gi|259710170|sp|C1DMW4|RRMF_AZOVD RecName: Full=Probable rRNA maturation factor gi|226717973|gb|ACO77144.1| conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 162 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 82/162 (50%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A L E R CE+ + ++ EL++ D Sbjct: 3 ELDLQVASVRPL-PAEDDFRRWCELALRQRSAD------------SELTIRLVDEEEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D PTNVLSFP +LGD+V+ ++E EA K + H HL Sbjct: 50 LNRTWRHKDYPTNVLSFPAEVPEG-LLDIPLLGDLVICVPVVEREAAEQDKAADAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH++D +A ME LER +L +LG DPY+ D Sbjct: 109 VIHGCLHLLGYDHIEDAEAEEMESLERDLLAELGYPDPYDGD 150 >gi|159184274|ref|NP_353390.2| hypothetical protein Atu0358 [Agrobacterium tumefaciens str. C58] gi|26006905|sp|Q8UID9|RRMF_AGRT5 RecName: Full=Probable rRNA maturation factor gi|159139601|gb|AAK86175.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 168 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 78/160 (48%), Positives = 96/160 (60%), Gaps = 1/160 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIET 69 LD+QI+VE W E +L V AV L + + VELSLVFTD I Sbjct: 4 LDIQISVEAEGWSSEENLAAFATKVLNAAVDFLKREEEQPFPKMPVELSLVFTDDENIRE 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+R DK TNVLSFP G MLGDIV+A E +E EA L K FE+HL HL Sbjct: 64 INAEWRDKDKATNVLSFPAFPLEPGGMPGPMLGDIVIARETVEREALELDKSFEDHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HGFLHL GYDH+D+++A ME LE IL LG++DPY Sbjct: 124 LVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSDPYA 163 >gi|262165202|ref|ZP_06032939.1| predicted metal-dependent hydrolase [Vibrio mimicus VM223] gi|262024918|gb|EEY43586.1| predicted metal-dependent hydrolase [Vibrio mimicus VM223] Length = 154 Score = 187 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 65/162 (40%), Positives = 93/162 (57%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE DE L T E FA+ ++ I+ + E+++ D Sbjct: 4 ELDLQLAVE-----DENGLPT--EADFAQWLTRTITP----FQPQAEVTIRIVDEEESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEHEAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|254361290|ref|ZP_04977433.1| possible metal-dependent hydrolase [Mannheimia haemolytica PHL213] gi|261493920|ref|ZP_05990429.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496864|ref|ZP_05993233.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092786|gb|EDN73829.1| possible metal-dependent hydrolase [Mannheimia haemolytica PHL213] gi|261307481|gb|EEY08815.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310423|gb|EEY11617.1| putative metal-dependent hydrolase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 160 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN E T + A + E+++ D Sbjct: 6 IDLQIACENTENLPSEQQFYTWVQKALA-------VEAKTDDFPESEITIRIVDEAESHE 58 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + +G +LGD+V+ +++E EA G E+H HL Sbjct: 59 LNLTYRGKDKPTNVLSFP--FEAPEGIEMPLLGDLVICRQVMEKEAEEQGISAESHWAHL 116 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH+++ +A ME LE I++ LG DPY Sbjct: 117 AIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPY 155 >gi|283834042|ref|ZP_06353783.1| putative metalloprotease YbeY [Citrobacter youngae ATCC 29220] gi|291070183|gb|EFE08292.1| putative metalloprotease YbeY [Citrobacter youngae ATCC 29220] Length = 157 Score = 187 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E DE L T E F + +I + + E+++ D Sbjct: 1 MSQVILDLQLACE-----DESGLPT--ESQFQGWLDAVIPQ----FQEESEVTIRLVDDA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DK TNVLSFP F + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKSTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYEDPYIAE 153 >gi|52425735|ref|YP_088872.1| putative metalloprotease [Mannheimia succiniciproducens MBEL55E] gi|59799096|sp|Q65RX3|RRMF_MANSM RecName: Full=Probable rRNA maturation factor gi|52307787|gb|AAU38287.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 156 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQIA E D+ +L TL + F +N + +F E+++ D Sbjct: 2 MKTVTIDLQIASE-----DQSNLPTLEQ--FTLWATNAVRAEHFEP----EITIRIVDEA 50 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LNF YRG D+PTNVLSFP F + +LGD+V+ +++E EA GK H Sbjct: 51 ESHELNFTYRGKDRPTNVLSFP--FECPEEVELPLLGDLVICRQVVEREAQEQGKPLTAH 108 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY D Sbjct: 109 WAHMVVHGSLHLLGYDHIEDDEAVEMESLETEIMTGLGFEDPYSYD 154 >gi|297581339|ref|ZP_06943263.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297534655|gb|EFH73492.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 154 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E +S+ + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAEFAL------WLSRTITPFQPQAEVTIRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++D+G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQDMGFTDPYLAE 152 >gi|121729827|ref|ZP_01682260.1| conserved hypothetical protein [Vibrio cholerae V52] gi|229512947|ref|ZP_04402413.1| hypothetical protein VCB_000590 [Vibrio cholerae TMA 21] gi|121628431|gb|EAX60925.1| conserved hypothetical protein [Vibrio cholerae V52] gi|229349840|gb|EEO14794.1| hypothetical protein VCB_000590 [Vibrio cholerae TMA 21] Length = 154 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQPQAEVTVRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|85058787|ref|YP_454489.1| hypothetical protein SG0809 [Sodalis glossinidius str. 'morsitans'] gi|123519813|sp|Q2NUU1|RRMF_SODGM RecName: Full=Probable rRNA maturation factor gi|84779307|dbj|BAE74084.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 156 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A + A E F + + ++ + + E+++ D Sbjct: 1 MSDVILDLQLACDEARGLP-------AEADFLRWLQGVLP----LFRDCAEVTVRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG D+PTNVLSFP F + +LGD+V+ ++++E EA K E H Sbjct: 50 ESHELNMTYRGKDRPTNVLSFP--FEAPPEVELPLLGDLVICHQVVEREAQQQEKALEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+ D++A ME LE I++ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIQDEEALEMESLETEIMQKLGYPDPYLAE 153 >gi|229529945|ref|ZP_04419335.1| hypothetical protein VCG_003049 [Vibrio cholerae 12129(1)] gi|229333719|gb|EEN99205.1| hypothetical protein VCG_003049 [Vibrio cholerae 12129(1)] gi|327483684|gb|AEA78091.1| metal-dependent hydrolase [Vibrio cholerae LMA3894-4] Length = 154 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQPQAEVTVRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++D+G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQDMGFTDPYLAE 152 >gi|240849890|ref|YP_002971278.1| hypothetical protein Bgr_02340 [Bartonella grahamii as4aup] gi|240267013|gb|ACS50601.1| hypothetical protein Bgr_02340 [Bartonella grahamii as4aup] Length = 163 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 89/157 (56%), Gaps = 5/157 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I V++ W DE L + E + ++ + E+SL+FTD + +N Sbjct: 4 IDIMVKSGGWNDEKMLYNITEKALMTTMHHVSLANV-----VSEISLLFTDDKHMAQINA 58 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R +K TNVLSFP + MLGDI++A E + +EA GK F++HL H+I+H Sbjct: 59 QWRNKNKSTNVLSFPAFPLKAGNPPGPMLGDIIIARETVVLEAEKQGKTFQDHLTHMIVH 118 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 G LHLLGYDH D +A ME LER IL+ L I DPY Sbjct: 119 GILHLLGYDHETDNEAYQMEKLEREILQKLSIKDPYA 155 >gi|227114978|ref|ZP_03828634.1| putative metalloprotease [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 159 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQIA E E E F + + ++ + + I E+++ D Sbjct: 1 MSQVILDLQIASEQTQGLPE-------EKDFQRWLEGVLPQ----FQEISEVTIRIVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F + +LGD+++ +++E E+ K E H Sbjct: 50 ESRDLNNTYRGKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVERESAEQEKTVEEH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|325291792|ref|YP_004277656.1| hypothetical protein AGROH133_03547 [Agrobacterium sp. H13-3] gi|325059645|gb|ADY63336.1| hypothetical protein AGROH133_03547 [Agrobacterium sp. H13-3] Length = 168 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 77/160 (48%), Positives = 94/160 (58%), Gaps = 1/160 (0%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIET 69 LD+QI+VE W E L AV L + + VELSLVFTD I Sbjct: 4 LDIQISVEAEGWSSEEDLLAFATKALDAAVDFLKREENQPFPKMPVELSLVFTDDENIRE 63 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N E+R DK TNVLSFP G MLGDIV+A E +E EA L K FE+HL HL Sbjct: 64 INAEWRDKDKATNVLSFPAFPLEPGGMPGPMLGDIVIARETVEREALELEKSFEDHLTHL 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HGFLHL GYDH+D+++A ME LE IL LG++DPY Sbjct: 124 LVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSDPYA 163 >gi|260582082|ref|ZP_05849877.1| metal-dependent hydrolase [Haemophilus influenzae NT127] gi|260094972|gb|EEW78865.1| metal-dependent hydrolase [Haemophilus influenzae NT127] Length = 154 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 84/161 (52%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN E + + + N VE+++ D + L Sbjct: 6 VDLQIATENIEGLP-------TEEQIVQWATGAVQPEG----NEVEMTVRIVDEAESQEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I++ LG DPY + Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFADPYLAE 153 >gi|153213843|ref|ZP_01949049.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124115677|gb|EAY34497.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 154 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQAQAEVTVRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|254509288|ref|ZP_05121380.1| putative metalloprotease [Vibrio parahaemolyticus 16] gi|219547776|gb|EED24809.1| putative metalloprotease [Vibrio parahaemolyticus 16] Length = 154 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 84/163 (51%), Gaps = 15/163 (9%) Query: 10 RLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ AVE N E +T + + EL++ D Sbjct: 4 ELDLQFAVESNEGLPTEQDFQTWLDKTI------------IPFQQDAELTIRIVDEEESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP F G +LGD+++ +++E EA K H H Sbjct: 52 QLNHEYRGKDKPTNVLSFP--FEVPPGIEINLLGDLIICKQVVEREAQEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFEDPYLAE 152 >gi|323138530|ref|ZP_08073598.1| protein of unknown function UPF0054 [Methylocystis sp. ATCC 49242] gi|322396164|gb|EFX98697.1| protein of unknown function UPF0054 [Methylocystis sp. ATCC 49242] Length = 172 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ I + W L L + +++ +K ELS+ F D I L Sbjct: 3 VDIDILISTPAWESFEGLEALAQDCVRASLAESGAK----LAPGCELSVNFCDDAEIREL 58 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG DKPTNVLSFPT + +LGDIV+AYE + EA K +H H++ Sbjct: 59 NAEWRGKDKPTNVLSFPTPGT---LANRPLLGDIVIAYETVAREAGEQAKTLRDHTAHMV 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 IHGFLHL+GYDH +A ME LER I LG+ DPY Sbjct: 116 IHGFLHLIGYDHETSAEAETMEALERRIAAGLGLRDPYA 154 >gi|315634775|ref|ZP_07890057.1| metal-dependent hydrolase [Aggregatibacter segnis ATCC 33393] gi|315476327|gb|EFU67077.1| metal-dependent hydrolase [Aggregatibacter segnis ATCC 33393] Length = 154 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 84/158 (53%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA E E L T A+ + + + + VE+++ D L Sbjct: 6 IDLQIACE-----QESGLPT------AEQIEQWATAAVQPQSDEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLNYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAQEQDKPVMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLEAQIMTGLGFADPY 150 >gi|229523248|ref|ZP_04412655.1| hypothetical protein VIF_000104 [Vibrio cholerae TM 11079-80] gi|262190519|ref|ZP_06048763.1| predicted metal-dependent hydrolase [Vibrio cholerae CT 5369-93] gi|229339611|gb|EEO04626.1| hypothetical protein VIF_000104 [Vibrio cholerae TM 11079-80] gi|262033592|gb|EEY52086.1| predicted metal-dependent hydrolase [Vibrio cholerae CT 5369-93] Length = 154 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQPQAEVTIRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|71280897|ref|YP_270242.1| hypothetical protein CPS_3574 [Colwellia psychrerythraea 34H] gi|123631588|sp|Q47Y78|RRMF_COLP3 RecName: Full=Probable rRNA maturation factor gi|71146637|gb|AAZ27110.1| conserved hypothetical protein TIGR00043 [Colwellia psychrerythraea 34H] Length = 155 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 10/158 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQ+A + F V +++ EL++ ++ + L Sbjct: 5 IDLQVACTPTKLP--------TKEQFQLWVDTALAEVSSSPNQDFELTIRLVNNEESQQL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR DKPTNVLSFP F DG +LGD+++ E+++ EA K H HL+ Sbjct: 57 NKQYRDKDKPTNVLSFP--FEVPDGIELNLLGDLIICIEVMKQEAQEQNKALFEHWAHLV 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHL+G+DH+ D +A ME +E +ILE LGI++PY Sbjct: 115 IHGCLHLVGFDHISDTEALEMESIEITILEKLGISNPY 152 >gi|145298101|ref|YP_001140942.1| hypothetical protein ASA_1072 [Aeromonas salmonicida subsp. salmonicida A449] gi|166228140|sp|A4SJX2|RRMF_AERS4 RecName: Full=Probable rRNA maturation factor gi|142850873|gb|ABO89194.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 154 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 15/162 (9%) Query: 11 LDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A + E L+ + + E+++ D Sbjct: 5 LDLQLACADTDGLPGEAQLQGWLDGTI------------LGFQEEAEVTVRIVDEAESRE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K E H H+ Sbjct: 53 LNLTYRGKDKPTNVLSFP--FEAPPGMELPLLGDLVICRQVVEQEATEQNKPLEAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LER I+++LG DPY D Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMEQLERDIMQELGFADPYLND 152 >gi|15602910|ref|NP_245982.1| putative metalloprotease [Pasteurella multocida subsp. multocida str. Pm70] gi|13431990|sp|P57900|RRMF_PASMU RecName: Full=Probable rRNA maturation factor gi|12721379|gb|AAK03129.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 158 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 84/159 (52%), Gaps = 15/159 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQ+ EN E ++ S+ VE+++ D Sbjct: 6 IDLQLVCENTDNLPSEAQIQAWANRAIQPEFSD------------VEMTVRIVDEAESHD 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F D +LGD+V+ +++E EA GK H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FECPDEVELSLLGDLVICRQVVEKEAEEQGKPLMAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A MEGLE I++ LG +DPY Sbjct: 112 VVHGCLHLLGYDHIEDAEAEEMEGLETEIMQSLGFDDPY 150 >gi|68248555|ref|YP_247667.1| putative metalloprotease [Haemophilus influenzae 86-028NP] gi|148827164|ref|YP_001291917.1| putative metalloprotease [Haemophilus influenzae PittGG] gi|81337018|sp|Q4QPP0|RRMF_HAEI8 RecName: Full=Probable rRNA maturation factor gi|166228383|sp|A5UFH8|RRMF_HAEIG RecName: Full=Probable rRNA maturation factor gi|68056754|gb|AAX87007.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP] gi|148718406|gb|ABQ99533.1| hypothetical protein CGSHiGG_02480 [Haemophilus influenzae PittGG] gi|309972862|gb|ADO96063.1| Conserved hypothetical protein [Haemophilus influenzae R2846] Length = 154 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN + + + + + + N VE+++ D L Sbjct: 6 VDLQIATEN-----------IEGLPTEEQIVQWATGAVQPEGNEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 113 VHGCLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|319403638|emb|CBI77223.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 158 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I +E+A W +E L + E + +L + E ELSL+FTD + Sbjct: 1 MISIDITIESAKWNNEKMLYNITEKALVTTLQHLS-----LNEITSELSLLFTDDTHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N +R +KPTNVLSFP + LMLGDIV+A E + EA K F++HL H+ Sbjct: 56 INARWRNHNKPTNVLSFPAFPLKAGQNPKLMLGDIVIAQETVMREAEEEKKSFQDHLTHI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IIHG LHLLGYDH + +A ME LE+ IL+ L I DPY Sbjct: 116 IIHGILHLLGYDHETNDEANQMEKLEKEILQKLTIKDPY 154 >gi|301168606|emb|CBW28195.1| conserved protein [Haemophilus influenzae 10810] Length = 154 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN E + + I N VE+++ D L Sbjct: 6 VDLQIATENIEGLP-------TEEQIVQWATAAIQPEG----NEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 113 VHGCLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|307130058|ref|YP_003882074.1| hypothetical protein Dda3937_02469 [Dickeya dadantii 3937] gi|306527587|gb|ADM97517.1| conserved protein [Dickeya dadantii 3937] Length = 161 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA EN + E + E V + + + E+++ D Sbjct: 1 MSQVILDLQIASENNSGLPSEADFQRWLEAVLPQ------------FQEVAEVTIRVVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YR DKPTNVLSFP F + +LGD+++ +++E EA GK E Sbjct: 49 EESHHLNLTYRCKDKPTNVLSFP--FEAPPEVELPLLGDLIICRQVVEQEAVEQGKSAEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDSEAEEMEALETEIMQSMGYADPYLAE 153 >gi|302185145|ref|ZP_07261818.1| putative metalloprotease [Pseudomonas syringae pv. syringae 642] Length = 166 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 87/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E + DE R CE+ + ++ EL++ D Sbjct: 3 ELDLQVASETSA-PDEAQFRLWCEMGLRQRSAD------------SELTIRLVDESEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEADEMEALERTLLEELGYPDPYADD 150 >gi|152969255|ref|YP_001334364.1| putative metalloprotease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580847|ref|YP_002239693.1| conserved hypothetical protein TIGR00043 [Klebsiella pneumoniae 342] gi|238893719|ref|YP_002918453.1| putative metalloprotease [Klebsiella pneumoniae NTUH-K2044] gi|262041256|ref|ZP_06014467.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936535|ref|YP_003440594.1| hypothetical protein Kvar_3682 [Klebsiella variicola At-22] gi|290510409|ref|ZP_06549779.1| metalloprotease [Klebsiella sp. 1_1_55] gi|330005962|ref|ZP_08305446.1| translation metalloprotein YbeY [Klebsiella sp. MS 92-3] gi|167016753|sp|A6T6B3|RRMF_KLEP7 RecName: Full=Probable rRNA maturation factor gi|226701661|sp|B5XZQ2|RRMF_KLEP3 RecName: Full=Probable rRNA maturation factor gi|150954104|gb|ABR76134.1| hypothetical protein KPN_00684 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569905|gb|ACI11681.1| conserved hypothetical protein TIGR00043 [Klebsiella pneumoniae 342] gi|238546035|dbj|BAH62386.1| hypothetical protein KP1_1641 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041372|gb|EEW42432.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891244|gb|ADC59562.1| protein of unknown function UPF0054 [Klebsiella variicola At-22] gi|289777125|gb|EFD85123.1| metalloprotease [Klebsiella sp. 1_1_55] gi|328536034|gb|EGF62440.1| translation metalloprotein YbeY [Klebsiella sp. MS 92-3] Length = 157 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E + DE + + V + EL++ D Sbjct: 1 MSQVILDLQLACEETSGLPDEALFQRWVDAVIP------------PFQEESELTIRLVDV 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA+ GK E Sbjct: 49 AESHELNLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEASEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH++D +A MEGLE I+ LG DPY Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEGLETEIMLALGYEDPY 150 >gi|254285630|ref|ZP_04960594.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150424492|gb|EDN16429.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 154 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQTQAEVTIRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G + +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPPGMAMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++D+G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQDMGFTDPYLAE 152 >gi|320157149|ref|YP_004189528.1| metal-dependent hydrolase [Vibrio vulnificus MO6-24/O] gi|319932461|gb|ADV87325.1| metal-dependent hydrolase [Vibrio vulnificus MO6-24/O] Length = 154 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE D+ L + A+ + K + E+++ DS Sbjct: 4 ELDLQLAVE-----DQNGLPS------AQDFQTWLDKTIPPFQPQAEVTIRIVDSQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEQEAIEQDKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPYLAE 152 >gi|319774955|ref|YP_004137443.1| hypothetical protein HICON_02870 [Haemophilus influenzae F3047] gi|329123148|ref|ZP_08251718.1| metal-dependent hydrolase [Haemophilus aegyptius ATCC 11116] gi|317449546|emb|CBY85750.1| conserved protein [Haemophilus influenzae F3047] gi|327471703|gb|EGF17145.1| metal-dependent hydrolase [Haemophilus aegyptius ATCC 11116] Length = 154 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 84/162 (51%), Gaps = 15/162 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN E + V + N VE+++ D Sbjct: 6 VDLQIATENIEGLPTEEQIVQWATVAIQ------------PEGNEVEMTVRIVDEAESHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H+ Sbjct: 54 LNLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 112 VVHGCLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|332288753|ref|YP_004419605.1| putative metalloprotease [Gallibacterium anatis UMN179] gi|330431649|gb|AEC16708.1| putative metalloprotease [Gallibacterium anatis UMN179] Length = 158 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA E D+ +L TL + + ++ +++ VE+++ D L Sbjct: 9 VDLQIASE-----DQSNLPTL------QQFTYWATQAVKPQQDNVEMTIRIVDEEESHHL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 NF YRG D+PTNVLSFP F +G + +LGD+V+ +++E EA E H HL Sbjct: 58 NFTYRGKDRPTNVLSFP--FEVPEGIALPLLGDLVICRQVVEKEAQEQQISLEAHYAHLT 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ +G DPY Sbjct: 116 VHGCLHLLGYDHIEDDEAEEMENLETEIMLSMGYADPY 153 >gi|300715841|ref|YP_003740644.1| conserved uncharacterized protein YbeY [Erwinia billingiae Eb661] gi|299061677|emb|CAX58793.1| conserved uncharacterized protein YbeY [Erwinia billingiae Eb661] Length = 157 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E A E R E V + + E+++ D Sbjct: 1 MSTVILDLQLACEKPAGLPAESDFRRWLEAVLPQ------------FQEESEVTVRVVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K Sbjct: 49 AESHELNHTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEKEAAEQEKPVLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH++D +A ME +E I+ LG +DPY Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEADEMESIETEIMLALGYDDPY 150 >gi|319406554|emb|CBI80196.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 158 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I +E+A W +E L + E + +L + E ELSL+FTD + Sbjct: 1 MVSIDITIESAKWNNEKMLYNITEKALVTTLQHLS-----LNEITSELSLLFTDDTHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N +R +KPTNVLSFP + LMLGDIV+A E + EA K F++HL H+ Sbjct: 56 INARWRNHNKPTNVLSFPAFPLKAGQNPKLMLGDIVIAQETVMREAEEEKKSFQDHLTHI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IIHG LHLLGYDH + +A ME LE+ IL+ L I DPY Sbjct: 116 IIHGILHLLGYDHETNDEANQMEKLEKEILQKLTIKDPY 154 >gi|229047214|ref|NP_933708.2| putative metalloprotease [Vibrio vulnificus YJ016] gi|46577353|sp|Q7MN02|RRMF_VIBVY RecName: Full=Probable rRNA maturation factor Length = 154 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE D+ L + A+ + K + E+++ DS Sbjct: 4 ELDLQLAVE-----DQNGLPS------AQDFQTWLDKTIPPFQPQAEVTIRIVDSQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEQEAIEQDKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPYLAE 152 >gi|268590391|ref|ZP_06124612.1| putative metalloprotease [Providencia rettgeri DSM 1131] gi|291314304|gb|EFE54757.1| putative metalloprotease [Providencia rettgeri DSM 1131] Length = 155 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA EN E F + ++ ++ K + + E+++ D L Sbjct: 6 LDLQIACENPNGLP-------SEAEFQRWLAAVLPK----FQALSEVTIRVVDEQESHHL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ +++E EA K E H H++ Sbjct: 55 NLTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQEAIDQQKTAEEHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A MEGLE IL +LG DPY + Sbjct: 113 VHGCLHLLGYDHIEDDEAEEMEGLETEILAELGYEDPYLAE 153 >gi|256821543|ref|YP_003145506.1| hypothetical protein Kkor_0317 [Kangiella koreensis DSM 16069] gi|256795082|gb|ACV25738.1| protein of unknown function UPF0054 [Kangiella koreensis DSM 16069] Length = 169 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A +++ DEI ++ F + + E+++ + + L Sbjct: 9 LDLQVACDSSTVPDEIDIKQWLATAFEVEAAKFGRAKTLAQP--FEMTVRVVEQAESQAL 66 Query: 71 NFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 N +YRG D PTNVLSFP +G +LGD+ + E++E EA KE +H H+ Sbjct: 67 NNDYRGKDNPTNVLSFPFEMPEGIEGLELSILGDLAICAEVVEQEAAEQKKELRSHWTHM 126 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HG LHLLGYDH+ D +A ME LE IL LG+ +PY+ Sbjct: 127 VVHGGLHLLGYDHIKDNEALEMESLEIEILAQLGVENPYQ 166 >gi|261343535|ref|ZP_05971180.1| putative metalloprotease [Providencia rustigianii DSM 4541] gi|282568684|gb|EFB74219.1| putative metalloprotease [Providencia rustigianii DSM 4541] Length = 155 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 86/167 (51%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA EN E + V K + E+++ D Sbjct: 1 MSDVILDLQIASENIEGLPSEAMFQHWVNAVLPK------------FQAESEVTIRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLIICRQVVEKEATEQQKSEEE 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A MEGLE IL ++G DPY + Sbjct: 107 HWAHMVVHGCLHLLGYDHIEDDEAEEMEGLETEILAEMGYADPYLAE 153 >gi|145630707|ref|ZP_01786486.1| hypothetical protein CGSHi22421_02154 [Haemophilus influenzae R3021] gi|144983833|gb|EDJ91283.1| hypothetical protein CGSHi22421_02154 [Haemophilus influenzae R3021] Length = 154 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN + + + + + + N VE+++ D + L Sbjct: 6 VDLQIATEN-----------IEGLPTEEQIVQWATGAVQPEGNEVEMTVRIVDEAESQEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|237730636|ref|ZP_04561117.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226906175|gb|EEH92093.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 155 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E DE L T E F + +I + + E+++ D Sbjct: 1 MSQVILDLQLACE-----DESGLPT--ESQFQGWLDAVIPQ----FQEESEVTIRLVDDA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DK TNVLSFP F + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHDLNLTYRGKDKSTNVLSFP--FEAPPGIEMSLLGDLIICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMLALGYEDPYIAE 153 >gi|251791997|ref|YP_003006717.1| putative metalloprotease [Aggregatibacter aphrophilus NJ8700] gi|247533384|gb|ACS96630.1| putative metalloprotease in flp 5' region [Aggregatibacter aphrophilus NJ8700] Length = 154 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 85/158 (53%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA E E L T A+ + + + + VE+++ D L Sbjct: 6 IDLQIACE-----QETGLPT------AEQIEQWATVAVQPQTDEVEMTVRIVDEAESHAL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA GK H H++ Sbjct: 55 NLNYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAQEQGKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMIGLGFVDPY 150 >gi|323495443|ref|ZP_08100520.1| metal-binding heat shock protein [Vibrio brasiliensis LMG 20546] gi|323310366|gb|EGA63553.1| metal-binding heat shock protein [Vibrio brasiliensis LMG 20546] Length = 154 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE+ E L +L ++ +S + E+++ D Sbjct: 4 ELDLQLAVES-----EDGLPSLEDIQL------WLSSAVTKFQPQAEVTVRIVDEQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEAPPGMEIDLLGDLIICRQVVEREAIEQNKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFEDPYLAE 152 >gi|319405108|emb|CBI78712.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 158 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 93/159 (58%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I +E+A W DE L + + + +L + E ELSL+FTD R+ Sbjct: 1 MIAIDITIESAKWNDEEMLYNITDKALVTTLQHLS-----LNEITSELSLLFTDDTRMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +KPTNVLSFP + LMLGDIV+A E + EA K F++HL H+ Sbjct: 56 INAQWRHHNKPTNVLSFPAFPLKAGQNPRLMLGDIVIAQETVMREAEEERKSFQDHLTHI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IIHG LHLLGYDH + +A ME LE+ IL+ L I DPY Sbjct: 116 IIHGILHLLGYDHETNNEANQMEKLEKEILQKLSIKDPY 154 >gi|121601777|ref|YP_989494.1| hypothetical protein BARBAKC583_1245 [Bartonella bacilliformis KC583] gi|145572753|sp|A1UU41|RRMF_BARBK RecName: Full=Probable rRNA maturation factor gi|120613954|gb|ABM44555.1| conserved hypothetical protein TIGR00043 [Bartonella bacilliformis KC583] Length = 158 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 69/159 (43%), Positives = 94/159 (59%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + +ENA WGDE L T+ E + L + + ELSL+FT++ R+ Sbjct: 1 MISINMTIENAEWGDEKILYTITEKALIATIDRLS-----LTQVTSELSLLFTNNMRMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +KPTNVLSFP + MLGDIVLA E I EA GK F +HL H+ Sbjct: 56 INTQWRNKNKPTNVLSFPAFPLKAGQNPGPMLGDIVLARETIVYEAEEEGKSFHDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGYDH D +A ME LE+ IL+ + I +PY Sbjct: 116 IVHGILHLLGYDHETDDEAYQMEELEKEILQKIAIKNPY 154 >gi|15640976|ref|NP_230607.1| putative metalloprotease [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591013|ref|ZP_01678330.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153820004|ref|ZP_01972671.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153823312|ref|ZP_01975979.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081134|ref|YP_002809685.1| hypothetical protein VCM66_0916 [Vibrio cholerae M66-2] gi|229505440|ref|ZP_04394950.1| hypothetical protein VCF_000648 [Vibrio cholerae BX 330286] gi|229510890|ref|ZP_04400369.1| hypothetical protein VCE_002297 [Vibrio cholerae B33] gi|229518011|ref|ZP_04407455.1| hypothetical protein VCC_002035 [Vibrio cholerae RC9] gi|229608459|ref|YP_002879107.1| metalloprotease [Vibrio cholerae MJ-1236] gi|254848091|ref|ZP_05237441.1| metalloprotease [Vibrio cholerae MO10] gi|255744743|ref|ZP_05418694.1| predicted metal-dependent hydrolase [Vibrio cholera CIRS 101] gi|262161123|ref|ZP_06030234.1| predicted metal-dependent hydrolase [Vibrio cholerae INDRE 91/1] gi|298498924|ref|ZP_07008731.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|26006919|sp|Q9KTE2|RRMF_VIBCH RecName: Full=Probable rRNA maturation factor gi|254807269|sp|C3LTK8|RRMF_VIBCM RecName: Full=Probable rRNA maturation factor gi|9655419|gb|AAF94122.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547123|gb|EAX57255.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126509455|gb|EAZ72049.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519176|gb|EAZ76399.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227009022|gb|ACP05234.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229344726|gb|EEO09700.1| hypothetical protein VCC_002035 [Vibrio cholerae RC9] gi|229350855|gb|EEO15796.1| hypothetical protein VCE_002297 [Vibrio cholerae B33] gi|229357663|gb|EEO22580.1| hypothetical protein VCF_000648 [Vibrio cholerae BX 330286] gi|229371114|gb|ACQ61537.1| hypothetical protein VCD_003377 [Vibrio cholerae MJ-1236] gi|254843796|gb|EET22210.1| metalloprotease [Vibrio cholerae MO10] gi|255737774|gb|EET93168.1| predicted metal-dependent hydrolase [Vibrio cholera CIRS 101] gi|262028873|gb|EEY47526.1| predicted metal-dependent hydrolase [Vibrio cholerae INDRE 91/1] gi|297543257|gb|EFH79307.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 154 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E +++ + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAEFAL------WLTRTITPFQAQAEVTVRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPSGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|310766986|gb|ADP11936.1| conserved uncharacterized protein YbeY [Erwinia sp. Ejp617] Length = 155 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 83/164 (50%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + LDLQ+A ++ E + E V + + E+++ D Sbjct: 1 MTQVILDLQLACKSEQGLPTEADFQRWLEAVLPQ------------FQPESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHQLNHTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAAEQEKVLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H++IHG LHLLGYDH+ D +A ME LE I+ LG DPY Sbjct: 107 HWAHMVIHGSLHLLGYDHIVDDEAEEMESLETEIMLALGYPDPY 150 >gi|229525570|ref|ZP_04414975.1| hypothetical protein VCA_003202 [Vibrio cholerae bv. albensis VL426] gi|229339151|gb|EEO04168.1| hypothetical protein VCA_003202 [Vibrio cholerae bv. albensis VL426] Length = 154 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + E + + + E+++ D Sbjct: 4 ELDLQLAVEN-----EHGLPSEAEFAL------WLIRTITPFQPQAEVTIRIVDEAESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K + H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FETPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAE 152 >gi|15599177|ref|NP_252671.1| metalloprotease [Pseudomonas aeruginosa PAO1] gi|107103500|ref|ZP_01367418.1| hypothetical protein PaerPA_01004570 [Pseudomonas aeruginosa PACS2] gi|116052021|ref|YP_789136.1| putative metalloprotease [Pseudomonas aeruginosa UCBPP-PA14] gi|254236875|ref|ZP_04930198.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254242668|ref|ZP_04935990.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296387490|ref|ZP_06876965.1| putative metalloprotease [Pseudomonas aeruginosa PAb1] gi|313109422|ref|ZP_07795382.1| hypothetical protein PA39016_001790022 [Pseudomonas aeruginosa 39016] gi|26006910|sp|Q9HX37|RRMF_PSEAE RecName: Full=Probable rRNA maturation factor gi|122261168|sp|Q02SF0|RRMF_PSEAB RecName: Full=Probable rRNA maturation factor gi|9950173|gb|AAG07369.1|AE004816_5 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115587242|gb|ABJ13257.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126168806|gb|EAZ54317.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196046|gb|EAZ60109.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|310881884|gb|EFQ40478.1| hypothetical protein PA39016_001790022 [Pseudomonas aeruginosa 39016] Length = 160 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 78/162 (48%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E R CE+ + EL++ D Sbjct: 4 ELDLQVASAAPDLPSEAQFRAWCELALRQR-------------PESELTIRLVDEAEGLE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVLSFP A + +LGD+V+ ++ EA K + H HL Sbjct: 51 LNSTYRHKDYATNVLSFP-ADVPDELLDIPLLGDLVICAPVVAREALEQRKPLQAHWAHL 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 110 VIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|323499964|ref|ZP_08104922.1| metal-binding heat shock protein [Vibrio sinaloensis DSM 21326] gi|323314981|gb|EGA68034.1| metal-binding heat shock protein [Vibrio sinaloensis DSM 21326] Length = 155 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE DE L T + + ++ + E+++ D Sbjct: 4 ELDLQLAVE-----DESGLPTFDD------IHLWLNSAVAKFQPQAEVTVRLVDEQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LNF+YRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNFDYRGKDKPTNVLSFP--FEAPPGIEMDLLGDLIICRQVVEREAIEQQKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFLDPYLAE 152 >gi|127513853|ref|YP_001095050.1| putative metalloprotease [Shewanella loihica PV-4] gi|171855250|sp|A3QH43|RRMF_SHELP RecName: Full=Probable rRNA maturation factor gi|126639148|gb|ABO24791.1| protein of unknown function UPF0054 [Shewanella loihica PV-4] Length = 157 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A + + + + + E+++ D + L Sbjct: 11 LDLQVATQAEQLPSQEEFESWVRLALGNVM------------PEAEMTIRLVDEAESQQL 58 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F S +LGD+V+ ++E EA + GK H H++ Sbjct: 59 NHTYRGKDKPTNVLSFP--FESPPEVELPLLGDLVICVPVVEQEAEIQGKSLTAHWAHMV 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH+ D +A ME LE ++E LG +PY+ Sbjct: 117 VHGCLHLLGYDHIIDSEAEEMESLETQLIESLGFPNPYK 155 >gi|229845426|ref|ZP_04465556.1| putative metalloprotease [Haemophilus influenzae 6P18H1] gi|319896426|ref|YP_004134619.1| hypothetical protein HIBPF00040 [Haemophilus influenzae F3031] gi|229811622|gb|EEP47321.1| putative metalloprotease [Haemophilus influenzae 6P18H1] gi|317431928|emb|CBY80274.1| conserved protein [Haemophilus influenzae F3031] Length = 154 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN + + + + + + N VE+++ D L Sbjct: 6 VDLQIATEN-----------IEGLPTEEQIVQWATGAVQPEGNEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|259909114|ref|YP_002649470.1| hypothetical protein YbeY [Erwinia pyrifoliae Ep1/96] gi|224964736|emb|CAX56253.1| conserved uncharacterized protein YbeY [Erwinia pyrifoliae Ep1/96] gi|283479141|emb|CAY75057.1| putative metalloprotease ybeY [Erwinia pyrifoliae DSM 12163] Length = 155 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 83/164 (50%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + LDLQ+A ++ E + E V + + E+++ D Sbjct: 1 MTQVILDLQLACKSEQGLPTEGDFQRWLEAVLPQ------------FQPESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHQLNHTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAAEQEKVLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H++IHG LHLLGYDH+ D +A ME LE I+ LG DPY Sbjct: 107 HWAHMVIHGSLHLLGYDHIVDDEAEEMESLETEIMLALGYPDPY 150 >gi|16271980|ref|NP_438177.1| putative metalloprotease [Haemophilus influenzae Rd KW20] gi|145636793|ref|ZP_01792459.1| hypothetical protein CGSHiHH_06750 [Haemophilus influenzae PittHH] gi|145641868|ref|ZP_01797443.1| hypothetical protein CGSHiR3021_01322 [Haemophilus influenzae R3021] gi|260580692|ref|ZP_05848519.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|2495567|sp|P71335|RRMF_HAEIN RecName: Full=Probable rRNA maturation factor gi|60593985|pdb|1XAX|A Chain A, Nmr Structure Of Hi0004, A Putative Essential Gene Product From Haemophilus Influenzae gi|1572948|gb|AAC21683.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|145270091|gb|EDK10028.1| hypothetical protein CGSHiHH_06750 [Haemophilus influenzae PittHH] gi|145273490|gb|EDK13361.1| hypothetical protein CGSHiR3021_01322 [Haemophilus influenzae 22.4-21] gi|260092754|gb|EEW76690.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 154 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN + + + + + + N VE+++ D L Sbjct: 6 VDLQIATEN-----------IEGLPTEEQIVQWATGAVQPEGNEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA+ K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREASEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|229846922|ref|ZP_04467028.1| putative metalloprotease [Haemophilus influenzae 7P49H1] gi|229810006|gb|EEP45726.1| putative metalloprotease [Haemophilus influenzae 7P49H1] Length = 154 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN + + + + + + N VE+++ D L Sbjct: 6 VDLQIATEN-----------IEGLPTEEQIVQWATGAVQPEGNEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAVEQDKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|218708743|ref|YP_002416364.1| putative metalloprotease [Vibrio splendidus LGP32] gi|254806592|sp|B7VKG1|RRMF_VIBSL RecName: Full=Probable rRNA maturation factor gi|218321762|emb|CAV17717.1| Hypothetical protein VS_0722 [Vibrio splendidus LGP32] Length = 153 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L T + + + K + EL++ D+ Sbjct: 4 ELDLQLAVEN-----EQGLPT------EQDIQLWLDKTIPQFQENAELTVRIVDTQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHEYRGKDKPTNVLSFP--FEAPPGIELDLLGDLIICRQVVEKEAEEQSKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY ++ Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQSMGFEDPYILE 152 >gi|260913090|ref|ZP_05919572.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260632677|gb|EEX50846.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 156 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 88/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN +L T + + ++ + + VE+++ D L Sbjct: 6 IDLQIATENTE-----NLPTEAQ------IQEWANRAVQPELSDVEMTVRIVDEAESHDL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 NF YRG DKPTNVLSFP F D +LGD+V+ +++E EA GK H H++ Sbjct: 55 NFTYRGKDKPTNVLSFP--FECPDEVELGLLGDLVICRQVVEKEAEEQGKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I++ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMENLETEIMQSLGFEDPY 150 >gi|148981400|ref|ZP_01816396.1| hypothetical protein VSWAT3_09548 [Vibrionales bacterium SWAT-3] gi|145960892|gb|EDK26222.1| hypothetical protein VSWAT3_09548 [Vibrionales bacterium SWAT-3] Length = 153 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L T ++ + K + EL++ D+ Sbjct: 4 ELDLQLAVEN-----EQGLPTEHDIQL------WLDKTIPQFQKSAELTIRIVDTEESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP F + G LGD+++ +++E EA K H H+ Sbjct: 53 LNHEYRGKDKPTNVLSFP--FEAPPGIELDFLGDLIICRQVVEKEAEEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY ++ Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQAMGFEDPYILE 152 >gi|27363747|ref|NP_759275.1| metal-binding heat shock protein [Vibrio vulnificus CMCP6] gi|29428187|sp|Q8DFE6|RRMF_VIBVU RecName: Full=Probable rRNA maturation factor gi|27359863|gb|AAO08802.1| predicted metal-dependent hydrolase [Vibrio vulnificus CMCP6] Length = 154 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE D+ L + A+ + K + E+++ DS Sbjct: 4 ELDLQLAVE-----DQNGLPS------AQDFQTWLDKTIPPFQPQAEVTIRIVDSQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEAPPGMEMDLLGDLVICRQVVEQEAIDQDKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGFTDPYLAE 152 >gi|59711364|ref|YP_204140.1| putative metalloprotease [Vibrio fischeri ES114] gi|71658769|sp|Q5E6U4|RRMF_VIBF1 RecName: Full=Probable rRNA maturation factor gi|59479465|gb|AAW85252.1| conserved protein [Vibrio fischeri ES114] Length = 153 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 85/163 (52%), Gaps = 15/163 (9%) Query: 10 RLDLQIAVENA-LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA EN E L T V + + EL++ D Sbjct: 4 ELDLQIACENENGLPSEKELMTWLNAVIPQ------------FQPQAELTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H Sbjct: 52 ELNHEYRGKDKPTNVLSFP--FEAPPGLELNLLGDLIICRQVVEEEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE +++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETELMQGMGFEDPYIAE 152 >gi|229592785|ref|YP_002874904.1| putative metalloprotease [Pseudomonas fluorescens SBW25] gi|259647080|sp|C3K2K8|RRMF_PSEFS RecName: Full=Probable rRNA maturation factor gi|229364651|emb|CAY52573.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 164 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E E R C + + ++ EL++ D Sbjct: 3 ELDLQLATEAPA-PSEAQFREWCALALRQRTAD------------SELTIRLVDEPEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D TNVLSFP A + +LGD+V+ E++E EA GKE E H HL Sbjct: 50 LNHTWRQKDYATNVLSFP-ADVPDELLDIPLLGDLVICVEVVEREAKEQGKELEAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD +A ME LE+++L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDDEAEEMETLEQTLLAELGHPDPYADD 150 >gi|84394392|ref|ZP_00993111.1| hypothetical protein V12B01_09906 [Vibrio splendidus 12B01] gi|84374994|gb|EAP91922.1| hypothetical protein V12B01_09906 [Vibrio splendidus 12B01] Length = 153 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIAVEN E L T + + + K + EL++ D+ Sbjct: 4 ELDLQIAVEN-----EQGLPT------EQDIQLWLDKTIPQFQENAELTVRIVDTEESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEVPPGMELDLLGDLIICRQVVEKEAEEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY ++ Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQTMGFEDPYILE 152 >gi|145629144|ref|ZP_01784943.1| hypothetical protein CGSHi22121_10090 [Haemophilus influenzae 22.1-21] gi|145633443|ref|ZP_01789173.1| hypothetical protein CGSHi3655_04405 [Haemophilus influenzae 3655] gi|145639708|ref|ZP_01795311.1| hypothetical protein CGSHiII_09331 [Haemophilus influenzae PittII] gi|148825715|ref|YP_001290468.1| putative metalloprotease [Haemophilus influenzae PittEE] gi|166229102|sp|A5UBD4|RRMF_HAEIE RecName: Full=Probable rRNA maturation factor gi|144978647|gb|EDJ88370.1| hypothetical protein CGSHi22121_10090 [Haemophilus influenzae 22.1-21] gi|144986006|gb|EDJ92608.1| hypothetical protein CGSHi3655_04405 [Haemophilus influenzae 3655] gi|145271265|gb|EDK11179.1| hypothetical protein CGSHiII_09331 [Haemophilus influenzae PittII] gi|148715875|gb|ABQ98085.1| hypothetical protein CGSHiEE_03300 [Haemophilus influenzae PittEE] gi|309750677|gb|ADO80661.1| Conserved hypothetical protein [Haemophilus influenzae R2866] Length = 154 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN E + + I N VE+++ D L Sbjct: 6 VDLQIATENIEGLP-------TEEQIVQWATAAIQPEG----NEVEMTVRIVDEAESHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAAEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 113 VHGGLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 >gi|326796265|ref|YP_004314085.1| metalloprotease ybeY [Marinomonas mediterranea MMB-1] gi|326547029|gb|ADZ92249.1| metalloprotease ybeY [Marinomonas mediterranea MMB-1] Length = 155 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 14/160 (8%) Query: 10 RLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA E N E K + E+++ D + Sbjct: 5 DLDLQIATEENDGLPSHKEFEFWAESALPK-----------DHDTCYEMTIRLVDEEESQ 53 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN EYRG +KPTNVLSFP F DG +LGD+V+ +++E EA K+ +H H Sbjct: 54 TLNNEYRGKNKPTNVLSFP--FEVPDGVELPLLGDLVICRQVVEREARDQKKDLNHHWCH 111 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +++HG LHL GYDH+ D +A ME LE IL L I DPY Sbjct: 112 MVVHGILHLRGYDHIKDDEAEEMEALETQILATLNIPDPY 151 >gi|260773263|ref|ZP_05882179.1| predicted metal-dependent hydrolase [Vibrio metschnikovii CIP 69.14] gi|260612402|gb|EEX37605.1| predicted metal-dependent hydrolase [Vibrio metschnikovii CIP 69.14] Length = 154 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIAVE DE L + + + S ++ E+++ D Sbjct: 4 ELDLQIAVE-----DEQGLPSFDDFLI------WFSAAVTPFQSQAEVTIRIVDQAESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + +LGD+V+ +++E EA K H H+ Sbjct: 53 LNLNYRGKDKPTNVLSFP--FEAPAEIELDLLGDLVICRQVVEQEALEQEKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH+DD++A ME LE I++++G +DPY + Sbjct: 111 VVHGTLHLLGYDHIDDQEADEMEALETEIMQNMGFDDPYLAE 152 >gi|238786073|ref|ZP_04630031.1| metalloprotease [Yersinia bercovieri ATCC 43970] gi|238713012|gb|EEQ05066.1| metalloprotease [Yersinia bercovieri ATCC 43970] Length = 154 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA N+ E + E V + + + E+++ D Sbjct: 3 LDLQIACANSQGLPTEADFQQWLEAVLPQ------------FQEVSEVTIRLVDEAESHQ 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DK TNVLSFP F + +LGD+++ +++E EA K H H+ Sbjct: 51 LNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQEAVEQEKALFAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 109 VVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 147 >gi|254503442|ref|ZP_05115593.1| conserved hypothetical protein TIGR00043, putative [Labrenzia alexandrii DFL-11] gi|222439513|gb|EEE46192.1| conserved hypothetical protein TIGR00043, putative [Labrenzia alexandrii DFL-11] Length = 173 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 89/157 (56%), Gaps = 5/157 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + IAVE W DE L L + A A+ + E+SL+FT+ I+ LN Sbjct: 13 IDIAVEAGDWPDETALIKLAQTAIAAALKGADLEVL----EKAEVSLLFTNDEGIQKLNH 68 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R DKPTNVLSFP D +LGDIV AYE + EA LG EF NHL HL +H Sbjct: 69 QWRDKDKPTNVLSFPGN-DPQDDVYGPLLGDIVFAYETVAKEAEELGIEFNNHLTHLTVH 127 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 G LHL YDH + +A +ME LE +IL LGI+DPY Sbjct: 128 GLLHLFDYDHQEKDEAELMESLETAILAGLGIDDPYA 164 >gi|91228824|ref|ZP_01262731.1| hypothetical protein V12G01_00175 [Vibrio alginolyticus 12G01] gi|269965465|ref|ZP_06179584.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91187629|gb|EAS73954.1| hypothetical protein V12G01_00175 [Vibrio alginolyticus 12G01] gi|269829944|gb|EEZ84174.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 154 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + + + K + + E+++ D T Sbjct: 4 ELDLQLAVEN-----EEGLPSQQDFQL------WLDKTIPLFQPQAEVTIRIVDEQESHT 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHEYRGKDKPTNVLSFP--FEAPPGMEIDLLGDLIICRQVVEKEAVEQSKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAE 152 >gi|86148577|ref|ZP_01066862.1| hypothetical protein MED222_02087 [Vibrio sp. MED222] gi|85833643|gb|EAQ51816.1| hypothetical protein MED222_02087 [Vibrio sp. MED222] Length = 153 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L T + + + K + EL++ D+ Sbjct: 4 ELDLQLAVEN-----EQGLPT------EQDIQLWLDKTIPQFQESAELTVRIVDTQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEAPPGVELDLLGDLIICRQVVEKEAEEQSKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY ++ Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQTMGFEDPYILE 152 >gi|258544939|ref|ZP_05705173.1| metalloprotease [Cardiobacterium hominis ATCC 15826] gi|258519859|gb|EEV88718.1| metalloprotease [Cardiobacterium hominis ATCC 15826] Length = 161 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 6/159 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I + G++ + E + + ++ E +EL++ D+ ++ L Sbjct: 1 MSLTIDYQTEELGNDERFPS--EKRLQRWLET--ARATLAIEEALELTIRLVDNDEMQEL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYRG D PTNVLSFP + + +LGD+V+A ++ EA K E H H++ Sbjct: 57 NREYRGKDYPTNVLSFPCDWDLPE--EPRLLGDVVIAAAVVNREAKEQKKTMEAHWAHIV 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 IHGFLHLLGYDH++D DA ME ER+IL LG DPY Sbjct: 115 IHGFLHLLGYDHIEDADAEKMENTERNILAQLGYADPYA 153 >gi|117617448|ref|YP_857734.1| hypothetical protein AHA_3243 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|145558811|sp|A0KN83|RRMF_AERHH RecName: Full=Probable rRNA maturation factor gi|117558855|gb|ABK35803.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 154 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 84/162 (51%), Gaps = 15/162 (9%) Query: 11 LDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E L+ + + E+++ D Sbjct: 5 LDLQLASASTDGLPSEAQLQGWLDGTI------------LGFQQEAEVTVRIVDEAESNE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA GK H H+ Sbjct: 53 LNLTYRGKDKPTNVLSFP--FEAPPGLELPLLGDLVICRQVVEREAAEQGKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LER I+++LG DPY D Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMETLERDIMQELGFADPYLND 152 >gi|254427071|ref|ZP_05040778.1| conserved hypothetical protein TIGR00043, putative [Alcanivorax sp. DG881] gi|196193240|gb|EDX88199.1| conserved hypothetical protein TIGR00043, putative [Alcanivorax sp. DG881] Length = 175 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 87/168 (51%), Gaps = 13/168 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + + P +D+Q A + DE HL CE V A++ G +++L Sbjct: 1 MNGIPTPTVDIQWASDAPDAPDEPHL---CEWVRHAAIAAGGVVG--------DITLRIV 49 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D I TLN +YR D TNVLSFP +G +LGDI++ ++ EA+ K Sbjct: 50 DEDEIRTLNRDYRDKDATTNVLSFPFDMPEGLPEGAVEPLLGDIIICDAVVCREASEQHK 109 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + H H++ HG LHLLGYDH+DD DA VME LE L +LG DPY Sbjct: 110 PLDAHWAHMVTHGVLHLLGYDHIDDDDALVMETLEIRALGELGFPDPY 157 >gi|153840647|ref|ZP_01993314.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|260900743|ref|ZP_05909138.1| putative metalloprotease [Vibrio parahaemolyticus AQ4037] gi|149745688|gb|EDM56819.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|308108997|gb|EFO46537.1| putative metalloprotease [Vibrio parahaemolyticus AQ4037] Length = 154 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + + + K + + E+++ D Sbjct: 4 ELDLQLAVEN-----EEGLPSQQDFQL------WLDKTIPLFQPQAEVTIRIVDEKESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHEYRGKDKPTNVLSFP--FEAPPGMEIDLLGDLIICRQVVEKEAIEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAE 152 >gi|33152458|ref|NP_873811.1| putative metalloprotease [Haemophilus ducreyi 35000HP] gi|46577397|sp|Q7VLN5|RRMF_HAEDU RecName: Full=Probable rRNA maturation factor gi|33148681|gb|AAP96200.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 158 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 10/164 (6%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDSHRI 67 P +DLQIA EN+ F+ V + ++ + + EL++ D Sbjct: 3 PIIDLQIASENSQGLPSAQ-------QFSDWVKHALTYEAQTSNIPLTELTIRIVDEAES 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YRG DKPTNVLSFP F +G +LGD+++ +I+E EA + H Sbjct: 56 HHLNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLIICRQIVEKEALEQKISLDAHWA 113 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL IHG LHLLGYDH+D+ +A MEGLE I++ LG DPY + Sbjct: 114 HLTIHGTLHLLGYDHIDEHEAEQMEGLESDIMQQLGFQDPYLAE 157 >gi|167625136|ref|YP_001675430.1| putative metalloprotease [Shewanella halifaxensis HAW-EB4] gi|189039845|sp|B0TR40|RRMF_SHEHH RecName: Full=Probable rRNA maturation factor gi|167355158|gb|ABZ77771.1| protein of unknown function UPF0054 [Shewanella halifaxensis HAW-EB4] Length = 156 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 83/160 (51%), Gaps = 14/160 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIAVE + L + +S EL++ D + Sbjct: 9 DLDLQIAVEGFELPSQAELELWVKTALRDTMSE------------AELTIRIVDVEESQE 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++ EA K H H+ Sbjct: 57 LNSTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLVICAAVVKQEAMDQNKPLIAHWAHM 114 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HG LHLLGYDH+DD +A ME LE ++E LG +PY+ Sbjct: 115 VVHGCLHLLGYDHIDDSEAEEMESLETHLIESLGYINPYK 154 >gi|123443202|ref|YP_001007176.1| putative metalloprotease [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160872|ref|YP_004297449.1| putative metalloprotease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|145572776|sp|A1JQ74|RRMF_YERE8 RecName: Full=Probable rRNA maturation factor gi|122090163|emb|CAL13026.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604775|emb|CBY26273.1| metal-dependent hydrolase [Yersinia enterocolitica subsp. palearctica Y11] gi|325665102|gb|ADZ41746.1| putative metalloprotease [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863404|emb|CBX73526.1| putative metalloprotease YE2987 [Yersinia enterocolitica W22703] Length = 157 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ E + E V + + + E+++ D Sbjct: 1 MSQVILDLQIACADSQGLPTEADFQHWLEAVLPQ------------FQEVSEVTIRVVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + +LGD+++ +++E EA K Sbjct: 49 AESHELNLTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQEAVEQEKALLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 107 HWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 150 >gi|49473879|ref|YP_031921.1| hypothetical protein BQ02120 [Bartonella quintana str. Toulouse] gi|59799034|sp|Q6G0N3|RRMF_BARQU RecName: Full=Probable rRNA maturation factor gi|49239382|emb|CAF25715.1| hypothetical protein BQ02120 [Bartonella quintana str. Toulouse] Length = 158 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 5/160 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I VE+A W +E L + E +++L + + E+SL+FTD + Sbjct: 1 MITIDITVESARWNNEKMLYDITEKALKTTMNHLSLENV-----VSEISLLFTDDKHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +K TNVLSFP + LMLGDI++A E + +EA GK F++HL H+ Sbjct: 56 INAQWRNKNKSTNVLSFPALPLKAGDPPGLMLGDIIIAQETVVLEAKKEGKSFQDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 I+HG LHLLGY+H + +AC ME LER IL L INDPY Sbjct: 116 IVHGILHLLGYNHETNDEACQMEELEREILLKLSINDPYA 155 >gi|170728027|ref|YP_001762053.1| putative metalloprotease [Shewanella woodyi ATCC 51908] gi|238688644|sp|B1KDV6|RRMF_SHEWM RecName: Full=Probable rRNA maturation factor gi|169813374|gb|ACA87958.1| protein of unknown function UPF0054 [Shewanella woodyi ATCC 51908] Length = 158 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA +N + ++ EL++ D+ + L Sbjct: 12 LDLQIATDNKQLPTQQDFELWVRTALRNTMTE------------AELTVRVVDAEESQAL 59 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+++ ++E EA K + H H++ Sbjct: 60 NSTYRGKDKPTNVLSFP--FEAPAEIELPLLGDLIICASVVEHEAIQQNKPLQAHWAHMV 117 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D +A ME +E ++E LG N+PY+ Sbjct: 118 VHGCLHLLGYDHINDIEAEEMESIETQLIESLGFNNPYK 156 >gi|262394982|ref|YP_003286836.1| putative metal-dependent hydrolase [Vibrio sp. Ex25] gi|262338576|gb|ACY52371.1| predicted metal-dependent hydrolase [Vibrio sp. Ex25] Length = 154 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + + + K + + E+++ D T Sbjct: 4 ELDLQLAVEN-----EEGLPSQQDFQL------WLDKTIPLFQPQAEVTIRIVDEQESHT 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHEYRGKDKPTNVLSFP--FEAPPGMEIDLLGDLIICRQVVEKEAIEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAE 152 >gi|28897505|ref|NP_797110.1| putative metalloprotease [Vibrio parahaemolyticus RIMD 2210633] gi|260363860|ref|ZP_05776612.1| putative metalloprotease [Vibrio parahaemolyticus K5030] gi|260878353|ref|ZP_05890708.1| putative metalloprotease [Vibrio parahaemolyticus AN-5034] gi|260898987|ref|ZP_05907428.1| putative metalloprotease [Vibrio parahaemolyticus Peru-466] gi|31077048|sp|Q87RP6|RRMF_VIBPA RecName: Full=Probable rRNA maturation factor gi|28805717|dbj|BAC58994.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087470|gb|EFO37165.1| putative metalloprotease [Vibrio parahaemolyticus Peru-466] gi|308090264|gb|EFO39959.1| putative metalloprotease [Vibrio parahaemolyticus AN-5034] gi|308114631|gb|EFO52171.1| putative metalloprotease [Vibrio parahaemolyticus K5030] gi|328472486|gb|EGF43349.1| metal-binding heat shock protein [Vibrio parahaemolyticus 10329] Length = 154 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVEN E L + + + K + + E+++ D Sbjct: 4 ELDLQLAVEN-----EEGLPSQQDFQL------WLDKTIPLFQPQAEVTIRIVDEKESHA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNHEYRGKDKPTNVLSFP--FEAPPGMEIDLLGDLIICRQVVEKEAIEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAE 152 >gi|88798162|ref|ZP_01113748.1| hypothetical protein MED297_12927 [Reinekea sp. MED297] gi|88778938|gb|EAR10127.1| hypothetical protein MED297_12927 [Reinekea sp. MED297] Length = 163 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 14/168 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + LDLQIA + E R +S + VE+S+ + Sbjct: 1 MTELTLDLQIATDAENIPAEASFRQW------------VSAALSGYDREVEMSIRVVSAE 48 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + LN YRG DKPTNVLSFP D +LGD+V+ ++E EA K Sbjct: 49 ESQDLNATYRGKDKPTNVLSFPFEAPPGVADAGIDRLLGDLVICAPVVEEEAQAQRKHLS 108 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H H+++HG LHLLGYDH++D +A ME ER+IL L I DPY+ + Sbjct: 109 HHWAHMVVHGTLHLLGYDHIEDDEAEQMEQAERTILAALSIPDPYQGE 156 >gi|325578691|ref|ZP_08148767.1| metal-dependent hydrolase [Haemophilus parainfluenzae ATCC 33392] gi|325159730|gb|EGC71861.1| metal-dependent hydrolase [Haemophilus parainfluenzae ATCC 33392] Length = 154 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 81/159 (50%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQ+A EN E + + + VE+++ D Sbjct: 6 IDLQLACENTEGLPSEEQILQWATAAVQ------------PESDNVEMTVRIVDKAESHD 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H+ Sbjct: 54 LNLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAIEQEKPLMAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGYDH++D +A ME LE I++ LG DPY Sbjct: 112 IVHGSLHLLGYDHIEDDEAEEMESLETEIMQGLGFADPY 150 >gi|301155988|emb|CBW15458.1| conserved protein [Haemophilus parainfluenzae T3T1] Length = 154 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 81/159 (50%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQ+A EN E + + + VE+++ D Sbjct: 6 IDLQLASENTEGLPSEAQILQWATAAVQ------------PESDNVEMTVRIVDEAESHD 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H+ Sbjct: 54 LNLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAIEQEKPLMAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGYDH+DD +A ME LE I++ LG DPY Sbjct: 112 IVHGSLHLLGYDHIDDDEAEEMESLETEIMQGLGFADPY 150 >gi|285018848|ref|YP_003376559.1| hypothetical protein XALc_2084 [Xanthomonas albilineans GPE PC73] gi|283474066|emb|CBA16567.1| hypothetical protein XALc_2084 [Xanthomonas albilineans] Length = 161 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 72/137 (52%), Gaps = 2/137 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SD 94 A + ++ + +L++ D LN YRG D TNVLSFP Sbjct: 24 ATSFRKWVAVALKGRIREADLAIRLVDQREGRALNQHYRGKDYATNVLSFPAELPDGLPK 83 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME L Sbjct: 84 GIRLPLLGDLVICAPVVAREAAEQGKPLNAHYAHLTVHGVLHLLGWDHEDDKEAEAMEQL 143 Query: 155 ERSILEDLGINDPYEVD 171 ER IL +LG++DPY + Sbjct: 144 ERQILGELGLSDPYAGE 160 >gi|292487619|ref|YP_003530491.1| putative metalloprotease ybeY [Erwinia amylovora CFBP1430] gi|292898857|ref|YP_003538226.1| hypothetical protein EAM_1139 [Erwinia amylovora ATCC 49946] gi|291198705|emb|CBJ45814.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291553038|emb|CBA20083.1| putative metalloprotease ybeY [Erwinia amylovora CFBP1430] gi|312171726|emb|CBX79984.1| putative metalloprotease ybeY [Erwinia amylovora ATCC BAA-2158] Length = 155 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + LDLQ+A E+ E + E V + ++ E+++ D Sbjct: 1 MTQVILDLQLACESQQGLPTEADFQRWLEAVLPQ------------FQSESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG +KPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHHLNHTYRGKEKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEHEAAEQEKALEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H++IHG LHLLGYDH+ D +A ME LE I+ LG DPY Sbjct: 107 HWAHMVIHGSLHLLGYDHIVDDEAEEMESLETEIMLALGYPDPY 150 >gi|119477444|ref|ZP_01617635.1| hypothetical protein GP2143_00682 [marine gamma proteobacterium HTCC2143] gi|119449370|gb|EAW30609.1| hypothetical protein GP2143_00682 [marine gamma proteobacterium HTCC2143] Length = 166 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 81/166 (48%), Gaps = 14/166 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +DLQIA E+ + A + VEL++ D Sbjct: 1 MTTVAVDLQIASEDDDHPPPASFEQWVQAAVA------------SHQENVELTVRIVDEE 48 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + LN YRGI+KPTNVLSFP D +LGD+++ ++ EA K H Sbjct: 49 ESQYLNDRYRGINKPTNVLSFPADL--PDHIDIPLLGDLIICAPVVAQEAKAQNKPCLCH 106 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH+DD DA ME LE IL L I +PY ++ Sbjct: 107 WAHMVVHGTLHLLGYDHIDDHDAEEMEALEVKILASLEIANPYSIN 152 >gi|218889735|ref|YP_002438599.1| putative metalloprotease [Pseudomonas aeruginosa LESB58] gi|226696066|sp|B7V9D4|RRMF_PSEA8 RecName: Full=Probable rRNA maturation factor gi|218769958|emb|CAW25720.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 160 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 77/162 (47%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E R CE+ + EL++ D Sbjct: 4 ELDLQVASAAPDLPSEAQFRAWCELALRQR-------------PESELTIRLVDEAEGLE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVLSF A + +LGD+V+ ++ EA K + H HL Sbjct: 51 LNSTYRHKDYATNVLSF-LADVPDELLDIPLLGDLVICAPVVAREALEQRKPLQAHWAHL 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 110 VIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|304413111|ref|ZP_07394584.1| hypothetical protein REG_0098 [Candidatus Regiella insecticola LSR1] gi|304283954|gb|EFL92347.1| hypothetical protein REG_0098 [Candidatus Regiella insecticola LSR1] Length = 177 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 80/159 (50%), Gaps = 13/159 (8%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQI N E + + E + K F + E+++ D Sbjct: 29 LDLQIVCTHNKKLPTEANFNSWLEAIQVK----------FQSLSEAEMTIRLVDEAESRQ 78 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LNF YR DKPTNVLSFP+ + LGD+V+ +++E EA K H H+ Sbjct: 79 LNFIYRDKDKPTNVLSFPSTLPEE--INLPWLGDLVICRQVVEREAVEQNKTLLAHWAHM 136 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH+ D++A ME LE IL+ LG D Y Sbjct: 137 VVHGTLHLLGYDHITDEEAQEMESLETDILQTLGYPDAY 175 >gi|70732739|ref|YP_262502.1| putative metalloprotease [Pseudomonas fluorescens Pf-5] gi|123652712|sp|Q4K5I1|RRMF_PSEF5 RecName: Full=Probable rRNA maturation factor gi|68347038|gb|AAY94644.1| conserved hypothetical protein TIGR00043 [Pseudomonas fluorescens Pf-5] Length = 152 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ A + DE R CE+ + ++ EL++ D Sbjct: 3 ELDLQRASQQPAPSDE-QFRQWCELALRQRTAD------------SELTIRLVDEAEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D TNVLSFP A + +LGD+V+ ++E EA GKE + H HL Sbjct: 50 LNHTWRHKDYATNVLSFP-ADVPDELLDIPLLGDLVICIAVVEREAAEQGKELQAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD +A ME LER++L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDDEAEEMEALERTLLAELGHPDPYADD 150 >gi|94501474|ref|ZP_01307993.1| hypothetical protein RED65_05912 [Oceanobacter sp. RED65] gi|94426439|gb|EAT11428.1| hypothetical protein RED65_05912 [Oceanobacter sp. RED65] Length = 154 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 14/161 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+QIA+E L++ A ELS+ D+ ++ Sbjct: 3 DVDVQIAIEGDNLPTPTQLQSWVTAALA------------SLRPEAELSIRLVDNSESQS 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN EYRG DKPTNVLSFP + + ++GD+V+ + ++ EA K E+H Sbjct: 51 LNHEYRGKDKPTNVLSFPFEIPPELAEIENFTLIGDLVICHPVVCQEAAEQKKPLEHHYA 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H++IHG LHLLGYDH+++ +A ME LE IL L I DPY Sbjct: 111 HMVIHGCLHLLGYDHINEDEAEEMERLETDILATLNIPDPY 151 >gi|293391337|ref|ZP_06635671.1| putative metalloprotease in flp 5' region [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951871|gb|EFE01990.1| putative metalloprotease in flp 5' region [Aggregatibacter actinomycetemcomitans D7S-1] Length = 154 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 82/158 (51%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA DE L T A + + + +E+++ D L Sbjct: 6 IDLQIAS-----ADESGLPT------AAQIEQWATAAVQPQSGEIEMTVRIVDETESHAL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NLNYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAQEQEKPLMAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMIGLGFVDPY 150 >gi|153835655|ref|ZP_01988322.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|156973537|ref|YP_001444444.1| putative metalloprotease [Vibrio harveyi ATCC BAA-1116] gi|269961559|ref|ZP_06175921.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|166228922|sp|A7N1G7|RRMF_VIBHB RecName: Full=Probable rRNA maturation factor gi|148867723|gb|EDL66985.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|156525131|gb|ABU70217.1| hypothetical protein VIBHAR_01228 [Vibrio harveyi ATCC BAA-1116] gi|269833600|gb|EEZ87697.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 154 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 15/163 (9%) Query: 10 RLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+AVEN E + + + + EL++ D Sbjct: 4 ELDLQLAVENEEGLPSEQDFQLWLDKTIP------------LFQPQAELTIRIVDEQESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP F G +LGD+++ +++E EA K H H Sbjct: 52 ELNHEYRGKDKPTNVLSFP--FEVPPGMEMDLLGDLIICRQVVEKEAVEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAE 152 >gi|149377494|ref|ZP_01895235.1| predicted metal-dependent hydrolase [Marinobacter algicola DG893] gi|149358186|gb|EDM46667.1| predicted metal-dependent hydrolase [Marinobacter algicola DG893] Length = 157 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ +DLQ AVE +++ + + EN E+++ S Sbjct: 1 MSELTVDLQRAVEAPGVPEDVEFERWARAAW-------------LGENPSEVTIRIVASD 47 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG PTNVLSFP F + G + + GD+++ ++E EA K + H Sbjct: 48 ESADLNSQYRGKSGPTNVLSFP--FEAPAGITVPLAGDLIICAPVVEKEATEQQKTLKEH 105 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHL GYDH++D DA VME LE +L LG ++PYE + Sbjct: 106 WAHMVVHGMLHLQGYDHIEDNDAEVMEALEIRLLGQLGFSNPYETE 151 >gi|288942384|ref|YP_003444624.1| hypothetical protein Alvin_2683 [Allochromatium vinosum DSM 180] gi|288897756|gb|ADC63592.1| protein of unknown function UPF0054 [Allochromatium vinosum DSM 180] Length = 178 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E+A A+ + EL++ D + Sbjct: 6 ELDLQVATEDADHPLPPRFERWVRAALAQV-------DPPFQRARAELTIRLVDPDESQA 58 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN +YRG DKPTNVLSFP D +LGD+V+ E++ EA GK E H Sbjct: 59 LNLQYRGRDKPTNVLSFPFEAPPGLDADDPIHDLLGDLVICTEVVRREALEQGKTPEAHW 118 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H+++HG LHLL YDHV D +A VME LE +IL LG PYE Sbjct: 119 AHMVVHGVLHLLDYDHVTDAEAAVMETLETAILGGLGFPPPYED 162 >gi|83648012|ref|YP_436447.1| metal-dependent hydrolase [Hahella chejuensis KCTC 2396] gi|123531265|sp|Q2SBF2|RRMF_HAHCH RecName: Full=Probable rRNA maturation factor gi|83636055|gb|ABC32022.1| predicted metal-dependent hydrolase [Hahella chejuensis KCTC 2396] Length = 156 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 15/162 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+QIA E A E L + + E+++ D+ Sbjct: 4 DVDIQIASEEADLPSEEQLILWAQAALR-------------ETGDREVTIRIVDAEESRE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G + +LGD+V+ ++ EA K H H+ Sbjct: 51 LNAQYRGKDKPTNVLSFP--FENPPGLTLPLLGDLVICAPVVFNEAVEQQKTAAAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHL GYDH+ D++A VME LE ++ LG PY + Sbjct: 109 VIHGMLHLQGYDHIIDEEAEVMESLETELVTSLGFPPPYATN 150 >gi|212636646|ref|YP_002313171.1| putative metalloprotease [Shewanella piezotolerans WP3] gi|226706243|sp|B8CSF8|RRMF_SHEPW RecName: Full=Probable rRNA maturation factor gi|212558130|gb|ACJ30584.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 156 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 14/160 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE + + ++ + EL++ D + Sbjct: 9 ELDLQVAVEGVELPSVQEMELWVKTALRDSM------------DQAELTIRIVDVAESQM 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++ EA K H H+ Sbjct: 57 LNSTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLVVCAAVVKQEAIDQNKPLNAHWAHM 114 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HG LHLLGYDH++D +A ME LE ++E LG N+PY+ Sbjct: 115 VVHGCLHLLGYDHIEDIEAEEMESLETQLIESLGYNNPYQ 154 >gi|152979599|ref|YP_001345228.1| putative metalloprotease [Actinobacillus succinogenes 130Z] gi|171704389|sp|A6VQP6|RRMF_ACTSZ RecName: Full=Probable rRNA maturation factor gi|150841322|gb|ABR75293.1| protein of unknown function UPF0054 [Actinobacillus succinogenes 130Z] Length = 156 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQI E D+ +L T + F + + + E+++ D L Sbjct: 7 IDLQIVSE-----DQTNLPTPEQ--FTQWATAAVRAEALEP----EITIRIVDEAESHDL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D+PTNVLSFP F + +LGD+V+ +++E EA GK H H++ Sbjct: 56 NLTYRGKDRPTNVLSFP--FECPEEVELPLLGDLVICRQVVEREAEQQGKPLPAHWAHMV 113 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I+ +LG DPY D Sbjct: 114 VHGCLHLLGYDHIEDDEAVEMESLETQIMTELGFEDPYSYD 154 >gi|261867460|ref|YP_003255382.1| putative metalloprotease [Aggregatibacter actinomycetemcomitans D11S-1] gi|46577549|sp|Q9JRS8|RRMF_AGGAC RecName: Full=Probable rRNA maturation factor gi|8096199|dbj|BAA96100.1| unnamed protein product [Actinobacillus actinomycetemcomitans] gi|261412792|gb|ACX82163.1| putative metalloprotease in flp 5' region [Aggregatibacter actinomycetemcomitans D11S-1] Length = 154 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 82/158 (51%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA DE L T A + + + VE+++ D L Sbjct: 6 IDLQIAS-----ADESGLPT------AAQIEQWATAAVQPQSGEVEMTVRIVDETESHAL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 NF YRG D PTNVLSFP F D +LGD+V+ +++E EA K H H++ Sbjct: 55 NFNYRGKDHPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREAQEQEKPLIAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMESLETQIMMGLGFVDPY 150 >gi|299133382|ref|ZP_07026577.1| protein of unknown function UPF0054 [Afipia sp. 1NLS2] gi|298593519|gb|EFI53719.1| protein of unknown function UPF0054 [Afipia sp. 1NLS2] Length = 164 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 90/161 (55%), Gaps = 7/161 (4%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P D+ IA W + + + A A S + + E++++ TD RI Sbjct: 4 PPTADVLIA--ADCWQAQADAEAVIQRAIAAAASFV-----ELPAEDTEVAVMLTDDARI 56 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN E+R DK TNVLSFP A LMLGDI +AYE EA GK F+NHL Sbjct: 57 RELNKEWRDQDKATNVLSFPAAQPPGATPQPLMLGDIAIAYETTRFEAETEGKPFQNHLS 116 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL IHGFLHLLGYDH+DD +A MEGLER IL LGI DPY Sbjct: 117 HLAIHGFLHLLGYDHLDDDEAEEMEGLERDILAKLGIADPY 157 >gi|254521495|ref|ZP_05133550.1| conserved hypothetical protein TIGR00043 [Stenotrophomonas sp. SKA14] gi|219719086|gb|EED37611.1| conserved hypothetical protein TIGR00043 [Stenotrophomonas sp. SKA14] Length = 156 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 85/163 (52%), Gaps = 10/163 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L +AV AL + V F K V+ + + +L++ D+ ++L Sbjct: 1 MRLDVAVNYALPRTGLP----AAVSFRKWVAAALK----GRIREADLAIRVVDAKEGQSL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N YRG D TNVLSFP G +LGD+V+ ++ EA+ GK H H Sbjct: 53 NRHYRGKDYATNVLSFPAELPEGLPKGVKFPLLGDLVICAPVVAREADEQGKALNAHYAH 112 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L +HG LHLLG+DH DDK+A ME LER IL +LGI DPY + Sbjct: 113 LTVHGVLHLLGWDHEDDKEAEAMEQLEREILAELGIADPYAGE 155 >gi|49080770|gb|AAT50056.1| PA3982 [synthetic construct] Length = 161 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 78/162 (48%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E R CE+ + EL++ D Sbjct: 4 ELDLQVASAAPDLPSEAQFRAWCELALRQR-------------PESELTIRLVDEAEGLE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TN+LSFP A + +LGD+V+ ++ EA K + H HL Sbjct: 51 LNSTYRHKDYATNLLSFP-ADVPDELLDIPLLGDLVICAPVVAREALEQRKPLQAHWAHL 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD +A ME LER +L +LG DPY D Sbjct: 110 VIHGCLHLLGYDHIDDAEAEEMETLERELLAELGHPDPYACD 151 >gi|260767224|ref|ZP_05876165.1| predicted metal-dependent hydrolase [Vibrio furnissii CIP 102972] gi|260617732|gb|EEX42910.1| predicted metal-dependent hydrolase [Vibrio furnissii CIP 102972] gi|315180849|gb|ADT87763.1| hypothetical protein vfu_A02642 [Vibrio furnissii NCTC 11218] Length = 154 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 83/162 (51%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E L T + + + + E+++ D Sbjct: 4 ELDLQLA-----AASEDGLPT------REQFATWLQTAIVPFQPQAEVTIRIVDEPESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DK TNVLSFP F + G +LGD+V+ +++E EA K H H+ Sbjct: 53 LNLEYRGKDKSTNVLSFP--FEAPPGIEMDLLGDLVICRQVVEREAVEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMQTMGFEDPYLAE 152 >gi|157962956|ref|YP_001502990.1| putative metalloprotease [Shewanella pealeana ATCC 700345] gi|189039823|sp|A8H7B8|RRMF_SHEPA RecName: Full=Probable rRNA maturation factor gi|157847956|gb|ABV88455.1| protein of unknown function UPF0054 [Shewanella pealeana ATCC 700345] Length = 156 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 14/160 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LD+Q+AVE + L + +S EL++ D + Sbjct: 9 DLDVQVAVEGFELPSQAELELWVKTALRDTMSE------------AELTIRIVDVEESQE 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ ++E EA K H H+ Sbjct: 57 LNMTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLVICAAVVEQEAIDQNKPLLAHWAHM 114 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HG LHLLGYDH++D +A ME LE ++E LG +PY+ Sbjct: 115 VVHGCLHLLGYDHIEDVEAEEMESLETQLIESLGYINPYK 154 >gi|319898346|ref|YP_004158439.1| hypothetical protein BARCL_0168 [Bartonella clarridgeiae 73] gi|319402310|emb|CBI75849.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 158 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + +E+A WGDE L + E + +L + E ELSL+FTD + Sbjct: 1 MIAIDMTIESAKWGDEKMLYNITEKALTTTLQHLS-----LNEVRSELSLLFTDDKHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +K TNVLSFP+ + LMLGDI++A E I EA K F++HL H+ Sbjct: 56 INAQWRHQNKSTNVLSFPSFPLKAGQNPGLMLGDIIIAQETIMREAEEEKKSFQDHLTHI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IIHG LHLLGY+H + +A ME LER IL+ L I DPY Sbjct: 116 IIHGILHLLGYNHETNDEANQMEKLEREILQKLSIKDPY 154 >gi|260774883|ref|ZP_05883784.1| predicted metal-dependent hydrolase [Vibrio coralliilyticus ATCC BAA-450] gi|260609138|gb|EEX35296.1| predicted metal-dependent hydrolase [Vibrio coralliilyticus ATCC BAA-450] Length = 156 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+AVE DE L + ++ V ++ + E+++ D Sbjct: 4 ELDLQLAVE-----DEKGLPS------SEDVHLWLTSAVAKFQPQAEVTVRIVDEQESHQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+++ +++E EA+ K H H+ Sbjct: 53 LNHDYRGKDKPTNVLSFP--FEAPPGIEMDLLGDLIICRQVVEQEADQQSKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I+ +G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMESLETEIMLGMGFEDPYIAE 152 >gi|194365130|ref|YP_002027740.1| putative metalloprotease [Stenotrophomonas maltophilia R551-3] gi|238693470|sp|B4SQK2|RRMF_STRM5 RecName: Full=Probable rRNA maturation factor gi|194347934|gb|ACF51057.1| protein of unknown function UPF0054 [Stenotrophomonas maltophilia R551-3] Length = 161 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 10/161 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L +A+ AL + V F K V+ + + +L++ D+ ++LN Sbjct: 8 LDVAISYALPRAGLP----AAVSFRKWVAAALK----GRIREADLAIRVVDAKEGQSLNR 59 Query: 73 EYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 YRG D TNVLSFP G +LGD+V+ ++ EA+ GK H HL Sbjct: 60 HYRGKDYATNVLSFPADVPEGLPKGVKFPLLGDLVICAPVVAREADEQGKALNAHYAHLT 119 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG+DH DDK+A ME LER IL +LGI DPY + Sbjct: 120 VHGVLHLLGWDHEDDKEAEAMEQLEREILAELGIADPYAGE 160 >gi|114319557|ref|YP_741240.1| hypothetical protein Mlg_0396 [Alkalilimnicola ehrlichii MLHE-1] gi|122312505|sp|Q0ABN7|RRMF_ALHEH RecName: Full=Probable rRNA maturation factor gi|114225951|gb|ABI55750.1| protein of unknown function UPF0054 [Alkalilimnicola ehrlichii MLHE-1] Length = 166 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 64/171 (37%), Positives = 85/171 (49%), Gaps = 7/171 (4%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M+ + P LDL++ + E F + VS ++ G L++ Sbjct: 1 MTAAVNDAPALDLEV-----QYVVAWRAGLPPEAAFRRWVSAALAAGGHTGPAA--LAVR 53 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D LN +YRG D PTNVLSFP LGD+V+ ++E EA GK Sbjct: 54 VVDKAEGRRLNHDYRGRDYPTNVLSFPFEAPPGLDEPLPELGDLVICAPVVEREAREQGK 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H HL++HG LHLLGYDH ++A MEGLER IL LGI DPY +D Sbjct: 114 PEADHWAHLVVHGVLHLLGYDHEAAEEAEAMEGLERRILAGLGIADPYRLD 164 >gi|49475036|ref|YP_033077.1| hypothetical protein BH02240 [Bartonella henselae str. Houston-1] gi|59799036|sp|Q6G4V8|RRMF_BARHE RecName: Full=Probable rRNA maturation factor gi|49237841|emb|CAF27036.1| hypothetical protein BH02240 [Bartonella henselae str. Houston-1] Length = 158 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 91/160 (56%), Gaps = 5/160 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I VE+ W DE L + E + +L + + E+SL+FTD + Sbjct: 1 MITIDILVESDGWNDEKMLYNITEKALKTIMHHLSLENV-----VSEISLLFTDDKHMAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++RG +K TNVLSFP MLGDI++A E + +EA K F++HL H+ Sbjct: 56 INAQWRGKNKSTNVLSFPAFPLKVGDSPGPMLGDIIIARETVVLEAENEAKSFQDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 I+HG LHLLGY+H +++A ME LER IL+ L I DPY Sbjct: 116 IVHGILHLLGYNHETNEEASHMEELERKILQKLSIKDPYA 155 >gi|312963221|ref|ZP_07777705.1| metalloprotease [Pseudomonas fluorescens WH6] gi|311282487|gb|EFQ61084.1| metalloprotease [Pseudomonas fluorescens WH6] Length = 152 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 14/163 (8%) Query: 10 RLDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 L+L + +E+ E R C + + ++ EL++ D Sbjct: 1 MLELDLQLESTKPAPSEARFREWCALALRQRTAD------------SELTIRLVDEPEGR 48 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +R D TNVLSFP A + +LGD+V+ ++E EA GK E H H Sbjct: 49 ELNRTWRQKDYATNVLSFP-ADVPDELLDIPLLGDLVICVAVVEREAKEQGKALEAHWAH 107 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L+IHG LHLLGYDH+DD +A ME LER++L +LG DPY D Sbjct: 108 LVIHGCLHLLGYDHIDDDEAEEMEALERTLLAELGHPDPYADD 150 >gi|330445219|ref|ZP_08308871.1| conserved protein involved in translation [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489410|dbj|GAA03368.1| conserved protein involved in translation [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 154 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ A E+ E F + + ++ + E+++ D L Sbjct: 5 LDLQYATESQDGLP-------TEAEFQQWLDAAVTP----FQADAEVTIRLVDEADSHEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYRG D+PTNVLSFP F + G +LGD+++ +++E EA K + H H++ Sbjct: 54 NLEYRGKDRPTNVLSFP--FEAPPGIELELLGDLIICRQVVEKEALEQNKPLKAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D +A MEGLE I++++G DPY Sbjct: 112 VHGSLHLLGYDHIEDDEAEEMEGLETEIMQNMGFVDPY 149 >gi|218658441|ref|ZP_03514371.1| hypothetical protein RetlI_01597 [Rhizobium etli IE4771] Length = 127 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 62/114 (54%), Positives = 80/114 (70%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+SLVFTD I+ +N E+RG DK TNVLSFP MLGDI++A E +E EA Sbjct: 6 EVSLVFTDDASIQDINAEWRGKDKATNVLSFPAFPVKPGKMPGPMLGDIIIARETVEREA 65 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + L K ++HL HL++HGFLHLLGYDH++ +A +MEGLE IL LG++DPYE Sbjct: 66 HELEKSLDDHLTHLLVHGFLHLLGYDHMNSTEAEIMEGLETRILAQLGLSDPYE 119 >gi|325920327|ref|ZP_08182264.1| hypothetical protein TIGR00043 [Xanthomonas gardneri ATCC 19865] gi|325549189|gb|EGD20106.1| hypothetical protein TIGR00043 [Xanthomonas gardneri ATCC 19865] Length = 166 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 87/173 (50%), Gaps = 10/173 (5%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M V + + L +AV AL + V F K V+ + + +L++ Sbjct: 1 MLVFPMTKGPIRLDVAVSYALPRAGLPSA----VSFRKWVAAALK----GRIREADLAVR 52 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVL 118 D +LN YRG D TNVLSFP G +LGD+V+ ++ EA Sbjct: 53 IVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLPKGVKMPLLGDLVICAPVVAREAAEQ 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +H HL +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY + Sbjct: 113 GKSLASHYAHLTVHGTLHLLGWDHADDKEADAMEQLEREILADLGIDDPYAGE 165 >gi|323259260|gb|EGA42903.1| metal-binding heat shock protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 146 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 6/140 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + +I + + E+++ D LN YRG DKPTNVLSFP F Sbjct: 9 DEAQFQRWLDGVIPQ----FQEEAEVTIRLVDEAESHDLNLTYRGKDKPTNVLSFP--FE 62 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + G +LGD+++ +++E EA K E H H+++HG LHLLGYDH+DD +A M Sbjct: 63 APPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHGSLHLLGYDHIDDDEAEEM 122 Query: 152 EGLERSILEDLGINDPYEVD 171 E LE I+ +G DPY + Sbjct: 123 ESLETEIMLAMGYEDPYIAE 142 >gi|88860581|ref|ZP_01135219.1| hypothetical protein PTD2_16192 [Pseudoalteromonas tunicata D2] gi|88817779|gb|EAR27596.1| hypothetical protein PTD2_16192 [Pseudoalteromonas tunicata D2] Length = 152 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + LDLQIA E + + + EL++ D Sbjct: 1 MTELDLQIASEFKDLPSFEQFQLWAHSTLD------------LFKEESELTIRIADEAES 48 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + LN +YRG +KPTNVLSFP F + G ++GD+++ +++ EA K F +H Sbjct: 49 QQLNNDYRGKNKPTNVLSFP--FEAPPGIELPLVGDLIICPQVVYQEALEQEKSFHDHFA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLG+DH++ +DA ME E+ IL LGI+DPY D Sbjct: 107 HMVVHGCLHLLGFDHIEAEDAEEMESNEKEILAKLGISDPYRDD 150 >gi|209883672|ref|YP_002287529.1| putative metalloprotease [Oligotropha carboxidovorans OM5] gi|209871868|gb|ACI91664.1| putative metalloprotease [Oligotropha carboxidovorans OM5] Length = 167 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 73/164 (44%), Positives = 91/164 (55%), Gaps = 10/164 (6%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P D+ IA W E ++ + A A + + + EL+++ TD I Sbjct: 4 PPTADVLIA--ADCWKAEAEAESIVQNAIATAATFVT-----LPAEATELAVMLTDDASI 56 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN E+RG DKPTNVLSFP A + LMLGDI +AYE EA K F + Sbjct: 57 RDLNREWRGQDKPTNVLSFPAAPLPGNTTQDGVPLMLGDIAIAYETTRREAETDAKPFPH 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL HL +HGFLHLLGYDH++D +A VME LER IL LGI DPY Sbjct: 117 HLSHLAVHGFLHLLGYDHIEDSEAEVMEELERRILAKLGIADPY 160 >gi|190573586|ref|YP_001971431.1| putative metalloprotease [Stenotrophomonas maltophilia K279a] gi|229553943|sp|B2FJ87|RRMF_STRMK RecName: Full=Probable rRNA maturation factor gi|190011508|emb|CAQ45126.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 161 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 85/161 (52%), Gaps = 10/161 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L +A+ AL + V F + V+ + + +L++ D+ ++LN Sbjct: 8 LDVAISYALPRAGLP----AAVSFRRWVAAALK----GRIREADLAIRVVDAKEGQSLNR 59 Query: 73 EYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 YRG D TNVLSFP G +LGD+V+ ++ EA+ GK H HL Sbjct: 60 HYRGKDYATNVLSFPAEVPEGLPKGVKFPLLGDLVICAPVVAREADEQGKALNAHYAHLT 119 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG+DH DDK+A ME LER IL +LGI+DPY + Sbjct: 120 VHGVLHLLGWDHEDDKEAEAMEQLEREILAELGIDDPYAGE 160 >gi|126666979|ref|ZP_01737955.1| predicted metal-dependent hydrolase [Marinobacter sp. ELB17] gi|126628695|gb|EAZ99316.1| predicted metal-dependent hydrolase [Marinobacter sp. ELB17] Length = 158 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N LDLQ+ + A E R ++ + + E+++ D Sbjct: 1 MNFVTLDLQLVSDAANIPSEDQFRQWSQLAWQ-------------GDEPTEVTIRIVDES 47 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++ LNF+YRG DKPTNVLSFP F + G L+ GD+V+ I+ EA K+ H Sbjct: 48 EMQALNFQYRGKDKPTNVLSFP--FEAPAGIQILLAGDLVICAPIVAQEAREQYKDTHAH 105 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+IIHG LHL YDH+DD +A MEGLE +L +GI +PY+ Sbjct: 106 WAHMIIHGMLHLQSYDHIDDNEAEEMEGLEIRLLAQIGITNPYD 149 >gi|307545981|ref|YP_003898460.1| hypothetical protein HELO_3391 [Halomonas elongata DSM 2581] gi|307218005|emb|CBV43275.1| K07042 [Halomonas elongata DSM 2581] Length = 171 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 12/162 (7%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P +D Q+A+E + L V ++ E EL++ F D+ Sbjct: 5 PDIDRQVALEVEDLPRQADLEAWVTGVLSR----------HPDETRHELTIRFVDAEESR 54 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YR D+PTNVLSFP F S + +LGD+V+ + ++ EA K +H H Sbjct: 55 HLNRDYRDRDRPTNVLSFP--FESPPTVALPLLGDLVICHPVVVDEAETQHKSLLDHYAH 112 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +++HG LHLLGYDH++D +A VME LER IL +LGI DPY Sbjct: 113 MVVHGTLHLLGYDHIEDDEAEVMEALEREILAELGIADPYAT 154 >gi|51595458|ref|YP_069649.1| metalloprotease [Yersinia pseudotuberculosis IP 32953] gi|153949147|ref|YP_001401879.1| metalloprotease [Yersinia pseudotuberculosis IP 31758] gi|186894489|ref|YP_001871601.1| putative metalloprotease [Yersinia pseudotuberculosis PB1/+] gi|59799101|sp|Q66DD5|RRMF_YERPS RecName: Full=Probable rRNA maturation factor gi|166988546|sp|A7FKV1|RRMF_YERP3 RecName: Full=Probable rRNA maturation factor gi|238691434|sp|B2K894|RRMF_YERPB RecName: Full=Probable rRNA maturation factor gi|51588740|emb|CAH20351.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|152960642|gb|ABS48103.1| conserved hypothetical protein TIGR00043 [Yersinia pseudotuberculosis IP 31758] gi|186697515|gb|ACC88144.1| protein of unknown function UPF0054 [Yersinia pseudotuberculosis PB1/+] Length = 157 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ E + E V + + + E+++ D Sbjct: 1 MSQVILDLQIACADSQGLPTEGDFQRWLEAVLP------------LFQPVSEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DK TNVLSFP F + +LGD+++ +++E EA K Sbjct: 49 AESHDLNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVVEKEAIEQEKALLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH+DD +A ME +E I+ LG DPY Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMELIETEIMHGLGYPDPY 150 >gi|254448604|ref|ZP_05062063.1| hypothetical protein GP5015_1989 [gamma proteobacterium HTCC5015] gi|198261793|gb|EDY86079.1| hypothetical protein GP5015_1989 [gamma proteobacterium HTCC5015] Length = 155 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 66/161 (40%), Positives = 87/161 (54%), Gaps = 10/161 (6%) Query: 10 RLDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 +LD+ +V+ A W E +R A A++ S G V +EL L + Sbjct: 4 QLDIDPSVQGARWLPSEADVREWTSATLA-AITRSFSAGVEVSFKWLELEL-------SQ 55 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +LN +YRG D PTNVLSFP DG +LGDI + ++E EA GK H H Sbjct: 56 SLNCDYRGKDSPTNVLSFPMQMPPIDG-ELELLGDIAICPAVVEREAGEQGKPLRAHWAH 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +++HG LHL GYDH++D +A ME LER IL LGI DPY Sbjct: 115 MVVHGMLHLCGYDHIEDTEALEMEALERDILASLGIEDPYR 155 >gi|21231768|ref|NP_637685.1| putative metalloprotease [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768106|ref|YP_242868.1| putative metalloprotease [Xanthomonas campestris pv. campestris str. 8004] gi|188991236|ref|YP_001903246.1| putative metalloprotease [Xanthomonas campestris pv. campestris str. B100] gi|26006927|sp|Q8P8B2|RRMF_XANCP RecName: Full=Probable rRNA maturation factor gi|81305917|sp|Q4UVS5|RRMF_XANC8 RecName: Full=Probable rRNA maturation factor gi|229554360|sp|B0RRV9|RRMF_XANCB RecName: Full=Probable rRNA maturation factor gi|21113476|gb|AAM41609.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573438|gb|AAY48848.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732996|emb|CAP51194.1| Conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length = 161 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 56/138 (40%), Positives = 74/138 (53%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + + +L++ D +LN YRG D TNVLSFP Sbjct: 27 FRKWVAAALK----GRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAEMPQGLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 83 KGVKMPLLGDLVICAPVVAREAAEQGKSLSAHYAHLTVHGTLHLLGWDHEDDKEADAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL +LGI+DPY + Sbjct: 143 LEREILAELGIDDPYAGE 160 >gi|254251465|ref|ZP_04944783.1| hypothetical protein BDAG_00652 [Burkholderia dolosa AUO158] gi|124894074|gb|EAY67954.1| hypothetical protein BDAG_00652 [Burkholderia dolosa AUO158] Length = 270 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 78/162 (48%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ I F + +L++ F Sbjct: 121 PELDLSV-----QYGDEIAPDVRKTLPKRKLIAEWIEPALF---SSAQLTVRFVGEEEGR 172 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D PTNVL+F ++GD+VL ++E EA GK + H H Sbjct: 173 TLNAGYRHKDYPTNVLTFAY----DPAPDGTVIGDLVLCCPVVEKEAQEQGKPLDAHYAH 228 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 229 LLVHGVLHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR 270 >gi|209966241|ref|YP_002299156.1| hypothetical protein RC1_2976 [Rhodospirillum centenum SW] gi|209959707|gb|ACJ00344.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 226 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 90/187 (48%), Gaps = 35/187 (18%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 +AVE+ W E L E + A +++G V + ELS+V D + TLN +Y Sbjct: 19 VAVESGGW--ETDLPD-AETLVLTAAEAALARGEGVPDGPAELSVVLADDATVRTLNRDY 75 Query: 75 RGIDKPTNVLSFPTAFASSD--------------------------------GCSSLMLG 102 RG D+PTNVLSF D ++LG Sbjct: 76 RGKDRPTNVLSFALYADGDDADTPPEGLEVEQDGPEGDIPGDDDAEDSLAQGDAPPVLLG 135 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 D++LAYE + EA K +HL HL++HG LHLLGYDH+ D DA ME LE IL L Sbjct: 136 DVILAYETVVREAGEQNKPLADHLTHLVVHGVLHLLGYDHITDPDAERMERLETEILAGL 195 Query: 163 GINDPYE 169 GI+DPY Sbjct: 196 GISDPYA 202 >gi|75674215|ref|YP_316636.1| hypothetical protein Nwi_0016 [Nitrobacter winogradskyi Nb-255] gi|123614405|sp|Q3SWQ7|RRMF_NITWN RecName: Full=Probable rRNA maturation factor gi|74419085|gb|ABA03284.1| Protein of unknown function [Nitrobacter winogradskyi Nb-255] Length = 190 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 86/159 (54%), Gaps = 8/159 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +I V W E E V +A++ + EL+++ TD I TLN Sbjct: 31 EILVVADCWRAEAG----AEAVIHRAIATA-AGMVDKDTGDAELAIMLTDDAGIRTLNAN 85 Query: 74 YRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RG+DKPTNVLSFP + MLGDI +AYE + EA K F++HL HL Sbjct: 86 WRGLDKPTNVLSFPALQPTGPCLPDDPPRMLGDIAIAYETLRREAGDERKTFDHHLSHLA 145 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HGFLHL+GYDH D +A ME LER IL LGI DPY Sbjct: 146 VHGFLHLIGYDHETDGEAEEMESLERQILAQLGIPDPYA 184 >gi|58582392|ref|YP_201408.1| putative metalloprotease [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624266|ref|YP_451638.1| putative metalloprotease [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|62901406|sp|Q5GZ48|RRMF_XANOR RecName: Full=Probable rRNA maturation factor gi|123521734|sp|Q2P263|RRMF_XANOM RecName: Full=Probable rRNA maturation factor gi|58426986|gb|AAW76023.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368206|dbj|BAE69364.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 161 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 63/163 (38%), Positives = 83/163 (50%), Gaps = 10/163 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L +AV AL + V F K V+ + + +L++ D +L Sbjct: 6 IRLDVAVSYALPRAGLPSA----VSFRKWVAAALK----GRIREADLAVRLVDEKEGCSL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N YRG D TNVLSFP G +LGD+V+ ++ EA GK H H Sbjct: 58 NHHYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAH 117 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY + Sbjct: 118 LTVHGTLHLLGWDHDDDKEADAMEQLEREILADLGIDDPYAGE 160 >gi|224827049|ref|ZP_03700146.1| protein of unknown function UPF0054 [Lutiella nitroferrum 2002] gi|224600715|gb|EEG06901.1| protein of unknown function UPF0054 [Lutiella nitroferrum 2002] Length = 168 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 69/162 (42%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L I + A L+ V ++SL+ + Sbjct: 18 ELTLDIRSDAADLPRAADLQRWARAALQADV------------QKAQISLLLVEGEEGRA 65 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG D TNVLSF + L GD+VL ++ EA H HL Sbjct: 66 LNRDYRGKDYATNVLSFALNEGETLPGMPLF-GDLVLCVPVVAREAAEQDTPLAAHYAHL 124 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHL GYDH DD +A VME LE +IL LG DPY + Sbjct: 125 TVHGMLHLQGYDHEDDDEAEVMEALETAILAKLGYPDPYAAE 166 >gi|27375904|ref|NP_767433.1| hypothetical protein bll0793 [Bradyrhizobium japonicum USDA 110] gi|46577464|sp|Q89W99|RRMF_BRAJA RecName: Full=Probable rRNA maturation factor gi|27349042|dbj|BAC46058.1| bll0793 [Bradyrhizobium japonicum USDA 110] Length = 183 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 70/171 (40%), Positives = 94/171 (54%), Gaps = 9/171 (5%) Query: 4 KKVNLPRLDL-QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 K ++ P L + ++ V W E + + A A ++ E++++ T Sbjct: 13 KTMSHPNLPMTEVLVVADCWQREPDSEAVIQRAVAAAAESVDE-----DVAEAEVAVMLT 67 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLG 119 D I TLN +RGIDKPTNVLSFP + G + MLGDI +AYE + EA+ Sbjct: 68 DDAGIRTLNSNWRGIDKPTNVLSFPALQPEGEWKEGDAPRMLGDIAIAYETMRREADEEK 127 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 K F++HL HL +HGFLHL+GYDH +D DA ME LE IL LGI DPY Sbjct: 128 KPFDHHLSHLAVHGFLHLIGYDHENDDDAEEMEALETQILAHLGIPDPYAD 178 >gi|170718769|ref|YP_001783953.1| hypothetical protein HSM_0615 [Haemophilus somnus 2336] gi|238688012|sp|B0US54|RRMF_HAES2 RecName: Full=Probable rRNA maturation factor gi|168826898|gb|ACA32269.1| protein of unknown function UPF0054 [Haemophilus somnus 2336] Length = 154 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA E+A +L ++ ++ + + + E+++ D L Sbjct: 6 IDLQIASEDA-----TNLPSVEQIQL------WANAAIRAENSQPEMTVRIVDEEESHHL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F D ++GD+V+ +++E EA K H H+I Sbjct: 55 NLTYRGKDKPTNVLSFP--FECPDEIELPLIGDLVICRQVVEREATEQEKPLMAHWAHMI 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I+ LG DPY ++ Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMERLETEIMLSLGFTDPYIIE 153 >gi|21243197|ref|NP_642779.1| metalloprotease [Xanthomonas axonopodis pv. citri str. 306] gi|294624980|ref|ZP_06703631.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664274|ref|ZP_06729644.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|26006928|sp|Q8PJR6|RRMF_XANAC RecName: Full=Probable rRNA maturation factor gi|21108723|gb|AAM37315.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gi|292600702|gb|EFF44788.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605946|gb|EFF49227.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 161 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 74/138 (53%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + + +L++ D +LN YRG D TNVLSFP Sbjct: 27 FRKWVAAALK----GRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 83 KGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEAEAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL DLGI+DPY + Sbjct: 143 LEREILADLGIDDPYAGE 160 >gi|113460492|ref|YP_718555.1| metal-dependent hydrolase [Haemophilus somnus 129PT] gi|123327121|sp|Q0I1E6|RRMF_HAES1 RecName: Full=Probable rRNA maturation factor gi|112822535|gb|ABI24624.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 154 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA E D +L ++ ++ + + + E+++ D L Sbjct: 6 IDLQIASE-----DVTNLPSVEQIQL------WANAAIRAENSQPEMTVRIVDEEESHHL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F D ++GD+V+ +++E EA K H H+I Sbjct: 55 NLTYRGKDKPTNVLSFP--FECPDEIELPLIGDLVICRQVVEREATEQEKPLMAHWAHMI 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D +A ME LE I+ LG DPY ++ Sbjct: 113 VHGSLHLLGYDHIEDDEAEEMERLETEIMLSLGFTDPYIIE 153 >gi|325914749|ref|ZP_08177087.1| hypothetical protein TIGR00043 [Xanthomonas vesicatoria ATCC 35937] gi|325539026|gb|EGD10684.1| hypothetical protein TIGR00043 [Xanthomonas vesicatoria ATCC 35937] Length = 161 Score = 177 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 81/161 (50%), Gaps = 10/161 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L +AV AL + V F K V+ + + +L++ D +LN Sbjct: 8 LDVAVSYALPRAGLPSA----VSFRKWVAAALK----GRIREADLAVRVVDEKEGCSLNH 59 Query: 73 EYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 YRG D TNVLSFP G +LGD+V+ ++ EA GK H HL Sbjct: 60 HYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLT 119 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG+DH DDK+A ME LER IL DLGI DPY + Sbjct: 120 VHGTLHLLGWDHEDDKEADAMEQLEREILADLGIEDPYAGE 160 >gi|289671363|ref|ZP_06492438.1| putative metalloprotease [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 161 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L +AV AL + V F K V+ + + +L++ D +LN Sbjct: 8 LDVAVSYALPRAGLPSA----VSFRKWVAAALK----GRIREADLAVRVVDEKEGCSLNH 59 Query: 73 EYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 YRG D TNVLSFP G +LGD+V+ ++ EA GK H HL Sbjct: 60 HYRGKDYATNVLSFPAELPKGLPQGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLT 119 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY + Sbjct: 120 VHGTLHLLGWDHEDDKEADAMEQLEREILADLGIDDPYAGE 160 >gi|152996922|ref|YP_001341757.1| hypothetical protein Mmwyl1_2911 [Marinomonas sp. MWYL1] gi|189039860|sp|A6VZE3|RRMF_MARMS RecName: Full=Probable rRNA maturation factor gi|150837846|gb|ABR71822.1| protein of unknown function UPF0054 [Marinomonas sp. MWYL1] Length = 154 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 82/160 (51%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA E A E R E + + E+++ D Sbjct: 5 ELDLQIATEETANLPSEADFRLWVEKALPEV------------DEEFEVTIRIVDEEESH 52 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP F + G +LGD+V+ +I+ EA KE +H H Sbjct: 53 ALNHEYRGKDKPTNVLSFP--FEAPPGLELPLLGDLVICAQIVAKEAAEQNKELFHHWAH 110 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + IHG LHL GYDH++D +A ME +E +L L I+DPY Sbjct: 111 MTIHGILHLRGYDHINDDEADEMESIETELLASLSISDPY 150 >gi|92115656|ref|YP_575385.1| hypothetical protein Nham_0023 [Nitrobacter hamburgensis X14] gi|122418988|sp|Q1QS72|RRMF_NITHX RecName: Full=Probable rRNA maturation factor gi|91798550|gb|ABE60925.1| protein of unknown function UPF0054 [Nitrobacter hamburgensis X14] Length = 190 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 69/159 (43%), Positives = 85/159 (53%), Gaps = 8/159 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ V W E + A + EL+++ TD I TLN Sbjct: 31 EVLVVAECWRAEAGAEAIIHRAVETA-----AGMVDTDTGDAELAIMLTDDAGIRTLNAN 85 Query: 74 YRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RGIDKPTNVLSFP A S + MLGDI +AYE + EA K F++HL HL Sbjct: 86 WRGIDKPTNVLSFPALQPTGAPSPDDAPRMLGDIAIAYETLRREACDEHKPFDHHLSHLT 145 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 IHGFLHL+GYDH D++A ME LER IL LGI DPY Sbjct: 146 IHGFLHLIGYDHETDEEAGEMENLERKILARLGIPDPYA 184 >gi|238897293|ref|YP_002922970.1| putative metal-dependent hydrolase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259585969|sp|C4K8I5|RRMF_HAMD5 RecName: Full=Probable rRNA maturation factor gi|229465048|gb|ACQ66822.1| putative metal-dependent hydrolase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 151 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 86/165 (52%), Gaps = 15/165 (9%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 +N LDLQIA +N +E + +S + E+++ D Sbjct: 1 MNQIILDLQIACVDNQGLPNENDFQLW------------LSSAISPFKKNAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LNF+YR IDKPTNVLSFP F S +LGD+++ +I+E EA + K Sbjct: 49 IESRQLNFQYRQIDKPTNVLSFP--FISPVQVPLPLLGDLIICRQIVEKEAVLQKKALWA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H H+++HG LHLLGYDH+ + DA ME +E I+ LG +PY+ Sbjct: 107 HWAHMVVHGALHLLGYDHILNDDAKKMESIETEIMMYLGYPNPYD 151 >gi|289665628|ref|ZP_06487209.1| putative metalloprotease [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 161 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L +AV AL + V F K V+ + + +L++ D +LN Sbjct: 8 LDVAVSYALPRAGLPSA----VSFRKWVAAALK----GRIREADLAVRVVDEKEGCSLNH 59 Query: 73 EYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 YRG D TNVLSFP G +LGD+V+ ++ EA GK H HL Sbjct: 60 HYRGKDYATNVLSFPAKLPEGLPKGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLT 119 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY + Sbjct: 120 VHGTLHLLGWDHEDDKEADAMEQLEREILADLGIDDPYAGE 160 >gi|166711740|ref|ZP_02242947.1| hypothetical protein Xoryp_09845 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 161 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 63/163 (38%), Positives = 84/163 (51%), Gaps = 10/163 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L +AV AL + V F K V+ + + +L++ D +L Sbjct: 6 IRLDVAVSYALPRAGLPSA----VSFRKWVAAALK----GRIREADLAVRVVDEKEGCSL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N+ YRG D TNVLSFP G +LGD+V+ ++ EA GK H H Sbjct: 58 NYHYRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAH 117 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L +HG LHLLG+DH DDK+A ME LER IL DLGI+DPY + Sbjct: 118 LTVHGTLHLLGWDHDDDKEADAMEQLEREILADLGIDDPYAGE 160 >gi|239996132|ref|ZP_04716656.1| hypothetical protein AmacA2_16882 [Alteromonas macleodii ATCC 27126] Length = 158 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 4/155 (2%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I V+ A GDE L + + +N + K + E E+++ FTD ++LN EY Sbjct: 5 IDVQQAFEGDEAILSAIPSPSELELWANAVLKYEGLAEQ--EVTIRFTDEAESQSLNHEY 62 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 RG DKPTNVLSFP F + G +LGD+V+ +I EA K+ NH H+ +HG Sbjct: 63 RGKDKPTNVLSFP--FEAPPGIEINLLGDLVICAPVISREAEEQHKDVSNHYAHMTVHGL 120 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL+GYDH+DD +A ME E IL LGI +PYE Sbjct: 121 LHLMGYDHIDDAEAEEMESKEIDILAHLGIANPYE 155 >gi|188582642|ref|YP_001926087.1| hypothetical protein Mpop_3401 [Methylobacterium populi BJ001] gi|179346140|gb|ACB81552.1| protein of unknown function UPF0054 [Methylobacterium populi BJ001] Length = 161 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 4/160 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W + E +AV ++ VE+S++ D ++TLN Sbjct: 5 EIDIAVEDARWEQAVP---DLEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQTLN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAADGPLQPGMARPLGDVVLAYDTLLRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG DH + +A ME LE + L LGI +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRTLGIPNPYDD 161 >gi|254562379|ref|YP_003069474.1| metalloprotease [Methylobacterium extorquens DM4] gi|254269657|emb|CAX25629.1| putative metalloprotease [Methylobacterium extorquens DM4] Length = 161 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 4/160 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAIP---ELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQELN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A S + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPSQPGVARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYDD 161 >gi|163852621|ref|YP_001640664.1| hypothetical protein Mext_3206 [Methylobacterium extorquens PA1] gi|163664226|gb|ABY31593.1| protein of unknown function UPF0054 [Methylobacterium extorquens PA1] Length = 161 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 4/160 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAIP---ELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQELN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A S + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPSQPGLARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYDD 161 >gi|119470864|ref|ZP_01613475.1| hypothetical protein ATW7_05976 [Alteromonadales bacterium TW-7] gi|119446091|gb|EAW27370.1| hypothetical protein ATW7_05976 [Alteromonadales bacterium TW-7] Length = 152 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E E + ++ + EL++V +D + + Sbjct: 4 ELDLQIACEFDNLPSEAQFALWADKALSQ------------YRDESELTIVISDEAQSQQ 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG +KPTNVLSF F + G ++GD+V+ I+ EA K F +H H+ Sbjct: 52 LNNDYRGKNKPTNVLSF--EFEAPPGIELPLVGDLVICPAIVLAEAVEQEKSFHDHFAHM 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLG+DH+ +DA ME +E+ +L +L I DPY + Sbjct: 110 VIHGCLHLLGFDHIKSEDALQMESIEKQLLAELNIADPYRDE 151 >gi|170747071|ref|YP_001753331.1| hypothetical protein Mrad2831_0637 [Methylobacterium radiotolerans JCM 2831] gi|170653593|gb|ACB22648.1| protein of unknown function UPF0054 [Methylobacterium radiotolerans JCM 2831] Length = 159 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 4/159 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ +AVE+A W + E + +AV ++ + VE+S++ TD + LN Sbjct: 4 EIDLAVEDARWETAV---ADLEALVTRAVEAGLAVAPEKPDGPVEVSVLLTDDAAVRELN 60 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +RG DKPTNVLSFP A +++ LGD+VLAYE + E+ K +NHL HL++ Sbjct: 61 RTWRGKDKPTNVLSFPAAPQPRHAGTAVPLGDVVLAYETLVRESAEQSKPLQNHLAHLLV 120 Query: 132 HGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HG LH LG DH + + +A ME LE + L LGI DPY Sbjct: 121 HGTLHCLGQDHEIGETEADAMEALEVAALATLGIPDPYA 159 >gi|77359990|ref|YP_339565.1| hypothetical protein PSHAa1044 [Pseudoalteromonas haloplanktis TAC125] gi|123589178|sp|Q3IK77|RRMF_PSEHT RecName: Full=Probable rRNA maturation factor gi|76874901|emb|CAI86122.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 152 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E E + ++ + EL++V +D + + Sbjct: 4 ELDLQIACEFDNLPSEAQFALWADKALSQ------------YRDESELTIVISDEAQSQQ 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG +KPTNVLSF F + G ++GD+V+ I+ EA K F +H H+ Sbjct: 52 LNNDYRGKNKPTNVLSF--EFEAPPGIDIPLVGDLVICPAIVLAEAIEQEKSFHDHFAHM 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLG+DH+ +DA ME +E+ +L +L I DPY + Sbjct: 110 VIHGCLHLLGFDHIKSEDAFEMESIEKQLLAELNIADPYRDE 151 >gi|307942737|ref|ZP_07658082.1| putative metalloprotease [Roseibium sp. TrichSKD4] gi|307773533|gb|EFO32749.1| putative metalloprotease [Roseibium sp. TrichSKD4] Length = 171 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 95/159 (59%), Gaps = 6/159 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L + +++E WG L+ LCE +AV+ ++ G FV + ELS+V TD I+ L Sbjct: 10 LTIDLSIEAGDWGPLEPLKKLCE----RAVAETLASGLFVVPHS-ELSVVLTDDASIKVL 64 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R DKPTNVLSFP + D +LGDIV+A E + EA+ +G EF HL HL Sbjct: 65 NNNWRQKDKPTNVLSFPGS-DPDDERYGPLLGDIVVALETVTREADEMGIEFPAHLTHLF 123 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHL YDH D ++A VME ER I+ LG DPYE Sbjct: 124 VHGLLHLFDYDHQDLEEAEVMERKERQIMRCLGYEDPYE 162 >gi|316931569|ref|YP_004106551.1| hypothetical protein Rpdx1_0174 [Rhodopseudomonas palustris DX-1] gi|315599283|gb|ADU41818.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris DX-1] Length = 167 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 87/157 (55%), Gaps = 6/157 (3%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ +E W E E V +A+ ++ EL+++ TD I LN Sbjct: 10 EVVIEADCWQAESS----AEAVVLRAIETA-AEAIDAGTGGAELAVMLTDDEHIRALNAS 64 Query: 74 YRGIDKPTNVLSFPTAFAS-SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +RG DKPTNVLSFP A + MLGDI +AY+ + EA+ GK F +HL HL +H Sbjct: 65 FRGKDKPTNVLSFPAAQPEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFGHHLSHLAVH 124 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GFLHL+GYDH D+ A ME ER+IL LGI DPY Sbjct: 125 GFLHLVGYDHETDQQADEMEDAERTILARLGIPDPYA 161 >gi|121997682|ref|YP_001002469.1| hypothetical protein Hhal_0891 [Halorhodospira halophila SL1] gi|145558843|sp|A1WVF5|RRMF_HALHL RecName: Full=Probable rRNA maturation factor gi|121589087|gb|ABM61667.1| protein of unknown function UPF0054 [Halorhodospira halophila SL1] Length = 154 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-DG 95 A+ V + + EL++ D LN +YRG DKPTNVLSFP Sbjct: 19 AERVQAWLEPVFEAHGRGGELTVRIVDEDESRALNRDYRGRDKPTNVLSFPCELPPGLPA 78 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 ++ +LGD+V+ ++ EA GK +H H+++HG LHLLGYDH D A ME E Sbjct: 79 EAAQILGDLVVCAPVVAREAAEQGKPEADHWAHMLVHGALHLLGYDHEDPAQAERMEAEE 138 Query: 156 RSILEDLGINDPYE 169 R IL LG+ DPY+ Sbjct: 139 RRILAALGVPDPYQ 152 >gi|254490268|ref|ZP_05103457.1| conserved hypothetical protein TIGR00043, putative [Methylophaga thiooxidans DMS010] gi|224464401|gb|EEF80661.1| conserved hypothetical protein TIGR00043, putative [Methylophaga thiooxydans DMS010] Length = 155 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 80/160 (50%), Gaps = 15/160 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D Q A + DE + E A E ELS+ D L Sbjct: 5 VDFQPAF-DGDTPDEAAFQRWAEAALATV------------EEDCELSIRLVDEDESAEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG PTNVLSFP F S +LGD+V+ I+E EA K E+H H++ Sbjct: 52 NSQYRGKTGPTNVLSFP--FDSDIALEPTLLGDLVICVPIVEKEAQQQDKIAEHHWAHMV 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 IHG LHLLGYDH++D +A ME LE IL + I +PYE+ Sbjct: 110 IHGCLHLLGYDHIEDDEAEEMETLEIQILHKMNITNPYEL 149 >gi|332532465|ref|ZP_08408343.1| A heat shock protein involved in translation, predicted protease [Pseudoalteromonas haloplanktis ANT/505] gi|332038108|gb|EGI74555.1| A heat shock protein involved in translation, predicted protease [Pseudoalteromonas haloplanktis ANT/505] Length = 152 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E E + ++ + ELS+V +D + + Sbjct: 4 ELDLQIACEFDNLPSEEQFALWADKALSQ------------YRDESELSIVISDEAQSQQ 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG +KPTNVLSF F + G ++GD+++ I+ EA K F +H H+ Sbjct: 52 LNNDYRGKNKPTNVLSF--EFEAPPGIDIPLVGDLIICPAIVLAEAIEQEKSFHDHFAHM 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLG+DH+ DA ME +E+ +L +L I DPY D Sbjct: 110 VIHGCLHLLGFDHIKSDDALEMESIEKQLLAELNIADPYRDD 151 >gi|319408020|emb|CBI81674.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 158 Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 5/159 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I +E++ W +E L + + +L + + ELSL+FT+ I Sbjct: 1 MITIDITIEDSEWDNEDVLYDITTKALTTTMHHLS-----LNQVTSELSLLFTNDDHIAQ 55 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N ++R +KPTNVLSFP MLGDI++A E I EA GK F++HL H+ Sbjct: 56 INAQWRSQNKPTNVLSFPAFPLKVGQNPKPMLGDIIIARETIMREAKEEGKSFQDHLTHM 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I+HG LHLLGY+H + +A ME LER IL L I +PY Sbjct: 116 IVHGLLHLLGYNHETNDEANQMEMLEREILSKLSIKNPY 154 >gi|240139954|ref|YP_002964431.1| putative metalloprotease [Methylobacterium extorquens AM1] gi|240009928|gb|ACS41154.1| putative metalloprotease [Methylobacterium extorquens AM1] Length = 161 Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 4/160 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAIP---ELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQALN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A S + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPSQPGLARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYDD 161 >gi|304393796|ref|ZP_07375721.1| putative metalloprotease [Ahrensia sp. R2A130] gi|303293995|gb|EFL88370.1| putative metalloprotease [Ahrensia sp. R2A130] Length = 172 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 66/161 (40%), Positives = 89/161 (55%), Gaps = 6/161 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + +E WGDE L TL E A A +++ E S +FT+ + Sbjct: 1 MIAFDLTIEGGEWGDEAALATLIERTLATAAPHIVD----GLPEDAETSFLFTNDEAVRV 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++RG DKPTNVLSF G + +LGDI +A E + EA K F+NHL H+ Sbjct: 57 LNRDWRGQDKPTNVLSFAAN--EGGGPVTPLLGDIAIAQETVAREAEEQAKSFDNHLTHM 114 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 I+HG LHL+G+DH +D +A ME LER IL DL + DPY Sbjct: 115 IVHGLLHLIGHDHENDTEADEMEALERRILADLSMADPYAD 155 >gi|218531462|ref|YP_002422278.1| hypothetical protein Mchl_3530 [Methylobacterium chloromethanicum CM4] gi|218523765|gb|ACK84350.1| protein of unknown function UPF0054 [Methylobacterium chloromethanicum CM4] Length = 161 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 4/160 (2%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ IAVE+A W I E +AV ++ VE+S++ D ++ LN Sbjct: 5 EIDIAVEDARWEQAIP---ELEAFTLRAVEAGLAILPDSAAGPVEVSVLLADDATVQALN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R DKPTNVLSFP A + LGD+VLAY+ + E+ K FE+H HL++ Sbjct: 62 RTWRNKDKPTNVLSFPAAEQPFQPGVARPLGDVVLAYDTLVRESAEQSKPFEHHFAHLLV 121 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 HG LHLLG DH + +A ME LE + L LG+ +PY+ Sbjct: 122 HGTLHLLGQDHETGEAEADAMEALEVAALRALGVPNPYDD 161 >gi|91974722|ref|YP_567381.1| hypothetical protein RPD_0240 [Rhodopseudomonas palustris BisB5] gi|123735849|sp|Q13EK9|RRMF_RHOPS RecName: Full=Probable rRNA maturation factor gi|91681178|gb|ABE37480.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris BisB5] Length = 195 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 86/163 (52%), Gaps = 11/163 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ + W E ++ A + + + EL+++ TD + LN Sbjct: 33 EVVIAADCWQAEASAESVVLRAIEAAATMIDA-----DTGDAELAVMLTDDDGVRALNAS 87 Query: 74 YRGIDKPTNVLSFPTAFAS------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 YRGIDKPTNVLSFP G + MLGDI +AY+ + EA+ GK F +HL Sbjct: 88 YRGIDKPTNVLSFPAPQPDYQDACQDSGGAPQMLGDIAIAYQTVRREADDEGKPFAHHLS 147 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL +HGFLHL+GYDH D +A ME ERSIL LGI DPY Sbjct: 148 HLAVHGFLHLVGYDHETDAEAETMESTERSILAGLGIPDPYAD 190 >gi|23015403|ref|ZP_00055180.1| COG0319: Predicted metal-dependent hydrolase [Magnetospirillum magnetotacticum MS-1] Length = 164 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 93/162 (57%), Gaps = 9/162 (5%) Query: 11 LDLQIAVENALWGDEI-HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ + ++ W D + C + A A+ + E +VELS+V D ++ Sbjct: 5 IDIAVDIQYPAWTDVLPDAEARCGRLAATAL-----GAVDLPEGVVELSIVLADDATVQG 59 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN ++RG D+PTNVLSF + + L+LGD++LAYE EA GK +H Sbjct: 60 LNRDWRGKDQPTNVLSFASLDDEDAPLVPGAPLLLGDVILAYETCAAEAKDQGKTLADHF 119 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LHLLGYDH+DD++A ME LE ++L LGI DPY Sbjct: 120 GHLVVHGVLHLLGYDHMDDEEAAEMESLETTLLAALGIADPY 161 >gi|90407493|ref|ZP_01215676.1| hypothetical protein PCNPT3_11282 [Psychromonas sp. CNPT3] gi|90311414|gb|EAS39516.1| hypothetical protein PCNPT3_11282 [Psychromonas sp. CNPT3] Length = 157 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 86/158 (54%), Gaps = 9/158 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA DE L +L + + I KG + EL++ DS + L Sbjct: 5 IDLQIAT-----MDEKALPSLA--LIETWIKEAIIKGSSITREEAELTVRIVDSVESQQL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR DKPTNVLSFP F + G +LGD+V+ +I+E EA K+ H H++ Sbjct: 58 NGQYRHKDKPTNVLSFP--FQAPMGIQLPLLGDLVICKQIVEQEALEQNKDLNAHWAHML 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLG+DH+ ++ A ME LE IL LG PY Sbjct: 116 IHGSLHLLGFDHIIEQQALEMESLETKILVTLGFPPPY 153 >gi|146337217|ref|YP_001202265.1| putative metal-dependent hydrolase [Bradyrhizobium sp. ORS278] gi|146190023|emb|CAL74015.1| conserved hypothetical protein; putative metal-dependent hydrolase [Bradyrhizobium sp. ORS278] Length = 180 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 85/160 (53%), Gaps = 8/160 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ V W D+ + + A + + E++++ TD I TLN Sbjct: 21 EVIVAADCWQDQPDAEDVIQRAIIAAAEMVDA-----DVGDAEIAVMLTDDGGIRTLNSN 75 Query: 74 YRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RGIDKPTNVLSFP D + MLGDI +AYE + EA+ K F +HL HL Sbjct: 76 WRGIDKPTNVLSFPALQPTGPRGDEDAPRMLGDIAIAYETMRREADEEQKPFAHHLSHLT 135 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHL+GYDH D +A ME LE IL LGI DPY Sbjct: 136 VHGFLHLIGYDHETDDEAEEMEALETEILAHLGIPDPYAD 175 >gi|154245756|ref|YP_001416714.1| hypothetical protein Xaut_1812 [Xanthobacter autotrophicus Py2] gi|154159841|gb|ABS67057.1| protein of unknown function UPF0054 [Xanthobacter autotrophicus Py2] Length = 176 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 86/158 (54%), Gaps = 4/158 (2%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + VE W EV+ +A ++ E+++ TD RI LN Sbjct: 20 IDVLVEADGWSALPD----AEVICVRAAQAALAACGDEVPEPCEVAITLTDDARIRVLNR 75 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+RG DK TNVLSFP D + LGDI++A E + EA K +HL HL++H Sbjct: 76 EWRGKDKATNVLSFPQPDLPDDVDAPQPLGDIIVALETLTGEARAEDKTAGHHLAHLVVH 135 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G LHLLGYDH+DD +A ME LER IL LGI+DPY + Sbjct: 136 GTLHLLGYDHIDDTEAEEMEALERRILAGLGIDDPYAL 173 >gi|71909141|ref|YP_286728.1| hypothetical protein Daro_3529 [Dechloromonas aromatica RCB] gi|123626555|sp|Q47A73|RRMF_DECAR RecName: Full=Probable rRNA maturation factor gi|71848762|gb|AAZ48258.1| Protein of unknown function UPF0054 [Dechloromonas aromatica RCB] Length = 149 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 17/164 (10%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 N P L ++V+ A + + LR F + + G E+++ D+ Sbjct: 3 NAPSNRLNLSVQYACNREGLPLR----ADFVRWARAALVGGG-------EVTIRLVDADE 51 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 ++LN EYRG D TNVLSFP +++GD+V+ ++ EA K E H Sbjct: 52 GQSLNKEYRGKDYATNVLSFPY------DTEPVVMGDLVVCPSVVSKEAAEQNKPLEAHY 105 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL +HG LHL G+DH +D DA ME ER IL +G DPY V Sbjct: 106 AHLTVHGMLHLQGWDHDNDDDAQAMEDEEREILAAMGYPDPYAV 149 >gi|315127053|ref|YP_004069056.1| hypothetical protein PSM_A1982 [Pseudoalteromonas sp. SM9913] gi|315015567|gb|ADT68905.1| hypothetical protein PSM_A1982 [Pseudoalteromonas sp. SM9913] Length = 152 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E + V ++ + EL++V +D + + Sbjct: 4 ELDLQIACEFDNLPSLEQFAMWADKVLSQ------------YRDESELTIVISDEAQSQQ 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG +KPTNVLSF F + G ++GD+++ I+ EA K F +H H+ Sbjct: 52 LNNDYRGKNKPTNVLSF--EFEAPPGIDIPLVGDLIICPAIVLAEAQEQEKSFHDHFAHM 109 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLG+DH+ +DA ME +E+ +L +L I DPY D Sbjct: 110 VIHGCLHLLGFDHIKSEDALEMESIEKQLLAELNIADPYRDD 151 >gi|87119368|ref|ZP_01075266.1| hypothetical protein MED121_13900 [Marinomonas sp. MED121] gi|86165759|gb|EAQ67026.1| hypothetical protein MED121_13900 [Marinomonas sp. MED121] Length = 154 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 15/160 (9%) Query: 10 RLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQ+A ++ E + + + EL++ D + Sbjct: 5 DLDLQLASQDTKGLPSEADFMQWIQPALPQ------------NDTCFELTVRIVDEEESQ 52 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN +YRG DK TNVLSFP F DG +LGD+V+ +++E EA K+ +H H Sbjct: 53 NLNHQYRGKDKSTNVLSFP--FEVPDGIELPLLGDLVICRQVVEKEAVEQNKKLFHHWAH 110 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++IHG LHL G+DH+ + DA ME LE SIL L I +PY Sbjct: 111 MVIHGTLHLRGFDHIKEDDAQEMESLEISILGQLDIPNPY 150 >gi|78048198|ref|YP_364373.1| putative metalloprotease [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925033|ref|ZP_08186455.1| hypothetical protein TIGR00043 [Xanthomonas perforans 91-118] gi|123730288|sp|Q3BS90|RRMF_XANC5 RecName: Full=Probable rRNA maturation factor gi|78036628|emb|CAJ24319.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544545|gb|EGD15906.1| hypothetical protein TIGR00043 [Xanthomonas perforans 91-118] Length = 161 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 74/138 (53%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + + +L++ D +LN YRG D TNVLSFP Sbjct: 27 FRKWVAAALK----GRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 83 KGIKMPLLGDLVICAPVVAREAAEQGKLLAAHYAHLTVHGTLHLLGWDHEDDKEAEAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL DLGI+DPY + Sbjct: 143 LEREILADLGIDDPYAGE 160 >gi|260431175|ref|ZP_05785146.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415003|gb|EEX08262.1| conserved hypothetical protein [Silicibacter lacuscaerulensis ITI-1157] Length = 164 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 68/172 (39%), Positives = 98/172 (56%), Gaps = 20/172 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L+I+VE++ W E + +AVS ++ + ++ E+S++ D RI L Sbjct: 1 MNLEISVEDSRW-------QRLEELSRRAVSATLAYLR-MNPDLCEVSILGCDDSRIAEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+RG PTNVLS+P D ++LGDI ++Y+ EAN Sbjct: 53 NNEFRGKPAPTNVLSWPAEDLAPEEPGATPPLPEPDFTGEIVLGDIAISYDTCLREANEA 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GK ++H+VHLI+HG LHLLGYDHV D DA +MEG E IL LGI++PY V Sbjct: 113 GKSMDDHVVHLIVHGVLHLLGYDHVRDPDATLMEGCEIEILGKLGIDNPYNV 164 >gi|317047310|ref|YP_004114958.1| hypothetical protein Pat9b_1080 [Pantoea sp. At-9b] gi|316948927|gb|ADU68402.1| protein of unknown function UPF0054 [Pantoea sp. At-9b] Length = 157 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E+ +E + E + E+++ D Sbjct: 1 MSAVILDLQLACAESQGLPEEAAFQRWLEAAVT------------PFQPESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E Sbjct: 49 AESHELNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAVEQGKSLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 107 HWAHMVVHGTLHLLGYDHIEDDEAEEMEALETEIMLALGYPDPY 150 >gi|92114457|ref|YP_574385.1| hypothetical protein Csal_2336 [Chromohalobacter salexigens DSM 3043] gi|122419590|sp|Q1QV22|RRMF_CHRSD RecName: Full=Probable rRNA maturation factor gi|91797547|gb|ABE59686.1| protein of unknown function UPF0054 [Chromohalobacter salexigens DSM 3043] Length = 154 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 14/164 (8%) Query: 8 LPRLDLQIAVENA--LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 P +D Q+A+E A L + L V A+ + ELS+ F + Sbjct: 2 TPDIDRQVALETATELLPTQADLEAWVGAVLAR----------HPDTDRHELSVRFVTAD 51 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + LN +YRG DKPTNVLSFP F + G +LGD+ + + ++ EA GK +H Sbjct: 52 ESQALNRDYRGKDKPTNVLSFP--FEAPPGLPLALLGDLAICHAVVVDEAAEQGKPLAHH 109 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H++IHG LHLLGYDH+DD++A ME LER +L I DPY Sbjct: 110 YAHMVIHGTLHLLGYDHIDDREAEEMEALERELLAHFAIGDPYA 153 >gi|134296888|ref|YP_001120623.1| unkown domain/putative metalloprotease fusion protein [Burkholderia vietnamiensis G4] gi|134140045|gb|ABO55788.1| protein of unknown function UPF0054 [Burkholderia vietnamiensis G4] Length = 258 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+ +++V+ +GDEI + K ++ I F +L++ F T Sbjct: 108 ELEFELSVQ---YGDEITAELRKTLPKRKLIAEWIEPALFA---SAQLTVRFVGEEEGRT 161 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F ++GD+VL ++E EA K H HL Sbjct: 162 LNAGYRHKDYPTNVLTFAY----DPAPDGTVIGDLVLCCPVVEKEAREQNKPLAAHYAHL 217 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH D DA ME LE IL LG +PY+ Sbjct: 218 LVHGALHAQGYDHETSDADAAEMEALEIDILAKLGFPNPYQ 258 >gi|85714183|ref|ZP_01045172.1| hypothetical protein NB311A_08503 [Nitrobacter sp. Nb-311A] gi|85699309|gb|EAQ37177.1| hypothetical protein NB311A_08503 [Nitrobacter sp. Nb-311A] Length = 190 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 83/158 (52%), Gaps = 8/158 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +I V W E + A + EL+++ TD I TLN Sbjct: 31 EILVVADCWRAEADAEAIIHHAIETA-----AGMVDEDTGDAELAIMLTDDAGIHTLNAN 85 Query: 74 YRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RGIDKPTNVLSFP S G MLGDI +AYE + EA+ K F +HL HL Sbjct: 86 WRGIDKPTNVLSFPALQPTGPSLPGDPPRMLGDIAIAYETLRREADNEHKPFSHHLSHLA 145 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHGFLHL+GYDH D DA ME LER IL LGI DPY Sbjct: 146 IHGFLHLIGYDHETDADAVEMENLERKILAQLGIPDPY 183 >gi|283784429|ref|YP_003364294.1| hypothetical protein ROD_06711 [Citrobacter rodentium ICC168] gi|282947883|emb|CBG87445.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 155 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN A +E +T + + E+++ D Sbjct: 1 MSQVILDLQLACENNAGLPEEARFQTWLNAAIPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAREQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|254787741|ref|YP_003075170.1| hypothetical protein TERTU_3876 [Teredinibacter turnerae T7901] gi|237685656|gb|ACR12920.1| conserved hypothetical protein TIGR00043 [Teredinibacter turnerae T7901] Length = 155 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 80/162 (49%), Gaps = 13/162 (8%) Query: 10 RLDLQIA--VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +LD Q A VE + DE L + VFA F + N + + D Sbjct: 4 QLDFQNASTVETSAMPDERDLLSWLNAVFA------SQPATFTEPN---ICVRIVDEGES 54 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 E LN YRG PTNVLSFP G +LGD+V+ +++ EA K H Sbjct: 55 EELNSTYRGKHSPTNVLSFPADLPP--GVDIELLGDLVICAQVVAREAEEQAKAPAAHWA 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+++HG LHLLGYDH++D +A ME LE IL+ L PYE Sbjct: 113 HMVVHGCLHLLGYDHIEDDEADAMEALETKILQALDFPPPYE 154 >gi|78067492|ref|YP_370261.1| putative metalloprotease [Burkholderia sp. 383] gi|77968237|gb|ABB09617.1| protein of unknown function UPF0054 [Burkholderia sp. 383] Length = 258 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 80/166 (48%), Gaps = 13/166 (7%) Query: 5 KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + P LDL + +GDEI + K ++ I F +L++ F Sbjct: 105 ALREPELDLSV-----QYGDEITSDVRKTLPKRKLIAEWIEPALFA---SAQLTVRFVGE 156 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 TLN YR D PTNVL+F A ++GD+VL ++E EA+ GK Sbjct: 157 EEGRTLNAGYRHKDYPTNVLTFAYDAAP----DGTVIGDLVLCCPVVEKEAHEQGKPLTA 212 Query: 125 HLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 H HL++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 213 HYAHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 258 >gi|325524865|gb|EGD02813.1| putative metalloprotease fusion protein [Burkholderia sp. TJI49] Length = 258 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+L ++V+ +GDEI + K ++ I F +L++ F T Sbjct: 108 ELELDLSVQ---YGDEITSEVRKTLPKRKLIAEWIEPALFA---SAQLTVRFVGEEEGRT 161 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F A ++GD+VL ++E EA GK H HL Sbjct: 162 LNAGYRHKDYPTNVLTFAYDAAP----DGTVIGDLVLCCPVVEKEAREQGKPLAAHYAHL 217 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 218 LVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR 258 >gi|312797210|ref|YP_004030132.1| hypothetical protein [Burkholderia rhizoxinica HKI 454] gi|312168985|emb|CBW75988.1| Hypothetical metal-binding protein [Burkholderia rhizoxinica HKI 454] Length = 157 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 67/133 (50%), Gaps = 7/133 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 ++ + F EL++ F D LN YRG D PTNVL+F + ++ Sbjct: 29 RARIAGWVRAALFAP---AELTIRFVDEQEGRALNRSYRGKDYPTNVLTFAYGESDNEPV 85 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 S GD+VL ++E EA K + H HLI+HG LH GYDH DD+ A ME +E Sbjct: 86 S----GDLVLCCPVVESEAREQHKPLDAHYAHLIVHGVLHAQGYDHEDDEQAREMESIET 141 Query: 157 SILEDLGINDPYE 169 IL LG DPY Sbjct: 142 DILARLGYPDPYA 154 >gi|331005427|ref|ZP_08328807.1| A heat shock protein involved in translation [gamma proteobacterium IMCC1989] gi|330420760|gb|EGG95046.1| A heat shock protein involved in translation [gamma proteobacterium IMCC1989] Length = 177 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 3/161 (1%) Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D Q A +A + +E L EL++ D + Sbjct: 14 IDRQNASSSADYLPNEDDLVRWVNTALTHPQVFGGVLLNKPSLVQAELTIRLVDEPESQQ 73 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YR DKPTNVLSFP D +LGD+++ ++ EA K ++H H+ Sbjct: 74 LNNDYRQKDKPTNVLSFPADL--PDIVDLPLLGDLIICAPVVIKEAEEQQKPLQSHWAHM 131 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 ++HG LHLLGYDH+D+ DA +ME +E +L +GI PY V Sbjct: 132 VVHGTLHLLGYDHIDENDANIMEAIETDVLAAMGIACPYTV 172 >gi|163797132|ref|ZP_02191087.1| hypothetical protein BAL199_11501 [alpha proteobacterium BAL199] gi|159177648|gb|EDP62201.1| hypothetical protein BAL199_11501 [alpha proteobacterium BAL199] Length = 182 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 91/168 (54%), Gaps = 8/168 (4%) Query: 2 SVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVF 61 S +DL + V++ W L E V KAV + ++ VELS+V Sbjct: 12 SRSSATAATVDLMVRVDHTDWR---ALLDDPETVVEKAVLAALDA---LEPEAVELSVVL 65 Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 D + LN ++RG D PTNVLSFP AF G LGD++LA E ++ EA GK Sbjct: 66 ADDAAVRALNRDHRGKDAPTNVLSFPPAFVPPAG--PRPLGDVILALETVQREAVEQGKA 123 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HL HL++HG LHL GYDH + DA ME LER+IL LG+ DPY Sbjct: 124 TVDHLRHLVVHGVLHLSGYDHETESDAEEMEDLERTILAGLGVADPYA 171 >gi|332306416|ref|YP_004434267.1| hypothetical protein Glaag_2054 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173745|gb|AEE22999.1| protein of unknown function UPF0054 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 152 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 13/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA D ++L + F + + +++ + E+++ D + L Sbjct: 5 VDLQIA------SDALNLPKTDD--FQRWLDAVLANQQLSNQ---EITVRIVDKEESQDL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G S +LGD+V+ ++ EA K +H H+I Sbjct: 54 NHTYRGKDKPTNVLSFP--FEAPPGLSLNLLGDLVVCASVVADEAKEQHKALAHHWAHMI 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HG LHLLG+DH+ D +A ME +E IL+ I+DPY+ Sbjct: 112 VHGALHLLGFDHITDDEAQQMEAVEVIILKQFSIDDPYQD 151 >gi|71276466|ref|ZP_00652742.1| Protein of unknown function UPF0054 [Xylella fastidiosa Dixon] gi|71898875|ref|ZP_00681042.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] gi|71162782|gb|EAO12508.1| Protein of unknown function UPF0054 [Xylella fastidiosa Dixon] gi|71731287|gb|EAO33351.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] Length = 213 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 6/135 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F K V+ + + +L++ D LN+ YR D TNVLSFP Sbjct: 79 FRKWVAATLQ----GRIRKADLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEPFP 134 Query: 96 --CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +LGDIV+ +I EA GK H HL +HG LHLLG++H D ++A ME Sbjct: 135 KALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLTVHGTLHLLGWNHEDHQEADAMEQ 194 Query: 154 LERSILEDLGINDPY 168 LER IL +LGI+DPY Sbjct: 195 LEREILANLGISDPY 209 >gi|167585514|ref|ZP_02377902.1| hypothetical protein BuboB_09264 [Burkholderia ubonensis Bu] Length = 259 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI K ++ I+ F +L++ F Sbjct: 110 PELDLAV-----QYGDEITGDVRKACPKRKLIAEWIAPALFAD---AQLTVRFVGEEEGR 161 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +LN YR D PTNVL+F + ++GD+VL ++E EA GK + H H Sbjct: 162 SLNDSYRHKDYPTNVLTFAY----DEAPDGTVIGDLVLCCPVVEKEAREQGKPLDAHYAH 217 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 218 LLVHGVLHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR 259 >gi|269139974|ref|YP_003296675.1| hypothetical protein ETAE_2629 [Edwardsiella tarda EIB202] gi|267985635|gb|ACY85464.1| hypothetical protein ETAE_2629 [Edwardsiella tarda EIB202] gi|304559807|gb|ADM42471.1| heat shock protein [Edwardsiella tarda FL6-60] Length = 157 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 15/162 (9%) Query: 11 LDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E E E V + + E+++ D Sbjct: 6 LDLQIACVETPGLPAEGDFLRWLEAVLPR------------FRDEAEVTIRLVDEAESHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D+PTNVLSFP F + G +LGD+V+ +++E EA +H H+ Sbjct: 54 LNLTYRGKDRPTNVLSFP--FEAPPGIELPLLGDMVICRQVVEREAQEQNIAPLSHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH+ D++A ME LE I++ LG DPY + Sbjct: 112 VVHGSLHLLGYDHISDEEAEEMESLEADIMQALGYPDPYAAE 153 >gi|262274720|ref|ZP_06052531.1| predicted metal-dependent hydrolase [Grimontia hollisae CIP 101886] gi|262221283|gb|EEY72597.1| predicted metal-dependent hydrolase [Grimontia hollisae CIP 101886] Length = 154 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA +N D + T + F +AV + E+++ D ++L Sbjct: 5 VDLQIATQNT---DNLPTDTQFQQWFEQAVQSF--------REQAEVTIRLVDEEESQSL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G +LGD+V+ +++E EA K+ H H++ Sbjct: 54 NRDYRGKDKPTNVLSFP--FDAPPGIELDLLGDLVICRQVVEKEAEEQNKDLFAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHLLGYDH++D++A ME LE SI+ LG ++PY D Sbjct: 112 VHGSLHLLGYDHINDEEAEEMESLEISIMNALGFDNPYAAD 152 >gi|192359229|ref|YP_001982117.1| hypothetical protein CJA_1637 [Cellvibrio japonicus Ueda107] gi|254800588|sp|B3PER3|RRMF_CELJU RecName: Full=Probable rRNA maturation factor gi|190685394|gb|ACE83072.1| hypothetical protein CJA_1637 [Cellvibrio japonicus Ueda107] Length = 177 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 13/164 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ ++D++I + E H+R + + E+S+ D+ Sbjct: 1 MSKYQIDIEINSASQQLPSEEHIRQWISTALDS-----------QQLDEAEVSVYIVDTD 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN EYR D TNVLSFP +LGD+V+ ++E EA+ K + H Sbjct: 50 EGRDLNREYRERDYATNVLSFPADIPPE--VEIPLLGDLVVCAPVVEHEADEQHKPLDAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H++IHG LHLLGYDH+D+ +A ME LE +L LG DPY+ Sbjct: 108 WAHMLIHGSLHLLGYDHIDNDEAETMEALETQLLARLGYADPYD 151 >gi|188576119|ref|YP_001913048.1| putative metalloprotease [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520571|gb|ACD58516.1| conserved hypothetical protein, putative [Xanthomonas oryzae pv. oryzae PXO99A] Length = 137 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 74/138 (53%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 F K V+ + + +L++ D +LN YRG D TNVLSFP Sbjct: 3 FRKWVAAALK----GRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGLP 58 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G +LGD+V+ ++ EA GK H HL +HG LHLLG+DH DDK+A ME Sbjct: 59 KGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTVHGTLHLLGWDHDDDKEADAMEQ 118 Query: 154 LERSILEDLGINDPYEVD 171 LER IL DLGI+DPY + Sbjct: 119 LEREILADLGIDDPYAGE 136 >gi|71902417|ref|ZP_00684373.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] gi|71727855|gb|EAO30096.1| Protein of unknown function UPF0054 [Xylella fastidiosa Ann-1] Length = 213 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 6/135 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F K V+ + + +L++ D LN+ YR D TNVLSFP Sbjct: 79 FRKWVAATLQ----GRIRKADLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEPFP 134 Query: 96 --CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +LGDIV+ +I EA GK H HL +HG LHLLG++H D ++A ME Sbjct: 135 KALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLTVHGTLHLLGWNHEDHQEADAMEQ 194 Query: 154 LERSILEDLGINDPY 168 LER IL +LGI+DPY Sbjct: 195 LEREILANLGISDPY 209 >gi|89092051|ref|ZP_01165006.1| hypothetical protein MED92_07786 [Oceanospirillum sp. MED92] gi|89083786|gb|EAR63003.1| hypothetical protein MED92_07786 [Oceanospirillum sp. MED92] Length = 151 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 15/160 (9%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D+Q VE E + E ++ + E+ + + LN Sbjct: 6 DIQFEVE-GNLPSESDFQRWVEAALSE------------FRDEGEICIRVVSPEESQELN 52 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR DKPTNVLSFP F +G +LGD+++ E++ EA+ K +H H+++ Sbjct: 53 HTYRDKDKPTNVLSFP--FDIPEGIPIQLLGDLIICAEVVVTEASEQNKALFDHWAHMVV 110 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HG LHL+G+DH+ D +A ME LER IL L I DPY + Sbjct: 111 HGCLHLIGFDHIKDDEAEEMENLERQILASLDIADPYRDE 150 >gi|114706888|ref|ZP_01439788.1| hypothetical protein FP2506_18769 [Fulvimarina pelagi HTCC2506] gi|114537836|gb|EAU40960.1| hypothetical protein FP2506_18769 [Fulvimarina pelagi HTCC2506] Length = 188 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 89/168 (52%), Gaps = 3/168 (1%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 V + + L ++VE+ W + E + + + F K ELS+ + Sbjct: 11 VPETGASWVSLALSVEDDRWEAALGNP---EAFVTATLDAVARRFEFSKPFASELSVTLS 67 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D + +N ++R DKPTNVLSFP +LGD++LAYE EA K F Sbjct: 68 DDETVREINGQWREKDKPTNVLSFPMVDLEPGERPGPLLGDLILAYETCAREAAGEAKPF 127 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 NH HL++HGFLH LGYDH++D +A ME LE SIL LGI DPY+V Sbjct: 128 VNHARHLLVHGFLHCLGYDHIEDDEAEEMEALETSILAGLGIPDPYDV 175 >gi|99080031|ref|YP_612185.1| hypothetical protein TM1040_0190 [Ruegeria sp. TM1040] gi|99036311|gb|ABF62923.1| protein of unknown function UPF0054 [Ruegeria sp. TM1040] Length = 194 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 18/174 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 R+ L + +E+A W D L + + ++ L +++ E++++ D RI Sbjct: 24 RMILDVVIEDARW-DAAALEKQAQEAVSATLAYL-----ELEDEDWEVTVLGCDDARIAD 77 Query: 70 LNFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANV 117 LN E+R KPTNVLS+P D LGDI ++Y+ EAN+ Sbjct: 78 LNAEFREKPKPTNVLSWPAQELAAAQDGGQPTPPEVDFMGDAALGDIAISYDTCVKEANL 137 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E+H+ HL++HG LHLLGYDH+ D DA +ME LE IL LGI DPY ++ Sbjct: 138 AHKSREDHVRHLLVHGTLHLLGYDHIRDGDATIMETLEVGILGKLGIPDPYIIE 191 >gi|317491141|ref|ZP_07949577.1| hypothetical protein HMPREF0864_00340 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920688|gb|EFV42011.1| hypothetical protein HMPREF0864_00340 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 164 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 88/170 (51%), Gaps = 15/170 (8%) Query: 3 VKKVNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVF 61 + ++ LDLQIA EN E R E V K + E+++ Sbjct: 5 QQNMSNVILDLQIACENTEGLPAEADFRLWLEAVLPK------------FQEEAEVTIRL 52 Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 D LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA Sbjct: 53 VDEAESHELNMTYRGKDKPTNVLSFP--FEAPPGIELPLLGDMIICRQVVEAEAKEQEIT 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H H+++HG LHLLGYDH+ D++A ME LE I+++LG DPY + Sbjct: 111 LLSHWAHMVVHGSLHLLGYDHIIDEEAEEMEALEAEIMQELGYPDPYAAE 160 >gi|330811910|ref|YP_004356372.1| hypothetical protein PSEBR_a4946 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380018|gb|AEA71368.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 152 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E+A E R CE+ + ++ EL++ D Sbjct: 3 ELDLQVACEHAA-PSEAQFRQWCELALRQRSAD------------SELTIRLVDEPEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D TNVLSFP A + +LGD+V+ ++E EA K E H HL Sbjct: 50 LNHTWRQKDYATNVLSFP-ADVPDELLDIPLLGDLVICVPVVEREAAEQDKTPEAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH++D +A ME LER++L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIEDDEAEEMEALERTLLAELGHPDPYAGD 150 >gi|109898525|ref|YP_661780.1| hypothetical protein Patl_2208 [Pseudoalteromonas atlantica T6c] gi|123064566|sp|Q15TR2|RRMF_PSEA6 RecName: Full=Probable rRNA maturation factor gi|109700806|gb|ABG40726.1| protein of unknown function UPF0054 [Pseudoalteromonas atlantica T6c] Length = 152 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 13/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQ+A + A + V A + + EL++ ++ + L Sbjct: 5 VDLQVASDAANLPSADDFQRWLNAVLA-----------HQQLSEHELTVRIVETQESQEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + G S +LGD+V+ +++ EA+ K+ +H H+I Sbjct: 54 NLTYRGKDKPTNVLSFP--FEAPPGLSLNLLGDLVVCADVVAHEADEQHKKLHHHWAHMI 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HG LHLLG+DH++D +A ME LE IL+ I+DPY+ Sbjct: 112 VHGALHLLGFDHINDDEAKEMEALEVDILKQFSIDDPYQD 151 >gi|194439895|ref|ZP_03071958.1| conserved hypothetical protein [Escherichia coli 101-1] gi|253774357|ref|YP_003037188.1| metalloprotease [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160738|ref|YP_003043846.1| putative metalloprotease [Escherichia coli B str. REL606] gi|300907838|ref|ZP_07125454.1| hypothetical protein HMPREF9536_05750 [Escherichia coli MS 84-1] gi|300931596|ref|ZP_07146908.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 187-1] gi|301302142|ref|ZP_07208275.1| hypothetical protein HMPREF9347_00710 [Escherichia coli MS 124-1] gi|194421189|gb|EDX37213.1| conserved hypothetical protein [Escherichia coli 101-1] gi|242376433|emb|CAQ31135.1| conserved protein involved in translation [Escherichia coli BL21(DE3)] gi|253325401|gb|ACT30003.1| protein of unknown function UPF0054 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972639|gb|ACT38310.1| hypothetical protein ECB_00627 [Escherichia coli B str. REL606] gi|253976833|gb|ACT42503.1| hypothetical protein ECD_00627 [Escherichia coli BL21(DE3)] gi|300400470|gb|EFJ84008.1| hypothetical protein HMPREF9536_05750 [Escherichia coli MS 84-1] gi|300460620|gb|EFK24113.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 187-1] gi|300842694|gb|EFK70454.1| hypothetical protein HMPREF9347_00710 [Escherichia coli MS 124-1] gi|315255034|gb|EFU35002.1| putative metalloprotease YbeY [Escherichia coli MS 85-1] gi|323963227|gb|EGB58795.1| hypothetical protein ERGG_00413 [Escherichia coli H489] gi|332342006|gb|AEE55340.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 155 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQKESEVTIRVVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|221134936|ref|ZP_03561239.1| hypothetical protein GHTCC_08396 [Glaciecola sp. HTCC2999] Length = 162 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 98/162 (60%), Gaps = 6/162 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+Q A+ E + L + + K V+++++ +++ EL++ F DS ++ Sbjct: 7 DIDIQWAISEPSQLSETQAQ-LSDDIIIKTVTSVLNNHN---DSVGELTIRFVDSVESQS 62 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR DKPTNVLSFP D S +LGD+++ +++ EA K +H HL Sbjct: 63 LNHTYRDKDKPTNVLSFPAEI--PDFIESTLLGDLIICDAVVKTEAKEQQKSLIHHYQHL 120 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 I+HG LHLLG+DH+++ +A VME E ++L +LGI+DPY+VD Sbjct: 121 IVHGTLHLLGFDHIENNEAVVMENHEIAVLNELGIDDPYQVD 162 >gi|300113053|ref|YP_003759628.1| hypothetical protein Nwat_0337 [Nitrosococcus watsonii C-113] gi|299538990|gb|ADJ27307.1| protein of unknown function UPF0054 [Nitrosococcus watsonii C-113] Length = 153 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 70/136 (51%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + + E+++ TD + LN YR + TN+LSFP S Sbjct: 16 APLQADFQRWVEAALLNQSKAGEVTIRVTDENEAAELNRRYRRKEGATNILSFPFEIPSC 75 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +LGD+++ ++ EA K+ ++H HL++HG LHLLG+DH + +A ME Sbjct: 76 VPFDIPLLGDLIICAPVVAREALEQAKKEQDHWAHLVVHGVLHLLGFDHQQEVEAQQMEA 135 Query: 154 LERSILEDLGINDPYE 169 LE +ILE LG +DPYE Sbjct: 136 LEVTILESLGYSDPYE 151 >gi|253999827|ref|YP_003051890.1| hypothetical protein Msip34_2121 [Methylovorus sp. SIP3-4] gi|253986506|gb|ACT51363.1| protein of unknown function UPF0054 [Methylovorus sp. SIP3-4] Length = 155 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 76/166 (45%), Gaps = 23/166 (13%) Query: 8 LPR--LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +PR +D+Q+A E A + R EL+L D Sbjct: 1 MPRLAMDVQVASEAANIPADKLFRKWARATLRV---------------DTELALRIVDED 45 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG D TNVL+FP ++GDI+L ++ EA GK E H Sbjct: 46 EGRALNRDYRGKDYATNVLTFPLTE------EPHLMGDIILCAPVVAREAAEQGKPIEAH 99 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL +HG LHL GYDH + A +MEGLE I+ LG +DPY + Sbjct: 100 YAHLTVHGVLHLHGYDHETEPQAELMEGLETEIVTKLGYSDPYAAE 145 >gi|332140831|ref|YP_004426569.1| hypothetical protein MADE_1007145 [Alteromonas macleodii str. 'Deep ecotype'] gi|238693281|sp|B4S0S0|RRMF_ALTMD RecName: Full=Probable rRNA maturation factor gi|327550853|gb|AEA97571.1| hypothetical protein MADE_1007145 [Alteromonas macleodii str. 'Deep ecotype'] Length = 158 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 4/157 (2%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I V+ A G+E+ + + +N + K + + E+++ FTD ++LN EY Sbjct: 5 IDVQQAFEGEEVISIDIPSPAELELWANAVLKYEGLSDQ--EVTIRFTDEAESQSLNSEY 62 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 RG KPTNVLSFP F + G +LGD+V+ +I EA K+ +H H+ +HG Sbjct: 63 RGKHKPTNVLSFP--FEAPPGIEINLLGDLVICAPVISREAEEQDKQVSDHYAHMTVHGL 120 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LHL+GYDH+DD +A MEG E IL LGI++PY+ D Sbjct: 121 LHLMGYDHIDDAEAEEMEGKEIDILAQLGIDNPYDAD 157 >gi|292493859|ref|YP_003529298.1| hypothetical protein Nhal_3899 [Nitrosococcus halophilus Nc4] gi|291582454|gb|ADE16911.1| protein of unknown function UPF0054 [Nitrosococcus halophilus Nc4] Length = 153 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 8/159 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + V+ A+ I L +V F + V ++ + E+++ D + L Sbjct: 1 MSIAVQVQYAVSRTGIPL----QVDFQRWVEAVL----VNQSKEGEVTIRIADEAEVAEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N+ YR + TNVLSFP ++ +LGD+V+ ++ EA KE H HL+ Sbjct: 53 NWRYRYKEGATNVLSFPFELSAPLPFQISLLGDLVICAPVVAREALEHAKEERAHWAHLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLG+DH + +A ME +E +IL+ LG +PYE Sbjct: 113 VHGVLHLLGFDHQQEAEAQQMEAMEITILKSLGYPNPYE 151 >gi|288959690|ref|YP_003450031.1| metal-dependent hydrolase [Azospirillum sp. B510] gi|288911998|dbj|BAI73487.1| metal-dependent hydrolase [Azospirillum sp. B510] Length = 168 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ ++ E W + E + +A ++ Y +E ELS+V D + L Sbjct: 5 VDITVSREAGDWAGD------AEWLAERAALAALAATYDDEEGPAELSVVLADDALVHQL 58 Query: 71 NFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N +YRG DKPTNVLSF + +MLGD++LA+E + EA+ GK E+HL Sbjct: 59 NRDYRGKDKPTNVLSFALTEAEEPEPEEGMPVMLGDVILAFETVVREASEQGKSLEDHLT 118 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL++HG LHLLGYDH D +A ME LE +L GI DPY + Sbjct: 119 HLVMHGVLHLLGYDHETDDEAEEMEALETRLLASFGIADPYAAN 162 >gi|170703554|ref|ZP_02894307.1| protein of unknown function UPF0054 [Burkholderia ambifaria IOP40-10] gi|170131542|gb|EDT00117.1| protein of unknown function UPF0054 [Burkholderia ambifaria IOP40-10] Length = 261 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+L ++V+ +GDEI K ++ I F + +L++ F T Sbjct: 111 ELELDLSVQ---YGDEITGDVRKACPKRKLIAEWIEPALF---SSAQLTVRFVGEEEGRT 164 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F ++GD+VL ++E EA GK H HL Sbjct: 165 LNDGYRHKDYPTNVLTFAY----DPAPDGTVIGDLVLCCPVVEKEAQEQGKPLAAHYAHL 220 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH ++DA ME LE +IL LG +PY+ Sbjct: 221 LVHGALHAQGYDHETSEEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|165976379|ref|YP_001651972.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251112|ref|ZP_07337298.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|165876480|gb|ABY69528.1| hypothetical protein APJL_0970 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650122|gb|EFL80292.1| putative metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 163 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 8/163 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN+ +L +L ++ + L + E+++ D Sbjct: 1 MTTPMIDLQIACENSE-----NLPSLEQLTLWVQ-TALAYEAQTEDFPETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL IHG LHLLGYDH++D++A MEGLE I++ LG DPY Sbjct: 113 WAHLAIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPY 155 >gi|300927234|ref|ZP_07142966.1| hypothetical protein HMPREF9548_05209 [Escherichia coli MS 182-1] gi|301329191|ref|ZP_07222182.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 78-1] gi|300416800|gb|EFK00111.1| hypothetical protein HMPREF9548_05209 [Escherichia coli MS 182-1] gi|300844479|gb|EFK72239.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 78-1] Length = 155 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 91/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A EN E E F ++ +I + + E+++ D+ Sbjct: 1 MSQVILDLQLACENNSGLPE-------ESQFQTWLNAVIPQ----FQEESEVTIRVVDTA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H Sbjct: 50 ESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 108 WAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|240949197|ref|ZP_04753541.1| putative metalloprotease [Actinobacillus minor NM305] gi|240296313|gb|EER46957.1| putative metalloprotease [Actinobacillus minor NM305] Length = 163 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 8/163 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + +P +DLQIA EN+ +L +L ++ + L + E+++ D Sbjct: 1 MTIPMIDLQIACENSE-----NLPSLEQLTLWVK-TALAYEAQTEDFPETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL IHG LHLLGYDH++D++A MEGLE I++ LG DPY Sbjct: 113 WAHLAIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPY 155 >gi|238791655|ref|ZP_04635293.1| metalloprotease [Yersinia intermedia ATCC 29909] gi|238729271|gb|EEQ20787.1| metalloprotease [Yersinia intermedia ATCC 29909] Length = 120 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 2/115 (1%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 + E+++ D LN YRG DKPTNVLSFP F + +LGD+++ +++E Sbjct: 1 MAEVTVRLVDEAESHELNLTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQ 58 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 59 EAIEQEKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 113 >gi|254475005|ref|ZP_05088391.1| diacyglycerol kinase [Ruegeria sp. R11] gi|214029248|gb|EEB70083.1| diacyglycerol kinase [Ruegeria sp. R11] Length = 189 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 93/173 (53%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I++E W L T E + +A ++S + + E+S++ D RI L Sbjct: 14 MGLDISIEEDRW-----LETDLEPLVIEATEAVLS-HFRLDPEACEISVLACDDARIAVL 67 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N ++R KPTNVLS+P +D + LGDI +AYE EA Sbjct: 68 NEDFRQKAKPTNVLSWPAEELAAEEPGGTPMAPEADFTGEIPLGDIAIAYETCAREAQEA 127 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HLI+HG LHLLGYDH+ D DA +MEGLE IL +GI+DPY V+ Sbjct: 128 GKPLADHLRHLIVHGLLHLLGYDHIRDPDATLMEGLEVEILGKMGIDDPYTVE 180 >gi|28199652|ref|NP_779966.1| putative metalloprotease [Xylella fastidiosa Temecula1] gi|170731019|ref|YP_001776452.1| putative metalloprotease [Xylella fastidiosa M12] gi|182682398|ref|YP_001830558.1| putative metalloprotease [Xylella fastidiosa M23] gi|32130366|sp|Q87AP2|RRMF_XYLFT RecName: Full=Probable rRNA maturation factor gi|238687948|sp|B0U4P3|RRMF_XYLFM RecName: Full=Probable rRNA maturation factor gi|238691098|sp|B2I8U3|RRMF_XYLF2 RecName: Full=Probable rRNA maturation factor gi|28057767|gb|AAO29615.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|167965812|gb|ACA12822.1| conserved hypothetical protein [Xylella fastidiosa M12] gi|182632508|gb|ACB93284.1| protein of unknown function UPF0054 [Xylella fastidiosa M23] gi|307578678|gb|ADN62647.1| putative metalloprotease [Xylella fastidiosa subsp. fastidiosa GB514] Length = 161 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 6/135 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F K V+ + + +L++ D LN+ YR D TNVLSFP Sbjct: 27 FRKWVAATLQ----GRIRKADLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEPFP 82 Query: 96 --CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +LGDIV+ +I EA GK H HL +HG LHLLG++H D ++A ME Sbjct: 83 KALKIPLLGDIVMCAPVIAREATEQGKSLSAHYAHLTVHGTLHLLGWNHEDHQEADAMEQ 142 Query: 154 LERSILEDLGINDPY 168 LER IL +LGI+DPY Sbjct: 143 LEREILANLGISDPY 157 >gi|313201801|ref|YP_004040459.1| hypothetical protein MPQ_2072 [Methylovorus sp. MP688] gi|312441117|gb|ADQ85223.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 150 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 73/161 (45%), Gaps = 21/161 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+Q+A E A + R EL+L D L Sbjct: 1 MDVQVASEAANIPADKLFRKWARATLRV---------------DTELALRIVDEDEGRAL 45 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG D TNVL+FP ++GDI+L ++ EA GK E H HL Sbjct: 46 NRDYRGKDYATNVLTFPLTE------EPHLMGDIILCAPVVAREAAEQGKPIEAHYAHLT 99 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HG LHL GYDH + A +MEGLE I+ LG +DPY + Sbjct: 100 VHGVLHLHGYDHETEPQAELMEGLETEIVTKLGYSDPYAAE 140 >gi|322833886|ref|YP_004213913.1| hypothetical protein Rahaq_3192 [Rahnella sp. Y9602] gi|321169087|gb|ADW74786.1| protein of unknown function UPF0054 [Rahnella sp. Y9602] Length = 157 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 +N LDLQIA E+A E +T E V + + E+++ D Sbjct: 1 MNTVILDLQIACEDAAGLPSENDFQTWLEAVLPQ------------FQEESEVTIRLVDI 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG+DKPTNVLSFP F + G +LGD+++ +++E EA KE Sbjct: 49 PESHELNMTYRGMDKPTNVLSFP--FEAPPGMEMPLLGDLIICRQVVEKEAKEQDKELLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H++IHG LHLLGYDH+ D++A ME +E I++ LG DPY Sbjct: 107 HWAHMVIHGSLHLLGYDHIVDEEAEEMESIETEIMQGLGYPDPY 150 >gi|258511950|ref|YP_003185384.1| hypothetical protein Aaci_1983 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478676|gb|ACV58995.1| protein of unknown function UPF0054 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 157 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 11/163 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N +D+ VE L + E V A + +G E+S++F D Sbjct: 1 MNRLSIDVTCEVEWPLPPPHGDAQAFVERVLEAAAERIGVQG--------EVSVLFVDDD 52 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFAS---SDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 I LN YR +D+PT+VLSFP MLGDIV++ + +A G Sbjct: 53 AIHELNRTYRQVDRPTDVLSFPMNEGEALADPDDVEPMLGDIVVSVDRAREQAEAYGHSL 112 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L++HGFLHL GYDH D+ M GL+ IL+ +G+ Sbjct: 113 EREVAFLLVHGFLHLNGYDHEDEAGEREMFGLQEEILQGIGLA 155 >gi|187730605|ref|YP_001879332.1| putative metalloprotease [Shigella boydii CDC 3083-94] gi|238691682|sp|B2TU61|RRMF_SHIB3 RecName: Full=Probable rRNA maturation factor YbeY gi|187427597|gb|ACD06871.1| conserved hypothetical protein [Shigella boydii CDC 3083-94] Length = 155 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETKIMLALGYEDPYIAE 153 >gi|194434467|ref|ZP_03066728.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|194417318|gb|EDX33426.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|320178450|gb|EFW53418.1| putative metalloprotease [Shigella boydii ATCC 9905] gi|332094331|gb|EGI99382.1| hypothetical protein SB521682_0667 [Shigella boydii 5216-82] gi|332096773|gb|EGJ01763.1| hypothetical protein SD15574_0958 [Shigella dysenteriae 155-74] Length = 155 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTVRVVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|197335301|ref|YP_002155519.1| putative metalloprotease [Vibrio fischeri MJ11] gi|226702102|sp|B5FBL1|RRMF_VIBFM RecName: Full=Probable rRNA maturation factor gi|197316791|gb|ACH66238.1| putative metalloprotease [Vibrio fischeri MJ11] Length = 153 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 79/163 (48%), Gaps = 15/163 (9%) Query: 10 RLDLQIAVENA-LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LDLQIA EN E L T V + + EL++ D Sbjct: 4 ELDLQIACENENGLPSEKDLMTWLNAVIPQ------------FQPQAELTIRIVDEKESH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG DKPTNVLSFP L +++ +++E EA K H H Sbjct: 52 ELNHEYRGKDKPTNVLSFPFEAPPGLELDLLGD--LIICRQVVEEEAIEQNKPLLAHWAH 109 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE +++ +G DPY + Sbjct: 110 MVVHGSLHLLGYDHIEDDEAEEMESLETELMQGMGFEDPYIAE 152 >gi|300692458|ref|YP_003753453.1| metalloprotease [Ralstonia solanacearum PSI07] gi|299079518|emb|CBJ52196.1| Putative metalloprotease [Ralstonia solanacearum PSI07] Length = 255 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 L L + V++ GDE+ K + I+ F +L++ F Sbjct: 100 AGAEMLTLDLTVQH---GDELKAAARKACPKQKDIEAWIAPALFAD---AQLNVRFVGEE 153 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YR D TNVL+F + D S+ DIVL ++E EA GK H Sbjct: 154 EGRTLNRTYRDKDYATNVLTFSYSETEDDPVSA----DIVLCCPVVEKEAKDQGKPLRAH 209 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LH GYDH D +A MEGLE +L LG DPY Sbjct: 210 YAHLIVHGALHAQGYDHEDPAEAKEMEGLETEVLAGLGFPDPYAD 254 >gi|84687997|ref|ZP_01015860.1| hypothetical protein 1099457000237_RB2654_18208 [Maritimibacter alkaliphilus HTCC2654] gi|84663978|gb|EAQ10479.1| hypothetical protein RB2654_18208 [Rhodobacterales bacterium HTCC2654] Length = 162 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 63/165 (38%), Positives = 87/165 (52%), Gaps = 15/165 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ W + L L E A ++ L G E++L+ D RI L Sbjct: 1 MIVDVVYEDDRWV-ALGLEALAETACAATLAKLGIAG-------AEIALLACDDDRIAAL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 N E+R PTNVLS+P+ + LGDI +AY+ EA GK Sbjct: 53 NTEFRDKPTPTNVLSWPSEERGADQPGGDPYPPEDMELGDIAIAYDTCAREAAEAGKPMV 112 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HL++HG LHLLGYDH+DDKDA +MEGLE IL +G+ DPY Sbjct: 113 DHVTHLVVHGTLHLLGYDHIDDKDAALMEGLETEILGKMGLADPY 157 >gi|118590491|ref|ZP_01547893.1| hypothetical protein SIAM614_02911 [Stappia aggregata IAM 12614] gi|118436954|gb|EAV43593.1| hypothetical protein SIAM614_02911 [Stappia aggregata IAM 12614] Length = 189 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 91/158 (57%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + +++E W E L E + AKAV+ + E+SL+FTD I LN Sbjct: 29 IDLSIEAGDWPAEAQL----EAITAKAVAAAFAGADLEVLEGTEVSLLFTDDASIRQLNA 84 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R DK TNVLSFP + D +LGDIV AYE + EA LG EF +HL HL +H Sbjct: 85 KWRDKDKATNVLSFPGSDPQGD-VYGPLLGDIVFAYETVAAEAADLGIEFSDHLTHLTVH 143 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G LHL YDH + ++A +ME LE++IL LGI+DPY Sbjct: 144 GLLHLFDYDHQESEEAELMESLEKAILASLGIDDPYAD 181 >gi|171321299|ref|ZP_02910261.1| protein of unknown function UPF0054 [Burkholderia ambifaria MEX-5] gi|171093426|gb|EDT38609.1| protein of unknown function UPF0054 [Burkholderia ambifaria MEX-5] Length = 261 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 12/166 (7%) Query: 6 VNLPR-LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 N PR L+ ++V+ +GDEI K ++ I F + +L++ F Sbjct: 106 ANEPRELEFDLSVQ---YGDEITGDVRKACPKRKLIAEWIEPALF---SSAQLTVRFVGE 159 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 TLN YR D PTNVL+F ++GD+VL ++E EA+ GK Sbjct: 160 EEGRTLNDGYRHKDYPTNVLTFAY----DPAPDGTVIGDLVLCCPVVEKEAHEQGKPLAA 215 Query: 125 HLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 H HL++HG LH GYDH D+DA ME LE +IL LG +PY+ Sbjct: 216 HYAHLLVHGALHAQGYDHETSDEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|52081079|ref|YP_079870.1| putative metalloprotease [Bacillus licheniformis ATCC 14580] gi|52786458|ref|YP_092287.1| putative metalloprotease [Bacillus licheniformis ATCC 14580] gi|319644963|ref|ZP_07999196.1| metalloprotease [Bacillus sp. BT1B_CT2] gi|59799095|sp|Q65H70|RRMF_BACLD RecName: Full=Probable rRNA maturation factor gi|52004290|gb|AAU24232.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52348960|gb|AAU41594.1| YqfG [Bacillus licheniformis ATCC 14580] gi|317392772|gb|EFV73566.1| metalloprotease [Bacillus sp. BT1B_CT2] Length = 158 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L I E ++ + FA A + + E+S+ ++ I+ +N Sbjct: 5 LDITDETGRVPEDRLAEIEKLLQFAAAEEGV--------ADGAEVSVTIVNNEEIQKINK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHL 126 EYRG D PT+V+SF +LGDI+++ + +A G L Sbjct: 57 EYRGKDYPTDVISFALEEDGEGEVEIIGADMPPVLGDIIISVDKAREQAEEYGHSLMREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHLLGYDH+ +++ M ++ IL G++ Sbjct: 117 GFLTVHGFLHLLGYDHMTEEEEKEMFTKQKEILNRYGLS 155 >gi|329296078|ref|ZP_08253414.1| hypothetical protein Pstas_04461 [Plautia stali symbiont] Length = 157 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 13/163 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A DE L E F + + ++ + E+++ D Sbjct: 1 MSTVILDLQLAC-----ADENGLP--AEAAFQRWLEAAVTP----FQPESEVTIRLVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA GK E H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAAEQGKSPEAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+++HG LHLLGYDH++D++A ME LE I+ LG DPY Sbjct: 108 WAHMVVHGTLHLLGYDHIEDEEAEEMEALETEIMLALGYPDPY 150 >gi|85713015|ref|ZP_01044053.1| Predicted metal-dependent hydrolase [Idiomarina baltica OS145] gi|85693184|gb|EAQ31144.1| Predicted metal-dependent hydrolase [Idiomarina baltica OS145] Length = 156 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 12/161 (7%) Query: 12 DLQIAVENA-LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 D Q+A E A + + E A A EL++ D +L Sbjct: 6 DYQVACETASELPQQADIELWVETALALA---------GYDNTEAELTVRVVDPAEGRSL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+R D TNVLSFP F + +LGD+V+ +++E EA+ K +H H++ Sbjct: 57 NHEFRSKDYATNVLSFP--FEAPIEMPIPLLGDLVICAQVVEREADEQQKPLMHHWTHMV 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH++D +A ME +E+ L L I DPY+++ Sbjct: 115 IHGTLHLLGYDHIEDAEAEHMERIEKDALARLDIPDPYQIN 155 >gi|223041409|ref|ZP_03611612.1| putative metal-dependent hydrolase [Actinobacillus minor 202] gi|190692223|gb|ACE87879.1| putative metal-dependent hydrolase [Actinobacillus minor 202] Length = 163 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 66/164 (40%), Positives = 92/164 (56%), Gaps = 10/164 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDS 64 + P +DLQIA EN+ +L +L + F V ++ +E E+++ D Sbjct: 1 MTTPIIDLQIACENSE-----NLPSLEQ--FMLWVQTALAYEAQTEEFPETEMTIRIVDE 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+ Sbjct: 54 AESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLES 111 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHLLGYDH++D++A MEGLE I++ LG DPY Sbjct: 112 HWAHLAIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPY 155 >gi|16128642|ref|NP_415192.1| metal-binding heat shock protein required for rRNA maturation [Escherichia coli str. K-12 substr. MG1655] gi|24112043|ref|NP_706553.1| putative metalloprotease [Shigella flexneri 2a str. 301] gi|30062154|ref|NP_836325.1| putative metalloprotease [Shigella flexneri 2a str. 2457T] gi|74311195|ref|YP_309614.1| putative metalloprotease [Shigella sonnei Ss046] gi|82543103|ref|YP_407050.1| metalloprotease [Shigella boydii Sb227] gi|89107528|ref|AP_001308.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|91209702|ref|YP_539688.1| putative metalloprotease [Escherichia coli UTI89] gi|110804693|ref|YP_688213.1| putative metalloprotease [Shigella flexneri 5 str. 8401] gi|157156781|ref|YP_001461830.1| putative metalloprotease [Escherichia coli E24377A] gi|157160147|ref|YP_001457465.1| putative metalloprotease [Escherichia coli HS] gi|170020984|ref|YP_001725938.1| putative metalloprotease [Escherichia coli ATCC 8739] gi|170080339|ref|YP_001729659.1| hypothetical protein ECDH10B_0728 [Escherichia coli str. K-12 substr. DH10B] gi|188492875|ref|ZP_03000145.1| conserved hypothetical protein [Escherichia coli 53638] gi|191168675|ref|ZP_03030455.1| conserved hypothetical protein [Escherichia coli B7A] gi|193063449|ref|ZP_03044539.1| conserved hypothetical protein [Escherichia coli E22] gi|193069038|ref|ZP_03049996.1| conserved hypothetical protein [Escherichia coli E110019] gi|194429738|ref|ZP_03062254.1| conserved hypothetical protein [Escherichia coli B171] gi|209917921|ref|YP_002292005.1| putative metalloprotease [Escherichia coli SE11] gi|218549764|ref|YP_002383555.1| metalloprotease [Escherichia fergusonii ATCC 35469] gi|218553201|ref|YP_002386114.1| putative metalloprotease [Escherichia coli IAI1] gi|218557590|ref|YP_002390503.1| metalloprotease [Escherichia coli S88] gi|218694098|ref|YP_002401765.1| putative metalloprotease [Escherichia coli 55989] gi|237707372|ref|ZP_04537853.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|238899936|ref|YP_002925732.1| hypothetical protein BWG_0530 [Escherichia coli BW2952] gi|256020611|ref|ZP_05434476.1| putative metalloprotease [Shigella sp. D9] gi|256023730|ref|ZP_05437595.1| putative metalloprotease [Escherichia sp. 4_1_40B] gi|260842885|ref|YP_003220663.1| hypothetical protein ECO103_0666 [Escherichia coli O103:H2 str. 12009] gi|260853910|ref|YP_003227801.1| hypothetical protein ECO26_0734 [Escherichia coli O26:H11 str. 11368] gi|260866807|ref|YP_003233209.1| hypothetical protein ECO111_0689 [Escherichia coli O111:H- str. 11128] gi|291281608|ref|YP_003498426.1| hypothetical protein G2583_0822 [Escherichia coli O55:H7 str. CB9615] gi|293413953|ref|ZP_06656602.1| metalloprotease ybeY [Escherichia coli B185] gi|293418772|ref|ZP_06661207.1| metalloprotease ybeY [Escherichia coli B088] gi|300817820|ref|ZP_07098034.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 107-1] gi|300823023|ref|ZP_07103157.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 119-7] gi|300937872|ref|ZP_07152665.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 21-1] gi|300951161|ref|ZP_07165024.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 116-1] gi|300959235|ref|ZP_07171310.1| hypothetical protein HMPREF9547_04899 [Escherichia coli MS 175-1] gi|301028857|ref|ZP_07192033.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 196-1] gi|301643925|ref|ZP_07243952.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 146-1] gi|307137275|ref|ZP_07496631.1| putative metalloprotease [Escherichia coli H736] gi|307312624|ref|ZP_07592256.1| protein of unknown function UPF0054 [Escherichia coli W] gi|309795472|ref|ZP_07689889.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 145-7] gi|312970736|ref|ZP_07784917.1| uncharacterized family UPF0054 family protein [Escherichia coli 1827-70] gi|331641162|ref|ZP_08342297.1| putative metalloprotease YbeY [Escherichia coli H736] gi|331651672|ref|ZP_08352691.1| putative metalloprotease YbeY [Escherichia coli M718] gi|331667014|ref|ZP_08367888.1| putative metalloprotease YbeY [Escherichia coli TA271] gi|331672192|ref|ZP_08372984.1| putative metalloprotease YbeY [Escherichia coli TA280] gi|331676321|ref|ZP_08377033.1| putative metalloprotease YbeY [Escherichia coli H591] gi|332281801|ref|ZP_08394214.1| conserved hypothetical protein [Shigella sp. D9] gi|62906654|sp|P0A898|RRMF_ECOLI RecName: Full=Probable rRNA maturation factor YbeY gi|62906655|sp|P0A899|RRMF_SHIFL RecName: Full=Probable rRNA maturation factor YbeY gi|122424610|sp|Q1REQ7|RRMF_ECOUT RecName: Full=Probable rRNA maturation factor YbeY gi|122957569|sp|Q0T6R8|RRMF_SHIF8 RecName: Full=Probable rRNA maturation factor YbeY gi|123560316|sp|Q324N6|RRMF_SHIBS RecName: Full=Probable rRNA maturation factor YbeY gi|123617771|sp|Q3Z4D3|RRMF_SHISS RecName: Full=Probable rRNA maturation factor YbeY gi|166919068|sp|A7ZJ51|RRMF_ECO24 RecName: Full=Probable rRNA maturation factor YbeY gi|166919069|sp|A7ZXS8|RRMF_ECOHS RecName: Full=Probable rRNA maturation factor YbeY gi|189041073|sp|B1IYE9|RRMF_ECOLC RecName: Full=Probable rRNA maturation factor YbeY gi|226704001|sp|B6HYM8|RRMF_ECOSE RecName: Full=Probable rRNA maturation factor YbeY gi|226710475|sp|B7MFS5|RRMF_ECO45 RecName: Full=Probable rRNA maturation factor YbeY gi|226710477|sp|B7M5I6|RRMF_ECO8A RecName: Full=Probable rRNA maturation factor YbeY gi|226710480|sp|B7LKU5|RRMF_ESCF3 RecName: Full=Probable rRNA maturation factor YbeY gi|229485211|sp|B1X654|RRMF_ECODH RecName: Full=Probable rRNA maturation factor YbeY gi|254807365|sp|B7L9K6|RRMF_ECO55 RecName: Full=Probable rRNA maturation factor YbeY gi|259710207|sp|C4ZWE6|RRMF_ECOBW RecName: Full=Probable rRNA maturation factor YbeY gi|56554600|pdb|1XM5|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|56554601|pdb|1XM5|B Chain B, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|56554602|pdb|1XM5|C Chain C, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|56554603|pdb|1XM5|D Chain D, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 gi|1778578|gb|AAB40861.1| HI0004 homolog [Escherichia coli] gi|1786880|gb|AAC73760.1| metal-binding heat shock protein required for rRNA maturation [Escherichia coli str. K-12 substr. MG1655] gi|4062278|dbj|BAA35314.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|24050866|gb|AAN42260.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30040399|gb|AAP16131.1| hypothetical protein S0645 [Shigella flexneri 2a str. 2457T] gi|73854672|gb|AAZ87379.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81244514|gb|ABB65222.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91071276|gb|ABE06157.1| hypothetical protein UTI89_C0657 [Escherichia coli UTI89] gi|110614241|gb|ABF02908.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|157065827|gb|ABV05082.1| conserved hypothetical protein [Escherichia coli HS] gi|157078811|gb|ABV18519.1| conserved hypothetical protein [Escherichia coli E24377A] gi|169755912|gb|ACA78611.1| protein of unknown function UPF0054 [Escherichia coli ATCC 8739] gi|169888174|gb|ACB01881.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|188488074|gb|EDU63177.1| conserved hypothetical protein [Escherichia coli 53638] gi|190901267|gb|EDV61036.1| conserved hypothetical protein [Escherichia coli B7A] gi|192931033|gb|EDV83637.1| conserved hypothetical protein [Escherichia coli E22] gi|192957582|gb|EDV88027.1| conserved hypothetical protein [Escherichia coli E110019] gi|194412219|gb|EDX28525.1| conserved hypothetical protein [Escherichia coli B171] gi|209776878|gb|ACI86751.1| hypothetical protein ECs0697 [Escherichia coli] gi|209776884|gb|ACI86754.1| hypothetical protein ECs0697 [Escherichia coli] gi|209911180|dbj|BAG76254.1| conserved hypothetical protein [Escherichia coli SE11] gi|218350830|emb|CAU96526.1| putative metal-dependent hydrolase [Escherichia coli 55989] gi|218357305|emb|CAQ89940.1| putative metal-dependent hydrolase [Escherichia fergusonii ATCC 35469] gi|218359969|emb|CAQ97513.1| putative metal-dependent hydrolase [Escherichia coli IAI1] gi|218364359|emb|CAR02034.1| putative metal-dependent hydrolase [Escherichia coli S88] gi|226898582|gb|EEH84841.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|238860283|gb|ACR62281.1| conserved protein [Escherichia coli BW2952] gi|257752559|dbj|BAI24061.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257758032|dbj|BAI29529.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257763163|dbj|BAI34658.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|260450174|gb|ACX40596.1| protein of unknown function UPF0054 [Escherichia coli DH1] gi|281600007|gb|ADA72991.1| putative metal-dependent hydrolase [Shigella flexneri 2002017] gi|284920459|emb|CBG33520.1| conserved hypothetical protein [Escherichia coli 042] gi|290761481|gb|ADD55442.1| conserved hypothetical protein [Escherichia coli O55:H7 str. CB9615] gi|291325300|gb|EFE64715.1| metalloprotease ybeY [Escherichia coli B088] gi|291434011|gb|EFF06984.1| metalloprotease ybeY [Escherichia coli B185] gi|294491060|gb|ADE89816.1| conserved hypothetical protein [Escherichia coli IHE3034] gi|299878162|gb|EFI86373.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 196-1] gi|300314164|gb|EFJ63948.1| hypothetical protein HMPREF9547_04899 [Escherichia coli MS 175-1] gi|300449564|gb|EFK13184.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 116-1] gi|300457115|gb|EFK20608.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 21-1] gi|300524372|gb|EFK45441.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 119-7] gi|300529517|gb|EFK50579.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 107-1] gi|301077695|gb|EFK92501.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 146-1] gi|306907326|gb|EFN37831.1| protein of unknown function UPF0054 [Escherichia coli W] gi|307627910|gb|ADN72214.1| putative metalloprotease [Escherichia coli UM146] gi|308120847|gb|EFO58109.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 145-7] gi|309700897|emb|CBJ00194.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|310337385|gb|EFQ02523.1| uncharacterized family UPF0054 family protein [Escherichia coli 1827-70] gi|313649695|gb|EFS14119.1| uncharacterized family UPF0054 family protein [Shigella flexneri 2a str. 2457T] gi|315059913|gb|ADT74240.1| conserved protein [Escherichia coli W] gi|315135325|dbj|BAJ42484.1| hypothetical protein ECDH1ME8569_0628 [Escherichia coli DH1] gi|315287092|gb|EFU46506.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 110-3] gi|315616420|gb|EFU97037.1| uncharacterized family UPF0054 family protein [Escherichia coli 3431] gi|320174709|gb|EFW49841.1| putative metalloprotease [Shigella dysenteriae CDC 74-1112] gi|320183047|gb|EFW57912.1| putative metalloprotease [Shigella flexneri CDC 796-83] gi|320198215|gb|EFW72819.1| putative metalloprotease [Escherichia coli EC4100B] gi|320638109|gb|EFX07873.1| metal-binding heat shock protein [Escherichia coli O157:H7 str. G5101] gi|320643513|gb|EFX12683.1| metal-binding heat shock protein [Escherichia coli O157:H- str. 493-89] gi|320648848|gb|EFX17475.1| metal-binding heat shock protein [Escherichia coli O157:H- str. H 2687] gi|320654432|gb|EFX22479.1| metal-binding heat shock protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660114|gb|EFX27644.1| metal-binding heat shock protein [Escherichia coli O55:H7 str. USDA 5905] gi|320664912|gb|EFX32047.1| metal-binding heat shock protein [Escherichia coli O157:H7 str. LSU-61] gi|323153614|gb|EFZ39862.1| hypothetical protein ECEPECA14_4414 [Escherichia coli EPECa14] gi|323158886|gb|EFZ44897.1| hypothetical protein ECE128010_4803 [Escherichia coli E128010] gi|323170784|gb|EFZ56434.1| hypothetical protein ECLT68_4849 [Escherichia coli LT-68] gi|323179862|gb|EFZ65419.1| hypothetical protein ECOK1180_1271 [Escherichia coli 1180] gi|323379523|gb|ADX51791.1| protein of unknown function UPF0054 [Escherichia coli KO11] gi|323938420|gb|EGB34674.1| hypothetical protein ERCG_00456 [Escherichia coli E1520] gi|323943073|gb|EGB39232.1| hypothetical protein ERDG_00410 [Escherichia coli E482] gi|323945134|gb|EGB41196.1| hypothetical protein EREG_03318 [Escherichia coli H120] gi|323952770|gb|EGB48638.1| hypothetical protein ERKG_00543 [Escherichia coli H252] gi|323958412|gb|EGB54118.1| hypothetical protein ERLG_00402 [Escherichia coli H263] gi|323967605|gb|EGB63021.1| hypothetical protein ERJG_01183 [Escherichia coli M863] gi|323972113|gb|EGB67327.1| hypothetical protein ERHG_01926 [Escherichia coli TA007] gi|323976359|gb|EGB71449.1| hypothetical protein ERFG_02795 [Escherichia coli TW10509] gi|324006278|gb|EGB75497.1| hypothetical protein HMPREF9532_04037 [Escherichia coli MS 57-2] gi|324016066|gb|EGB85285.1| hypothetical protein HMPREF9542_05327 [Escherichia coli MS 117-3] gi|324114780|gb|EGC08748.1| hypothetical protein ERIG_00774 [Escherichia fergusonii B253] gi|324116733|gb|EGC10648.1| hypothetical protein ERBG_03409 [Escherichia coli E1167] gi|325498162|gb|EGC96021.1| metal-binding heat shock protein required for rRNA maturation [Escherichia fergusonii ECD227] gi|327254343|gb|EGE65965.1| hypothetical protein ECSTEC7V_0796 [Escherichia coli STEC_7v] gi|331037960|gb|EGI10180.1| putative metalloprotease YbeY [Escherichia coli H736] gi|331049950|gb|EGI22008.1| putative metalloprotease YbeY [Escherichia coli M718] gi|331066238|gb|EGI38122.1| putative metalloprotease YbeY [Escherichia coli TA271] gi|331070659|gb|EGI42022.1| putative metalloprotease YbeY [Escherichia coli TA280] gi|331076379|gb|EGI47661.1| putative metalloprotease YbeY [Escherichia coli H591] gi|332097751|gb|EGJ02725.1| hypothetical protein SB359474_0560 [Shigella boydii 3594-74] gi|332104153|gb|EGJ07499.1| conserved hypothetical protein [Shigella sp. D9] gi|332760969|gb|EGJ91257.1| hypothetical protein SF434370_0836 [Shigella flexneri 4343-70] gi|332761159|gb|EGJ91445.1| hypothetical protein SF274771_0770 [Shigella flexneri 2747-71] gi|332763338|gb|EGJ93578.1| hypothetical protein SFK671_0733 [Shigella flexneri K-671] gi|332768237|gb|EGJ98422.1| conserved protein involved in translation [Shigella flexneri 2930-71] gi|333007427|gb|EGK26907.1| hypothetical protein SFVA6_1074 [Shigella flexneri VA-6] gi|333008105|gb|EGK27581.1| hypothetical protein SFK218_0936 [Shigella flexneri K-218] gi|333010075|gb|EGK29510.1| hypothetical protein SFK272_0934 [Shigella flexneri K-272] gi|333020906|gb|EGK40166.1| hypothetical protein SFK227_0890 [Shigella flexneri K-227] gi|333021512|gb|EGK40762.1| hypothetical protein SFK304_0840 [Shigella flexneri K-304] Length = 155 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|71733514|ref|YP_276505.1| metalloprotease [Pseudomonas syringae pv. phaseolicola 1448A] gi|123635049|sp|Q48DN6|RRMF_PSE14 RecName: Full=Probable rRNA maturation factor gi|71554067|gb|AAZ33278.1| conserved hypothetical protein TIGR00043 [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322686|gb|EFW78779.1| putative metalloprotease [Pseudomonas syringae pv. glycinea str. B076] gi|320330529|gb|EFW86508.1| putative metalloprotease [Pseudomonas syringae pv. glycinea str. race 4] gi|330873683|gb|EGH07832.1| metal-binding heat shock protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 166 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 65/162 (40%), Positives = 89/162 (54%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E + DE R CE+ + ++ EL++ D + Sbjct: 3 ELDLQIASETSA-PDEARFRLWCEMGLRQRSAD------------SELTIRLVDENEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADAPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 150 >gi|330892982|gb|EGH25643.1| metal-binding heat shock protein [Pseudomonas syringae pv. mori str. 301020] Length = 161 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E + DE R CE+ + ++ EL++ D + Sbjct: 3 ELDLQIASETSA-PDEARFRLWCEMGLRQRSAD------------SELTIRLVDENEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 150 >gi|119944306|ref|YP_941986.1| hypothetical protein Ping_0533 [Psychromonas ingrahamii 37] gi|145558834|sp|A1SSC2|RRMF_PSYIN RecName: Full=Probable rRNA maturation factor gi|119862910|gb|ABM02387.1| hypothetical protein UPF0054 [Psychromonas ingrahamii 37] Length = 158 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 82/158 (51%), Gaps = 9/158 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA D L F K + I G EL++ D I L Sbjct: 5 VDLQIAC-----SDPNDLPMPA--SFEKWIEAAILGGSESHREEAELTVRIVDQDEIMQL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR I K TNVL+FP F + G + +LGD+++ E++E EA + GK H H+ Sbjct: 58 NHQYRNISKTTNVLAFP--FQNPPGLTLPLLGDLIICKEVVESEAKLQGKSLTAHWAHMS 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IH LHLLGYDH++ +A ME LE +L +LG DPY Sbjct: 116 IHSTLHLLGYDHIEQAEAVEMESLETKLLTELGFTDPY 153 >gi|254247271|ref|ZP_04940592.1| hypothetical protein BCPG_02058 [Burkholderia cenocepacia PC184] gi|124872047|gb|EAY63763.1| hypothetical protein BCPG_02058 [Burkholderia cenocepacia PC184] Length = 270 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 85/165 (51%), Gaps = 12/165 (7%) Query: 7 NLPR-LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + PR L+L ++V+ +GDEI + K ++ I F +L++ F + Sbjct: 116 DEPRALELDLSVQ---YGDEITSDVRKTLPKRKLIAEWIEPALFA---SAQLTVRFVGEN 169 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YR D PTNVL+F A ++GD+VL ++E EA+ GK H Sbjct: 170 EGRTLNAGYRHKDYPTNVLTFAYDAAP----DGTVIGDLVLCCPVVEKEAHDQGKPLAAH 225 Query: 126 LVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 226 YAHLLVHGALHAQGYDHETNDEDAAEMEALEVDILAKLGFPNPYQ 270 >gi|157146731|ref|YP_001454050.1| putative metalloprotease [Citrobacter koseri ATCC BAA-895] gi|166228386|sp|A8AJF1|RRMF_CITK8 RecName: Full=Probable rRNA maturation factor gi|157083936|gb|ABV13614.1| hypothetical protein CKO_02504 [Citrobacter koseri ATCC BAA-895] Length = 155 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 87/164 (53%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E+ + +E +T V + + E+++ D Sbjct: 1 MSQVILDLQLACEDHSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFP--FEAPPGMEMPLLGDLIICRQVVEQEAKEQDKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 >gi|159043564|ref|YP_001532358.1| hypothetical protein Dshi_1015 [Dinoroseobacter shibae DFL 12] gi|189038542|sp|A8LSE3|RRMF_DINSH RecName: Full=Probable rRNA maturation factor gi|157911324|gb|ABV92757.1| protein of unknown function UPF0054 [Dinoroseobacter shibae DFL 12] Length = 181 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 65/181 (35%), Positives = 90/181 (49%), Gaps = 18/181 (9%) Query: 2 SVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVF 61 +++ + R ++IA E+A W D + L L + L + E+S++ Sbjct: 4 TIRPDDPARATVEIATEDAAW-DALDLEALAGRAVDATLVALD-----LPPAAFEVSILA 57 Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM------------LGDIVLAYE 109 D RI TLN E+RG PTNVLS+P + D LGD+ LA+ Sbjct: 58 CDDARIATLNGEFRGKPTPTNVLSWPAEDRAPDTPGGAPHLPDPGDPMAAELGDLALAHG 117 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 EA GK +H+ HLI+HG LHLLG+DH D DA MEGLE IL+ L + +PYE Sbjct: 118 TCAREAAEAGKPLADHVTHLIVHGTLHLLGFDHETDADAARMEGLEVKILQTLNMANPYE 177 Query: 170 V 170 Sbjct: 178 T 178 >gi|218699023|ref|YP_002406652.1| putative metalloprotease [Escherichia coli IAI39] gi|226710476|sp|B7NM10|RRMF_ECO7I RecName: Full=Probable rRNA maturation factor YbeY gi|218369009|emb|CAR16763.1| putative metal-dependent hydrolase [Escherichia coli IAI39] Length = 155 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ DS Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDS 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHCLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|15837505|ref|NP_298193.1| putative metalloprotease [Xylella fastidiosa 9a5c] gi|26006920|sp|Q9PEX5|RRMF_XYLFA RecName: Full=Probable rRNA maturation factor gi|9105822|gb|AAF83713.1|AE003930_3 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 161 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 71/138 (51%), Gaps = 6/138 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-- 93 F K V+ + + +L++ D LN+ YR D TNVLSFP Sbjct: 27 FRKWVAATLQ----GRIRKADLAIRIVDEKEGRALNYHYRNKDYATNVLSFPAQLPEPLP 82 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 +LGDIV+ +I EA GK H HL +HG LHLLG++H D ++A ME Sbjct: 83 KALKIPLLGDIVMCAPVIAREAAEQGKSLSAHYAHLTVHGTLHLLGWNHEDHQEADAMEQ 142 Query: 154 LERSILEDLGINDPYEVD 171 LER IL +LGI+DPY + Sbjct: 143 LEREILANLGISDPYLEE 160 >gi|170767743|ref|ZP_02902196.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|170123231|gb|EDS92162.1| conserved hypothetical protein [Escherichia albertii TW07627] Length = 155 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGQPEESQFQTWLNAVIPQ------------FQEESEVTIRLVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEQEALEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|189351456|ref|YP_001947084.1| unkown domain/putative metalloprotease fusion protein [Burkholderia multivorans ATCC 17616] gi|189335478|dbj|BAG44548.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 258 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +L ++V+ +GDEI + K ++ + F ++++ F T Sbjct: 108 EQELDLSVQ---YGDEITSEVRKTLPKRKLIAEWLEPALFA---NAQITVRFVGETEGRT 161 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F ++GD+VL ++E EA K H HL Sbjct: 162 LNAGYRHKDYPTNVLTFAY----DPAPDGTVIGDLVLCCPVVEKEAREQDKPLAAHYAHL 217 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 218 LVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR 258 >gi|169832186|ref|YP_001718168.1| cytidine deaminase [Candidatus Desulforudis audaxviator MP104C] gi|169639030|gb|ACA60536.1| cytidine deaminase [Candidatus Desulforudis audaxviator MP104C] Length = 301 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + +AV + ++ G VE+S+ D I LN +RG D+PT+VLSFP Sbjct: 20 ALITRAVESALAGG---DRRRVEVSVALVDDEYIHDLNRRFRGQDRPTDVLSFPMGEEEP 76 Query: 94 ---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D L+LGD+V++ +A G + + L +HG LHLLGYDH D+DA Sbjct: 77 GAGDEPGVLLLGDVVISLPAAARQAAEYGHGLDREVARLAVHGTLHLLGYDHEQDEDASR 136 Query: 151 MEGLERSILEDLG 163 M+ E ++L LG Sbjct: 137 MQEREDAVLAVLG 149 >gi|163757741|ref|ZP_02164830.1| hypothetical protein HPDFL43_20062 [Hoeflea phototrophica DFL-43] gi|162285243|gb|EDQ35525.1| hypothetical protein HPDFL43_20062 [Hoeflea phototrophica DFL-43] Length = 171 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 67/164 (40%), Positives = 91/164 (55%), Gaps = 1/164 (0%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDS 64 + P L +A+E WGDE + L + A ++L + E+SLV D Sbjct: 2 IPEPLFSLALALEAGEWGDEARIEALAQTALEAAAADLTRNEAQPFPSEPPEVSLVLADD 61 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + +N E+R KPTNVLSFP + MLGDI+LA E IE EA LGK + Sbjct: 62 AMMTGINSEWRAQAKPTNVLSFPAFPLTPGAMPGPMLGDIILARETIEREAGDLGKPVDE 121 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+ HL++HGFLHL GYDH+ ++DA ME +E IL L ++DPY Sbjct: 122 HITHLVVHGFLHLFGYDHIQNEDAEKMEAIETRILTSLNLSDPY 165 >gi|220935458|ref|YP_002514357.1| metal-dependent hydrolase [Thioalkalivibrio sp. HL-EbGR7] gi|219996768|gb|ACL73370.1| metal-dependent hydrolase [Thioalkalivibrio sp. HL-EbGR7] Length = 149 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 14/158 (8%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++Q+A E A E L + E+ + + D LN Sbjct: 6 EIQLASEAADIPVEASLERWAAAAWQ------------GDEDEASVVIRVVDEAESAELN 53 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR PTNVLSFP F + + LGD+V+ ++ EA GK E H H++I Sbjct: 54 GTYRHKQGPTNVLSFP--FEAPPEFAEGHLGDLVICAPVVLREAAEQGKTAEAHWAHMVI 111 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HG LHL G+DH++D +A ME LE+ IL LG +PYE Sbjct: 112 HGMLHLQGHDHIEDAEAARMEALEKEILSGLGYENPYE 149 >gi|289209297|ref|YP_003461363.1| hypothetical protein TK90_2137 [Thioalkalivibrio sp. K90mix] gi|288944928|gb|ADC72627.1| protein of unknown function UPF0054 [Thioalkalivibrio sp. K90mix] Length = 171 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-DGC 96 A + ++ + +++L D+ LN +RG D TNVLSFP Sbjct: 20 AATLHRAARAAWRGTGRADVALRVVDADEGLELNRGFRGRDYATNVLSFPAPDLPPMAAG 79 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LGDIVL ++ EA GK H H+++HG LHL G DH + +A ME +ER Sbjct: 80 EPRYLGDIVLCAPVLAREAAEQGKSLRAHYSHMVVHGLLHLQGMDHQESGEAEAMEAVER 139 Query: 157 SILEDLGINDPYEV 170 SIL LG DPY+ Sbjct: 140 SILAGLGYPDPYQT 153 >gi|82775936|ref|YP_402283.1| putative metalloprotease [Shigella dysenteriae Sd197] gi|309786321|ref|ZP_07680947.1| uncharacterized family UPF0054 family protein [Shigella dysenteriae 1617] gi|123563234|sp|Q32IR3|RRMF_SHIDS RecName: Full=Probable rRNA maturation factor YbeY gi|81240084|gb|ABB60794.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308925715|gb|EFP71196.1| uncharacterized family UPF0054 family protein [Shigella dysenteriae 1617] Length = 155 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 91/167 (54%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E++++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTILVVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|238028584|ref|YP_002912815.1| unkown domain/putative metalloprotease fusion protein [Burkholderia glumae BGR1] gi|237877778|gb|ACR30111.1| Hypothetical protein bglu_1g30480 [Burkholderia glumae BGR1] Length = 272 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L++ V+ +GDEI + K ++ +S +L++ F LN Sbjct: 124 ELELVVQ---YGDEITTAQRKTLPKRKLIAEWLSTSLSAD---AQLTVRFVGEQEGRELN 177 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D PTNVL+F A +GD+V+ ++E EA K H HL++ Sbjct: 178 RGYRKKDYPTNVLTFAYDAAP----DGTTIGDLVICCPVVEKEAAEQDKPLLAHYAHLLV 233 Query: 132 HGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY+ Sbjct: 234 HGALHAQGYDHERSEEDAAEMEALETDILAKLGFPNPYQ 272 >gi|217979026|ref|YP_002363173.1| protein of unknown function UPF0054 [Methylocella silvestris BL2] gi|254801577|sp|B8ETG9|RRMF_METSB RecName: Full=Probable rRNA maturation factor gi|217504402|gb|ACK51811.1| protein of unknown function UPF0054 [Methylocella silvestris BL2] Length = 176 Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 74/157 (47%), Positives = 95/157 (60%), Gaps = 7/157 (4%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + IAVE W TL E V + +S +K E+S+VF D I LN Sbjct: 5 IDIAVEAEAWESFEDPATLAETVIVQTISQSGAK----LAAEAEISIVFCDDAFIADLNR 60 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++RG+DKPTNVLSFP+ + + +LGDIV+AYE E EA GK F +H+ HLI H Sbjct: 61 KWRGVDKPTNVLSFPSGGPIA---VTPVLGDIVIAYETTEREAQEAGKPFRDHVAHLIAH 117 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GFLHL+GYDH+ DA ME LERS+L LGI+DPY+ Sbjct: 118 GFLHLIGYDHLAAADAEAMEALERSVLARLGIDDPYQ 154 >gi|300920524|ref|ZP_07136950.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 115-1] gi|300412463|gb|EFJ95773.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 115-1] Length = 155 Score = 169 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 15/162 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + + E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|298369902|ref|ZP_06981218.1| metalloprotease [Neisseria sp. oral taxon 014 str. F0314] gi|298281362|gb|EFI22851.1| metalloprotease [Neisseria sp. oral taxon 014 str. F0314] Length = 171 Score = 169 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SD 94 K + ++SL+ D N +YRG D TNVLSF D Sbjct: 33 EKDFYRWAWLAVKQRYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPD 92 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 S + GD+++ +++ EA GK E H HL +HG LHL+GYDH++D DA ME L Sbjct: 93 QFSDGLCGDLIICPQVVFKEAAEQGKTAEQHFAHLTLHGTLHLMGYDHIEDHDAEEMEAL 152 Query: 155 ERSILEDLGINDPYEVD 171 E +++ L +PY D Sbjct: 153 EIRLMQALNYPNPYRED 169 >gi|107023630|ref|YP_621957.1| unkown domain/ metalloprotease fusion protein [Burkholderia cenocepacia AU 1054] gi|116690715|ref|YP_836338.1| putative metalloprotease [Burkholderia cenocepacia HI2424] gi|170734058|ref|YP_001766005.1| unkown domain/putative metalloprotease fusion protein [Burkholderia cenocepacia MC0-3] gi|105893819|gb|ABF76984.1| protein of unknown function UPF0054 [Burkholderia cenocepacia AU 1054] gi|116648804|gb|ABK09445.1| protein of unknown function UPF0054 [Burkholderia cenocepacia HI2424] gi|169817300|gb|ACA91883.1| protein of unknown function UPF0054 [Burkholderia cenocepacia MC0-3] Length = 258 Score = 169 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 85/165 (51%), Gaps = 12/165 (7%) Query: 7 NLPR-LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + PR L+L ++V+ +GDEI + K ++ I F +L++ F + Sbjct: 104 DEPRALELDLSVQ---YGDEITSDVRKTLPKRKLIAEWIEPALFA---SAQLTVRFVGEN 157 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YR D PTNVL+F A ++GD+VL ++E EA+ GK H Sbjct: 158 EGRTLNAGYRHKDYPTNVLTFAYDAAP----DGTVIGDLVLCCPVVEKEAHDQGKPLAAH 213 Query: 126 LVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 214 YAHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 258 >gi|295695438|ref|YP_003588676.1| protein of unknown function UPF0054 [Bacillus tusciae DSM 2912] gi|295411040|gb|ADG05532.1| protein of unknown function UPF0054 [Bacillus tusciae DSM 2912] Length = 162 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 7/137 (5%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E + + + S+ E+S+V D RI LN +YRG+D+PT+VLSF Sbjct: 20 VERLLSAVLEEAASREGV---EAAEVSVVLVDDERIHELNRDYRGVDRPTDVLSFAMREG 76 Query: 92 SSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + + +LGDIV++ E E +AN G L L +HGFLHLLGYDH + Sbjct: 77 EGEPVQTEEGRELLGDIVISVETAERQANQYGHSLRRELAFLAVHGFLHLLGYDHQSPEQ 136 Query: 148 ACVMEGLERSILEDLGI 164 VM G + +L LG+ Sbjct: 137 ERVMFGKQEEVLSALGL 153 >gi|257482208|ref|ZP_05636249.1| putative metalloprotease [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625795|ref|ZP_06458749.1| putative metalloprotease [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648420|ref|ZP_06479763.1| putative metalloprotease [Pseudomonas syringae pv. aesculi str. 2250] gi|298489003|ref|ZP_07007026.1| predicted metal-dependent hydrolase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156501|gb|EFH97598.1| predicted metal-dependent hydrolase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867191|gb|EGH01900.1| metal-binding heat shock protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871079|gb|EGH05788.1| metal-binding heat shock protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331011327|gb|EGH91383.1| metal-binding heat shock protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 166 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E + DE R CE+ + ++ EL++ D + Sbjct: 3 ELDLQIASETSA-PDEARFRLWCEMGLRQRSAD------------SELTIRLVDENEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 150 >gi|172061653|ref|YP_001809305.1| unkown domain/putative metalloprotease fusion protein [Burkholderia ambifaria MC40-6] gi|171994170|gb|ACB65089.1| protein of unknown function UPF0054 [Burkholderia ambifaria MC40-6] Length = 261 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+ ++V+ +GDEI K ++ I F + +L++ F T Sbjct: 111 ELEFDLSVQ---YGDEITGDVRKACPKRKLIAEWIEPALF---SSAQLTVRFVGEEEGRT 164 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F ++GD+VL ++E EA GK H HL Sbjct: 165 LNDGYRHKDYPTNVLTFAY----DPLPDGTVIGDLVLCCPVVEKEAQEQGKPLAAHYAHL 220 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH ++DA ME LE +IL LG +PY+ Sbjct: 221 LVHGALHAQGYDHETSEEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|146329108|ref|YP_001210119.1| hypothetical protein DNO_1243 [Dichelobacter nodosus VCS1703A] gi|172047331|sp|A5EXA5|RRMF_DICNV RecName: Full=Probable rRNA maturation factor gi|146232578|gb|ABQ13556.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 155 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 4/154 (2%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I ++ E + + ++ + +E+++ D+ I LN EY Sbjct: 4 IVIDYQTESIPDDWLYPAEWRIQRWLDCALT--VLAIDEALEVTIRLVDNDEITELNAEY 61 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 RG + PTNVLSFP + + +LGDIV+A +I+ EA K+ E H H+ IHG Sbjct: 62 RGKNAPTNVLSFPCDWDLPE--EPRLLGDIVIAVQIVNQEAKAQKKKMEQHWAHMTIHGL 119 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLL YDH+++K+A +ME LER+IL LG DPY Sbjct: 120 LHLLDYDHIEEKEAQIMEDLERTILAQLGFPDPY 153 >gi|15800372|ref|NP_286384.1| putative metalloprotease [Escherichia coli O157:H7 EDL933] gi|15829951|ref|NP_308724.1| metalloprotease [Escherichia coli O157:H7 str. Sakai] gi|168752228|ref|ZP_02777250.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|168758301|ref|ZP_02783308.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|168764665|ref|ZP_02789672.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|168767105|ref|ZP_02792112.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|168777601|ref|ZP_02802608.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|168779149|ref|ZP_02804156.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|168786508|ref|ZP_02811515.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|168802432|ref|ZP_02827439.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|195939396|ref|ZP_03084778.1| putative metalloprotease [Escherichia coli O157:H7 str. EC4024] gi|208808538|ref|ZP_03250875.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208816422|ref|ZP_03257601.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208822844|ref|ZP_03263162.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209397406|ref|YP_002269294.1| hypothetical protein ECH74115_0752 [Escherichia coli O157:H7 str. EC4115] gi|217326196|ref|ZP_03442280.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254791822|ref|YP_003076659.1| putative metalloprotease [Escherichia coli O157:H7 str. TW14359] gi|261224127|ref|ZP_05938408.1| hypothetical protein EscherichiacoliO157_05909 [Escherichia coli O157:H7 str. FRIK2000] gi|261257821|ref|ZP_05950354.1| hypothetical protein EscherichiacoliO157EcO_18684 [Escherichia coli O157:H7 str. FRIK966] gi|26006914|sp|Q8XBK1|RRMF_ECO57 RecName: Full=Probable rRNA maturation factor YbeY gi|226704000|sp|B5YQL0|RRMF_ECO5E RecName: Full=Probable rRNA maturation factor YbeY gi|12513568|gb|AAG54992.1|AE005245_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13360155|dbj|BAB34120.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187767195|gb|EDU31039.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196] gi|188013886|gb|EDU52008.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113] gi|189002868|gb|EDU71854.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076] gi|189354845|gb|EDU73264.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401] gi|189363348|gb|EDU81767.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486] gi|189365375|gb|EDU83791.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501] gi|189373611|gb|EDU92027.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869] gi|189375556|gb|EDU93972.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508] gi|208728339|gb|EDZ77940.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206] gi|208733070|gb|EDZ81758.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045] gi|208737037|gb|EDZ84721.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042] gi|209158806|gb|ACI36239.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4115] gi|209776880|gb|ACI86752.1| hypothetical protein ECs0697 [Escherichia coli] gi|209776882|gb|ACI86753.1| hypothetical protein ECs0697 [Escherichia coli] gi|209776886|gb|ACI86755.1| hypothetical protein ECs0697 [Escherichia coli] gi|217322417|gb|EEC30841.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW14588] gi|254591222|gb|ACT70583.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|320193065|gb|EFW67705.1| putative metalloprotease [Escherichia coli O157:H7 str. EC1212] gi|326341409|gb|EGD65201.1| putative metalloprotease [Escherichia coli O157:H7 str. 1044] gi|326345811|gb|EGD69550.1| putative metalloprotease [Escherichia coli O157:H7 str. 1125] Length = 155 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQMVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|115352799|ref|YP_774638.1| unkown domain/putative metalloprotease fusion protein [Burkholderia ambifaria AMMD] gi|115282787|gb|ABI88304.1| protein of unknown function UPF0054 [Burkholderia ambifaria AMMD] Length = 261 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+ ++V+ +GDE+ K ++ I F + +L++ F T Sbjct: 111 ELEFDLSVQ---YGDEVTGDVRKACPKRKLIAEWIEPALF---SSAQLTVRFVGEEEGRT 164 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F ++GD+VL ++E EA GK H HL Sbjct: 165 LNDGYRHKDYPTNVLTFAY----DPLPDGTVIGDLVLCCPVVEKEAQEQGKPLAAHYAHL 220 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH ++DA ME LE +IL LG +PY+ Sbjct: 221 LVHGALHAQGYDHETSEEDAAEMEALEVAILAKLGFPNPYQ 261 >gi|149192274|ref|ZP_01870486.1| hypothetical protein VSAK1_11415 [Vibrio shilonii AK1] gi|148833889|gb|EDL50914.1| hypothetical protein VSAK1_11415 [Vibrio shilonii AK1] Length = 154 Score = 169 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 90/162 (55%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIAVE+ E L + E + K + EL++ D + Sbjct: 4 ELDLQIAVES-----EQGLPSADE------FQGWLDKTITPFQQDAELTIRIVDEEESQQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F + G +LGD+++ +++E EA K H H+ Sbjct: 53 LNRDYRGKDKPTNVLSFP--FEAPPGVEMDLLGDMIICRQVVEKEAIEQSKPLIAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I+ D+G +DPY V+ Sbjct: 111 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLDMGFDDPYLVE 152 >gi|206559302|ref|YP_002230063.1| unkown domain/putative metalloprotease fusion protein [Burkholderia cenocepacia J2315] gi|198035340|emb|CAR51215.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 258 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 12/165 (7%) Query: 7 NLPR-LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + PR L+L ++V+ +GDEI + K ++ + F +L++ F + Sbjct: 104 DEPRALELDLSVQ---YGDEITSDVRKTLPKRKLIAEWLEPALFA---SAQLTVRFVGEN 157 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YR D PTNVL+F A ++GD+VL ++E EA+ GK H Sbjct: 158 EGRTLNAGYRHKDYPTNVLTFAYDAAP----DGTVIGDLVLCCPVVEKEAHDQGKPLMAH 213 Query: 126 LVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 214 YAHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 258 >gi|262374160|ref|ZP_06067437.1| metal-dependent hydrolase [Acinetobacter junii SH205] gi|262311171|gb|EEY92258.1| metal-dependent hydrolase [Acinetobacter junii SH205] Length = 161 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 8/164 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ +++ L+ K + + F + E+ + D L Sbjct: 1 MKINLSLQQDFQANDLPLK---RGQIKKQIETALRHVGF--DADCEIGIACVDLAESHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ + LGD+V+ ++ EA K +H H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEMLSLLEAEPLGDLVICIPVVLQEAAEQQKTPSDHFTH 115 Query: 129 LIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDPYEVD 171 L++HG LHLLGYDH + +A ME LE IL+ LGI++PY+ D Sbjct: 116 LLVHGILHLLGYDHETSEVEAEEMEALEIEILKKLGISNPYQAD 159 >gi|26246634|ref|NP_752674.1| putative metalloprotease [Escherichia coli CFT073] gi|110640881|ref|YP_668609.1| putative metalloprotease [Escherichia coli 536] gi|170681098|ref|YP_001742777.1| putative metalloprotease [Escherichia coli SMS-3-5] gi|191173958|ref|ZP_03035476.1| conserved hypothetical protein [Escherichia coli F11] gi|215485692|ref|YP_002328123.1| putative metalloprotease [Escherichia coli O127:H6 str. E2348/69] gi|227884367|ref|ZP_04002172.1| metal-dependent hydrolase [Escherichia coli 83972] gi|293408784|ref|ZP_06652623.1| metalloprotease [Escherichia coli B354] gi|300989981|ref|ZP_07179057.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 45-1] gi|300996643|ref|ZP_07181501.1| hypothetical protein HMPREF9553_04968 [Escherichia coli MS 200-1] gi|301025207|ref|ZP_07188778.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 69-1] gi|301049851|ref|ZP_07196789.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 185-1] gi|306812917|ref|ZP_07447110.1| putative metalloprotease [Escherichia coli NC101] gi|312965100|ref|ZP_07779337.1| uncharacterized family UPF0054 family protein [Escherichia coli 2362-75] gi|331645816|ref|ZP_08346919.1| putative metalloprotease YbeY [Escherichia coli M605] gi|331656681|ref|ZP_08357643.1| putative metalloprotease YbeY [Escherichia coli TA206] gi|331682077|ref|ZP_08382701.1| putative metalloprotease YbeY [Escherichia coli H299] gi|29428208|sp|Q8FJY3|RRMF_ECOL6 RecName: Full=Probable rRNA maturation factor YbeY gi|123049385|sp|Q0TK21|RRMF_ECOL5 RecName: Full=Probable rRNA maturation factor YbeY gi|226710479|sp|B1LLB0|RRMF_ECOSM RecName: Full=Probable rRNA maturation factor YbeY gi|254807364|sp|B7UKU2|RRMF_ECO27 RecName: Full=Probable rRNA maturation factor YbeY gi|26107033|gb|AAN79217.1|AE016757_121 Hypothetical protein ybeY [Escherichia coli CFT073] gi|110342473|gb|ABG68710.1| hypothetical protein YbeY [Escherichia coli 536] gi|170518816|gb|ACB16994.1| conserved hypothetical protein [Escherichia coli SMS-3-5] gi|190905734|gb|EDV65355.1| conserved hypothetical protein [Escherichia coli F11] gi|215263764|emb|CAS08100.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|222032412|emb|CAP75151.1| metalloprotease ybeY [Escherichia coli LF82] gi|227838453|gb|EEJ48919.1| metal-dependent hydrolase [Escherichia coli 83972] gi|281177807|dbj|BAI54137.1| conserved hypothetical protein [Escherichia coli SE15] gi|291471962|gb|EFF14445.1| metalloprotease [Escherichia coli B354] gi|300298385|gb|EFJ54770.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 185-1] gi|300304472|gb|EFJ58992.1| hypothetical protein HMPREF9553_04968 [Escherichia coli MS 200-1] gi|300396159|gb|EFJ79697.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 69-1] gi|300407256|gb|EFJ90794.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 45-1] gi|305853680|gb|EFM54119.1| putative metalloprotease [Escherichia coli NC101] gi|307552523|gb|ADN45298.1| putative metal-dependent hydrolase YbeY [Escherichia coli ABU 83972] gi|312290191|gb|EFR18074.1| uncharacterized family UPF0054 family protein [Escherichia coli 2362-75] gi|312945199|gb|ADR26026.1| putative metalloprotease [Escherichia coli O83:H1 str. NRG 857C] gi|315292082|gb|EFU51434.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 153-1] gi|315299191|gb|EFU58445.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 16-3] gi|320194165|gb|EFW68797.1| putative metalloprotease [Escherichia coli WV_060327] gi|323191292|gb|EFZ76556.1| hypothetical protein ECRN5871_0581 [Escherichia coli RN587/1] gi|324010386|gb|EGB79605.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 60-1] gi|330910416|gb|EGH38926.1| metal-dependent hydrolase [Escherichia coli AA86] gi|331044568|gb|EGI16695.1| putative metalloprotease YbeY [Escherichia coli M605] gi|331054929|gb|EGI26938.1| putative metalloprotease YbeY [Escherichia coli TA206] gi|331080756|gb|EGI51930.1| putative metalloprotease YbeY [Escherichia coli H299] Length = 155 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME +E I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEAIETEIMLALGYEDPYIAE 153 >gi|238762865|ref|ZP_04623833.1| metalloprotease [Yersinia kristensenii ATCC 33638] gi|238698876|gb|EEP91625.1| metalloprotease [Yersinia kristensenii ATCC 33638] Length = 130 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 2/125 (1%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD 103 + + + E+++ D LN YRG DKPTNVLSFP F + +LGD Sbjct: 1 MEAVLPQFQEVSEVTIRVVDEAESHELNLTYRGKDKPTNVLSFP--FEAPPEIELPLLGD 58 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +++ +++E EA K H H+++HG LHLLGYDH+ D +A ME +E I+++LG Sbjct: 59 LIICRQVVEQEAVEQEKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQNLG 118 Query: 164 INDPY 168 DPY Sbjct: 119 YPDPY 123 >gi|218288622|ref|ZP_03492899.1| protein of unknown function UPF0054 [Alicyclobacillus acidocaldarius LAA1] gi|218241279|gb|EED08454.1| protein of unknown function UPF0054 [Alicyclobacillus acidocaldarius LAA1] Length = 157 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 11/163 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N +D+ VE L + E V A + +G E+S++F + Sbjct: 1 MNRLSIDVTCEVEWPLTPPHGDAQAFVERVLEAAAERIGVRG--------EVSVLFVNDD 52 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 I LN YR +D+PT+VLSFP MLGDIV++ + +A G Sbjct: 53 AIHELNRTYRQVDRPTDVLSFPMNEGEELADPDEVDPMLGDIVVSVDRAREQAEAYGHSL 112 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L++HGFLHL GYDH D+ M GL+ IL+ +G++ Sbjct: 113 EREVAFLLVHGFLHLNGYDHEDEAGEREMFGLQEEILQGIGLS 155 >gi|13474616|ref|NP_106185.1| hypothetical protein mlr5536 [Mesorhizobium loti MAFF303099] gi|26006933|sp|Q98BK1|RRMF_RHILO RecName: Full=Probable rRNA maturation factor gi|14025370|dbj|BAB51971.1| mlr5536 [Mesorhizobium loti MAFF303099] Length = 166 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 74/161 (45%), Positives = 92/161 (57%), Gaps = 6/161 (3%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P +D+ I+VE W DE L L + A + G ELS+VF+D I Sbjct: 12 PPVDIDISVEAGDWPDEAGLARLVDRAVDAAFAETGVTGR------SELSVVFSDDAHIR 65 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN E+RG DKPTNVLSFP + G MLGDIVLA E + EA + K +NH+ H Sbjct: 66 TLNAEWRGKDKPTNVLSFPAFPFAQGGPLPPMLGDIVLAAETVSREAALEDKPVQNHITH 125 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L+IHG LHLLG+DH D +A ME +ER+ L L I DPY Sbjct: 126 LVIHGLLHLLGHDHETDAEAEAMEAIERAALARLAIPDPYA 166 >gi|323163922|gb|EFZ49731.1| hypothetical protein SS53G_5761 [Shigella sonnei 53G] gi|323184986|gb|EFZ70353.1| hypothetical protein ECOK1357_1645 [Escherichia coli 1357] Length = 152 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 15/162 (9%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E N+ +E +T V + + E+++ D+ + Sbjct: 3 LDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDTAESHS 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 51 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 109 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 150 >gi|238795392|ref|ZP_04638907.1| metalloprotease [Yersinia mollaretii ATCC 43969] gi|238720511|gb|EEQ12312.1| metalloprotease [Yersinia mollaretii ATCC 43969] Length = 127 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 + + E+++ D LN YRG DK TNVLSFP F + +LGD+++ + Sbjct: 4 QFQAVSEVTIRLVDEAESHELNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQ 61 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++E EA K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 62 VVEQEAVEQEKALFAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 120 >gi|56708799|ref|YP_164840.1| hypothetical protein SPOA0008 [Ruegeria pomeroyi DSS-3] gi|59799077|sp|Q5LLL4|RRMF_SILPO RecName: Full=Probable rRNA maturation factor gi|56680484|gb|AAV97149.1| conserved hypothetical protein TIGR00043 [Ruegeria pomeroyi DSS-3] Length = 165 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 20/173 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L + +E+ W L L + + ++ + + + E+SL+ D RI L Sbjct: 1 MTLDLTLEDPRW---TILPPLADRAISATLAQM-----GLDPELCEISLLGCDDARITAL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R PTNVLS+P D ++ LGDI +A++ + EA+ Sbjct: 53 NAEFREKPSPTNVLSWPAEDLAAETPGGTPLAPEPDFTGAVPLGDIAIAFDTCQREADAA 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +H+ HLI+HG LHLLGYDH+ D+DA +MEGLE IL +LGI+DPY ++ Sbjct: 113 GKPIADHVTHLIVHGLLHLLGYDHIRDEDATLMEGLETRILGNLGIDDPYTME 165 >gi|289675769|ref|ZP_06496659.1| putative metalloprotease [Pseudomonas syringae pv. syringae FF5] gi|330895568|gb|EGH27876.1| metal-binding heat shock protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330976850|gb|EGH76881.1| metal-binding heat shock protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 166 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 87/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E + DE R CE+ + ++ EL++ D Sbjct: 3 ELDLQIASETSA-PDEARFRLWCEMGLRQRSAD------------SELTIRLVDETEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNNTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSIDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|284159397|ref|YP_441146.3| hypothetical protein BTH_I0589 [Burkholderia thailandensis E264] gi|123537980|sp|Q2T103|RRMF_BURTA RecName: Full=Probable rRNA maturation factor gi|83655057|gb|ABC39120.1| conserved hypothetical protein TIGR00043, putative [Burkholderia thailandensis E264] Length = 437 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 288 PELDLAV-----QYGDEIGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 339 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 340 TLNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 395 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 396 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 437 >gi|66047574|ref|YP_237415.1| putative metalloprotease [Pseudomonas syringae pv. syringae B728a] gi|75500575|sp|Q4ZN95|RRMF_PSEU2 RecName: Full=Probable rRNA maturation factor gi|63258281|gb|AAY39377.1| Protein of unknown function UPF0054 [Pseudomonas syringae pv. syringae B728a] gi|330969454|gb|EGH69520.1| metal-binding heat shock protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 166 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E + DE LR CE+ + ++ EL++ D Sbjct: 3 ELDLQVASETSA-PDEARLRLWCEMGLRQRSAD------------SELTIRLVDETEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNNTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|330963482|gb|EGH63742.1| metal-binding heat shock protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 166 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E DE R CE+ + ++ EL++ D Sbjct: 3 ELDLQVASETPA-PDEARFRLWCEMGLRQRSAD------------SELTIRLVDETEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|323143880|ref|ZP_08078544.1| translation metalloprotein YbeY [Succinatimonas hippei YIT 12066] gi|322416352|gb|EFY07022.1| translation metalloprotein YbeY [Succinatimonas hippei YIT 12066] Length = 157 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 11/158 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQ+A++ + L + E+ A S LI Y E+++ S I+ L Sbjct: 5 IDLQVAID-----PKESLPDIDELTLW-AKSALIGADY---HKDSEITVRIVASDEIQEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYR D PTN+LSFP F D +LGD+++ EI+ EA V K ++ H HLI Sbjct: 56 NREYRHKDCPTNILSFP--FECPDVIDLPLLGDLIICDEIVRREAKVQEKTYKEHFAHLI 113 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++ KDA ME LE I+ LG DPY Sbjct: 114 VHGCLHLLGYDHIEAKDAAKMEPLEVKIITKLGYPDPY 151 >gi|325981204|ref|YP_004293606.1| hypothetical protein NAL212_0499 [Nitrosomonas sp. AL212] gi|325530723|gb|ADZ25444.1| protein of unknown function UPF0054 [Nitrosomonas sp. AL212] Length = 168 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 71/166 (42%), Gaps = 21/166 (12%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 V++ N RL +Q A E R +V + E+ L Sbjct: 15 VQRANSFRLMVQYATECTAVPGRPQFRRWAKVALMQ---------------EAEVVLRLV 59 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D LN ++R + TNVL+F A + GDI+L +I EA K Sbjct: 60 DEKEGRELNQQFRNKNYATNVLTFVYDDAEP------LTGDIILCAPVISEEAQQQNKNL 113 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H HL IHG LHL GYDH++D DA ME LE IL LG +PY Sbjct: 114 MAHYAHLTIHGLLHLQGYDHIEDSDATAMEQLEIQILTKLGFTNPY 159 >gi|325267029|ref|ZP_08133699.1| metal-dependent hydrolase [Kingella denitrificans ATCC 33394] gi|324981529|gb|EGC17171.1| metal-dependent hydrolase [Kingella denitrificans ATCC 33394] Length = 167 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 6/139 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + + Y ELSLV D N +YRG D TNVLSF Sbjct: 33 DEKQFYRWIWHALKSHY----RRAELSLVLLDEEEARAYNRDYRGKDYATNVLSFALNEG 88 Query: 92 SS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 S + GD+++ +++ EA GK +H HL+IHG LHL+G+DH++D+DA Sbjct: 89 ESMFADTQDTLYGDLIICPQVVAREAAEQGKPLHHHFAHLVIHGTLHLMGFDHIEDEDAD 148 Query: 150 VMEGLERSILEDLGINDPY 168 ME LE +L L I +PY Sbjct: 149 QMEALEIELLRQLNIPNPY 167 >gi|238790780|ref|ZP_04634539.1| metalloprotease [Yersinia frederiksenii ATCC 33641] gi|238721138|gb|EEQ12819.1| metalloprotease [Yersinia frederiksenii ATCC 33641] Length = 127 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 + + E+++ D LN YRG DK TNVLSFP F + +LGD+++ + Sbjct: 4 QFQEVAEVTIRLVDEAESHELNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQ 61 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++E EA K H H+++HG LHLLGYDH+ D +A ME +E I+++LG DPY Sbjct: 62 VVEQEAVEQDKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQNLGYPDPY 120 >gi|254284310|ref|ZP_04959278.1| putative metalloprotease BUsg_427 [gamma proteobacterium NOR51-B] gi|219680513|gb|EED36862.1| putative metalloprotease BUsg_427 [gamma proteobacterium NOR51-B] Length = 162 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 L + F++ V+ + G E+S+ I N +YR ++PTNVLSF Sbjct: 12 GLEAPDDDSFSRWVNAALVSGQHAGCFTPEVSVRIAGEREITAFNQQYRDRNRPTNVLSF 71 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 P + S +LGDIV+ ++ EA E+H HL +HG LHLLG+DH+ D Sbjct: 72 PASVPPE--VESGLLGDIVICAPVVIAEAREQECSLESHWAHLTVHGTLHLLGFDHIRDD 129 Query: 147 DACVMEGLERSILEDLGINDPY 168 +A +ME LE S L +LG +PY Sbjct: 130 EAEIMEALEVSALAELGFGNPY 151 >gi|28871921|ref|NP_794540.1| hypothetical protein PSPTO_4806 [Pseudomonas syringae pv. tomato str. DC3000] gi|37999558|sp|Q87VX9|RRMF_PSESM RecName: Full=Probable rRNA maturation factor gi|28855174|gb|AAO58235.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] Length = 166 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E DE R CE+ + ++ EL++ D Sbjct: 3 ELDLQIASETPA-PDEARFRLWCEMGLRQRSAD------------SELTIRLVDETEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|148555304|ref|YP_001262886.1| hypothetical protein Swit_2389 [Sphingomonas wittichii RW1] gi|166228577|sp|A5V8Y2|RRMF_SPHWW RecName: Full=Probable rRNA maturation factor gi|148500494|gb|ABQ68748.1| protein of unknown function UPF0054 [Sphingomonas wittichii RW1] Length = 169 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 61/165 (36%), Positives = 82/165 (49%), Gaps = 7/165 (4%) Query: 13 LQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +++AV+ W D L A+ + E+S+ TD + LN Sbjct: 2 IEVAVQAEPDWADGTDWERLAIEAVTAAMRTTPHAAMLDAAYMAEVSIRLTDDDEVHALN 61 Query: 72 FEYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +YR DKPTNVLSFP + ++LGDI+LA + EA G H Sbjct: 62 RQYRQKDKPTNVLSFPMVQDDLIEGLDNSDDGEVLLGDIILARGVCVREAAEKGVPTAEH 121 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LHLLGYDH++D +A ME LER L LGI+DPY + Sbjct: 122 ATHLIVHGTLHLLGYDHIEDDEAEAMEDLERVALATLGIDDPYAI 166 >gi|56550970|ref|YP_161809.1| hypothetical protein ZMO0074 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761440|ref|ZP_04759528.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753355|ref|YP_003226248.1| hypothetical protein Za10_1119 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59799005|sp|Q5NRF6|RRMF_ZYMMO RecName: Full=Probable rRNA maturation factor gi|56542544|gb|AAV88698.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis ZM4] gi|241374347|gb|EER63844.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552718|gb|ACV75664.1| protein of unknown function UPF0054 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 176 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 67/165 (40%), Positives = 91/165 (55%), Gaps = 9/165 (5%) Query: 15 IAVE---NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 I VE + LW ++ + L + +AVS S K+ E+S+ F+D+ + LN Sbjct: 2 ITVEADISDLWPEQSNWEALAQTACQQAVSVSASDFLLAKDYETEISVCFSDNDTVHALN 61 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +R D+PTNVLSFP A S +LGDI+LA+++ + EA G ENH Sbjct: 62 KTWRDKDRPTNVLSFPMMEAEELAEIKNRVGSECLLGDIILAFDVAKKEALEKGISLENH 121 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 + HLI HG LHLLGYDH+ D +A +ME LER L L I DPY Sbjct: 122 VTHLITHGTLHLLGYDHILDNEAEIMEDLERKALAQLDIPDPYSD 166 >gi|332975865|gb|EGK12743.1| metal-dependent hydrolase [Desmospora sp. 8437] Length = 157 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSS 98 L+ + E+++ D I LN EYR +D+PT+VLSFP + Sbjct: 28 LMQAAETEQTPPAEVAVTIVDDEEIHRLNREYRQVDRPTDVLSFPQWEPGEEWGSPEGEP 87 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L LGDIV++ +A G E L L +HGFLHLLGYDH D++ M + +I Sbjct: 88 LPLGDIVISLPRAREQAAQYGHSLERELGFLAVHGFLHLLGYDHGTDEEEEEMFSRQEAI 147 Query: 159 LEDLGIN 165 L +G+ Sbjct: 148 LSRVGLT 154 >gi|330944991|gb|EGH46777.1| metal-binding heat shock protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 166 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 87/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E + DE R CE+ + ++ EL++ D Sbjct: 3 ELDLQIASETSA-PDEARFRLWCEMGLRQRSAD------------SELTIRLVDETEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNNTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSIDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|56476161|ref|YP_157750.1| hypothetical protein ebA1336 [Aromatoleum aromaticum EbN1] gi|62901202|sp|Q5P762|RRMF_AROAE RecName: Full=Probable rRNA maturation factor gi|56312204|emb|CAI06849.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 154 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 71/157 (45%), Gaps = 14/157 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + V+ A+ G E R+ + + + E+++ LN Sbjct: 12 LALTVQRAI-GAENRARSPTSALIRRWALAAL-------RGDAEMTVRLVGEAEGRRLNR 63 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +YRG D TNVL+F + + GD+VL ++ EA GK E H HLI+H Sbjct: 64 DYRGKDYATNVLTFVYDESE------RLAGDLVLCVPVVAREAAEQGKPLEAHFAHLIVH 117 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 G LHL G+DH +A ME LE +L LG +PY Sbjct: 118 GMLHLQGFDHEAPDEAEEMETLETRVLATLGYPNPYA 154 >gi|241662039|ref|YP_002980399.1| unkown domain/ metalloprotease fusion protein [Ralstonia pickettii 12D] gi|240864066|gb|ACS61727.1| protein of unknown function UPF0054 [Ralstonia pickettii 12D] Length = 270 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 79/165 (47%), Gaps = 10/165 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 L L + V+ +GDE+ + + + I+ F +L++ F Sbjct: 115 AGAEMLTLDLTVQ---YGDELKAAARKALPKERDIEAWIAPALFAD---AQLNVRFVGEE 168 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YRG D TNVL+F A ++ D S+ DIVL ++E EA K H Sbjct: 169 EGRTLNRTYRGKDYATNVLTFSYAESAEDPVSA----DIVLCCAVVEKEAKEQKKPLTAH 224 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LH GYDH D DA MEG+E IL DLG DPY Sbjct: 225 YAHLIVHGALHAQGYDHEDAADAKEMEGIETEILRDLGFADPYAD 269 >gi|218703992|ref|YP_002411511.1| putative metalloprotease [Escherichia coli UMN026] gi|293403920|ref|ZP_06647914.1| metalloprotease [Escherichia coli FVEC1412] gi|298379695|ref|ZP_06989300.1| metalloprotease ybeY [Escherichia coli FVEC1302] gi|300901172|ref|ZP_07119276.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 198-1] gi|331662026|ref|ZP_08362949.1| putative metalloprotease YbeY [Escherichia coli TA143] gi|226710478|sp|B7N9R4|RRMF_ECOLU RecName: Full=Probable rRNA maturation factor YbeY gi|218431089|emb|CAR11965.1| putative metal-dependent hydrolase [Escherichia coli UMN026] gi|291428506|gb|EFF01531.1| metalloprotease [Escherichia coli FVEC1412] gi|298279393|gb|EFI20901.1| metalloprotease ybeY [Escherichia coli FVEC1302] gi|300355386|gb|EFJ71256.1| conserved hypothetical protein TIGR00043 [Escherichia coli MS 198-1] gi|331060448|gb|EGI32412.1| putative metalloprotease YbeY [Escherichia coli TA143] Length = 155 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHSLNLIYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 153 >gi|126735011|ref|ZP_01750757.1| hypothetical protein RCCS2_14079 [Roseobacter sp. CCS2] gi|126715566|gb|EBA12431.1| hypothetical protein RCCS2_14079 [Roseobacter sp. CCS2] Length = 166 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 18/171 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + VE+ WGD + L ++ A+ L ++ ++ E+S++ D RI L Sbjct: 1 MTVDCVVEDPRWGD---INALAQIATDAALERL-----GLESSVFEISVLACDDARIAVL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N +RG KPTNVLS+P+ + LGDI +A++ EA GK Sbjct: 53 NEGFRGKPKPTNVLSWPSDERAAAIDGEMPLAPRPGPDNELGDIAIAFDTCTREAAEAGK 112 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++H +HL++HG LHLLG+DH D+DA +MEGLE IL LGI DPY + Sbjct: 113 TMQDHTIHLLVHGTLHLLGFDHERDRDATLMEGLETEILGKLGIPDPYRDE 163 >gi|330953008|gb|EGH53268.1| metal-binding heat shock protein [Pseudomonas syringae Cit 7] Length = 166 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 87/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E + DE R CE+ + ++ EL++ D Sbjct: 3 ELDLQIASETSA-PDEARFRLWCEMGLRQRSAD------------SELTIRLVDETEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAVEQGKSVDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|146308796|ref|YP_001189261.1| putative metalloprotease [Pseudomonas mendocina ymp] gi|166990901|sp|A4XYW3|RRMF_PSEMY RecName: Full=Probable rRNA maturation factor gi|145576997|gb|ABP86529.1| protein of unknown function UPF0054 [Pseudomonas mendocina ymp] Length = 151 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 83/162 (51%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A + DE LR CE+ + ++ EL++ D Sbjct: 3 ELDLQLAS-DGQHPDEAQLRRWCELALRQRTAD------------SELTIRLVDEEEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D TNVLSFP +LGD+V+ ++E EA GK E H HL Sbjct: 50 LNRTWRHKDYATNVLSFPAEIPDGI-LDIPLLGDLVICVPVLEREAAEQGKTLEAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+++ +A ME LER +L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIEEDEALEMEELERQLLAELGHPDPYAGD 150 >gi|254482458|ref|ZP_05095697.1| conserved hypothetical protein TIGR00043, putative [marine gamma proteobacterium HTCC2148] gi|214037149|gb|EEB77817.1| conserved hypothetical protein TIGR00043, putative [marine gamma proteobacterium HTCC2148] Length = 159 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 16/164 (9%) Query: 11 LDLQIAVENAL---WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 ++LQ+ ++NA DE +R V + + E+S+ D + Sbjct: 1 MNLQVDIQNASGESAPDEEDIRGWISTVLS-----------GRRSADTEISVRLVDIEEM 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YR PTNVLSFP+ L GDIV+ ++ EA K + H Sbjct: 50 TKLNQGYRDKSGPTNVLSFPSDLPPELDLPLL--GDIVICAPVVCDEAKSQQKILQAHWA 107 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H+ +HG LHLLGYDH+++ +A ME LE IL L PY+ + Sbjct: 108 HMTVHGTLHLLGYDHIEEDEALAMEALETEILTSLNYPCPYQGE 151 >gi|213966837|ref|ZP_03394988.1| conserved hypothetical protein TIGR00043 [Pseudomonas syringae pv. tomato T1] gi|301381968|ref|ZP_07230386.1| putative metalloprotease [Pseudomonas syringae pv. tomato Max13] gi|302058772|ref|ZP_07250313.1| putative metalloprotease [Pseudomonas syringae pv. tomato K40] gi|302135148|ref|ZP_07261138.1| putative metalloprotease [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928687|gb|EEB62231.1| conserved hypothetical protein TIGR00043 [Pseudomonas syringae pv. tomato T1] gi|330873561|gb|EGH07710.1| metal-binding heat shock protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 166 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E DE R CE+ + ++ EL++ D Sbjct: 3 ELDLQVASETPA-PDEARFRLWCEMGLRQRSAD------------SELTIRLVDETEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|163739045|ref|ZP_02146458.1| hypothetical protein RGBS107_09406 [Phaeobacter gallaeciensis BS107] gi|161387850|gb|EDQ12206.1| hypothetical protein RGBS107_09406 [Phaeobacter gallaeciensis BS107] Length = 176 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 90/173 (52%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I++E+ W D L T + + + + + ELSL+ D RI L Sbjct: 1 MTLDISIEDTRWQD-ADLTTHAVQAIHAVLGH-----FGLDADDCELSLLACDDARIMEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R KPTNVLS+P +D + LGDI +AYE EA Sbjct: 55 NTEFRQKAKPTNVLSWPAEDLSSEEAGDEPLLPEADFTGEIPLGDIAIAYETCAREAEDA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HLI+HG LHLLGYDH+ D DA +ME LE IL +GI+DPY +D Sbjct: 115 GKSLADHLRHLIVHGVLHLLGYDHIRDPDATLMERLEVQILGKMGIDDPYTLD 167 >gi|294637488|ref|ZP_06715774.1| putative metalloprotease [Edwardsiella tarda ATCC 23685] gi|291089320|gb|EFE21881.1| putative metalloprotease [Edwardsiella tarda ATCC 23685] Length = 157 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 15/162 (9%) Query: 11 LDLQIAVENA-LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA ++A E E V + + E+++ D Sbjct: 6 LDLQIACDDAPGLPAEGDFLRWLEAVLPR------------FRDEAEVTIRLVDEAESHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D+PTNVLSFP F + +LGD+V+ +++E+EA +H H+ Sbjct: 54 LNLTYRGKDRPTNVLSFP--FEAPPEIELPLLGDMVICRQVVELEAQQQNITPLSHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH+ D++A ME LE I++ LG DPY + Sbjct: 112 VVHGALHLLGYDHISDEEAEEMESLEADIMQALGYPDPYAAE 153 >gi|219870682|ref|YP_002475057.1| putative metalloprotease [Haemophilus parasuis SH0165] gi|254803906|sp|B8F457|RRMF_HAEPS RecName: Full=Probable rRNA maturation factor gi|219690886|gb|ACL32109.1| metalloprotease [Haemophilus parasuis SH0165] Length = 162 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 84/162 (51%), Gaps = 10/162 (6%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN + + + A + E+++ D Sbjct: 5 IDLQIASENTVGLPTAAQFQHWVDKALAM-------EAKTADYPETEITIRIVDEAESHE 57 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA K E H HL Sbjct: 58 LNLTYRGKDKPTNVLSFP--FEVPEGIQLPLLGDLIICRQVVEKEAVEQEKPLEAHWAHL 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+ D++A ME LE I++ LG +DPY + Sbjct: 116 AIHGTLHLLGYDHLTDEEAEEMESLETEIMQSLGFDDPYIAE 157 >gi|119775709|ref|YP_928449.1| putative metalloprotease [Shewanella amazonensis SB2B] gi|145572772|sp|A1S8S3|RRMF_SHEAM RecName: Full=Probable rRNA maturation factor gi|119768209|gb|ABM00780.1| protein of unknown function UPF0054 [Shewanella amazonensis SB2B] Length = 153 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 84/159 (52%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ AV E T V + + EL++ D+ + L Sbjct: 7 LDLQFAVNPGNLPTEAEFETWVRVALGDTL------------DEAELTIRIVDATESQQL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG DKPTNVLSFP F + G +LGD+V+ ++E EA K E H H++ Sbjct: 55 NRDYRGKDKPTNVLSFP--FEAPPGMELPLLGDLVICASVVENEALEQHKALEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH+DD +A ME LE ++L LG DPY+ Sbjct: 113 VHGCLHLLGYDHIDDAEAEEMEALETTLLTGLGYPDPYK 151 >gi|225025308|ref|ZP_03714500.1| hypothetical protein EIKCOROL_02206 [Eikenella corrodens ATCC 23834] gi|224941926|gb|EEG23135.1| hypothetical protein EIKCOROL_02206 [Eikenella corrodens ATCC 23834] Length = 175 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 10/145 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E F + + Y E+ L+ D N +YR D TNVLSF Sbjct: 33 EAQFRRWAWQAVKSQY----RRAEIGLLLLDEETARAYNRDYRQKDYATNVLSFALDEGE 88 Query: 93 SD------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 G ++ GD+V+ +++ EA GK E H HL +HG LHL+G+DH++ Sbjct: 89 QAALAGLSGSLPVLRGDLVICPQVVVREAAEQGKILEAHFAHLTLHGVLHLMGHDHIEPD 148 Query: 147 DACVMEGLERSILEDLGINDPYEVD 171 +A ME LE ++ LG +PY D Sbjct: 149 EAEAMEALEIRLMNQLGYPNPYAQD 173 >gi|167855765|ref|ZP_02478519.1| hypothetical protein HPS_06120 [Haemophilus parasuis 29755] gi|167853105|gb|EDS24365.1| hypothetical protein HPS_06120 [Haemophilus parasuis 29755] Length = 162 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 84/162 (51%), Gaps = 10/162 (6%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN + + + A + E+++ D Sbjct: 5 IDLQIASENTVGLPTAAQFQHWVDKALAM-------EAKTADYPETEITIRIVDEAESHE 57 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F +G +LGD+++ +++E EA K E H HL Sbjct: 58 LNLTYRGKDKPTNVLSFP--FEMPEGIELPLLGDLIICRQVVEKEAVEQEKPLEAHWAHL 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+ D++A ME LE I++ LG +DPY + Sbjct: 116 AIHGTLHLLGYDHLTDEEAEEMESLETEIMQSLGFDDPYIAE 157 >gi|187927509|ref|YP_001897996.1| unkown domain/putative metalloprotease fusion protein [Ralstonia pickettii 12J] gi|309779789|ref|ZP_07674544.1| hypothetical protein HMPREF1004_01138 [Ralstonia sp. 5_7_47FAA] gi|187724399|gb|ACD25564.1| protein of unknown function UPF0054 [Ralstonia pickettii 12J] gi|308921366|gb|EFP67008.1| hypothetical protein HMPREF1004_01138 [Ralstonia sp. 5_7_47FAA] Length = 270 Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 79/165 (47%), Gaps = 10/165 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 L L + V+ +GDE+ + + + I+ F +L++ F Sbjct: 115 AGAEMLTLDLTVQ---YGDELKAAARKALPKERDIEGWIAPALFAD---AQLNVRFVGEE 168 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YRG D TNVL+F A ++ D S+ DIVL ++E EA K H Sbjct: 169 EGRTLNRTYRGKDYATNVLTFSYAESAEDPVSA----DIVLCCTVVEKEAKEQKKPLLAH 224 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LH GYDH D DA MEG+E IL DLG DPY Sbjct: 225 YAHLIVHGALHAQGYDHEDAADAKEMEGIETEILRDLGFADPYAD 269 >gi|218688476|ref|YP_002396688.1| putative metalloprotease [Escherichia coli ED1a] gi|254807366|sp|B7MPH5|RRMF_ECO81 RecName: Full=Probable rRNA maturation factor YbeY gi|218426040|emb|CAR06857.1| putative metal-dependent hydrolase [Escherichia coli ED1a] Length = 155 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F G +LGD+++ +++E EA GK E Sbjct: 49 AESHCLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLIICRQVVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME +E I+ LG DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEAIETEIMLALGYEDPYIAE 153 >gi|170719818|ref|YP_001747506.1| putative metalloprotease [Pseudomonas putida W619] gi|229890245|sp|B1J201|RRMF_PSEPW RecName: Full=Probable rRNA maturation factor gi|169757821|gb|ACA71137.1| protein of unknown function UPF0054 [Pseudomonas putida W619] Length = 157 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ A +A D+ LR CE+ + ++ E+++ D Sbjct: 3 ELDLQRAT-DAATPDDAALRAWCELALRQRSAD------------SEMTIRLVDEAEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVLSFP A + +LGD+V+ ++E EA GK + H HL Sbjct: 50 LNHTYRHKDYATNVLSFP-ADVPDELLDIPLLGDLVICVPVVEREAAEQGKSLQAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH++D +A ME LER +L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIEDDEAEEMEALERELLAELGHPDPYADD 150 >gi|163741714|ref|ZP_02149104.1| hypothetical protein RG210_04075 [Phaeobacter gallaeciensis 2.10] gi|161384887|gb|EDQ09266.1| hypothetical protein RG210_04075 [Phaeobacter gallaeciensis 2.10] Length = 176 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 90/173 (52%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I++E+ W D L T + + + + + ELSL+ D RI L Sbjct: 1 MTLDISIEDTRWQD-ADLTTHAVQAIHAVLGH-----FGLDADDCELSLLACDDARIMEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R KPTNVLS+P +D + LGDI +AYE EA Sbjct: 55 NTEFRQKAKPTNVLSWPVEDLSSEEAGDEPLLPEADFTGEIPLGDIAIAYETCAREAEDA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK +HL HLI+HG LHLLGYDH+ D DA +ME LE IL +GI+DPY +D Sbjct: 115 GKSLADHLRHLIVHGVLHLLGYDHIRDPDATLMERLEVQILGKMGIDDPYTLD 167 >gi|330818259|ref|YP_004361964.1| hypothetical protein bgla_1g34050 [Burkholderia gladioli BSR3] gi|327370652|gb|AEA62008.1| hypothetical protein bgla_1g34050 [Burkholderia gladioli BSR3] Length = 269 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 77/165 (46%), Gaps = 13/165 (7%) Query: 5 KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 P L+L + +GDEI ++ K ++ +S F + +L++ F Sbjct: 116 PAGEPELELVV-----QYGDEIAASQRKKLPKPKLIAEWLSTALF---SDAQLTVRFVGE 167 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YR D PTNVL+F A +GD+VL ++E EA K Sbjct: 168 KEGRELNGGYRKKDYPTNVLTFAYDQAP----DGTTIGDLVLCCPVVEKEAGEQDKTLVA 223 Query: 125 HLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPY 168 H HL++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 224 HYAHLLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPY 268 >gi|238920800|ref|YP_002934315.1| hypothetical protein NT01EI_2926 [Edwardsiella ictaluri 93-146] gi|259646922|sp|C5BGB7|RRMF_EDWI9 RecName: Full=Probable rRNA maturation factor gi|238870369|gb|ACR70080.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 157 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 15/162 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A + E E V + + E+++ D Sbjct: 6 LDLQLACADLQGLPAEGDFLRWLEAVLPR------------FRDEAEVTIRLVDEAESHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D+PTNVLSFP F + G +LGD+V+ +++E EA +H H+ Sbjct: 54 LNLTYRGKDRPTNVLSFP--FEAPPGIELPLLGDMVICRQVVEREAQEQNISQLSHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH+ D++A ME LE I++ LG DPY + Sbjct: 112 VVHGSLHLLGYDHISDEEAEEMESLEAEIMQVLGYPDPYAAE 153 >gi|78484820|ref|YP_390745.1| hypothetical protein Tcr_0475 [Thiomicrospira crunogena XCL-2] gi|123555910|sp|Q31IF2|RRMF_THICR RecName: Full=Probable rRNA maturation factor gi|78363106|gb|ABB41071.1| Conserved hypothetical protein; UPF0054 [Thiomicrospira crunogena XCL-2] Length = 160 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 66/164 (40%), Positives = 85/164 (51%), Gaps = 10/164 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD Q+A E DE L T + + K V + E EL++ D I+TL Sbjct: 4 LDYQVAAEE---VDEAELPTYEQCL--KWVEVALLDDRLDGE--TELTIRIVDEDEIQTL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFAS---SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N +YRG D+ TNVLSFP G +GD+V+ +++ EA K E H Sbjct: 57 NRDYRGKDQTTNVLSFPFENPPVLVDLGEELPYIGDLVICAQVVAQEAKAQHKPLEAHWA 116 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHL G DHVDD +A ME LE IL DLG + PYE D Sbjct: 117 HMVIHGCLHLQGMDHVDDDEAIKMEALEAEILADLGYDSPYESD 160 >gi|146310843|ref|YP_001175917.1| putative metalloprotease [Enterobacter sp. 638] gi|166977725|sp|A4W836|RRMF_ENT38 RecName: Full=Probable rRNA maturation factor gi|145317719|gb|ABP59866.1| protein of unknown function UPF0054 [Enterobacter sp. 638] Length = 155 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ LDLQ+A E+ E E F K + +I + + E+++ D Sbjct: 1 MSQVILDLQLACEDNSGLPE-------ESQFQKWLDAVIPQ----FQEESEVTIRVVDEA 49 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K + H Sbjct: 50 ESHELNLTYRGKDKPTNVLSFP--FEAPPGIELPLLGDLIICRQVVEQEAKEQQKPLDAH 107 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H++IHG LHLLGYDH++D++A ME LE I+ LG DPY + Sbjct: 108 WAHMVIHGSLHLLGYDHIEDEEAEEMESLETEIMLALGYEDPYIAE 153 >gi|254486624|ref|ZP_05099829.1| conserved hypothetical protein TIGR00043 [Roseobacter sp. GAI101] gi|214043493|gb|EEB84131.1| conserved hypothetical protein TIGR00043 [Roseobacter sp. GAI101] Length = 171 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L I E+ W + L TL E + +L + ++ E++++ D RI LN Sbjct: 4 LDIVEEDPRWA-ALDLETLAESALITTLKHL-----NLDPDVSEITILACDDARIADLNA 57 Query: 73 EYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 ++RG PTNVLS+P ++D L LGDI ++Y+ EA GK Sbjct: 58 DFRGKPTPTNVLSWPADERGAAQDGGLPLTVTADFDGMLELGDIAISYDTCAKEARAAGK 117 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H+ HLIIHG LHLLGYDH D DA +MEG+E IL LG++DPY D Sbjct: 118 SMTDHVTHLIIHGTLHLLGYDHDRDADATLMEGIEVEILGKLGLDDPYRED 168 >gi|317128316|ref|YP_004094598.1| hypothetical protein Bcell_1604 [Bacillus cellulosilyticus DSM 2522] gi|315473264|gb|ADU29867.1| protein of unknown function UPF0054 [Bacillus cellulosilyticus DSM 2522] Length = 156 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS----SLMLGDIVLAY 108 E+S+ F + +I+ LN EYR D+PT+VLSF + +LGDI+++ Sbjct: 39 KDAEVSITFVEDDKIQELNREYRDKDQPTDVLSFALNEGDQQPITGEGLPELLGDIIISV 98 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G F L L +HGFLHLLGYDH +++ M + ILE G+ Sbjct: 99 PRAKQQAEEYGHGFNRELCFLAVHGFLHLLGYDHNTEEEEREMFKKQEEILEKYGLK 155 >gi|90420540|ref|ZP_01228447.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90335268|gb|EAS49021.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 203 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 6/163 (3%) Query: 11 LDLQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 L + + VE+ W D + + F+ A + L G V E+SL D + Sbjct: 18 LTVALTVEDPRWDDAGLGDIPAMAAETFSVAAARLGLPGDLVS----EISLTLADDETVR 73 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+R DKPTN+LSFP A + +LGD+++A+E + EA+ K F +H H Sbjct: 74 AVNAEWRNKDKPTNILSFPMADLAPGERPGPLLGDLLVAFETVAREADEEAKAFADHFRH 133 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L++HGFLHL+G DH+ D +A ME E +IL + GI DPY + Sbjct: 134 LLVHGFLHLMGLDHMVDTEADDMEAAEIAILAEFGIADPYGDE 176 >gi|17545248|ref|NP_518650.1| metalloprotease [Ralstonia solanacearum GMI1000] gi|17427539|emb|CAD14057.1| hypothetical protein RSc0529 [Ralstonia solanacearum GMI1000] Length = 255 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 76/161 (47%), Gaps = 10/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + V++ GD + + K + I+ F +L++ F D T Sbjct: 104 MLTLDLTVQH---GDALKAAARKALPKQKDIEAWIAPALFAD---AQLNVRFVDEEEGRT 157 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D TNVL+F A D ++ DIVL ++E EA GK H HL Sbjct: 158 LNHTYRGKDYATNVLTFSYAETEDDPVAA----DIVLCCPVVEQEAKDQGKPLRAHYAHL 213 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 I+HG LH GYDH D A MEG+E +L LG DPY Sbjct: 214 IVHGALHAQGYDHEDPAQAEEMEGIETEVLAGLGFPDPYAD 254 >gi|77163774|ref|YP_342299.1| hypothetical protein Noc_0239 [Nitrosococcus oceani ATCC 19707] gi|123595149|sp|Q3JEH7|RRMF_NITOC RecName: Full=Probable rRNA maturation factor gi|76882088|gb|ABA56769.1| Protein of unknown function UPF0054 [Nitrosococcus oceani ATCC 19707] Length = 153 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 67/138 (48%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 V + + E+++ LN+ YR + TN+LSFP Sbjct: 14 ASVPLQADFLRWVKAALVNQSKAGEITIRVASESEAAQLNWRYRHKEGATNILSFPFEVP 73 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 S +LGD+V+ ++ EA K+ + H HL++HG LHLLG+DH + +A M Sbjct: 74 SCVSLDVPLLGDLVICAPVVAREALEQTKKEQAHWAHLVVHGVLHLLGFDHQQEVEAQQM 133 Query: 152 EGLERSILEDLGINDPYE 169 E LE +ILE LG DPYE Sbjct: 134 ESLEVTILESLGYPDPYE 151 >gi|161523783|ref|YP_001578795.1| fused unkown domain/putative metalloprotease [Burkholderia multivorans ATCC 17616] gi|221200107|ref|ZP_03573150.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221206740|ref|ZP_03579752.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221211287|ref|ZP_03584266.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|160341212|gb|ABX14298.1| protein of unknown function UPF0054 [Burkholderia multivorans ATCC 17616] gi|221168648|gb|EEE01116.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221173395|gb|EEE05830.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221180346|gb|EEE12750.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 237 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +L ++V+ +GDEI + K ++ + F ++++ F T Sbjct: 87 EQELDLSVQ---YGDEITSEVRKTLPKRKLIAEWLEPALFA---NAQITVRFVGETEGRT 140 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F ++GD+VL ++E EA K H HL Sbjct: 141 LNAGYRHKDYPTNVLTFAY----DPAPDGTVIGDLVLCCPVVEKEAREQDKPLAAHYAHL 196 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 197 LVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR 237 >gi|238755073|ref|ZP_04616421.1| metalloprotease [Yersinia ruckeri ATCC 29473] gi|238706777|gb|EEP99146.1| metalloprotease [Yersinia ruckeri ATCC 29473] Length = 127 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 + E+++ D LN YRG DK TNVLSFP F + +LGD+++ + Sbjct: 4 QFQEESEVTIRVVDEAESHELNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQ 61 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++E EA K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 62 VVEQEAVEQNKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQGLGYPDPY 120 >gi|329897208|ref|ZP_08271948.1| heat shock protein involved in translation [gamma proteobacterium IMCC3088] gi|328921363|gb|EGG28757.1| heat shock protein involved in translation [gamma proteobacterium IMCC3088] Length = 157 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 83/158 (52%), Gaps = 11/158 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + V+ A GD + F + VS + + L DS+ I+ L Sbjct: 1 MNISVCVDRACGGDSPD-----DDSFRRWVSAALKACRKSGH----VDLKIVDSNEIQYL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG D TNVLSFP+ G S +LGD+ L +IE EA+ K +H HL Sbjct: 52 NKTYRGKDAATNVLSFPSELPP--GIPSDLLGDLALCTPVIEREASEQRKVLMHHWAHLT 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHL+G+DH++D DA +ME LE IL L + +PY Sbjct: 110 IHGTLHLIGFDHIEDTDAEIMESLEIDILASLSLPNPY 147 >gi|254435169|ref|ZP_05048676.1| conserved hypothetical protein TIGR00043 [Nitrosococcus oceani AFC27] gi|207088280|gb|EDZ65552.1| conserved hypothetical protein TIGR00043 [Nitrosococcus oceani AFC27] Length = 143 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 67/138 (48%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 V + + E+++ LN+ YR + TN+LSFP Sbjct: 4 ASVPLQADFLRWVKAALVNQSKAGEITIRVASESEAAQLNWRYRHKEGATNILSFPFEVP 63 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 S +LGD+V+ ++ EA K+ + H HL++HG LHLLG+DH + +A M Sbjct: 64 SCVSLDVPLLGDLVICAPVVAREALEQTKKEQAHWAHLVVHGVLHLLGFDHQQEVEAQQM 123 Query: 152 EGLERSILEDLGINDPYE 169 E LE +ILE LG DPYE Sbjct: 124 ESLEVTILESLGYPDPYE 141 >gi|56460051|ref|YP_155332.1| metal-dependent hydrolase [Idiomarina loihiensis L2TR] gi|59799006|sp|Q5QYC3|RRMF_IDILO RecName: Full=Probable rRNA maturation factor gi|56179061|gb|AAV81783.1| Predicted metal-dependent hydrolase [Idiomarina loihiensis L2TR] Length = 163 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E V+ + + VEL++ + LN E+R D TNVLSFP F S Sbjct: 20 ENAVHSWVAATLDY-LQENDKAVELTVRIAALEEAQQLNNEFRNKDYATNVLSFP--FNS 76 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGD+V+ ++E EA K +H H++IHG LHLLGYDH++D +A ME Sbjct: 77 PVELPVTLLGDLVICQSVVEREAEEQQKSAIDHWTHMVIHGTLHLLGYDHIEDDEAEEME 136 Query: 153 GLERSILEDLGINDPYEV 170 +ER+IL LGI+DPY+ Sbjct: 137 QIERNILASLGISDPYQT 154 >gi|154254050|ref|YP_001414874.1| hypothetical protein Plav_3619 [Parvibaculum lavamentivorans DS-1] gi|171769693|sp|A7HZ84|RRMF_PARL1 RecName: Full=Probable rRNA maturation factor gi|154158000|gb|ABS65217.1| protein of unknown function UPF0054 [Parvibaculum lavamentivorans DS-1] Length = 185 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 86/168 (51%), Gaps = 15/168 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++++ E W +A + + + EL +V D + L Sbjct: 22 LEIEVLREAGDWESSTD------ETVRRAAEHAYAVAR--GDESAELCIVLGDDALVAKL 73 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS-------LMLGDIVLAYEIIEIEANVLGKEFE 123 N YRG + PTNVLSFP A G +LGD+VLA E I EA K+F Sbjct: 74 NKAYRGKEGPTNVLSFPAAEMPDTGAPEAVFGGATPLLGDVVLARETIAREALDQNKKFA 133 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HL HL +HG LHLLG+DH++D DA ME LER ILEDLGI DPY D Sbjct: 134 DHLSHLTVHGVLHLLGHDHMEDVDADEMEALERDILEDLGIADPYGAD 181 >gi|331014757|gb|EGH94813.1| metal-binding heat shock protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 166 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E DE R CE+ + ++ EL++ D Sbjct: 3 ELDLQVASETPA-PDEALFRLWCEMGLRQRSAD------------SELTIRLVDETEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|259415656|ref|ZP_05739577.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] gi|259348886|gb|EEW60648.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B] Length = 170 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 66/173 (38%), Positives = 90/173 (52%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L + +E+A W D L EV A ++ L + + E++++ D RI L Sbjct: 1 MILDVVIEDARW-DAAALNKQAEVAVAATLAYL-----ELLDEDWEVTVLGCDDARIADL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R KPTNVLS+P D LGDI ++YE EA + Sbjct: 55 NAEFREKPKPTNVLSWPAQELAAAQEGGQPAPPEVDFMGDAALGDIAISYETCMKEAEIA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E+H+ HL++HG LHLLGYDH+ D DA VME LE IL LGI DPY ++ Sbjct: 115 QKPPEDHIRHLLVHGTLHLLGYDHIRDGDATVMETLEVGILGKLGIPDPYIIE 167 >gi|119504407|ref|ZP_01626487.1| Predicted metal-dependent hydrolase [marine gamma proteobacterium HTCC2080] gi|119459915|gb|EAW41010.1| Predicted metal-dependent hydrolase [marine gamma proteobacterium HTCC2080] Length = 163 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 + + F + V+ S ELS+ +++ + LN +R PTNVLSFP Sbjct: 13 IEAPEDESFKRWVNATCSMLGADPTAQPELSIRISNTDEMTQLNQRFRNRSGPTNVLSFP 72 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 ++ C +LGDIV+ ++ EA GK H HL +HG LHLLGYDH D Sbjct: 73 ADISAEIPCE--LLGDIVICSPLVWKEAQEQGKPPICHWAHLTVHGVLHLLGYDHETDDA 130 Query: 148 ACVMEGLERSILEDLGINDPY 168 A ME LE IL+ G +DPY Sbjct: 131 AQNMEALETQILQQFGCSDPY 151 >gi|217969296|ref|YP_002354530.1| unkown domain/ metalloprotease fusion protein [Thauera sp. MZ1T] gi|217506623|gb|ACK53634.1| protein of unknown function UPF0054 [Thauera sp. MZ1T] Length = 274 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS------LMLGDIVLAYE 109 ++++ LN +YRG D TNVL+F A + GD+VL Sbjct: 152 QVTVRLVGEAEGRALNRDYRGKDYATNVLTFAYAEGEDLPGLPAAAADVPLAGDLVLCVP 211 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++ EA GK E H HL++HG LHL GYDH ++ +A ME LE +IL +LG DPY Sbjct: 212 VVVREAAAQGKTLEAHFAHLVVHGMLHLQGYDHENETEAAEMEALETAILRELGYADPYA 271 Query: 170 V 170 + Sbjct: 272 L 272 >gi|90421994|ref|YP_530364.1| hypothetical protein RPC_0470 [Rhodopseudomonas palustris BisB18] gi|122477512|sp|Q21C41|RRMF_RHOPB RecName: Full=Probable rRNA maturation factor gi|90104008|gb|ABD86045.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris BisB18] Length = 168 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 87/157 (55%), Gaps = 3/157 (1%) Query: 16 AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 A E + D E + +A+ + + EL+++ TD ++TLN +R Sbjct: 8 ATEVLIVADCWQAEAEAEAIVLRAIEAAAAMTDADTADA-ELAVMLTDDAGVQTLNANWR 66 Query: 76 GIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 GIDKPTNVLSFP D MLGDI +AY+ EA+ GK F++HL HL +HG Sbjct: 67 GIDKPTNVLSFPALQPEGDAPDDAPKMLGDIAIAYQTTRREADDEGKPFDHHLSHLAVHG 126 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 FLHL+GYDH D +A ME LER IL LG+ DPY Sbjct: 127 FLHLVGYDHEKDAEAEAMESLEREILAQLGVPDPYAD 163 >gi|83746118|ref|ZP_00943173.1| Hypothetical Metal-Binding Protein [Ralstonia solanacearum UW551] gi|207742382|ref|YP_002258774.1| hypothetical protein RSIPO_00569 [Ralstonia solanacearum IPO1609] gi|83727301|gb|EAP74424.1| Hypothetical Metal-Binding Protein [Ralstonia solanacearum UW551] gi|206593772|emb|CAQ60699.1| hypothetical protein RSIPO_00569 [Ralstonia solanacearum IPO1609] Length = 254 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + L L + V++ GD + K + I+ F +L++ F D Sbjct: 99 ADAEMLTLDLTVQH---GDALKAAARKACPKQKDIEAWIAPALFAD---AQLNVRFVDEE 152 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YRG D TNVL+F A D S+ D+VL ++E EA K H Sbjct: 153 EGRTLNRTYRGKDYATNVLTFSYAETEHDPVSA----DVVLCCPVVEKEAKDQDKPLRAH 208 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LH GYDH + +A MEG+E ++L +LG DPY Sbjct: 209 YAHLIVHGALHAQGYDHENPAEAKEMEGIETAVLAELGFPDPYAD 253 >gi|145558836|sp|Q39D49|RRMF_BURS3 RecName: Full=Probable rRNA maturation factor Length = 172 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 80/166 (48%), Gaps = 13/166 (7%) Query: 5 KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + P LDL + +GDEI + K ++ I F +L++ F Sbjct: 19 ALREPELDLSV-----QYGDEITSDVRKTLPKRKLIAEWIEPALFA---SAQLTVRFVGE 70 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 TLN YR D PTNVL+F A ++GD+VL ++E EA+ GK Sbjct: 71 EEGRTLNAGYRHKDYPTNVLTFAYDAAP----DGTVIGDLVLCCPVVEKEAHEQGKPLTA 126 Query: 125 HLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 H HL++HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 127 HYAHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 172 >gi|330987618|gb|EGH85721.1| metal-binding heat shock protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 166 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E + D+ R CE+ + ++ EL++ D + Sbjct: 3 ELDLQIASETSA-PDKARFRLWCEMGLRQRSAD------------SELTIRLVDENEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG PY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPAPYAED 150 >gi|77461173|ref|YP_350680.1| putative metalloprotease [Pseudomonas fluorescens Pf0-1] gi|123603159|sp|Q3K6B5|RRMF_PSEPF RecName: Full=Probable rRNA maturation factor gi|77385176|gb|ABA76689.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 164 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 84/162 (51%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E E R CE+ + ++ E+++ D Sbjct: 3 ELDLQIATEAPA-PTEAEFRQWCELALRQRTAD------------SEMTIRLVDEDEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D TNVLSFP + +LGD+V+ ++E EA GKE + H HL Sbjct: 50 LNHTWRHKDYATNVLSFPAE-VPDEFLDIPLLGDLVICVAVVEREATEQGKELKAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER +L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEALERELLAELGYPDPYADD 150 >gi|146284075|ref|YP_001174228.1| putative metalloprotease [Pseudomonas stutzeri A1501] gi|166232639|sp|A4VQY5|RRMF_PSEU5 RecName: Full=Probable rRNA maturation factor gi|145572280|gb|ABP81386.1| predicted metal-dependent hydrolase [Pseudomonas stutzeri A1501] gi|327482392|gb|AEA85702.1| putative metalloprotease [Pseudomonas stutzeri DSM 4166] Length = 160 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 80/162 (49%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ A L+ CE+ + + EL++ D Sbjct: 3 ELDLQCAS-TGAAPAAADLQRWCELALRQ------------RSGDSELTIRLVDEEEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D TNVLSFP A + +LGD+V+ ++E EA GK + H HL Sbjct: 50 LNRTWRQKDYATNVLSFP-ADVPDEFLDIPLLGDLVICVPVVEREAAEQGKTLDAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH++D +A ME LER +L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIEDAEAEEMEALERQLLAELGHPDPYAED 150 >gi|86136019|ref|ZP_01054598.1| hypothetical protein MED193_17889 [Roseobacter sp. MED193] gi|85826893|gb|EAQ47089.1| hypothetical protein MED193_17889 [Roseobacter sp. MED193] Length = 170 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 66/173 (38%), Positives = 92/173 (53%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L+I +E++ W E L L A+ + + + E++L+ D +I L Sbjct: 1 MALEITIEDSRW-QEAGLEALAHQAVGAALGH-----FGLDPEDCEIALLACDDDQIAGL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R PTNVLS+P +D + LGDI +AY+ EA+ Sbjct: 55 NAEFREKPVPTNVLSWPAEDLAASEPGGQPAVPEADFTGEIPLGDIAIAYDTCLREADAA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K +HL HLI+HG LHLLGYDH+ D DA VMEGLE IL +LG++DPY VD Sbjct: 115 NKPLADHLRHLIVHGVLHLLGYDHISDLDATVMEGLEVEILGNLGLDDPYTVD 167 >gi|254516560|ref|ZP_05128619.1| putative metalloprotease H16_A0526 [gamma proteobacterium NOR5-3] gi|219674983|gb|EED31350.1| putative metalloprotease H16_A0526 [gamma proteobacterium NOR5-3] Length = 163 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 2/147 (1%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E ++ + +A + + + E +L D+ ++ LN +YRG D+PTNVL Sbjct: 9 ETLEKSPDDQTLLRAAECALLQSNANRHKHWEAALRIVDAKEMQQLNAQYRGKDRPTNVL 68 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP + + +LGDIV+ +++ EA GK H H++IHG LHLLG+DH Sbjct: 69 SFPADLPAD--VTLDLLGDIVICAPVVQEEAATQGKPLAAHWDHMLIHGVLHLLGFDHES 126 Query: 145 DKDACVMEGLERSILEDLGINDPYEVD 171 D +A ME LE L LG PY+ D Sbjct: 127 DAEATHMELLETQALATLGWPCPYQAD 153 >gi|94676735|ref|YP_588542.1| hypothetical protein BCI_0064 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|145572748|sp|Q1LU22|RRMF_BAUCH RecName: Full=Probable rRNA maturation factor gi|94219885|gb|ABF14044.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 155 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 13/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ+A ++ L + + E+++ D L Sbjct: 6 LDLQVACDHRCNLPSEDL-----------FMYWLYMVLPLFRKKAEVTIRLVDEAESYNL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG + TNVLSFP F + ++LGDI++ +++E EA K E + H++ Sbjct: 55 NKIYRGQNHSTNVLSFP--FKAPSPVKLVLLGDIIICRQVVEREAQEQNKILEAYWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH +++A ME LE I+ LG +PYE + Sbjct: 113 IHGSLHLLGYDHFIEQNAKKMEYLETKIMHKLGYLNPYETE 153 >gi|117622868|ref|YP_851781.1| putative metalloprotease [Escherichia coli APEC O1] gi|145558845|sp|A1A8S7|RRMF_ECOK1 RecName: Full=Probable rRNA maturation factor YbeY gi|115511992|gb|ABJ00067.1| putative metal-dependent hydrolase [Escherichia coli APEC O1] Length = 155 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDT 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 49 AESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ L DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALDYEDPYIAE 153 >gi|294670470|ref|ZP_06735350.1| hypothetical protein NEIELOOT_02187 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307749|gb|EFE48992.1| hypothetical protein NEIELOOT_02187 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 172 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS---S 93 + + ++SL+ D N +YRG D TNVLSF + Sbjct: 33 ERDFYRWAWQAVKQHHRHADISLLLLDEEPARACNRDYRGKDYATNVLSFALDEGETMYA 92 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 S + GD+V+ +++ EA GK E H HL IHG LHL+GYDH++D +A ME Sbjct: 93 PALSDGLHGDLVICPQVVFKEAAEQGKTPEQHFAHLTIHGVLHLMGYDHIEDTEAEEMEA 152 Query: 154 LERSILEDLGINDPYEVD 171 LE +L L DPY D Sbjct: 153 LETRLLNQLAYPDPYSQD 170 >gi|207727982|ref|YP_002256376.1| hypothetical protein RSMK04405 [Ralstonia solanacearum MolK2] gi|206591225|emb|CAQ56837.1| hypothetical protein RSMK04405 [Ralstonia solanacearum MolK2] Length = 254 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + L L + V++ GD + K + I+ F +L++ F D Sbjct: 99 ADAEMLTLDLTVQH---GDALKAAARKACPKQKDIEAWIAPALFAD---AQLNVRFVDEE 152 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YRG D TNVL+F A D S+ D+VL ++E EA K H Sbjct: 153 EGRTLNRTYRGKDYATNVLTFSYAETEHDPVSA----DVVLCCPVVEKEAKDQDKPLRAH 208 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HLI+HG LH GYDH + +A MEG+E ++L +LG DPY Sbjct: 209 YAHLIVHGALHAQGYDHENPAEAKEMEGIETAVLAELGFPDPYAD 253 >gi|257092863|ref|YP_003166504.1| hypothetical protein CAP2UW1_1247 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045387|gb|ACV34575.1| protein of unknown function UPF0054 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 144 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 18/160 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +Q A + +RT + ++++ F D+ LN Sbjct: 1 MQYACLANELPQKPQVRTWARAAID-----------VDGKRRGQITVRFVDADEARRLNR 49 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +YR D TNVLSFP A ++ GD+VL ++ EA GK E H HLI+H Sbjct: 50 DYRHRDYATNVLSFPYAR------EPVVCGDLVLCAPVVAREAAEQGKPLEAHYAHLIVH 103 Query: 133 GFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDPYEVD 171 G LHL GYDH A ME ER +L LG DPY ++ Sbjct: 104 GLLHLQGYDHETSARQAAEMESRERRVLHALGYPDPYAME 143 >gi|319779780|ref|YP_004139256.1| hypothetical protein Mesci_0031 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165668|gb|ADV09206.1| protein of unknown function UPF0054 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 166 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 76/163 (46%), Positives = 93/163 (57%), Gaps = 7/163 (4%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 N+P +D+ IAVE W DE L L + A + G ELSLVF+D Sbjct: 11 NIP-VDIDIAVEAGNWPDEASLTRLVDRAVKAAFAETGVAGR------SELSLVFSDDAH 63 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ LN +RG DKPTNVLSFP + G MLGDIVLA E + EA + K ENH+ Sbjct: 64 IQVLNAGWRGKDKPTNVLSFPAFPFAQGGPLPPMLGDIVLAAETVAHEAVLEDKPVENHI 123 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL+IHG LHLLGYDH + +A ME +ER+ L L I DPY Sbjct: 124 THLVIHGLLHLLGYDHETEAEAEAMEAVERAALARLAIPDPYA 166 >gi|304310520|ref|YP_003810118.1| Protein of unknown function UPF0054 [gamma proteobacterium HdN1] gi|301796253|emb|CBL44461.1| Protein of unknown function UPF0054 [gamma proteobacterium HdN1] Length = 166 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 79/160 (49%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALW--GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 LD + E+ + E + F AV+ EL+L Sbjct: 4 LDFVLQNEDEIEGVPSEADCLRWAQAAFD-AVTQKSPLNPADNPIPWELTLRVVLPTESR 62 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYRG D PTNVLSFP F + G S +LGD+ + EI+E EA GK H H Sbjct: 63 ELNREYRGKDAPTNVLSFP--FEAPPGISIPILGDLAICAEIVEQEAREQGKASNAHWAH 120 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++IHG LHLLG+DH+ D +A ME LE S+L I DPY Sbjct: 121 MVIHGTLHLLGFDHIHDDEADAMEALEISLLAGFDITDPY 160 >gi|237798428|ref|ZP_04586889.1| metal-binding heat shock protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021280|gb|EGI01337.1| metal-binding heat shock protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 166 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E + E R CE+ + ++ EL++ D Sbjct: 3 ELDLQVASETSA-PSEAQFRLWCEMGLRQRSAD------------SELTVRLVDETEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKDYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSIDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHLDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|300705109|ref|YP_003746712.1| metalloprotease [Ralstonia solanacearum CFBP2957] gi|299072773|emb|CBJ44128.1| Putative metalloprotease [Ralstonia solanacearum CFBP2957] Length = 254 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + L L + V++ GD + K + I+ F +L++ F D Sbjct: 99 ADAEMLTLDLTVQH---GDALKGAARKACPKQKDIEAWIAPALFAD---AQLNVRFVDEE 152 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 TLN YRG D TNVL+F A D S+ D+VL ++E EA GK H Sbjct: 153 EGRTLNRTYRGKDYATNVLTFSYAETEHDPVSA----DVVLCCPVVEKEAKDQGKPLRAH 208 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HLI+HG LH GYDH + +A MEG+E ++L +LG DPY Sbjct: 209 YAHLIVHGALHAQGYDHENPAEAKEMEGIETAVLTELGFPDPY 251 >gi|226951970|ref|ZP_03822434.1| metalloprotease [Acinetobacter sp. ATCC 27244] gi|226837308|gb|EEH69691.1| metalloprotease [Acinetobacter sp. ATCC 27244] Length = 161 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + F + E+ + D L Sbjct: 1 MKINLSLQQDFQTAELPLK---RGQIKKHIETALRHVGF--DADCEIGIACVDLAESHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ + LGD+V+ ++ EA K +H H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEKMLSLLDAEPLGDLVICMPVVLQEAKEQQKTPMDHFTH 115 Query: 129 LIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDPYEVD 171 L++HG LHLLGYDH + DA ME LE +IL+ L I +PY+ D Sbjct: 116 LLVHGILHLLGYDHETSESDAEEMEALEIAILKKLNIANPYQAD 159 >gi|299067910|emb|CBJ39124.1| Putative metalloprotease [Ralstonia solanacearum CMR15] Length = 255 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 76/160 (47%), Gaps = 10/160 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + V++ GD + + K + I+ F +L++ F D T Sbjct: 104 MLTLDLTVQH---GDALKAAARKALPKHKDIEAWIAPALFAD---AQLNVRFVDEEEGRT 157 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D TNVL+F A D ++ DIVL ++E EA GK H HL Sbjct: 158 LNHTYRGKDYATNVLTFSYAETEDDPVAA----DIVLCCPVVEKEAKDQGKPLRAHYAHL 213 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 I+HG LH GYDH D A MEG+E +L LG DPY Sbjct: 214 IVHGALHAQGYDHEDPAQAEEMEGIETEVLAGLGFPDPYA 253 >gi|212638691|ref|YP_002315211.1| putative metal-dependent hydrolase [Anoxybacillus flavithermus WK1] gi|212560171|gb|ACJ33226.1| Predicted metal-dependent hydrolase [Anoxybacillus flavithermus WK1] Length = 194 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 7/148 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE + T ++ + + +K V + E+S+ F D+ +I +N +YRG D+PT+V Sbjct: 47 DETNEMTEEQMNLIEQLLQHAAKEEHV-PDEAEVSVTFVDNEKIREINRDYRGKDQPTDV 105 Query: 84 LSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 +SF + + +LGDI+++ +A G F L L +HGFLHL Sbjct: 106 ISFALEEMGEEEIAIVGADVPPVLGDIIISVPKAREQAEQYGHSFMRELGFLAVHGFLHL 165 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH +++ VM + +L+ G+ Sbjct: 166 LGYDHETEEEEKVMFAKQEQLLQQFGLT 193 >gi|307252587|ref|ZP_07534481.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859909|gb|EFM91928.1| metalloprotease [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 159 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 8/159 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN+ +L +L ++ + L + E+++ D Sbjct: 1 MIDLQIACENSE-----NLPSLEQLTLWVQ-TALAYEAQTEDFPETEMTIRIVDEAESHE 54 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H HL Sbjct: 55 LNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESHWAHL 112 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH++D++A MEGLE I++ LG DPY Sbjct: 113 AIHGTLHLLGYDHIEDEEAEEMEGLETEIMQKLGFADPY 151 >gi|149907592|ref|ZP_01896339.1| hypothetical protein PE36_06882 [Moritella sp. PE36] gi|149809262|gb|EDM69191.1| hypothetical protein PE36_06882 [Moritella sp. PE36] Length = 153 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 15/162 (9%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA EN E L V + ++ E+++ D+ + Sbjct: 5 LDLQIATENEQKLPTEAQLNAWLNAVVKR------------FQDSAEVTIRIVDNTESQQ 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG DKPTNVLSFP F +G +LGD+++ +++E EA K H H+ Sbjct: 53 LNNDYRGKDKPTNVLSFP--FEVPEGIELDLLGDLIICKQVVEREAKEQQKPLTAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+ D++A MEGLE I+ +L DPY + Sbjct: 111 VIHGTLHLLGYDHIIDEEAEEMEGLETEIMLELEFEDPYITE 152 >gi|294649234|ref|ZP_06726672.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292824901|gb|EFF83666.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 161 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + F + E+ + D L Sbjct: 1 MKINLSLQQDFQTAELPLK---RSQIKKHIETALRHVGF--DADCEIGIACVDLAESHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ + LGD+V+ ++ EA K +H H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEMLSLLDAEPLGDLVICMPVVLQEAEEQQKTPMDHFTH 115 Query: 129 LIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDPYEVD 171 L++HG LHLLGYDH + DA ME LE +IL+ L I +PY+ D Sbjct: 116 LLVHGILHLLGYDHETSESDAEEMEALEIAILKKLNIANPYQAD 159 >gi|290968420|ref|ZP_06559959.1| metalloprotein, YbeY/ UPF0054 family [Megasphaera genomosp. type_1 str. 28L] gi|290781416|gb|EFD94005.1| metalloprotein, YbeY/ UPF0054 family [Megasphaera genomosp. type_1 str. 28L] Length = 157 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIE 68 +++ I E A + + + K ++ + S+ V E+S++ + I Sbjct: 1 MNITITYEEA---------SFQQDAYEKIITRVCSEAALVYGLGPKAEISILLCHNEYIH 51 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YR ID+PT+VLSF DG +LGDI+++ E + +A G FE Sbjct: 52 ALNKQYRHIDRPTDVLSFALNEGEDDGYDGPDTALLGDIIISLEKVAEQAAEYGHSFERE 111 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +L IHG LH+LGYDH++ +D M G E IL LG Sbjct: 112 LAYLTIHGMLHILGYDHMEPEDKAEMRGEEEFILRRLGY 150 >gi|237746579|ref|ZP_04577059.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377930|gb|EEO28021.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 176 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 71/172 (41%), Gaps = 30/172 (17%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + D L + V + +++L F D+ LN +YRG D Sbjct: 12 QYPDPRFKDILTRQKLRRWVQASLQM-------PADITLRFVDAEEGRALNRDYRGKDYA 64 Query: 81 TNVLSFPTAFAS----------SDGCSSLML-------------GDIVLAYEIIEIEANV 117 TNVL+FP D + L L DIVL +++E EA Sbjct: 65 TNVLTFPYDDMEAFDLSAIGLSGDDPAPLELTSLATSPGAQTARADIVLCTDVLEAEAKE 124 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K + H HL++HG LH GYDH +D +A ME LE IL LG DPY Sbjct: 125 QAKSLDAHAAHLVVHGVLHAQGYDHTNDAEAGEMETLETKILAKLGYPDPYR 176 >gi|90416862|ref|ZP_01224791.1| hypothetical protein GB2207_06363 [marine gamma proteobacterium HTCC2207] gi|90331209|gb|EAS46453.1| hypothetical protein GB2207_06363 [marine gamma proteobacterium HTCC2207] Length = 164 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 14/160 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+Q A + DE ++ + + ELS+ D Sbjct: 5 IDIQKACASEDSPDEDSIKRWLGAAIR------------DERDECELSIRIVDEQESADF 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG TNVLSFP + + +LGD+V+ ++ EA+ K + H H++ Sbjct: 53 NQRYRGKSGATNVLSFPFDAVTPEPLP--ILGDLVICAPVVIREASDQQKTVDAHWAHIV 110 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 IHG LHLLGYDH++D+DA MEGLE I+ L PY + Sbjct: 111 IHGVLHLLGYDHIEDQDAEQMEGLETEIMLKLDFPAPYRI 150 >gi|330505000|ref|YP_004381869.1| putative metalloprotease [Pseudomonas mendocina NK-01] gi|328919286|gb|AEB60117.1| putative metalloprotease [Pseudomonas mendocina NK-01] Length = 159 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 82/160 (51%), Gaps = 14/160 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A + DE LR CE+ + ++ EL++ D Sbjct: 3 ELDLQLAT-DGQHPDEAQLRRWCELALRQRTAD------------SELTIRLVDEAEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D TNVLSFP +LGD+V+ ++E EA GK + H HL Sbjct: 50 LNHTWRHKDYATNVLSFPAEIPDGI-LDIPLLGDLVICVPVVEREAAEQGKALDAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +IHG LHLLGYDH+++ +A ME LER +L +LG DPY Sbjct: 109 VIHGCLHLLGYDHIEEDEALEMEELERQLLAELGHPDPYA 148 >gi|325478360|gb|EGC81475.1| translation metalloprotein YbeY [Anaerococcus prevotii ACS-065-V-Col13] Length = 448 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 2/130 (1%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 ++ K V+ ++ E+ E+S+ F D I LN E+RG+D+PT+VLSFP Sbjct: 16 DIDLEKTVAEVLKTEGL--EDNYEVSITFVDRKEIHKLNKEFRGVDRPTDVLSFPLDDEI 73 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +MLGDIV+ ++ + +A G +++L H LHLLGYDH+++ + M Sbjct: 74 LIPNEDIMLGDIVICLDVAKDQAIEFGHSLRREVMYLTCHSTLHLLGYDHMEEDEKREMR 133 Query: 153 GLERSILEDL 162 E+ ++++L Sbjct: 134 TREKEVMKNL 143 >gi|332969607|gb|EGK08625.1| metal-dependent hydrolase [Kingella kingae ATCC 23330] Length = 170 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 5/171 (2%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M + + P L +Q + I+ + +V K I ELSLV Sbjct: 1 MKKQTKHFPFLRVQ---QQRFALAYINNSSANDVPSEKQFYQWIWHALKNFYRYAELSLV 57 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML--GDIVLAYEIIEIEANVL 118 D N +YR D TNVLSF + GD+++ +++ EA Sbjct: 58 LLDEEAARQYNRDYRQKDYATNVLSFAHNEGEFSFVEQDNILRGDLIICPQVVAKEAAEQ 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK +H HL+IHG LHL+G+DH+ D +A ME LE +L L I +PY Sbjct: 118 GKSLHDHFAHLVIHGTLHLIGFDHIQDDEAEQMEQLETELLAQLRIANPYA 168 >gi|254496479|ref|ZP_05109355.1| metal dependent hydrolase [Legionella drancourtii LLAP12] gi|254354296|gb|EET12955.1| metal dependent hydrolase [Legionella drancourtii LLAP12] Length = 158 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 12/161 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+Q A + L DE ++++ S + EL++ F + I L Sbjct: 5 IDIQNATDEPLAIDENE------------ITHVASLALRDYQKKAELTVRFVNHEEITYL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR +KPTNVL+FP+ +LGD+++ +++ E+N L K E H ++ Sbjct: 53 NNTYRKKNKPTNVLAFPSELPLEIQLECPLLGDVIICPDVLLAESNELNKTLEAHWSLIL 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+ D+DA VM+ +E +L +LG +PY+ + Sbjct: 113 IHGILHLLGYDHIKDEDAAVMQSIEIKLLAELGYANPYDAE 153 >gi|145572763|sp|Q1GK93|RRMF_SILST RecName: Full=Probable rRNA maturation factor Length = 170 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L + +E+A W D L + + ++ L +++ E++++ D RI L Sbjct: 1 MILDVVIEDARW-DAAALEKQAQEAVSATLAYL-----ELEDEDWEVTVLGCDDARIADL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R KPTNVLS+P D LGDI ++Y+ EAN+ Sbjct: 55 NAEFREKPKPTNVLSWPAQELAAAQDGGQPTPPEVDFMGDAALGDIAISYDTCVKEANLA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E+H+ HL++HG LHLLGYDH+ D DA +ME LE IL LGI DPY ++ Sbjct: 115 HKSREDHVRHLLVHGTLHLLGYDHIRDGDATIMETLEVGILGKLGIPDPYIIE 167 >gi|115522233|ref|YP_779144.1| hypothetical protein RPE_0204 [Rhodopseudomonas palustris BisA53] gi|122298061|sp|Q07V70|RRMF_RHOP5 RecName: Full=Probable rRNA maturation factor gi|115516180|gb|ABJ04164.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris BisA53] Length = 172 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 3/157 (1%) Query: 16 AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 A E + D + E V +A+ + + EL+++ +D + TLN +R Sbjct: 7 ATEVLIVADCWQAESEAEAVVLRAIEAA-AAMVDAETADAELAVMLSDDAGVRTLNANWR 65 Query: 76 GIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 G+DKPTNVLSFP S+ + MLGDI +AYE EA+ GK F++HL HL +HG Sbjct: 66 GLDKPTNVLSFPALQPSATMPDDAPRMLGDIAIAYETTRREADDEGKPFDHHLSHLAVHG 125 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 FLHL+GYDH + +A ME LER IL LG+ DPY Sbjct: 126 FLHLVGYDHETESEAEAMEQLERRILAQLGVPDPYAD 162 >gi|284009229|emb|CBA76319.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 164 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 15/162 (9%) Query: 11 LDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A ++ DE + E + + E+++ D + Sbjct: 15 LDLQLACSDHNGLPDETTFQHWLEAFLPQ------------FQAESEITIRIVDIAESQY 62 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D PTNVLSFP F + D +LGD+V+ +++E EA K + H H+ Sbjct: 63 LNLTYRGKDNPTNVLSFP--FEALDNIPLPLLGDLVICRQVVEKEAIEQHKTLDAHWAHM 120 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH +D +A ME +E I++ LG DPY+ + Sbjct: 121 VIHGCLHLLGYDHQNDFEAEEMETIETEIMQKLGYPDPYQHE 162 >gi|329847362|ref|ZP_08262390.1| uncharacterized protein family UPF0054 family protein [Asticcacaulis biprosthecum C19] gi|328842425|gb|EGF91994.1| uncharacterized protein family UPF0054 family protein [Asticcacaulis biprosthecum C19] Length = 160 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 7/162 (4%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P +D++I E W D + V AV+ + F + ++ ++ D ++ Sbjct: 3 PLIDIEI--EEDGWLDALP---DAVDVVETAVTAALKAVNFTDQ--ADVVVLLCDDAEMK 55 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN EYR DK TNVLSFP + LGD+ L + EA GK +NH++H Sbjct: 56 RLNAEYRNKDKATNVLSFPAPKSMQIKGVLDHLGDMALGLQTCVREAREQGKTLKNHVLH 115 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 L +HG LHLLGYDH+ D +A ME LERSIL++LG+ DPY Sbjct: 116 LSVHGTLHLLGYDHLHDAEAETMENLERSILKNLGVADPYAD 157 >gi|89069598|ref|ZP_01156937.1| hypothetical protein OG2516_13526 [Oceanicola granulosus HTCC2516] gi|89044796|gb|EAR50896.1| hypothetical protein OG2516_13526 [Oceanicola granulosus HTCC2516] Length = 163 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + VE A W + + L L E A + L + ++ E++L+ D RI L Sbjct: 1 MSVDVIVEEARW-EAVGLAALAEPAVAATLERL-----GLDPDLYEVTLLGCDDARIAAL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF---------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 N ++RG PTNVLS+P+ + LGDI +AYE EA+ GK Sbjct: 55 NGDFRGKPAPTNVLSWPSEERGARIAGETPLPPEPTDPELGDIAIAYETCAREASEAGKP 114 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E H HLI+HG LHLLGYDH D DA +MEGLE IL LG+ DPY Sbjct: 115 LETHATHLIVHGTLHLLGYDHERDGDATLMEGLEVEILGKLGLPDPY 161 >gi|56963443|ref|YP_175174.1| metal-dependent hydrolase [Bacillus clausii KSM-K16] gi|59799080|sp|Q5WHE2|RRMF_BACSK RecName: Full=Probable rRNA maturation factor gi|56909686|dbj|BAD64213.1| metal-dependent hydrolase [Bacillus clausii KSM-K16] Length = 160 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 9/154 (5%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 + DE + ++ K V N ++ + + E+S+ FT I LN E+RGID Sbjct: 3 DVELNDEGQFLSSEQLQLVKDVLNHAAQEVSLSQQS-EVSVTFTTEEDIHELNREHRGID 61 Query: 79 KPTNVLSFPTAFASSDGCS--------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +PT+VLSF +SD +LGDIV++ +E +A G FE L L+ Sbjct: 62 RPTDVLSFALNDETSDFDPTFHEELGLPNLLGDIVISVPHVERQAADYGHSFERELAFLV 121 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +HGFLHLLGYDH+++++ M + IL+ G+ Sbjct: 122 VHGFLHLLGYDHMNEEEEKQMFTKQEEILQSYGL 155 >gi|83854732|ref|ZP_00948262.1| hypothetical protein NAS141_08391 [Sulfitobacter sp. NAS-14.1] gi|83842575|gb|EAP81742.1| hypothetical protein NAS141_08391 [Sulfitobacter sp. NAS-14.1] Length = 174 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 64/171 (37%), Positives = 89/171 (52%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + E+ W + L TLC A+++L + + E++++ D I TLN Sbjct: 4 LDVIEEDPRWA-GLDLDTLCPRAMRAALAHLS-----LDADTAEVTVLACDDAHIATLNA 57 Query: 73 EYRGIDKPTNVLSFPTAF--ASSDGCSSLM----------LGDIVLAYEIIEIEANVLGK 120 ++R PTNVLS+P A DG L LGDI ++Y+ EA G+ Sbjct: 58 DFRDKPTPTNVLSWPAEERGAVRDGELPLPVTPGFDNMLELGDIAISYDTCHAEAEAAGR 117 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H+ HLI+HG LHLLGYDH D DA +ME LE IL LG++DPY D Sbjct: 118 PMADHVTHLIVHGLLHLLGYDHERDGDATLMERLEVEILGKLGLDDPYRDD 168 >gi|254295427|ref|YP_003061450.1| hypothetical protein Hbal_3085 [Hirschia baltica ATCC 49814] gi|254043958|gb|ACT60753.1| protein of unknown function UPF0054 [Hirschia baltica ATCC 49814] Length = 161 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 97/164 (59%), Gaps = 8/164 (4%) Query: 5 KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 N L + + +E+ W + CE + A+ K + +VE ++ T+ Sbjct: 2 PDNPVILSVDLRIEDDGWSVALD---DCEAIIETALEAAAQKTG--ESGLVE--VLLTND 54 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 ++TLN ++RG DKPT+VLSFP AS G + LGD+ L ++ + +++ LG++F Sbjct: 55 AEMQTLNAQWRGKDKPTDVLSFPAEGASMPGMQT-FLGDLALGLDVAKADSDKLGRDFRL 113 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H++HL++HGFLHLLGYDH+ D +A MEGLE IL LG+ DPY Sbjct: 114 HVMHLLVHGFLHLLGYDHMSDDEANTMEGLEAQILAPLGLPDPY 157 >gi|255319764|ref|ZP_05360969.1| putative metalloprotease [Acinetobacter radioresistens SK82] gi|262380298|ref|ZP_06073452.1| metal-dependent hydrolase [Acinetobacter radioresistens SH164] gi|255303083|gb|EET82295.1| putative metalloprotease [Acinetobacter radioresistens SK82] gi|262297744|gb|EEY85659.1| metal-dependent hydrolase [Acinetobacter radioresistens SH164] Length = 159 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L ++++ E+ L+ K + + + + E+ + D + + L Sbjct: 1 MKLSLSLQQTFVAPELVLK---RAYLKKVIETTLR--HLDVKQDCEIGIACVDLDQSQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR DKPTNVLSFP+ ++ LGD+V+ ++ EA K H H Sbjct: 56 NLEYRRKDKPTNVLSFPSEIPEEILPMLAARPLGDLVICIPVVLQEAAEQQKVPVEHFTH 115 Query: 129 LIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH + D+DA ME LE IL LG+N+PY+ + Sbjct: 116 MLVHGTLHLLGYDHEISDEDADEMEALEIEILAKLGLNNPYQEE 159 >gi|147677227|ref|YP_001211442.1| putative metalloprotease [Pelotomaculum thermopropionicum SI] gi|189040627|sp|A5D3W2|RRMF_PELTS RecName: Full=Probable rRNA maturation factor gi|146273324|dbj|BAF59073.1| predicted metal-dependent hydrolase [Pelotomaculum thermopropionicum SI] Length = 152 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 4/133 (3%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS- 93 + +A ++ + +E E+SLVF D I LN +YRG+D PT+VLSF Sbjct: 21 LLTRAAQEVLKAEGYGEE--AEVSLVFVDDAYIHGLNRQYRGVDAPTDVLSFAMQEGEPL 78 Query: 94 -DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 G L+LGD+V++ + E +A G + +L +HG LHLLGYDH +++ +M Sbjct: 79 AGGEEELILGDVVISLQAAERQAGEYGHSLQREAAYLAVHGVLHLLGYDHQGEEERKIMR 138 Query: 153 GLERSILEDLGIN 165 E +L L + Sbjct: 139 RKEEEVLGRLNLT 151 >gi|307610143|emb|CBW99689.1| hypothetical protein LPW_14571 [Legionella pneumophila 130b] Length = 158 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 75/132 (56%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 ++ L S + EL++ D + LN YR +KPTNVL+FP + + Sbjct: 22 ITKLASLALRDHKQDAELTVRLVDVEEMTYLNHTYRKKNKPTNVLAFPCSLPENIELECP 81 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD+V+ E++ E+ K H ++IHG LHLLGYDH+ D++A +M+ LE +L Sbjct: 82 LLGDVVICPEVLLAESAQFNKSLHAHWSLILIHGVLHLLGYDHIKDEEASIMQMLEAKLL 141 Query: 160 EDLGINDPYEVD 171 +LG +PYEV+ Sbjct: 142 AELGYANPYEVE 153 >gi|83941255|ref|ZP_00953717.1| hypothetical protein EE36_03463 [Sulfitobacter sp. EE-36] gi|83847075|gb|EAP84950.1| hypothetical protein EE36_03463 [Sulfitobacter sp. EE-36] Length = 174 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L + E+ W + L TLC +++L + + E++++ D I TLN Sbjct: 4 LDVIEEDPRWA-GLDLDTLCPRAMRATLAHLS-----LDADTAEVTVLACDDAHIATLNA 57 Query: 73 EYRGIDKPTNVLSFPTAF--ASSDGCSSLM----------LGDIVLAYEIIEIEANVLGK 120 ++R PTNVLS+P A+ DG L LGDI ++Y+ EA G+ Sbjct: 58 DFRDKPTPTNVLSWPAEERGAARDGELPLPVTPGFDNMLELGDIAISYDTCHAEAEAAGR 117 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H+ HLI+HG LHLLGYDH D DA +ME LE IL LG++DPY D Sbjct: 118 PMADHVTHLIVHGLLHLLGYDHERDGDATLMERLEVEILGKLGLDDPYRDD 168 >gi|52841670|ref|YP_095469.1| metal dependent hydrolase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294525|ref|YP_126940.1| hypothetical protein lpl1601 [Legionella pneumophila str. Lens] gi|54297350|ref|YP_123719.1| hypothetical protein lpp1395 [Legionella pneumophila str. Paris] gi|148358971|ref|YP_001250178.1| metal dependent hydrolase [Legionella pneumophila str. Corby] gi|296107020|ref|YP_003618720.1| Predicted metal-dependent hydrolase [Legionella pneumophila 2300/99 Alcoy] gi|59799081|sp|Q5WW59|RRMF_LEGPL RecName: Full=Probable rRNA maturation factor gi|59799082|sp|Q5X5C5|RRMF_LEGPA RecName: Full=Probable rRNA maturation factor gi|59799085|sp|Q5ZVK0|RRMF_LEGPH RecName: Full=Probable rRNA maturation factor gi|166235104|sp|A5IBT2|RRMF_LEGPC RecName: Full=Probable rRNA maturation factor gi|52628781|gb|AAU27522.1| metal dependent hydrolase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751135|emb|CAH12546.1| hypothetical protein lpp1395 [Legionella pneumophila str. Paris] gi|53754357|emb|CAH15841.1| hypothetical protein lpl1601 [Legionella pneumophila str. Lens] gi|148280744|gb|ABQ54832.1| metal dependent hydrolase [Legionella pneumophila str. Corby] gi|295648921|gb|ADG24768.1| Predicted metal-dependent hydrolase [Legionella pneumophila 2300/99 Alcoy] Length = 158 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 76/132 (57%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 ++ L S + EL++ D + LN YR +KPTNVL+FP + ++ Sbjct: 22 ITKLASLALRDHKQDAELTVRLVDVEEMTYLNHTYRKKNKPTNVLAFPCSLPANIELECP 81 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGD+V+ E++ E+ K H ++IHG LHLLGYDH+ D++A +M+ LE +L Sbjct: 82 LLGDVVICPEVLLAESAQFNKSLHAHWSLILIHGVLHLLGYDHIKDEEASIMQMLEAKLL 141 Query: 160 EDLGINDPYEVD 171 +LG +PYEV+ Sbjct: 142 AELGYANPYEVE 153 >gi|313895824|ref|ZP_07829378.1| translation metalloprotein YbeY [Selenomonas sp. oral taxon 137 str. F0430] gi|312975249|gb|EFR40710.1| translation metalloprotein YbeY [Selenomonas sp. oral taxon 137 str. F0430] Length = 154 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I + + +E+ + E +AV + G E+S+ T+ I +N Sbjct: 2 MEITI--SAQPEELCIAPGDEAAVRRAVETV---GRLYGAEGAEVSVTLTNDAYIHEINR 56 Query: 73 EYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +YRG+D+PT+V+SF + D + +LGD+V++ E +A G + L Sbjct: 57 QYRGVDRPTDVISFALMESEEPEILDDPAGDVLGDLVISLERARAQAEEYGHSYLRELSF 116 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HG LHLLGYDH++D + ME +R ++E LGI Sbjct: 117 LTVHGMLHLLGYDHMEDAERAEMEEEQRHVMEALGI 152 >gi|237810909|ref|YP_002895360.1| putative conserved hypothetical protein [Burkholderia pseudomallei MSHR346] gi|237506403|gb|ACQ98721.1| putative conserved hypothetical protein [Burkholderia pseudomallei MSHR346] Length = 274 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 125 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 176 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 177 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 232 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 233 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 274 >gi|22125096|ref|NP_668519.1| putative metalloprotease [Yersinia pestis KIM 10] gi|45440925|ref|NP_992464.1| putative metalloprotease [Yersinia pestis biovar Microtus str. 91001] gi|108808472|ref|YP_652388.1| putative metalloprotease [Yersinia pestis Antiqua] gi|108811268|ref|YP_647035.1| putative metalloprotease [Yersinia pestis Nepal516] gi|145599897|ref|YP_001163973.1| putative metalloprotease [Yersinia pestis Pestoides F] gi|149365481|ref|ZP_01887516.1| hypothetical protein YPE_0646 [Yersinia pestis CA88-4125] gi|162421082|ref|YP_001606319.1| putative metalloprotease [Yersinia pestis Angola] gi|165925376|ref|ZP_02221208.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. F1991016] gi|165937587|ref|ZP_02226149.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. IP275] gi|166008624|ref|ZP_02229522.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. E1979001] gi|166212421|ref|ZP_02238456.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. B42003004] gi|167399628|ref|ZP_02305152.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422550|ref|ZP_02314303.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423805|ref|ZP_02315558.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467946|ref|ZP_02332650.1| hypothetical protein YpesF_08614 [Yersinia pestis FV-1] gi|218929699|ref|YP_002347574.1| putative metalloprotease [Yersinia pestis CO92] gi|229838166|ref|ZP_04458325.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895958|ref|ZP_04511128.1| conserved protein [Yersinia pestis Pestoides A] gi|229898723|ref|ZP_04513868.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901506|ref|ZP_04516628.1| conserved protein [Yersinia pestis Nepal516] gi|270489692|ref|ZP_06206766.1| metalloprotein, YbeY/ UPF0054family [Yersinia pestis KIM D27] gi|294504422|ref|YP_003568484.1| hypothetical protein YPZ3_2312 [Yersinia pestis Z176003] gi|26006931|sp|Q8ZDF0|RRMF_YERPE RecName: Full=Probable rRNA maturation factor gi|123245656|sp|Q1C529|RRMF_YERPA RecName: Full=Probable rRNA maturation factor gi|123246625|sp|Q1CKP5|RRMF_YERPN RecName: Full=Probable rRNA maturation factor gi|166228416|sp|A4TNY8|RRMF_YERPP RecName: Full=Probable rRNA maturation factor gi|226701655|sp|A9R6Y0|RRMF_YERPG RecName: Full=Probable rRNA maturation factor gi|21957951|gb|AAM84770.1|AE013722_9 hypothetical protein y1193 [Yersinia pestis KIM 10] gi|45435784|gb|AAS61341.1| Predicted metal-dependent hydrolase [Yersinia pestis biovar Microtus str. 91001] gi|108774916|gb|ABG17435.1| hypothetical protein YPN_1104 [Yersinia pestis Nepal516] gi|108780385|gb|ABG14443.1| hypothetical protein YPA_2479 [Yersinia pestis Antiqua] gi|115348310|emb|CAL21241.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145211593|gb|ABP41000.1| hypothetical protein YPDSF_2634 [Yersinia pestis Pestoides F] gi|149291894|gb|EDM41968.1| hypothetical protein YPE_0646 [Yersinia pestis CA88-4125] gi|162353897|gb|ABX87845.1| conserved hypothetical protein TIGR00043 [Yersinia pestis Angola] gi|165914337|gb|EDR32952.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. IP275] gi|165922983|gb|EDR40134.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. F1991016] gi|165993006|gb|EDR45307.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. E1979001] gi|166206352|gb|EDR50832.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. B42003004] gi|166958564|gb|EDR55585.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052132|gb|EDR63540.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057975|gb|EDR67721.1| conserved hypothetical protein TIGR00043 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681435|gb|EEO77529.1| conserved protein [Yersinia pestis Nepal516] gi|229688271|gb|EEO80342.1| conserved protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694532|gb|EEO84579.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700881|gb|EEO88910.1| conserved protein [Yersinia pestis Pestoides A] gi|262362588|gb|ACY59309.1| hypothetical protein YPD4_2402 [Yersinia pestis D106004] gi|262366408|gb|ACY62965.1| hypothetical protein YPD8_2290 [Yersinia pestis D182038] gi|270338196|gb|EFA48973.1| metalloprotein, YbeY/ UPF0054family [Yersinia pestis KIM D27] gi|294354881|gb|ADE65222.1| hypothetical protein YPZ3_2312 [Yersinia pestis Z176003] gi|320016177|gb|ADV99748.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 157 Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ E + E V + + + E+++ D Sbjct: 1 MSQVILDLQIACADSQGLPTEGDFQRWLEAVLP------------LFQPVSEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DK TNVLSFP F + +LGD+++ +++E EA K Sbjct: 49 AESHDLNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVVEKEAIEQEKALLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH+DD++A ME +E I+ LG DPY Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDEEAEEMELIETEIMHGLGYPDPY 150 >gi|238022353|ref|ZP_04602779.1| hypothetical protein GCWU000324_02260 [Kingella oralis ATCC 51147] gi|237866967|gb|EEP68009.1| hypothetical protein GCWU000324_02260 [Kingella oralis ATCC 51147] Length = 167 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 6/140 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + + Y + E+SL+ D N +YR D TNVLSF Sbjct: 32 SERQFYQWIWHALKHEY----HRAEISLLLLDEADARAYNRDYRQKDYATNVLSFALNEG 87 Query: 92 S--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + GD+++ +++ EA GK +H HL++HG LHL+GYDH++D +A Sbjct: 88 EMMLPAQDDTLRGDLIICPQVVRREATEQGKLLAHHYAHLVLHGTLHLMGYDHINDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYE 169 ME LE +L LGI +PYE Sbjct: 148 EMEALETRLLAQLGIANPYE 167 >gi|88705748|ref|ZP_01103458.1| Protein of unknown function, UPF0054 [Congregibacter litoralis KT71] gi|88700261|gb|EAQ97370.1| Protein of unknown function, UPF0054 [Congregibacter litoralis KT71] Length = 163 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E ++ + +A ++ G E +L D ++ LN +YR + PTNVL Sbjct: 9 ETVEKSPDDQTLLRAAETALTVGSPAAHGHWEAALRIVDEAEMQQLNAQYRARNTPTNVL 68 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP + + +LGDIV+ +++ EA GK H H+++HG LHLLG+DH Sbjct: 69 SFPADLPAD--VTLNLLGDIVICAPVVKKEATNQGKPLAAHWDHMLVHGVLHLLGFDHES 126 Query: 145 DKDACVMEGLERSILEDLGINDPYEVD 171 D +A ME LE L LG PY D Sbjct: 127 DAEATHMESLETQALATLGWPCPYNAD 153 >gi|167718180|ref|ZP_02401416.1| hypothetical protein BpseD_04113 [Burkholderia pseudomallei DM98] gi|167901393|ref|ZP_02488598.1| hypothetical protein BpseN_03886 [Burkholderia pseudomallei NCTC 13177] Length = 273 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 124 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 175 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 176 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 231 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 232 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 273 >gi|228993242|ref|YP_001057758.2| unkown domain/putative metalloprotease fusion protein [Burkholderia pseudomallei 668] Length = 273 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 124 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 175 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 176 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 231 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 232 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 273 >gi|237809458|ref|YP_002893898.1| hypothetical protein Tola_2719 [Tolumonas auensis DSM 9187] gi|259646893|sp|C4LBN8|RRMF_TOLAT RecName: Full=Probable rRNA maturation factor gi|237501719|gb|ACQ94312.1| protein of unknown function UPF0054 [Tolumonas auensis DSM 9187] Length = 155 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 87/161 (54%), Gaps = 12/161 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQIA D L + E F + + + + E+++ D L Sbjct: 5 LDLQIAC-----ADSTGLPS--ETQFQQWLDTAV----LPFQQEAEVTIRLVDEAESNEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP + +LGD+++ +++E EA K E+H H++ Sbjct: 54 NLTYRGKDKPTNVLSFPFE-CPPEVEDFPLLGDLIICRQVVEKEALEQQKTLESHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH++D++A ME LE+ ++ LG DPY+ D Sbjct: 113 IHGSLHLLGYDHIEDEEAEEMEALEKEFMQTLGFPDPYKDD 153 >gi|3639064|gb|AAC36473.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 140 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 76/140 (54%), Gaps = 6/140 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + +I + + E+++ D L YRG DKPTNVLSFP F Sbjct: 5 DEAQFQTWLDGVIPQ----FQEEAEVTIRLVDEAETPDLILTYRGKDKPTNVLSFP--FE 58 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + G +LGD++++ +++E EA E H H+++HG LHLLGYDH+DD +A M Sbjct: 59 APAGIEMPLLGDLIISRQVVEQEAQEQTNPLEAHWAHMVVHGSLHLLGYDHIDDDEAEEM 118 Query: 152 EGLERSILEDLGINDPYEVD 171 E LE I+ +G DPY + Sbjct: 119 ESLETEIMLAMGYEDPYIAE 138 >gi|126219079|gb|ABN82585.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 668] Length = 274 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 125 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 176 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 177 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 232 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 233 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 274 >gi|323490063|ref|ZP_08095284.1| putative metalloprotease [Planococcus donghaensis MPA1U2] gi|323396359|gb|EGA89184.1| putative metalloprotease [Planococcus donghaensis MPA1U2] Length = 160 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 79/157 (50%), Gaps = 11/157 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 IA++ + DE E+ F K + +K V ++ E+S+ F + I +N EY Sbjct: 2 IAID---FMDETESLDQKELDFVKKILEHAAKQEKVTDS--EVSVTFVTNEMIRDINREY 56 Query: 75 RGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 RG D+PT+V+SF MLGDI+++ + + +A G FE L Sbjct: 57 RGKDQPTDVISFAMEELGEGETAIIGSQEPRMLGDIIISLDRTKEQAEDFGHSFERELGF 116 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L IHGFLHLLGYDH+ ++D M + IL LGI Sbjct: 117 LAIHGFLHLLGYDHMTEEDEKKMFSRQEEILVSLGIT 153 >gi|145572775|sp|Q0BC19|RRMF_BURCM RecName: Full=Probable rRNA maturation factor Length = 175 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L+ ++V+ +GDE+ K ++ I F + +L++ F T Sbjct: 25 ELEFDLSVQ---YGDEVTGDVRKACPKRKLIAEWIEPALF---SSAQLTVRFVGEEEGRT 78 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D PTNVL+F ++GD+VL ++E EA GK H HL Sbjct: 79 LNDGYRHKDYPTNVLTFAY----DPLPDGTVIGDLVLCCPVVEKEAQEQGKPLAAHYAHL 134 Query: 130 IIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 ++HG LH GYDH ++DA ME LE +IL LG +PY+ Sbjct: 135 LVHGALHAQGYDHETSEEDAAEMEALEVAILAKLGFPNPYQ 175 >gi|145572766|sp|Q1BTS1|RRMF_BURCA RecName: Full=Probable rRNA maturation factor gi|145572773|sp|A0KAB8|RRMF_BURCH RecName: Full=Probable rRNA maturation factor Length = 172 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 11/160 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+L ++V+ +GDEI + K ++ I F +L++ F + TL Sbjct: 23 LELDLSVQ---YGDEITSDVRKTLPKRKLIAEWIEPALFA---SAQLTVRFVGENEGRTL 76 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR D PTNVL+F A ++GD+VL ++E EA+ GK H HL+ Sbjct: 77 NAGYRHKDYPTNVLTFAYDAAP----DGTVIGDLVLCCPVVEKEAHDQGKPLAAHYAHLL 132 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +HG LH GYDH D+DA ME LE IL LG +PY+ Sbjct: 133 VHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYQ 172 >gi|238752612|ref|ZP_04614085.1| metalloprotease [Yersinia rohdei ATCC 43380] gi|238709203|gb|EEQ01448.1| metalloprotease [Yersinia rohdei ATCC 43380] Length = 117 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +++ D LN YRG DK TNVLSFP F + +LGD+++ +++E EA Sbjct: 1 MTIRIVDEAESHELNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQEAI 58 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 59 EQEKALLAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 110 >gi|332285329|ref|YP_004417240.1| hypothetical protein PT7_2076 [Pusillimonas sp. T7-7] gi|330429282|gb|AEC20616.1| hypothetical protein PT7_2076 [Pusillimonas sp. T7-7] Length = 164 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 7/161 (4%) Query: 12 DLQIAVENALWGDEIH---LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 +L + V+ A+ E+ LR + + + G + L+L D+ Sbjct: 4 ELALTVQYAIPAAELPRWRLRRWVQHALSGVLKAEAEAGAPGRFRAAALALRLVDADEGR 63 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN E+R D TNVL+F + GDIVL ++ EA K +H H Sbjct: 64 RLNREFRHKDYATNVLTFEYGIDP----EGVASGDIVLCLPVLYREAAEQKKSILDHAAH 119 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L +HG LH LGYDH++ ++A ME LE +IL +G DPY+ Sbjct: 120 LTVHGVLHALGYDHIEPEEATDMEELETAILAKMGFADPYQ 160 >gi|167822819|ref|ZP_02454290.1| hypothetical protein Bpseu9_04036 [Burkholderia pseudomallei 9] Length = 273 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F ++ F + Sbjct: 124 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIFSDTQF---TVRFVGADEGR 175 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 176 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 231 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 232 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 273 >gi|82703810|ref|YP_413376.1| hypothetical protein Nmul_A2697 [Nitrosospira multiformis ATCC 25196] gi|123543797|sp|Q2Y5I7|RRMF_NITMU RecName: Full=Probable rRNA maturation factor gi|82411875|gb|ABB75984.1| Protein of unknown function UPF0054 [Nitrosospira multiformis ATCC 25196] Length = 189 Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 49/146 (33%), Positives = 67/146 (45%), Gaps = 15/146 (10%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----- 86 + K V ++ + E++L D LN ++R D TNVL+F Sbjct: 40 SRALLRKWVKAALA-------HDAEIALRIVDEEEGHRLNRDFRNKDYATNVLTFVYRDG 92 Query: 87 ---PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 P + + + GDIVL ++E EA K+ H HL +HG LHL GYDH Sbjct: 93 QIHPDSPLGEKRGAYPLTGDIVLCAPVVENEAGQQQKDLMAHYAHLTVHGVLHLQGYDHQ 152 Query: 144 DDKDACVMEGLERSILEDLGINDPYE 169 +D+DA ME E IL LG DPY Sbjct: 153 EDEDAKNMEETETRILAWLGYEDPYA 178 >gi|227500708|ref|ZP_03930757.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] gi|227217166|gb|EEI82515.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] Length = 443 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + K + ++ E+ E+S+ F D I+ LN E+R ID+ T+VLSFP Sbjct: 16 DADLEKTIREVLKTEGL--EDNYEVSITFVDREEIQRLNKEFRNIDRQTDVLSFPLDDDM 73 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + +MLGDIV+ ++ + +A G +++L H LHLLGYDH+++ D M Sbjct: 74 NLPGEDIMLGDIVICMDVAKDQAREFGHSLRREIMYLTCHSTLHLLGYDHMEEDDKRKMR 133 Query: 153 GLERSILEDL 162 E+ I+ +L Sbjct: 134 AREKEIMRNL 143 >gi|226196767|ref|ZP_03792347.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pakistan 9] gi|225931298|gb|EEH27305.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pakistan 9] Length = 274 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F ++ F + Sbjct: 125 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIFSDTQF---TVRFVGADEGR 176 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 177 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 232 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 233 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 274 >gi|224476678|ref|YP_002634284.1| hypothetical protein Sca_1192 [Staphylococcus carnosus subsp. carnosus TM300] gi|254799973|sp|B9DNL6|RRMF_STACT RecName: Full=Probable rRNA maturation factor gi|222421285|emb|CAL28099.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 153 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 5/135 (3%) Query: 36 FAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + + + NL+ +K E+ ELS+ F + I+ +N +YR DK T+V+SF Sbjct: 17 WYQQIDNLLTFAKKEEKIEDDAELSVTFVNKQEIQEINRDYRNKDKVTDVISFALEEDEP 76 Query: 94 D---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D +LGDI++ ++ + +A G FE L L +HGFLHLLGYDH+++ D Sbjct: 77 DIEGLDMPRVLGDIIICADVAKEQAEEYGHSFERELGFLALHGFLHLLGYDHMNEADEKE 136 Query: 151 MEGLERSILEDLGIN 165 M G ++ IL++ G+ Sbjct: 137 MFGRQKLILDNYGLT 151 >gi|110636245|ref|YP_676453.1| hypothetical protein Meso_3921 [Mesorhizobium sp. BNC1] gi|123161515|sp|Q11BD7|RRMF_MESSB RecName: Full=Probable rRNA maturation factor gi|110287229|gb|ABG65288.1| protein of unknown function UPF0054 [Chelativorans sp. BNC1] Length = 163 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 86/169 (50%), Gaps = 6/169 (3%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M + + P + AV W E LR L E + + LS++ Sbjct: 1 MVEGEASSPAFTIDYAVATGDWPAEDVLRGLVER------AVTAAAARTDGPLQASLSVL 54 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 FTD + LN +RG DKPTNVLSFP + + GDI L YE + EA GK Sbjct: 55 FTDDAEMRALNARFRGKDKPTNVLSFPAPDSMVPPGTPRHFGDIALGYETVSREAKEEGK 114 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 FE+HL HL++HGFLHL G+DH + +A ME LER IL+ L I DPY Sbjct: 115 SFEHHLTHLVVHGFLHLAGHDHETEVEAEEMEQLEREILQSLAIGDPYA 163 >gi|325276220|ref|ZP_08142019.1| metal-binding heat shock protein [Pseudomonas sp. TJI-51] gi|324098649|gb|EGB96696.1| metal-binding heat shock protein [Pseudomonas sp. TJI-51] Length = 157 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LD+Q A + A D+ R CE+ + ++ E+++ D Sbjct: 3 ELDIQRATDAAAPSDD-DFRRWCELALRQRSAD------------SEMTIRLVDEAEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVLSFP A D +LGD+V+ ++E EA GK H HL Sbjct: 50 LNHTYRHKDYATNVLSFP-ADVPDDLLDIPLLGDLVICVAVVEREAAEQGKALNAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A MEGLER +L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIDDEEAEEMEGLERELLAELGHPDPYADD 150 >gi|255659361|ref|ZP_05404770.1| putative metalloprotease [Mitsuokella multacida DSM 20544] gi|260848445|gb|EEX68452.1| putative metalloprotease [Mitsuokella multacida DSM 20544] Length = 154 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 4/129 (3%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GC 96 + G E+S+ T++ I LN +YRGID+PT+VLSF + G Sbjct: 24 AAAQKVGELYGVENGEVSITLTNNAYIHELNRQYRGIDRPTDVLSFALNESEEPEVTGGA 83 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +LGD+V++ E E +A G + + L +HG LHLLGYDH+++K+ ME +R Sbjct: 84 DINVLGDLVISVERAEEQAKDFGHSVKREMAFLTVHGMLHLLGYDHMEEKERLEMEQEQR 143 Query: 157 SILEDLGIN 165 ++E LGI Sbjct: 144 FVMEKLGIP 152 >gi|94309396|ref|YP_582606.1| unkown domain/putative metalloprotease fusion protein [Cupriavidus metallidurans CH34] gi|93353248|gb|ABF07337.1| putative metal-dependent hydrolase [Cupriavidus metallidurans CH34] Length = 245 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 7/133 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K + + + L++ F D TLN YRG D TNVL+F A D Sbjct: 116 RKQIEKWVKSALYADAA---LTVRFVDETEGRTLNRSYRGKDYATNVLTFAYAENDDDPV 172 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + GDIVL ++E EA K E H HLI+HG LH GY+H DD +A ME +E Sbjct: 173 A----GDIVLCCPVVESEAKAQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIET 228 Query: 157 SILEDLGINDPYE 169 L+ LG DPY+ Sbjct: 229 ETLQALGFEDPYK 241 >gi|330828615|ref|YP_004391567.1| metalloprotease [Aeromonas veronii B565] gi|328803751|gb|AEB48950.1| metalloprotease [Aeromonas veronii B565] Length = 154 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 15/162 (9%) Query: 11 LDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E L+ + + E+++ D Sbjct: 5 LDLQLASASTDGLPTEAQLQGWLDGTI------------LGFQQEAEVTVRIVDEAESNE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F + G +LGD+V+ +++E EA GK H H+ Sbjct: 53 LNLTYRGKDKPTNVLSFP--FEAPPGLELPLLGDLVICRQVVEREAEEQGKPLMAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D++A ME LER I+++LG DPY D Sbjct: 111 VVHGSLHLLGYDHIEDEEAEEMEALERDIMQELGFADPYLND 152 >gi|15613926|ref|NP_242229.1| hypothetical protein BH1363 [Bacillus halodurans C-125] gi|20140844|sp|Q9KD56|RRMF_BACHD RecName: Full=Probable rRNA maturation factor gi|10173979|dbj|BAB05082.1| BH1363 [Bacillus halodurans C-125] Length = 159 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++QI D T + + + + ++ + E ELSL F I+ L Sbjct: 1 MNIQI-----DMIDHTDTLTEKQETLIRELLHEAARYEKLAEGTYELSLSFVSDEEIQEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFA-------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 N +YRG D+PT+V+SF + + +LGDI+++ + +A G FE Sbjct: 56 NRDYRGKDQPTDVISFALNEVGEGEQPVEPEAGTPNLLGDIIVSIPRCQEQAEAYGHSFE 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L LI+HGFLHLLGYDH+ + + M + IL G+ Sbjct: 116 RELAFLIVHGFLHLLGYDHMSEDEEKKMFMRQEDILTAYGLT 157 >gi|209694557|ref|YP_002262485.1| putative metalloprotease [Aliivibrio salmonicida LFI1238] gi|226703999|sp|B6EIN6|RRMF_ALISL RecName: Full=Probable rRNA maturation factor gi|208008508|emb|CAQ78679.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 153 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA EN E L + K + ++ + EL++ D Sbjct: 4 ELDLQIACEN-----EKDLPS------EKDFMSWLNAVLPQFQPQAELTIRIVDEKESHE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG+DKPTNVLSFP F + +LGD+++ +++E EA K H H+ Sbjct: 53 LNHQYRGMDKPTNVLSFP--FEAPPEVEIDLLGDLIICRQVVEKEAVEQNKPLLAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D++A ME LE +++++G DPY + Sbjct: 111 VVHGSLHLLGYDHIEDEEAEEMESLETELMQEMGFEDPYLAE 152 >gi|153873752|ref|ZP_02002229.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152069781|gb|EDN67770.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 181 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + VEL++ D + LN ++R PTN+LSFP F S +LGD+V+ ++ Sbjct: 62 SQVELTIRIVDDEEAKQLNEKWRQRPNPTNILSFP--FESPLDLEIPLLGDLVICASVVA 119 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 EA K + H HL+IHG LHLLGYDH++ ME E IL DLG ++PY++ Sbjct: 120 REATEQYKSLDAHWAHLVIHGTLHLLGYDHIEIAQEQFMESTEICILYDLGYSNPYQL 177 >gi|46577519|sp|Q8Y208|RRMF_RALSO RecName: Full=Probable rRNA maturation factor Length = 187 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 76/161 (47%), Gaps = 10/161 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + V++ GD + + K + I+ F +L++ F D T Sbjct: 36 MLTLDLTVQH---GDALKAAARKALPKQKDIEAWIAPALFAD---AQLNVRFVDEEEGRT 89 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D TNVL+F A D ++ DIVL ++E EA GK H HL Sbjct: 90 LNHTYRGKDYATNVLTFSYAETEDDPVAA----DIVLCCPVVEQEAKDQGKPLRAHYAHL 145 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 I+HG LH GYDH D A MEG+E +L LG DPY Sbjct: 146 IVHGALHAQGYDHEDPAQAEEMEGIETEVLAGLGFPDPYAD 186 >gi|89100467|ref|ZP_01173329.1| hypothetical protein B14911_05536 [Bacillus sp. NRRL B-14911] gi|89084810|gb|EAR63949.1| hypothetical protein B14911_05536 [Bacillus sp. NRRL B-14911] Length = 156 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 7/153 (4%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + DE + + + + N ++ V E ELS+ F + RI+ +N EYR D Sbjct: 4 NIDFLDETNEVKSSHIEQVEKLLNFAAEKENV-EAGSELSVTFVTNDRIQEINREYRDKD 62 Query: 79 KPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 KPT+V+SF +LGDI+++ + E +A G FE L L +H Sbjct: 63 KPTDVISFAMEELGEGETEIAGEGIPRVLGDIIISIQRTEEQAGEYGHSFERELGFLAVH 122 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLHLLGYDH D++ M G ++ IL++ G+ Sbjct: 123 GFLHLLGYDHETDEEEREMFGRQKDILDEYGLT 155 >gi|26991468|ref|NP_746893.1| putative metalloprotease [Pseudomonas putida KT2440] gi|37999614|sp|Q88DN6|RRMF_PSEPK RecName: Full=Probable rRNA maturation factor gi|24986545|gb|AAN70357.1|AE016677_8 conserved hypothetical protein TIGR00043 [Pseudomonas putida KT2440] Length = 157 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LD+Q A + A D LR CE+ + ++ E+++ D Sbjct: 3 ELDIQRATDAATPEDAA-LRRWCELALRQRSAD------------SEMTIRLVDEAEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVLSFP A D +LGD+V+ ++E EA GK E H HL Sbjct: 50 LNHTYRHKDYATNVLSFP-ADVPDDLLDIPLLGDLVICVAVVEREAAEQGKSLEAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH++D++A ME LER +L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIEDEEAEEMESLERELLAELGHPDPYADD 150 >gi|90022942|ref|YP_528769.1| lipoate-protein ligase B [Saccharophagus degradans 2-40] gi|123090090|sp|Q21FH2|RRMF_SACD2 RecName: Full=Probable rRNA maturation factor gi|89952542|gb|ABD82557.1| protein of unknown function UPF0054 [Saccharophagus degradans 2-40] Length = 149 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 81/156 (51%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L I ++ A D L + K + + N ELS+ D + LN Sbjct: 2 LTIDIQQASTADASQLPS------DKQFEIWVEAALQQRMNEAELSIRIVDEDESQALNL 55 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +YRG DK TNVLSFP DG +LGD+V+ +++ EA GK H H+++H Sbjct: 56 QYRGKDKSTNVLSFPCEL--PDGVELPLLGDLVICAQVVAKEALEQGKLLHAHWAHMVVH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHLLGYDH++D +A ME +E +L +LG +PY Sbjct: 114 GTLHLLGYDHIEDGEAEEMEAIEIQVLLELGYPNPY 149 >gi|296447883|ref|ZP_06889794.1| protein of unknown function UPF0054 [Methylosinus trichosporium OB3b] gi|296254624|gb|EFH01740.1| protein of unknown function UPF0054 [Methylosinus trichosporium OB3b] Length = 168 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 87/158 (55%), Gaps = 7/158 (4%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I V W + L L + V+ ++ ELS+ FTD I LN Sbjct: 4 SIDIIVTAPCWEQQTGLDELTQSTVRGCVAVTAAR----LAQDCELSVNFTDDATIRELN 59 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 ++RGIDKPTNVLSF L LGDIV+A+E + EA+ GK FE HL HLII Sbjct: 60 AQWRGIDKPTNVLSF---ETPGPLARRLSLGDIVIAHETVAREADEQGKSFEAHLTHLII 116 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HGFLHL+GYDH ++A ME LER I LG+ DPYE Sbjct: 117 HGFLHLIGYDHQAAREAEEMEALERRIAATLGLADPYE 154 >gi|138896065|ref|YP_001126518.1| putative metalloprotease [Geobacillus thermodenitrificans NG80-2] gi|196248958|ref|ZP_03147658.1| protein of unknown function UPF0054 [Geobacillus sp. G11MC16] gi|166228371|sp|A4IR19|RRMF_GEOTN RecName: Full=Probable rRNA maturation factor gi|134267578|gb|ABO67773.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196211834|gb|EDY06593.1| protein of unknown function UPF0054 [Geobacillus sp. G11MC16] Length = 156 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 14/162 (8%) Query: 11 LDLQI-AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +QI ++ + TL +++ A + +G E+S+ F D+ RI Sbjct: 1 MTIQIDFIDETNEVTAEQIETLEQLIREAAAVENVPEG-------AEVSVSFVDNERIRV 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFE 123 +N +YRG D PT+VLSF +LGDI+++ + +A G F Sbjct: 54 MNRDYRGKDAPTDVLSFALEEEGEGEIDIIGADVPPVLGDIIISIPKAKEQAAEYGHSFM 113 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HGFLHLLGYDH +++ VM + IL G+ Sbjct: 114 RELGFLAVHGFLHLLGYDHETEEEERVMFAKQEEILTRFGLT 155 >gi|167814343|ref|ZP_02446023.1| hypothetical protein Bpse9_04323 [Burkholderia pseudomallei 91] gi|167844394|ref|ZP_02469902.1| hypothetical protein BpseB_03824 [Burkholderia pseudomallei B7210] gi|167892907|ref|ZP_02480309.1| hypothetical protein Bpse7_04011 [Burkholderia pseudomallei 7894] gi|167909622|ref|ZP_02496713.1| hypothetical protein Bpse112_03959 [Burkholderia pseudomallei 112] gi|167917637|ref|ZP_02504728.1| hypothetical protein BpseBC_03726 [Burkholderia pseudomallei BCC215] gi|229269498|ref|YP_107301.2| unkown domain/putative metalloprotease fusion protein [Burkholderia pseudomallei K96243] gi|229335614|ref|YP_001065003.2| putative metalloprotease [Burkholderia pseudomallei 1106a] gi|254187673|ref|ZP_04894185.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pasteur 52237] gi|254196964|ref|ZP_04903388.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei S13] gi|254296215|ref|ZP_04963672.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 406e] gi|157806091|gb|EDO83261.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 406e] gi|157935353|gb|EDO91023.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei Pasteur 52237] gi|169653707|gb|EDS86400.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei S13] Length = 270 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 121 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 172 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 173 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 228 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 229 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 270 >gi|312898796|ref|ZP_07758184.1| conserved hypothetical protein TIGR00043 [Megasphaera micronuciformis F0359] gi|310619958|gb|EFQ03530.1| conserved hypothetical protein TIGR00043 [Megasphaera micronuciformis F0359] Length = 157 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 3/116 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAY 108 + ELS+V D+ I LN YR ID+PT+VLSF DG + +LGDIV++ Sbjct: 35 DEDAELSVVLCDNAYIHELNKTYRNIDRPTDVLSFALNEGEEEGYDGPDTKLLGDIVISL 94 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + ++ G FE L +L +HG LH+LGYDH+ D+D M E +L LG Sbjct: 95 DKTREQSEEYGHSFERELAYLTVHGMLHILGYDHMTDEDKAEMRKEEEFVLHRLGF 150 >gi|229086872|ref|ZP_04219032.1| metalloprotease [Bacillus cereus Rock3-44] gi|228696447|gb|EEL49272.1| metalloprotease [Bacillus cereus Rock3-44] Length = 136 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI+ +N +YR D+PT+V+SF MLGD++ Sbjct: 16 EDGTELSVTFVDNERIQEINRDYRDKDQPTDVISFAMEDMGEGEMEIVGVEMPRMLGDLI 75 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ D+D M G ++ ILE G+ Sbjct: 76 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTDEDEKEMFGKQKEILEAFGL 134 >gi|228999095|ref|ZP_04158677.1| metalloprotease [Bacillus mycoides Rock3-17] gi|229006643|ref|ZP_04164277.1| metalloprotease [Bacillus mycoides Rock1-4] gi|228754504|gb|EEM03915.1| metalloprotease [Bacillus mycoides Rock1-4] gi|228760712|gb|EEM09676.1| metalloprotease [Bacillus mycoides Rock3-17] Length = 143 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI+ +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGTELSVTFVDNERIQEINRDYRDKDQPTDVISFAMEDMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ D+D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTDEDEKEMFGKQKEILEAFGL 141 >gi|119386401|ref|YP_917456.1| hypothetical protein Pden_3693 [Paracoccus denitrificans PD1222] gi|145558815|sp|A1B8B6|RRMF_PARDP RecName: Full=Probable rRNA maturation factor gi|119376996|gb|ABL71760.1| protein of unknown function UPF0054 [Paracoccus denitrificans PD1222] Length = 174 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 86/163 (52%), Gaps = 15/163 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E+ W D L + E A+AV + F ++ ++ D RI LN Sbjct: 15 VDIVLEDDRWED-ADLPAMAERA-ARAVGEWLGLDAF------QVVVMGCDDARIAALNA 66 Query: 73 EYRGIDKPTNVLSFPTAFAS-------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 E+RG KPTNVLS+P + + LGDI ++Y+ EA GK F +H Sbjct: 67 EFRGKPKPTNVLSWPAVEFEAREPGAHPEPPGAEELGDIAISYDTCLREAEAQGKPFADH 126 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL++H LHL GYDH+DD+DA ME ERSIL LGI DPY Sbjct: 127 ATHLLVHAMLHLAGYDHIDDEDAETMEDAERSILGKLGIPDPY 169 >gi|217420118|ref|ZP_03451624.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 576] gi|242316823|ref|ZP_04815839.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1106b] gi|52208729|emb|CAH34665.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|126226010|gb|ABN89550.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1106a] gi|217397422|gb|EEC37438.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 576] gi|242140062|gb|EES26464.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1106b] Length = 271 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 122 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 173 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 174 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 229 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 230 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 271 >gi|302333246|gb|ADL23439.1| putative metalloprotease [Staphylococcus aureus subsp. aureus JKD6159] Length = 155 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L+ +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIKDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 D +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPDIDFSGFDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGLT 153 >gi|134279773|ref|ZP_01766485.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 305] gi|254181743|ref|ZP_04888340.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1655] gi|134248973|gb|EBA49055.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 305] gi|184212281|gb|EDU09324.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1655] Length = 271 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 122 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 173 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 174 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 229 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 230 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 271 >gi|332993748|gb|AEF03803.1| hypothetical protein ambt_11410 [Alteromonas sp. SN2] Length = 155 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 + A DE + + + +A +N + E E+++ FTD +TLN EYRG Sbjct: 8 QQAYEADEGMAKAIPSLEQIEAWANAVLVAENTGEQ--EITVRFTDDEESQTLNHEYRGK 65 Query: 78 DKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 DKPTNVLSFP F G +LGD+V+ +I EA K NH H+++HG LHL Sbjct: 66 DKPTNVLSFP--FEVPPGIEMNLLGDLVICVPVIMREAEEQDKTPTNHYAHMVVHGILHL 123 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LGYDH+DD DA +ME E IL L I +PY+ Sbjct: 124 LGYDHIDDADADIMEAKEIRILASLNIGNPYQ 155 >gi|304320424|ref|YP_003854067.1| hypothetical protein PB2503_04252 [Parvularcula bermudensis HTCC2503] gi|303299326|gb|ADM08925.1| hypothetical protein PB2503_04252 [Parvularcula bermudensis HTCC2503] Length = 158 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 55/115 (47%), Positives = 70/115 (60%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++L TD ++ LN +RG D PTNVLSFP S+ L LGDI +AY + EA Sbjct: 40 IALRLTDDTELQALNKSFRGKDTPTNVLSFPADPFSTPPGEDLFLGDIAIAYGVCAREAE 99 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 + HL HLI+HGFLHLLGYDH D DA VME LE ++++ LG +PY D Sbjct: 100 ARAFPLDRHLAHLILHGFLHLLGYDHQSDADAAVMEDLEATLMDRLGYGNPYAGD 154 >gi|169829170|ref|YP_001699328.1| hypothetical protein Bsph_3714 [Lysinibacillus sphaericus C3-41] gi|238688186|sp|B1HTJ4|RRMF_LYSSC RecName: Full=Probable rRNA maturation factor gi|168993658|gb|ACA41198.1| UPF0054 protein [Lysinibacillus sphaericus C3-41] Length = 157 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIV 105 E E+S+ F + I+ +N EYRG D+PT+V+SF +LGDI+ Sbjct: 36 EPETEVSVTFVTNDTIQDINREYRGKDQPTDVISFALEELGEGEMAVTFEGMPRVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + + +A FE L L +HGFLHLLGYDH++ ++ VM + IL+ G+ Sbjct: 96 ISTDRAKEQAEEYNHSFERELGFLAVHGFLHLLGYDHMEPEEEKVMFTKQDEILQTFGL 154 >gi|257065846|ref|YP_003152102.1| hypothetical protein Apre_0330 [Anaerococcus prevotii DSM 20548] gi|256797726|gb|ACV28381.1| protein of unknown function UPF0054 [Anaerococcus prevotii DSM 20548] Length = 446 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + + V ++ ++ E+S+ F D I LN E+R +D+PT+VLSFP Sbjct: 16 DADLERTVKEVLKTEGLGED--YEVSITFVDREEIHRLNREFRDVDRPTDVLSFPLDDTI 73 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + MLGDIV+ ++ + +A G +++L H LHLLGYDH+++ + M Sbjct: 74 DLPDADKMLGDIVICLDVAKDQAMEFGHSLRREIMYLTCHSTLHLLGYDHMEEDEKREMR 133 Query: 153 GLERSILEDL 162 E+ ++ +L Sbjct: 134 RREKEVMRNL 143 >gi|148549866|ref|YP_001269968.1| putative metalloprotease [Pseudomonas putida F1] gi|167012965|sp|A5W9H4|RRMF_PSEP1 RecName: Full=Probable rRNA maturation factor gi|148513924|gb|ABQ80784.1| protein of unknown function UPF0054 [Pseudomonas putida F1] gi|313500768|gb|ADR62134.1| Putative metalloprotease [Pseudomonas putida BIRD-1] Length = 157 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LD+Q A + A D LR CE+ + ++ E+++ D Sbjct: 3 ELDIQRATDAATPEDAA-LRRWCELALRQRSAD------------SEMTIRLVDEAEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVLSFP A + +LGD+V+ ++E EA GK E H HL Sbjct: 50 LNHTYRHKDYATNVLSFP-ADVPDELLDIPLLGDLVICVAVVEREAAEQGKSLEAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH++D++A ME LER +L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIEDEEAEEMESLERELLAELGHPDPYADD 150 >gi|53724679|ref|YP_102057.1| unkown domain/metalloprotease fusion protein [Burkholderia mallei ATCC 23344] gi|228969302|ref|YP_332300.2| unkown domain/putative metalloprotease fusion protein [Burkholderia pseudomallei 1710b] gi|229008326|ref|YP_994019.2| unkown domain/putative metalloprotease fusion protein [Burkholderia mallei SAVP1] gi|229027669|ref|YP_001081961.2| unkown domain/putative metalloprotease fusion protein [Burkholderia mallei NCTC 10247] gi|229780993|ref|YP_001028317.2| unkown domain/putative metalloprotease fusion protein [Burkholderia mallei NCTC 10229] gi|254208717|ref|ZP_04915065.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei JHU] gi|52428102|gb|AAU48695.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei ATCC 23344] gi|147750593|gb|EDK57662.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei JHU] Length = 270 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F ++ F + Sbjct: 121 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIFSDTQF---TVRFVGADEGR 172 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 173 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 228 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 229 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 270 >gi|315497216|ref|YP_004086020.1| hypothetical protein Astex_0168 [Asticcacaulis excentricus CB 48] gi|315415228|gb|ADU11869.1| protein of unknown function UPF0054 [Asticcacaulis excentricus CB 48] Length = 156 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I VE+ W + + V A+ Y + ++L ++ TD ++ LN Sbjct: 8 IDIEVEHDNWTEALP---EVSAVVTGAIEATF--AYLGAKEQLDLVVLLTDDAEMKALNK 62 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 E+R + PTNVLSFP LGDI +E EA K + H+ HL +H Sbjct: 63 EFRQKNAPTNVLSFPAP-----DMMHPHLGDIAFGFETCVREAKEQKKTLKAHVAHLSVH 117 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHLLGYDH++D +A ME LER IL LGI DPY Sbjct: 118 GALHLLGYDHINDPEAEEMEDLERKILHGLGIADPY 153 >gi|294676667|ref|YP_003577282.1| hypothetical protein RCAP_rcc01117 [Rhodobacter capsulatus SB 1003] gi|294475487|gb|ADE84875.1| protein of unknown function UPF0054 [Rhodobacter capsulatus SB 1003] Length = 170 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 13/160 (8%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +E + + ++ V+ ++ + E+SL+ D RI LN E+RG PTNV Sbjct: 11 EEAAWQGIDLAGLSERVARIVLTDQELDPEAWEISLIGCDDARIADLNAEFRGKPTPTNV 70 Query: 84 LSFPTAFASSDGCSSLM-------------LGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 LS+P +++ LGDI ++Y+ EA GK +H+ HL+ Sbjct: 71 LSWPAQDLAAEDDGEEPYFPEPFVPGERDSLGDIAISYQTCLREAEAAGKSVHDHVTHLV 130 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 IHG LHLLGYDH+ D DA +ME +E IL LGI +PYE+ Sbjct: 131 IHGVLHLLGYDHIRDADAQLMESIEVRILAALGIANPYEI 170 >gi|228993045|ref|ZP_04152968.1| metalloprotease [Bacillus pseudomycoides DSM 12442] gi|228766693|gb|EEM15333.1| metalloprotease [Bacillus pseudomycoides DSM 12442] Length = 143 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI+ +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGTELSVTFVDNERIQEINRDYRDKDQPTDVISFAMEDMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ D+D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTDEDEQEMFGKQKEILEAFGL 141 >gi|238562536|ref|ZP_00440243.2| putative conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|251767812|ref|ZP_02268483.2| conserved hypothetical protein TIGR00043 [Burkholderia mallei PRL-20] gi|254177000|ref|ZP_04883657.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei ATCC 10399] gi|254203741|ref|ZP_04910101.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei FMH] gi|254260739|ref|ZP_04951793.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1710a] gi|254360231|ref|ZP_04976501.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei 2002721280] gi|76578267|gb|ABA47742.1| conserved hypothetical protein TIGR00043, putative [Burkholderia pseudomallei 1710b] gi|121228785|gb|ABM51303.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei SAVP1] gi|124294661|gb|ABN03930.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei NCTC 10229] gi|126243959|gb|ABO07052.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei NCTC 10247] gi|147745253|gb|EDK52333.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei FMH] gi|148029471|gb|EDK87376.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei 2002721280] gi|160698041|gb|EDP88011.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei ATCC 10399] gi|238522405|gb|EEP85849.1| putative conserved hypothetical protein [Burkholderia mallei GB8 horse 4] gi|243061633|gb|EES43819.1| conserved hypothetical protein TIGR00043 [Burkholderia mallei PRL-20] gi|254219428|gb|EET08812.1| conserved hypothetical protein TIGR00043 [Burkholderia pseudomallei 1710a] Length = 271 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F ++ F + Sbjct: 122 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIFSDTQF---TVRFVGADEGR 173 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 174 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 229 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 230 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 271 >gi|254467206|ref|ZP_05080617.1| conserved hypothetical protein TIGR00043 [Rhodobacterales bacterium Y4I] gi|206688114|gb|EDZ48596.1| conserved hypothetical protein TIGR00043 [Rhodobacterales bacterium Y4I] Length = 170 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 18/173 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I +E+A W + L L E + + + + E+SL+ D I L Sbjct: 1 MTLDITIEDARW-QQAGLEPLAEEA-----VAAVLAHFGLDAEMCEISLLGCDDAEIAGL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R PTNVLS+P D + LGDI ++Y EA+ Sbjct: 55 NAEFREKPVPTNVLSWPAEERAADTDGGTPVPPEPDFTGEIPLGDIAISYGTCAREASEA 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 G+ +H HLI+HG LHLLGYDH+ D+DA +MEG+E IL +GI +PY V+ Sbjct: 115 GRTLADHARHLIVHGTLHLLGYDHIRDRDAALMEGIEVLILGKMGIANPYIVE 167 >gi|56421026|ref|YP_148344.1| putative metalloprotease [Geobacillus kaustophilus HTA426] gi|261418491|ref|YP_003252173.1| metalloprotease [Geobacillus sp. Y412MC61] gi|297529343|ref|YP_003670618.1| hypothetical protein GC56T3_0999 [Geobacillus sp. C56-T3] gi|319767548|ref|YP_004133049.1| hypothetical protein GYMC52_2525 [Geobacillus sp. Y412MC52] gi|59799076|sp|Q5KX10|RRMF_GEOKA RecName: Full=Probable rRNA maturation factor gi|56380868|dbj|BAD76776.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374948|gb|ACX77691.1| protein of unknown function UPF0054 [Geobacillus sp. Y412MC61] gi|297252595|gb|ADI26041.1| protein of unknown function UPF0054 [Geobacillus sp. C56-T3] gi|317112414|gb|ADU94906.1| protein of unknown function UPF0054 [Geobacillus sp. Y412MC52] Length = 156 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 8/134 (5%) Query: 40 VSNLISKGYFVK--ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---- 93 + L+++ ++ + E+S+ F D+ RI +N +YRG D PT+VLSF Sbjct: 22 IERLLAEAAALENVPDGAEVSVTFVDNERIRAMNRDYRGKDAPTDVLSFALEEEGEEEVH 81 Query: 94 --DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +LGDIV++ + +A G F L L +HGFLHLLGYDH +++ VM Sbjct: 82 IVGADMPPVLGDIVISIPKAKEQAAAYGHSFMRELGFLAVHGFLHLLGYDHGTEEEERVM 141 Query: 152 EGLERSILEDLGIN 165 + IL G+ Sbjct: 142 FAKQEDILARFGLT 155 >gi|299535808|ref|ZP_07049129.1| hypothetical protein BFZC1_07283 [Lysinibacillus fusiformis ZC1] gi|298729008|gb|EFI69562.1| hypothetical protein BFZC1_07283 [Lysinibacillus fusiformis ZC1] Length = 157 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E E+S+ F + I+ +N EYRG D+PT+V+SF +LGDI+ Sbjct: 36 EPETEVSVTFVTNKAIQDINREYRGKDQPTDVISFALEELGQGEMEVIFEGMPRVLGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + + +A FE L L +HGFLHLLGYDH+ ++ VM + IL+ G+ Sbjct: 96 ISTDRAKEQAEEYNHSFERELGFLAVHGFLHLLGYDHMKPEEEKVMFAKQDEILQTYGL 154 >gi|261253664|ref|ZP_05946237.1| predicted metal-dependent hydrolase [Vibrio orientalis CIP 102891] gi|260937055|gb|EEX93044.1| predicted metal-dependent hydrolase [Vibrio orientalis CIP 102891] Length = 110 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 2/109 (1%) Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D LN +YRG DKPTNVLSFP F + G +LGD+++ +++E EA K Sbjct: 2 DEKESHQLNHDYRGKDKPTNVLSFP--FEAPPGIEIDLLGDLIICRQVVEREAIEQNKPL 59 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ +G NDPY + Sbjct: 60 MAHWAHMVVHGSLHLLGYDHIEDDEAEKMESLETEIMQRMGFNDPYIDE 108 >gi|313114170|ref|ZP_07799722.1| conserved hypothetical protein TIGR00043 [Faecalibacterium cf. prausnitzii KLE1255] gi|310623579|gb|EFQ06982.1| conserved hypothetical protein TIGR00043 [Faecalibacterium cf. prausnitzii KLE1255] Length = 163 Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 7/145 (4%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + ++ +A + ++ +F E E+S+ F D+ I LN +YR PT+VLS Sbjct: 14 VKVPSGLRILIRRACNAVLEYEHF--EAPAEISVTFVDNAAIAELNNQYRNKPMPTDVLS 71 Query: 86 FPTA----FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP + + MLGDIV++ E + +AN+ G + + L +H LHLLGYD Sbjct: 72 FPLGVNGKYDVDENNGCKMLGDIVISMERAQEQANLYGHPLQREVAFLTVHSMLHLLGYD 131 Query: 142 HVDDK-DACVMEGLERSILEDLGIN 165 H + +A M E ++L LG+ Sbjct: 132 HENGGLEAMRMREKEEAVLLQLGLP 156 >gi|91775004|ref|YP_544760.1| hypothetical protein Mfla_0649 [Methylobacillus flagellatus KT] gi|122400164|sp|Q1H3L8|RRMF_METFK RecName: Full=Probable rRNA maturation factor gi|91708991|gb|ABE48919.1| protein of unknown function UPF0054 [Methylobacillus flagellatus KT] Length = 149 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 23/166 (13%) Query: 8 LPR--LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +PR +++Q A E +E R E +L D Sbjct: 1 MPRLAMNVQYASEWDSLPNEKQFRKWARAALRV---------------DTEATLRIVDEE 45 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG D TNVL+FP ++GDI+L ++ EA E+H Sbjct: 46 EGRMLNRDYRGKDYATNVLTFPLEE------EPWLVGDIILCAPVVAREAAEQNITLESH 99 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL +HG LH+ GYDH D+ A +ME +E + LG DPY + Sbjct: 100 YAHLTVHGILHMHGYDHEDEHQAELMESIESFTMIQLGYPDPYSSE 145 >gi|54310005|ref|YP_131025.1| putative metalloprotease [Photobacterium profundum SS9] gi|59799114|sp|Q6LNA3|RRMF_PHOPR RecName: Full=Probable rRNA maturation factor gi|46914444|emb|CAG21223.1| Putative predicted metal dependent hydrolase [Photobacterium profundum SS9] Length = 154 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 15/162 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ A EN E + E + ++ E+++ D + Sbjct: 5 LDLQYATENQEGLPSEDKFQQWFEAAVT------------LFQSDAEITIRIVDVKESQA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP F + G +LGD+++ +++EIEA K H H+ Sbjct: 53 LNLEYRGKDKPTNVLSFP--FEAPPGIELDLLGDLIICRQVVEIEAKEQDKPLNAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D++A ME LE I+E +G DP+ + Sbjct: 111 VVHGTLHLLGYDHIEDEEAEEMEYLETEIIEKMGFADPFAAE 152 >gi|21283251|ref|NP_646339.1| hypothetical protein MW1522 [Staphylococcus aureus subsp. aureus MW2] gi|49486405|ref|YP_043626.1| hypothetical protein SAS1508 [Staphylococcus aureus subsp. aureus MSSA476] gi|253733180|ref|ZP_04867345.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH130] gi|300911792|ref|ZP_07129235.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH70] gi|26006922|sp|Q8NWB4|RRMF_STAAW RecName: Full=Probable rRNA maturation factor gi|56749708|sp|Q6G8Z7|RRMF_STAAS RecName: Full=Probable rRNA maturation factor gi|21204691|dbj|BAB95387.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244848|emb|CAG43309.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253728720|gb|EES97449.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH130] gi|300886038|gb|EFK81240.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus TCH70] Length = 155 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L+ +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGLT 153 >gi|319651597|ref|ZP_08005724.1| hypothetical protein HMPREF1013_02336 [Bacillus sp. 2_A_57_CT2] gi|317396664|gb|EFV77375.1| hypothetical protein HMPREF1013_02336 [Bacillus sp. 2_A_57_CT2] Length = 156 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 7/153 (4%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + DE + ++ + + N + V E E+S+ F + RI +N EYR D Sbjct: 4 NIDFLDETNELQENDIAKIEELINFAASKESV-EPESEVSITFVTNERIREINREYRDKD 62 Query: 79 KPTNVLSFPTAFASSD------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +PT+V+SF +LGDI+++ + +A G F L L +H Sbjct: 63 RPTDVISFAMEELGEGEIELIGADMPRVLGDIIISVAKAKEQAEEYGHSFIRELGFLAVH 122 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLHLLGYDH + +D M ++ IL++ G+ Sbjct: 123 GFLHLLGYDHENPEDEKKMFSRQKDILDEFGLT 155 >gi|24372762|ref|NP_716804.1| putative metalloprotease [Shewanella oneidensis MR-1] gi|29428198|sp|Q8EHN9|RRMF_SHEON RecName: Full=Probable rRNA maturation factor gi|24346837|gb|AAN54249.1|AE015561_9 conserved hypothetical protein TIGR00043 [Shewanella oneidensis MR-1] Length = 153 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+Q A + E L + ++ EL++ D+ + L Sbjct: 7 LDVQYATTSDYLPSEEQLALWVKTAIGNSM------------KQAELTIRIVDARESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NGTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICASVVENEAREQDKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYK 151 >gi|239827762|ref|YP_002950386.1| metalloprotease [Geobacillus sp. WCH70] gi|259646848|sp|C5D4S8|RRMF_GEOSW RecName: Full=Probable rRNA maturation factor gi|239808055|gb|ACS25120.1| protein of unknown function UPF0054 [Geobacillus sp. WCH70] Length = 156 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 7/153 (4%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + DE + T ++ + + N ++ V + E+ + F D+ RI +N +YRG D Sbjct: 4 NIDFIDETNEVTKEQMNIIEQLLNYAAEIEHV-PSGAEVGISFVDNERIRIINRDYRGKD 62 Query: 79 KPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +PT+V+SF +LGDI+++ + +A G F L L +H Sbjct: 63 QPTDVISFALEEKGEGEVEIVDADIPPLLGDIIISIPKAKEQAKEYGHSFMRELGFLAVH 122 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLHLLGYDH +++ +M ++ ILE G+ Sbjct: 123 GFLHLLGYDHKTEEEEKIMFSKQKDILERYGLT 155 >gi|295100850|emb|CBK98395.1| conserved hypothetical protein TIGR00043 [Faecalibacterium prausnitzii L2-6] Length = 163 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 7/145 (4%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + + ++ +A + ++ +F ++ E+S+ F D+ I LN +YR PT+VLS Sbjct: 14 IKVPSGLRILIRRACNAVLEYEHF--DDPAEISVTFVDNAAIAELNNQYRNKPMPTDVLS 71 Query: 86 FPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP + MLGDIV++ E + +A + G + + L +H LHLLGYD Sbjct: 72 FPLGENGVYDVDENNGCKMLGDIVISMERAQEQATLYGHPLQREVAFLTVHSMLHLLGYD 131 Query: 142 HVDDK-DACVMEGLERSILEDLGIN 165 H + +A M E ++L LG+ Sbjct: 132 HENGGLEAMRMREKEEAVLTQLGLP 156 >gi|49483818|ref|YP_041042.1| hypothetical protein SAR1647 [Staphylococcus aureus subsp. aureus MRSA252] gi|82751173|ref|YP_416914.1| hypothetical protein SAB1442c [Staphylococcus aureus RF122] gi|257425695|ref|ZP_05602119.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428356|ref|ZP_05604754.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430993|ref|ZP_05607373.1| metalloprotease [Staphylococcus aureus subsp. aureus 68-397] gi|257433681|ref|ZP_05610039.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436595|ref|ZP_05612639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|258423998|ref|ZP_05686880.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282904152|ref|ZP_06312040.1| putative metalloprotease [Staphylococcus aureus subsp. aureus C160] gi|282905979|ref|ZP_06313834.1| metalloprotease [Staphylococcus aureus subsp. aureus Btn1260] gi|282908889|ref|ZP_06316707.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911208|ref|ZP_06319010.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282914377|ref|ZP_06322163.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M899] gi|282916840|ref|ZP_06324598.1| metalloprotease [Staphylococcus aureus subsp. aureus D139] gi|282919346|ref|ZP_06327081.1| metalloprotease [Staphylococcus aureus subsp. aureus C427] gi|282924671|ref|ZP_06332339.1| metalloprotease [Staphylococcus aureus subsp. aureus C101] gi|283770646|ref|ZP_06343538.1| metalloprotease [Staphylococcus aureus subsp. aureus H19] gi|283958334|ref|ZP_06375785.1| putative metalloprotease [Staphylococcus aureus subsp. aureus A017934/97] gi|293503451|ref|ZP_06667298.1| metalloprotease [Staphylococcus aureus subsp. aureus 58-424] gi|293510468|ref|ZP_06669174.1| metalloprotease [Staphylococcus aureus subsp. aureus M809] gi|293531008|ref|ZP_06671690.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M1015] gi|295428148|ref|ZP_06820780.1| metalloprotease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590886|ref|ZP_06949524.1| hypothetical metal-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|56749737|sp|Q6GGD0|RRMF_STAAR RecName: Full=Probable rRNA maturation factor gi|123547820|sp|Q2YT09|RRMF_STAAB RecName: Full=Probable rRNA maturation factor gi|49241947|emb|CAG40642.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|82656704|emb|CAI81131.1| conserved hypothetical UPF0054 protein [Staphylococcus aureus RF122] gi|257271389|gb|EEV03535.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275197|gb|EEV06684.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278423|gb|EEV09059.1| metalloprotease [Staphylococcus aureus subsp. aureus 68-397] gi|257281774|gb|EEV11911.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257283946|gb|EEV14069.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|257845619|gb|EEV69651.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282313506|gb|EFB43901.1| metalloprotease [Staphylococcus aureus subsp. aureus C101] gi|282317156|gb|EFB47530.1| metalloprotease [Staphylococcus aureus subsp. aureus C427] gi|282319327|gb|EFB49679.1| metalloprotease [Staphylococcus aureus subsp. aureus D139] gi|282321558|gb|EFB51883.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M899] gi|282324903|gb|EFB55213.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327153|gb|EFB57448.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331271|gb|EFB60785.1| metalloprotease [Staphylococcus aureus subsp. aureus Btn1260] gi|282595770|gb|EFC00734.1| putative metalloprotease [Staphylococcus aureus subsp. aureus C160] gi|283460793|gb|EFC07883.1| metalloprotease [Staphylococcus aureus subsp. aureus H19] gi|283470848|emb|CAQ50059.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ST398] gi|283790483|gb|EFC29300.1| putative metalloprotease [Staphylococcus aureus subsp. aureus A017934/97] gi|290920276|gb|EFD97342.1| putative metalloprotease [Staphylococcus aureus subsp. aureus M1015] gi|291095117|gb|EFE25382.1| metalloprotease [Staphylococcus aureus subsp. aureus 58-424] gi|291466832|gb|EFF09352.1| metalloprotease [Staphylococcus aureus subsp. aureus M809] gi|295128506|gb|EFG58140.1| metalloprotease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575772|gb|EFH94488.1| hypothetical metal-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|298694852|gb|ADI98074.1| conserved hypothetical UPF0054 protein [Staphylococcus aureus subsp. aureus ED133] gi|312437961|gb|ADQ77032.1| hypothetical metal-binding protein [Staphylococcus aureus subsp. aureus TCH60] gi|315195473|gb|EFU25860.1| hypothetical protein CGSSa00_07380 [Staphylococcus aureus subsp. aureus CGS00] Length = 155 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L+ +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 D +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPDIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGLT 153 >gi|117924738|ref|YP_865355.1| hypothetical protein Mmc1_1438 [Magnetococcus sp. MC-1] gi|145572756|sp|A0L7K6|RRMF_MAGSM RecName: Full=Probable rRNA maturation factor gi|117608494|gb|ABK43949.1| protein of unknown function UPF0054 [Magnetococcus sp. MC-1] Length = 147 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 76/133 (57%), Gaps = 8/133 (6%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 S + +E+S++ +D ++ LN +YRG DKPTN+LSF + D Sbjct: 14 ASPAFGWALAPLEVSVLLSDDEAVQALNAQYRGKDKPTNILSFAMEEEADDAMPMPIMAG 73 Query: 98 -SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLE 155 +LGD++LAY+ ++ EA K F+ HL HL++HG LHLLGYDH + +A E E Sbjct: 74 EPRLLGDLILAYQTVQREAAEQDKPFDQHLTHLLVHGTLHLLGYDHERSEDEAQQQEARE 133 Query: 156 RSILEDLGINDPY 168 +IL LG+ +PY Sbjct: 134 IAILAQLGLPNPY 146 >gi|149926994|ref|ZP_01915252.1| hypothetical protein LMED105_09072 [Limnobacter sp. MED105] gi|149824215|gb|EDM83435.1| hypothetical protein LMED105_09072 [Limnobacter sp. MED105] Length = 165 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 9/156 (5%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 +A++ A+ D + + +K F+ + ++++ + LN ++ Sbjct: 11 VAIQWAMQADHPPFSEVDNSRIRRW-----AKACFM--DRADITIRMVGEEEGQQLNRDF 63 Query: 75 RGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 RG D TNVL+FP +D + + DIV+ ++E EA GK+ +HL HLI+H Sbjct: 64 RGKDYATNVLTFPMDMPDLGADSGLPVFMADIVICPAVVEREALEQGKDPIDHLAHLIVH 123 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LH GY H D A +ME E IL+ I++PY Sbjct: 124 GCLHAQGYVHESDNQAELMENREIEILKRFKISNPY 159 >gi|314936309|ref|ZP_07843656.1| putative metalloprotease [Staphylococcus hominis subsp. hominis C80] gi|313654928|gb|EFS18673.1| putative metalloprotease [Staphylococcus hominis subsp. hominis C80] Length = 153 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKP 80 I +V K + F KE ELS+ F D I+ +N YR DK Sbjct: 4 IDFNDHTNLVKDKWYHQIEDLINFAKEKENIHEDAELSVTFVDKDEIQEINKNYRDKDKV 63 Query: 81 TNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 T+V+SF D +LGDI++ ++ + +A FE L L +HGFLHL Sbjct: 64 TDVISFALEEDEPDIIGLDIPRVLGDIIICTDVAKEQAESYNHSFERELGFLALHGFLHL 123 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH++++D M G ++ IL G+ Sbjct: 124 LGYDHMNEEDEKEMFGRQKEILNAYGLT 151 >gi|160872543|ref|ZP_02062675.1| conserved hypothetical protein [Rickettsiella grylli] gi|159121342|gb|EDP46680.1| conserved hypothetical protein [Rickettsiella grylli] Length = 157 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 74/170 (43%), Gaps = 16/170 (9%) Query: 1 MSVKKVNLPRLD--LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 M K+N R+ LQI V N+ L+ + N I ++ Sbjct: 1 MHKTKINEKRIKITLQIRVRNSFIPSRYFLKRWVHTALSGQTENNI------------VN 48 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 + LN YR TN+LSFP F +S LGD+VL I EA Sbjct: 49 IRLVTQKESAKLNTLYRHKKGATNILSFP--FEPPPQVTSPFLGDLVLCATHINQEAKQQ 106 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K H HLIIHG LHL+GYDH +A ME LE +L++LG +PY Sbjct: 107 QKTRLAHWAHLIIHGCLHLIGYDHAHRHEAVKMETLEIQLLKELGYENPY 156 >gi|167568853|ref|ZP_02361727.1| hypothetical protein BoklC_03336 [Burkholderia oklahomensis C6786] Length = 262 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDE+ + K ++ + F + + ++ F + Sbjct: 113 PELDLAV-----QYGDEVGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 164 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 165 ALNNSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 220 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 221 LLVHGALHAQGYDHERGDEDAAEMEALEIDILAKLGFPNPYR 262 >gi|295687477|ref|YP_003591170.1| hypothetical protein Cseg_0020 [Caulobacter segnis ATCC 21756] gi|295429380|gb|ADG08552.1| protein of unknown function UPF0054 [Caulobacter segnis ATCC 21756] Length = 157 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 10/161 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E+ W E + +A ++ ++ + ++ T+ ++ L Sbjct: 3 ITVDIEIEDEAWTKAAE---DAEALVWRAAQAVLDAHEDIEGQG--IVILLTNDDTVQGL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R D TNVLSFP+ GDI LAY + EA GK +HL HL+ Sbjct: 58 NRDFRQKDYATNVLSFPSPPNPEGQI-----GDIALAYGVCAREAEEQGKPLAHHLQHLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HG LHLLGYDH D +A ME LER IL L + DPY D Sbjct: 113 AHGVLHLLGYDHESDDEAEAMEALEREILAGLDVPDPYASD 153 >gi|229543817|ref|ZP_04432876.1| protein of unknown function UPF0054 [Bacillus coagulans 36D1] gi|229324956|gb|EEN90632.1| protein of unknown function UPF0054 [Bacillus coagulans 36D1] Length = 156 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 7/148 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE + + + + + ++ V E+ ELS+ FTD+ I +N +YRG D+PT+V Sbjct: 9 DETNELEAEHLELVRTLLDYAARQEGV-EDGTELSVTFTDNEGIREINRDYRGKDQPTDV 67 Query: 84 LSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 +SF +LGDI+++ +A G FE L L +HGFLHL Sbjct: 68 ISFALEEMGEGEIEITGAEIPRVLGDIIISVPRAREQAEEYGHSFERELGFLAVHGFLHL 127 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH+ +D M G + IL+ G+ Sbjct: 128 LGYDHMTKEDETEMFGRQNEILDRYGLK 155 >gi|126652812|ref|ZP_01724957.1| hypothetical protein BB14905_09040 [Bacillus sp. B14905] gi|126590348|gb|EAZ84468.1| hypothetical protein BB14905_09040 [Bacillus sp. B14905] Length = 157 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIV 105 E E+S+ F + I+ +N EYRG D+PT+V+SF +LGDI+ Sbjct: 36 EPETEVSVTFVTNDTIQDINREYRGKDQPTDVISFALEELGEGEMTVTFEGMPRILGDII 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + + +A FE L L +HGFLHLLGYDH++ ++ VM + IL+ G+ Sbjct: 96 ISTDRAKEQAEEYNHSFERELGFLAVHGFLHLLGYDHMEPEEEKVMFTKQDEILQTFGL 154 >gi|297207711|ref|ZP_06924146.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887728|gb|EFH26626.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 155 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L+ +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDVPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGLT 153 >gi|198282886|ref|YP_002219207.1| hypothetical protein Lferr_0750 [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247407|gb|ACH83000.1| protein of unknown function UPF0054 [Acidithiobacillus ferrooxidans ATCC 53993] Length = 165 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + RL L++AV++ + + R +A+S S + I ELSL F + Sbjct: 1 MSRLYLRMAVDDVVAAMPLPPRGEVRRSILQALSA-PSARVSADDRIRELSLTFVGDAEM 59 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YR PTN LSFP A +LGDIV+A ++ EA GK +H Sbjct: 60 AALNEGYRHKAAPTNCLSFPQD-ALPVLFRRDLLGDIVIAPAVVGREAAAQGKSLRDHYR 118 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL+IH LHLLGYDH DA ME LE +L ++G+ DPY Sbjct: 119 HLLIHSTLHLLGYDHELAADAQEMEALETRLLAEMGVADPY 159 >gi|269469147|gb|EEZ80692.1| hypothetical protein Sup05_0085 [uncultured SUP05 cluster bacterium] Length = 146 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 56/120 (46%), Positives = 73/120 (60%), Gaps = 2/120 (1%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 + + EL + I+ LN YR D+PTNVLSFP+ ++LGDIV+ Sbjct: 29 LGKGKSELLIRIVGKVEIQNLNKTYRDKDQPTNVLSFPSDL--PIEIDEMILGDIVICTS 86 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 I+ EA + K FE+HL+H+ IHG LHLLGYDHV+ DA ME LE ILE + IN+PYE Sbjct: 87 IVANEAKLQNKTFEHHLIHMAIHGTLHLLGYDHVEPMDAQKMESLEIKILEKMQINNPYE 146 >gi|254671437|emb|CBA08953.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 251 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA +L + E F + + + GY ++S Sbjct: 83 RAKKYPFLTLQRQRFHLNFENA--SSAANLPS--EHDFYRWAWSALKSGY----RRADIS 134 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF + C S + GD+++ +++ EA Sbjct: 135 LILLDEEAARAYNRDYRGKDYATNVLSFALNEGETLPCQVSEKLYGDLIICPQVVLKEAA 194 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY D Sbjct: 195 EQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGYPNPYRED 249 >gi|257439766|ref|ZP_05615521.1| putative metalloprotease [Faecalibacterium prausnitzii A2-165] gi|257197786|gb|EEU96070.1| putative metalloprotease [Faecalibacterium prausnitzii A2-165] Length = 163 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 7/145 (4%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + ++ +A + ++ +F + E+S+ F D+ I LN +YR PT+VLS Sbjct: 14 VKVPSGLRILIRRACNAVLEYEHF--DEPAEISVTFVDNAAIAELNNQYRNKPMPTDVLS 71 Query: 86 FPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP + MLGDIV++ E + +A + G + + L +H LHLLGYD Sbjct: 72 FPLGENGVYDVDENNGCKMLGDIVISMERAQEQATLYGHPLQREVAFLTVHSMLHLLGYD 131 Query: 142 HVDDK-DACVMEGLERSILEDLGIN 165 H + +A M E ++L LG+ Sbjct: 132 HENGGLEAMRMREKEEAVLTQLGLP 156 >gi|330960149|gb|EGH60409.1| metal-binding heat shock protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 166 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E E LR CE+ + ++ EL++ D Sbjct: 3 ELDLQVASETPA-PREDQLRLWCEMGLRQRSAD------------SELTIRLVDETEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKDYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKLIDAHWAHM 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 109 VIHGCLHLLGYDHLDDEEAEEMEALERTLLEELGYPDPYADD 150 >gi|16124310|ref|NP_418874.1| hypothetical protein CC_0054 [Caulobacter crescentus CB15] gi|221232991|ref|YP_002515427.1| metal-dependent hydrolase [Caulobacter crescentus NA1000] gi|26006909|sp|Q9AC14|RRMF_CAUCR RecName: Full=Probable rRNA maturation factor gi|254799469|sp|B8GX09|RRMF_CAUCN RecName: Full=Probable rRNA maturation factor gi|13421148|gb|AAK22042.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220962163|gb|ACL93519.1| predicted metal-dependent hydrolase [Caulobacter crescentus NA1000] Length = 157 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 10/161 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I +E+ W E + +A ++ ++ + ++ TD ++ L Sbjct: 3 ITVDIEIEDEAW---TTAEADAEALVWRAAQAVLDAHEDIEGQG--IVILLTDDDSVQAL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R D TNVLSFP+ GDI LAY + EA GK +HL HL+ Sbjct: 58 NRDFRKKDYATNVLSFPSPPNPEGQI-----GDIALAYGVCAREAAEQGKPLAHHLQHLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HG LHLLGYDH D +A ME LER IL L + DPY D Sbjct: 113 AHGVLHLLGYDHERDDEAEAMEALEREILAGLDVPDPYASD 153 >gi|257140192|ref|ZP_05588454.1| unkown domain/putative metalloprotease fusion protein [Burkholderia thailandensis E264] Length = 265 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 116 PELDLAV-----QYGDEIGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 167 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 168 TLNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 223 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 224 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 265 >gi|90414092|ref|ZP_01222075.1| hypothetical protein P3TCK_25855 [Photobacterium profundum 3TCK] gi|90324887|gb|EAS41415.1| hypothetical protein P3TCK_25855 [Photobacterium profundum 3TCK] Length = 154 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 15/162 (9%) Query: 11 LDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ A EN E + E + ++ E+++ D + Sbjct: 5 LDLQYATENQEGLPSEDEFQQWFEAAVT------------LFQSDAEITIRIVDVKESQA 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYRG DKPTNVLSFP F + G +LGD+++ +++EIEA K H H+ Sbjct: 53 LNLEYRGKDKPTNVLSFP--FETPPGIELDLLGDLIICRQVVEIEAKEQDKPLNAHWAHM 110 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D++A ME LE I+E +G DP+ + Sbjct: 111 VVHGTLHLLGYDHIEDEEAEEMESLETEIIEKMGFADPFAAE 152 >gi|307822346|ref|ZP_07652578.1| protein of unknown function UPF0054 [Methylobacter tundripaludum SV96] gi|307736912|gb|EFO07757.1| protein of unknown function UPF0054 [Methylobacter tundripaludum SV96] Length = 153 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 14/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++Q E+A D+ ++ + E+ + D L Sbjct: 4 IEIQAVFESAGQPDQQQIQLWVDTALD------------DYGQDTEIVVRIVDEQESAEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR PTN+LSFP +G +LGD+V+ ++E EA K +H H+I Sbjct: 52 NEQYRHKSGPTNILSFPV--DVPEGIELDLLGDLVICAPVVEKEALEQDKLLAHHWAHII 109 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH+DD +A +ME E +IL L IN+PY Sbjct: 110 VHGVLHLLGYDHIDDDEAELMENKEIAILNKLHINNPY 147 >gi|86747718|ref|YP_484214.1| hypothetical protein RPB_0592 [Rhodopseudomonas palustris HaA2] gi|123004691|sp|Q2J2K7|RRMF_RHOP2 RecName: Full=Probable rRNA maturation factor gi|86570746|gb|ABD05303.1| Protein of unknown function UPF0054 [Rhodopseudomonas palustris HaA2] Length = 195 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 84/163 (51%), Gaps = 11/163 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ + W E E +A+ + EL+++ TD I LN Sbjct: 33 EVVIAADCWRSEAS----AEATVLRAIEAA-AAMVDADTGEAELAVMLTDDDGIRALNAS 87 Query: 74 YRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 YRG DKPTNVLSFP G + +LGDI +AY+ + EA+ GK F++HL Sbjct: 88 YRGQDKPTNVLSFPAPQPDYQGAAQGSDVAPKLLGDIAIAYQTVRREADDEGKRFDHHLS 147 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL +HGFLHL+GYDH D +A ME ER IL LGI DPY Sbjct: 148 HLAVHGFLHLVGYDHETDAEAETMEAAERRILAGLGIPDPYAD 190 >gi|146279876|ref|YP_001170034.1| hypothetical protein Rsph17025_3874 [Rhodobacter sphaeroides ATCC 17025] gi|145558117|gb|ABP72729.1| hypothetical protein Rsph17025_3874 [Rhodobacter sphaeroides ATCC 17025] Length = 167 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 82/169 (48%), Gaps = 19/169 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + +E+ W +E+ L L + L + L ++ D RI LN Sbjct: 5 VDTVIEDGRW-EELDLPALATRAAEATFAGLDLRPEGFI-----LVVMGCDDARIAELNG 58 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCS-------------SLMLGDIVLAYEIIEIEANVLG 119 +R KPTNVLS+P+ +SD LGDI +AYE EA G Sbjct: 59 TFRQKGKPTNVLSWPSEERASDEAGVAPEPPEPGEPEDPEHLGDIAIAYETCAREAAEQG 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H+ HL++HG LHLLGYDHVD+ DA +ME E IL LG+ DPY Sbjct: 119 KPVPDHVTHLLVHGILHLLGYDHVDEADADLMEATETRILAGLGVPDPY 167 >gi|15924560|ref|NP_372094.1| hypothetical protein SAV1570 [Staphylococcus aureus subsp. aureus Mu50] gi|15927150|ref|NP_374683.1| hypothetical protein SA1399 [Staphylococcus aureus subsp. aureus N315] gi|57651963|ref|YP_186467.1| hypothetical protein SACOL1627 [Staphylococcus aureus subsp. aureus COL] gi|87160129|ref|YP_494225.1| hypothetical protein SAUSA300_1530 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195379|ref|YP_500183.1| hypothetical protein SAOUHSC_01672 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268054|ref|YP_001246997.1| hypothetical protein SaurJH9_1628 [Staphylococcus aureus subsp. aureus JH9] gi|150394122|ref|YP_001316797.1| hypothetical protein SaurJH1_1662 [Staphylococcus aureus subsp. aureus JH1] gi|151221685|ref|YP_001332507.1| hypothetical protein NWMN_1473 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979888|ref|YP_001442147.1| hypothetical protein SAHV_1557 [Staphylococcus aureus subsp. aureus Mu3] gi|161509798|ref|YP_001575457.1| hypothetical protein USA300HOU_1571 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140010|ref|ZP_03564503.1| hypothetical protein SauraJ_00070 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316045|ref|ZP_04839258.1| hypothetical protein SauraC_07852 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006356|ref|ZP_05144957.2| hypothetical protein SauraM_07805 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793646|ref|ZP_05642625.1| metalloprotease [Staphylococcus aureus A9781] gi|258411054|ref|ZP_05681334.1| metalloprotease [Staphylococcus aureus A9763] gi|258420142|ref|ZP_05683097.1| metalloprotease [Staphylococcus aureus A9719] gi|258437402|ref|ZP_05689386.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443608|ref|ZP_05691947.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446815|ref|ZP_05694969.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258448729|ref|ZP_05696841.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258450601|ref|ZP_05698663.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258453546|ref|ZP_05701524.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049144|ref|ZP_06022021.1| hypothetical protein SAD30_0301 [Staphylococcus aureus D30] gi|262051230|ref|ZP_06023454.1| hypothetical protein SA930_1661 [Staphylococcus aureus 930918-3] gi|269203198|ref|YP_003282467.1| hypothetical protein SAAV_1562 [Staphylococcus aureus subsp. aureus ED98] gi|282893071|ref|ZP_06301305.1| metalloprotease [Staphylococcus aureus A8117] gi|282920119|ref|ZP_06327844.1| metalloprotease [Staphylococcus aureus A9765] gi|282928203|ref|ZP_06335808.1| metalloprotease [Staphylococcus aureus A10102] gi|284024629|ref|ZP_06379027.1| hypothetical protein Saura13_08560 [Staphylococcus aureus subsp. aureus 132] gi|294848601|ref|ZP_06789347.1| metalloprotease [Staphylococcus aureus A9754] gi|295406693|ref|ZP_06816498.1| metalloprotease [Staphylococcus aureus A8819] gi|296275808|ref|ZP_06858315.1| hypothetical protein SauraMR_05652 [Staphylococcus aureus subsp. aureus MR1] gi|297245725|ref|ZP_06929590.1| metalloprotease [Staphylococcus aureus A8796] gi|304380841|ref|ZP_07363501.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54040164|sp|P67137|RRMF_STAAN RecName: Full=Probable rRNA maturation factor gi|54042633|sp|P67136|RRMF_STAAM RecName: Full=Probable rRNA maturation factor gi|62901407|sp|Q5HFJ0|RRMF_STAAC RecName: Full=Probable rRNA maturation factor gi|122539405|sp|Q2FY02|RRMF_STAA8 RecName: Full=Probable rRNA maturation factor gi|123485628|sp|Q2FGF3|RRMF_STAA3 RecName: Full=Probable rRNA maturation factor gi|166231407|sp|A7X2W8|RRMF_STAA1 RecName: Full=Probable rRNA maturation factor gi|172048907|sp|A6QHB3|RRMF_STAAE RecName: Full=Probable rRNA maturation factor gi|189038954|sp|A8Z4A9|RRMF_STAAT RecName: Full=Probable rRNA maturation factor gi|189038968|sp|A5IT98|RRMF_STAA9 RecName: Full=Probable rRNA maturation factor gi|189038976|sp|A6U242|RRMF_STAA2 RecName: Full=Probable rRNA maturation factor gi|13701368|dbj|BAB42662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247341|dbj|BAB57732.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|57286149|gb|AAW38243.1| conserved hypothetical protein TIGR00043 [Staphylococcus aureus subsp. aureus COL] gi|87126103|gb|ABD20617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202937|gb|ABD30747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741123|gb|ABQ49421.1| protein of unknown function UPF0054 [Staphylococcus aureus subsp. aureus JH9] gi|149946574|gb|ABR52510.1| protein of unknown function UPF0054 [Staphylococcus aureus subsp. aureus JH1] gi|150374485|dbj|BAF67745.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722023|dbj|BAF78440.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368607|gb|ABX29578.1| hypothetical protein USA300HOU_1571 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257787618|gb|EEV25958.1| metalloprotease [Staphylococcus aureus A9781] gi|257840204|gb|EEV64668.1| metalloprotease [Staphylococcus aureus A9763] gi|257843853|gb|EEV68247.1| metalloprotease [Staphylococcus aureus A9719] gi|257848607|gb|EEV72595.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851014|gb|EEV74957.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854390|gb|EEV77339.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257858007|gb|EEV80896.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257861759|gb|EEV84558.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257864277|gb|EEV87027.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259160867|gb|EEW45887.1| hypothetical protein SA930_1661 [Staphylococcus aureus 930918-3] gi|259162813|gb|EEW47378.1| hypothetical protein SAD30_0301 [Staphylococcus aureus D30] gi|262075488|gb|ACY11461.1| hypothetical protein SAAV_1562 [Staphylococcus aureus subsp. aureus ED98] gi|269941060|emb|CBI49444.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282590010|gb|EFB95092.1| metalloprotease [Staphylococcus aureus A10102] gi|282594467|gb|EFB99452.1| metalloprotease [Staphylococcus aureus A9765] gi|282764389|gb|EFC04515.1| metalloprotease [Staphylococcus aureus A8117] gi|285817252|gb|ADC37739.1| predicted metal-dependent hydrolase [Staphylococcus aureus 04-02981] gi|294824627|gb|EFG41050.1| metalloprotease [Staphylococcus aureus A9754] gi|294968440|gb|EFG44464.1| metalloprotease [Staphylococcus aureus A8819] gi|297177376|gb|EFH36628.1| metalloprotease [Staphylococcus aureus A8796] gi|302751400|gb|ADL65577.1| putative metalloprotease [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340568|gb|EFM06502.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829958|emb|CBX34800.1| uncharacterized protein family UPF0054 family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129849|gb|EFT85839.1| hypothetical protein CGSSa03_02148 [Staphylococcus aureus subsp. aureus CGS03] gi|315198734|gb|EFU29062.1| hypothetical protein CGSSa01_09439 [Staphylococcus aureus subsp. aureus CGS01] gi|320140545|gb|EFW32399.1| conserved hypothetical protein TIGR00043 [Staphylococcus aureus subsp. aureus MRSA131] gi|320144082|gb|EFW35851.1| conserved hypothetical protein TIGR00043 [Staphylococcus aureus subsp. aureus MRSA177] gi|329314246|gb|AEB88659.1| Putative metalloprotease [Staphylococcus aureus subsp. aureus T0131] gi|329727414|gb|EGG63870.1| translation metalloprotein YbeY [Staphylococcus aureus subsp. aureus 21172] gi|329728375|gb|EGG64812.1| translation metalloprotein YbeY [Staphylococcus aureus subsp. aureus 21189] Length = 155 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L+ +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGLT 153 >gi|167561618|ref|ZP_02354534.1| hypothetical protein BoklE_03576 [Burkholderia oklahomensis EO147] Length = 262 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDE+ + K ++ + F + + ++ F + Sbjct: 113 PELDLAV-----QYGDEVGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 164 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 165 ALNNSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 220 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH D+DA ME LE IL LG +PY Sbjct: 221 LLVHGALHAQGYDHERGDEDAAEMEALEIDILAKLGFPNPYR 262 >gi|288555741|ref|YP_003427676.1| putative metalloprotease [Bacillus pseudofirmus OF4] gi|288546901|gb|ADC50784.1| putative metalloprotease [Bacillus pseudofirmus OF4] Length = 156 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 49/127 (38%), Positives = 68/127 (53%), Gaps = 6/127 (4%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---- 100 + Y + VELS+ F D RI+ +N EYRG D PT+V+SF D +M Sbjct: 29 AAEYERLDGEVELSITFVDEKRIQEINAEYRGKDIPTDVISFALNDEVEDEADMIMAGMP 88 Query: 101 --LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDI+++ I +A G FE L L++HGFLHLLGYDH+ ++D M + I Sbjct: 89 NALGDIIISVAHISRQAEEYGHSFERELGFLVVHGFLHLLGYDHMTEQDEKAMFSRQEEI 148 Query: 159 LEDLGIN 165 L G+ Sbjct: 149 LSAYGLT 155 >gi|319400906|gb|EFV89125.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909] Length = 155 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L E + + L+ +K N ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVETSWFDQIDQLLTFAKKKENIHNDAELSVTFVDKEEIQNINKVYRDKDKVTDVISFAL 71 Query: 89 AFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 D +LGDI++ ++ + +A G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFNDFEIPRVLGDIIICTDVAKEQAESYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 +D D M G + +IL + G+ Sbjct: 132 NDNDEKEMFGRQDAILNEFGLT 153 >gi|145558828|sp|Q1LR89|RRMF_RALME RecName: Full=Probable rRNA maturation factor Length = 197 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 7/133 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K + + + L++ F D TLN YRG D TNVL+F A D Sbjct: 68 RKQIEKWVKSALYADAA---LTVRFVDETEGRTLNRSYRGKDYATNVLTFAYAENDDDPV 124 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + GDIVL ++E EA K E H HLI+HG LH GY+H DD +A ME +E Sbjct: 125 A----GDIVLCCPVVESEAKAQKKSLEAHYAHLIVHGVLHAQGYEHDDDTEAEEMEAIET 180 Query: 157 SILEDLGINDPYE 169 L+ LG DPY+ Sbjct: 181 ETLQALGFEDPYK 193 >gi|229013523|ref|ZP_04170657.1| metalloprotease [Bacillus mycoides DSM 2048] gi|228747760|gb|EEL97629.1| metalloprotease [Bacillus mycoides DSM 2048] Length = 136 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 16 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 75 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 76 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 134 >gi|83595101|ref|YP_428853.1| hypothetical protein Rru_A3772 [Rhodospirillum rubrum ATCC 11170] gi|123525364|sp|Q2RMS9|RRMF_RHORT RecName: Full=Probable rRNA maturation factor gi|83578015|gb|ABC24566.1| Protein of unknown function UPF0054 [Rhodospirillum rubrum ATCC 11170] Length = 200 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 13 LQIAVENALWGDEI---HLRTLCEVVFAKAVSNLISKGYFVKEN-IVELSLVFTDSHRIE 68 +++AV+ A E + L E AV+ GY + +E+SL+ TD ++ Sbjct: 25 VRLAVDGAEGPWEALVPGVAALVEQAVLAAVAAGDPSGYGLTPGTPLEISLLLTDDAAVQ 84 Query: 69 TLNFEYRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YRG DKPTNVLSF + ++LGD+ LA E + EA LG +H Sbjct: 85 ALNRDYRGQDKPTNVLSFAALDAEEPLPEDGEPVLLGDVALARETVVREAADLGIAPADH 144 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 + HL++HG LHLLGYDH ++++A MEGLE +IL GI DPY Sbjct: 145 VFHLVVHGVLHLLGYDHEEEEEALDMEGLETAILGARGIADPYAD 189 >gi|228476121|ref|ZP_04060829.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|228269944|gb|EEK11424.1| conserved hypothetical protein [Staphylococcus hominis SK119] Length = 153 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 3/124 (2%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLML 101 +K ELS+ F D I+ +N YR DK T+V+SF D +L Sbjct: 28 AKEKENIHEDAELSVTFVDKDEIQEINKNYRDKDKVTDVISFALEEDEPDIIGLDIPRVL 87 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI++ ++ + +A FE L L +HGFLHLLGYDH++++D M G ++ IL Sbjct: 88 GDIIICTDVAKEQAESYNHSFERELGFLALHGFLHLLGYDHMNEEDEKEMFGRQKEILNA 147 Query: 162 LGIN 165 G+ Sbjct: 148 YGLT 151 >gi|160876547|ref|YP_001555863.1| putative metalloprotease [Shewanella baltica OS195] gi|189040143|sp|A9KZZ5|RRMF_SHEB9 RecName: Full=Probable rRNA maturation factor gi|160862069|gb|ABX50603.1| protein of unknown function UPF0054 [Shewanella baltica OS195] gi|315268741|gb|ADT95594.1| protein of unknown function UPF0054 [Shewanella baltica OS678] Length = 153 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 90/159 (56%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + +++A D + + FA V+N I N EL++ DS + L Sbjct: 3 LDLALDIQHATTCDWLP----TDEQFALWVTNAIGNSM----NEAELTIRIVDSRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICAAVVENEAREQQKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|113969346|ref|YP_733139.1| putative metalloprotease [Shewanella sp. MR-4] gi|122944050|sp|Q0HLI5|RRMF_SHESM RecName: Full=Probable rRNA maturation factor gi|113884030|gb|ABI38082.1| protein of unknown function UPF0054 [Shewanella sp. MR-4] Length = 153 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+Q A + E + ++ EL++ DS + L Sbjct: 7 LDVQYATASDYLPSEEQFALWVKTAIGNSMEQ------------AELTIRIVDSRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICATVVENEAREQDKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYK 151 >gi|329733127|gb|EGG69464.1| translation metalloprotein YbeY [Staphylococcus aureus subsp. aureus 21193] Length = 155 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L+ +K ++ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIQDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGLT 153 >gi|167835504|ref|ZP_02462387.1| hypothetical protein Bpse38_03366 [Burkholderia thailandensis MSMB43] Length = 268 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 119 PELDLAV-----QYGDEIGDAQRKPLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 170 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL I+E EA GK H H Sbjct: 171 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPIVEKEAREQGKTLVAHYAH 226 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 227 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 268 >gi|117919455|ref|YP_868647.1| putative metalloprotease [Shewanella sp. ANA-3] gi|145572749|sp|A0KTX2|RRMF_SHESA RecName: Full=Probable rRNA maturation factor gi|117611787|gb|ABK47241.1| protein of unknown function UPF0054 [Shewanella sp. ANA-3] Length = 153 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+Q A + E + ++ EL++ D+ + L Sbjct: 7 LDVQYATASDYLPSEDQFALWVKTAIGNSMEQ------------AELTIRIVDARESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICAAVVENEAREQDKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYK 151 >gi|224542132|ref|ZP_03682671.1| hypothetical protein CATMIT_01307 [Catenibacterium mitsuokai DSM 15897] gi|224524969|gb|EEF94074.1| hypothetical protein CATMIT_01307 [Catenibacterium mitsuokai DSM 15897] Length = 155 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 8/157 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ +N + E + + +A+ L E+ VE+S V D RI + Sbjct: 1 MNIDFVFDNEVDNFENNYEQDFTAIIEQALKTL------GIEDDVEVSCVLVDDERIHEI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR ID+ T+V+SF + LGDI ++ + + +A G + Sbjct: 55 NREYRHIDRSTDVISFAMEDNDQFYVEGMPRTLGDIFISVDHAKKQAEEYGHSLRREMCF 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L HG LHLLGYDH+ D+ M GL+ IL L I Sbjct: 115 LFTHGILHLLGYDHMTDEQEKEMFGLQDEILGALSIE 151 >gi|39933523|ref|NP_945799.1| hypothetical protein RPA0446 [Rhodopseudomonas palustris CGA009] gi|59799039|sp|Q6NCM6|RRMF_RHOPA RecName: Full=Probable rRNA maturation factor gi|39647369|emb|CAE25890.1| Protein of unknown function UPF0054 [Rhodopseudomonas palustris CGA009] Length = 190 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 87/157 (55%), Gaps = 6/157 (3%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ +E W E E +A+ + EL+++ TD I LN Sbjct: 33 EVVIEADCWQAEAS----AEATVLRAIETA-ADAVDADTGGAELAVMLTDDDHIRQLNAS 87 Query: 74 YRGIDKPTNVLSFPTAFAS-SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +RG DKPTNVLSFP A + MLGDI +AY+ + EA+ GK F++HL HL +H Sbjct: 88 FRGKDKPTNVLSFPAAQPEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFDHHLSHLAVH 147 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GFLHL+GYDH +++A ME ER+IL LGI DPY Sbjct: 148 GFLHLVGYDHETEEEAEEMEDAERAILARLGIPDPYA 184 >gi|289550659|ref|YP_003471563.1| predicted metal-dependent hydrolase [Staphylococcus lugdunensis HKU09-01] gi|315658154|ref|ZP_07911026.1| putative metal-dependent hydrolase [Staphylococcus lugdunensis M23590] gi|289180191|gb|ADC87436.1| predicted metal-dependent hydrolase [Staphylococcus lugdunensis HKU09-01] gi|315496483|gb|EFU84806.1| putative metal-dependent hydrolase [Staphylococcus lugdunensis M23590] Length = 153 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 8/148 (5%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKP 80 I ++V + F KE ELS+ F D I+ +N YR DK Sbjct: 4 IDFSDHTQMVDEAWFQQIDDLLNFAKEQEGITQDAELSVTFVDKEEIQQINKIYRDKDKV 63 Query: 81 TNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 T+V+SF + +LGDI++ ++ + +A G FE L L +HGFLHL Sbjct: 64 TDVISFALEEDEPEITGLEIPRVLGDIIICTDVAQEQATTYGHSFERELGFLALHGFLHL 123 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH++++D M G + +IL G+ Sbjct: 124 LGYDHMNEEDEKKMFGRQETILTAYGLT 151 >gi|50593431|gb|AAT79462.1| putative metal-dependent hydrolase [Agrobacterium luteum] Length = 186 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 + WG E L A++ + +E+S+ +D+ ++TLN YRG D Sbjct: 27 SPQWGTEPEWPDLAARAAKAAIAASSRADLMSRNFDIEVSVKLSDNAEVQTLNKAYRGKD 86 Query: 79 KPTNVLSFPTAFAS------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 KPTNVLSFP + +LGDI+LAYE EA F +H+ HLI+H Sbjct: 87 KPTNVLSFPQIQPDLLDTLANTDDGEALLGDIILAYETCRDEAVAKDISFSSHITHLIVH 146 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHLLGYDH ++ DA VME E + L LGI +PY Sbjct: 147 GSLHLLGYDHENEVDAGVMENCEINALATLGIANPY 182 >gi|253732223|ref|ZP_04866388.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724012|gb|EES92741.1| possible metal-dependent hydrolase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 155 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L+ +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLELAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGLT 153 >gi|167579898|ref|ZP_02372772.1| hypothetical protein BthaT_17231 [Burkholderia thailandensis TXDOH] gi|167617971|ref|ZP_02386602.1| hypothetical protein BthaB_16811 [Burkholderia thailandensis Bt4] Length = 265 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 116 PELDLAV-----QYGDEIGDAQRRSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 167 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 TLN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 168 TLNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 223 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 224 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 265 >gi|134300321|ref|YP_001113817.1| putative metalloprotease [Desulfotomaculum reducens MI-1] gi|189039698|sp|A4J7D9|RRMF_DESRM RecName: Full=Probable rRNA maturation factor gi|134053021|gb|ABO50992.1| protein of unknown function UPF0054 [Desulfotomaculum reducens MI-1] Length = 153 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 57/144 (39%), Positives = 76/144 (52%), Gaps = 9/144 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E +L L E V ++ S+GY E+ L+F D + I +LN EYRGIDK T+VL Sbjct: 15 EENLLKLVESVVKVSLE---SEGY---SPDAEVGLIFVDDNYIRSLNAEYRGIDKATDVL 68 Query: 85 SFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 SF +LGDIV++ + +A G F + +L HG LHLLGYD Sbjct: 69 SFALNEGEEMPEEEEAEDLLGDIVISLPTAQRQAAEYGHSFNREVAYLTAHGSLHLLGYD 128 Query: 142 HVDDKDACVMEGLERSILEDLGIN 165 H+ ++D VM E ILE LGIN Sbjct: 129 HMTEEDRQVMRQKEEGILERLGIN 152 >gi|90581603|ref|ZP_01237394.1| hypothetical protein VAS14_00556 [Vibrio angustum S14] gi|90437186|gb|EAS62386.1| hypothetical protein VAS14_00556 [Vibrio angustum S14] Length = 154 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ A E+ L + ++ + E+++ D L Sbjct: 5 LDLQHATES-----------LDGLPTEAEFQQWLNAAVIPFQADAEVTIRLVDEKESHAL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYRG D+PTNVLSFP F + G +LGD+++ +++E EA K + H H++ Sbjct: 54 NLEYRGKDRPTNVLSFP--FEAPPGMELELLGDLIICRQVVEKEALEQNKPLKAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D++A MEGLE I++++G DPY Sbjct: 112 VHGSLHLLGYDHIEDEEAEEMEGLETEIMQNMGFVDPY 149 >gi|319892627|ref|YP_004149502.1| metal-dependent hydrolase [Staphylococcus pseudintermedius HKU10-03] gi|317162323|gb|ADV05866.1| metal-dependent hydrolase [Staphylococcus pseudintermedius HKU10-03] gi|323464335|gb|ADX76488.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 153 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLML 101 +K + ELS+ F D I+ +N +YR DK T+V+SF +L Sbjct: 28 AKNEEGIDEDAELSVTFVDKAEIQEINRDYRQKDKVTDVISFAFEEEEDIFEGMDVPRVL 87 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI++ ++ +A G FE L L +HGFLHLLGYDH+ ++D VM G ++ IL Sbjct: 88 GDIIICTDVAAEQAEQYGHSFERELGFLALHGFLHLLGYDHMTEEDEKVMFGRQKDILNQ 147 Query: 162 LGIN 165 G+ Sbjct: 148 FGLT 151 >gi|228929346|ref|ZP_04092371.1| metalloprotease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935623|ref|ZP_04098438.1| metalloprotease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948016|ref|ZP_04110302.1| metalloprotease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987553|ref|ZP_04147672.1| metalloprotease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093372|ref|ZP_04224479.1| metalloprotease [Bacillus cereus Rock3-42] gi|229123841|ref|ZP_04253035.1| metalloprotease [Bacillus cereus 95/8201] gi|229141040|ref|ZP_04269583.1| metalloprotease [Bacillus cereus BDRD-ST26] gi|229157917|ref|ZP_04285991.1| metalloprotease [Bacillus cereus ATCC 4342] gi|229186542|ref|ZP_04313704.1| metalloprotease [Bacillus cereus BGSC 6E1] gi|229198429|ref|ZP_04325135.1| metalloprotease [Bacillus cereus m1293] gi|228585129|gb|EEK43241.1| metalloprotease [Bacillus cereus m1293] gi|228596973|gb|EEK54631.1| metalloprotease [Bacillus cereus BGSC 6E1] gi|228625576|gb|EEK82329.1| metalloprotease [Bacillus cereus ATCC 4342] gi|228642473|gb|EEK98761.1| metalloprotease [Bacillus cereus BDRD-ST26] gi|228659662|gb|EEL15308.1| metalloprotease [Bacillus cereus 95/8201] gi|228690028|gb|EEL43829.1| metalloprotease [Bacillus cereus Rock3-42] gi|228772285|gb|EEM20732.1| metalloprotease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811706|gb|EEM58041.1| metalloprotease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824063|gb|EEM69880.1| metalloprotease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830360|gb|EEM75972.1| metalloprotease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 143 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|229061996|ref|ZP_04199322.1| metalloprotease [Bacillus cereus AH603] gi|229135128|ref|ZP_04263930.1| metalloprotease [Bacillus cereus BDRD-ST196] gi|228648357|gb|EEL04390.1| metalloprotease [Bacillus cereus BDRD-ST196] gi|228717305|gb|EEL68978.1| metalloprotease [Bacillus cereus AH603] Length = 143 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|323440468|gb|EGA98180.1| hypothetical protein SAO11_0764 [Staphylococcus aureus O11] gi|323443242|gb|EGB00860.1| hypothetical protein SAO46_0891 [Staphylococcus aureus O46] Length = 155 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L + + K + +L+ +K E+ ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFAL 71 Query: 89 AFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 D +LGDI++ ++ + +AN G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPDIDYSDLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 + D M G + +IL G+ Sbjct: 132 TEADEKEMFGRQDTILNAYGLT 153 >gi|229163248|ref|ZP_04291203.1| metalloprotease [Bacillus cereus R309803] gi|228620311|gb|EEK77182.1| metalloprotease [Bacillus cereus R309803] Length = 143 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|103487640|ref|YP_617201.1| hypothetical protein Sala_2159 [Sphingopyxis alaskensis RB2256] gi|123078201|sp|Q1GR54|RRMF_SPHAL RecName: Full=Probable rRNA maturation factor gi|98977717|gb|ABF53868.1| protein of unknown function UPF0054 [Sphingopyxis alaskensis RB2256] Length = 168 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 79/157 (50%), Gaps = 6/157 (3%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A W D + A A + +VE+++ TD + TLN ++RG DK Sbjct: 10 APWPDALDWAARAAEAVAAAFAITPFAALADAAPLVEVAVRLTDDAEVHTLNRDFRGRDK 69 Query: 80 PTNVLSFPT------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 PTNVLSFP ++ ++LGDIVLA E EA+ G H HLI+HG Sbjct: 70 PTNVLSFPQVQNDLLESLANSDDGEILLGDIVLARETCAREADEKGVSLAAHATHLIVHG 129 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 LHL+GYDH+DD A ME LE L LGI +PY Sbjct: 130 ALHLVGYDHMDDVSAAAMEALEVKALASLGIANPYAD 166 >gi|229169051|ref|ZP_04296767.1| metalloprotease [Bacillus cereus AH621] gi|228614460|gb|EEK71569.1| metalloprotease [Bacillus cereus AH621] Length = 143 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|23099408|ref|NP_692874.1| putative metalloprotease [Oceanobacillus iheyensis HTE831] gi|29428201|sp|Q8EPX8|RRMF_OCEIH RecName: Full=Probable rRNA maturation factor gi|22777637|dbj|BAC13909.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 154 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 7/148 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE + + + + + + ++ V + ELS+ F D+ I+ LN YR D PT+V Sbjct: 7 DETNSVSEDYIDLIQRLLDFAAQKEGV-TSEAELSVNFVDNKEIQVLNRNYRQKDTPTDV 65 Query: 84 LSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 +SF ++ D L+LGDIV++ + + ++ E L L +HGFLHL Sbjct: 66 ISFAMQESNEDEMEIIGADGPLVLGDIVISVDKAKEQSIEYDHSLERELGFLAVHGFLHL 125 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH+ ++D M + IL + G+ Sbjct: 126 LGYDHMKEEDEKKMFSRQEEILGEFGVE 153 >gi|254511649|ref|ZP_05123716.1| conserved hypothetical protein TIGR00043 [Rhodobacteraceae bacterium KLH11] gi|221535360|gb|EEE38348.1| conserved hypothetical protein TIGR00043 [Rhodobacteraceae bacterium KLH11] Length = 164 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 20/172 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L++ +E+ W E + A++ ++ ++ ++ E+SL+ + RI L Sbjct: 1 MNLEVTLEDDRW-------QALEPLARHAIAEVLGYC-GLEADLCEISLLGCNDARIAIL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N E+R PTNVLS+P D + LGDI ++Y+ EA Sbjct: 53 NAEFRETPTPTNVLSWPAEDLAADLPGDKPRQPKPDFTGEIALGDIAISYDTCAREAAEA 112 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GK H+ HLI+HG LHLLGYDH+ D DA +ME +E IL LGI+DPY V Sbjct: 113 GKPMGAHVTHLIVHGALHLLGYDHIRDPDATLMEAVEVEILGKLGIDDPYNV 164 >gi|121534218|ref|ZP_01666043.1| protein of unknown function UPF0054 [Thermosinus carboxydivorans Nor1] gi|121307321|gb|EAX48238.1| protein of unknown function UPF0054 [Thermosinus carboxydivorans Nor1] Length = 155 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 5/131 (3%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---- 94 AV N ++ Y + E E+S+V D I LN +YR D PT+VLSF Sbjct: 24 AVLNKAAEVYGLSEQ-TEVSIVLVDDEYIFELNRQYRDKDVPTDVLSFALNEGDEPAIIN 82 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 ++++LGDIV++ E +A G E L +L +HG LHLLGYDH +++ M Sbjct: 83 DPAAMLLGDIVISLETAARQAEEFGHGLERELAYLTLHGMLHLLGYDHETEEERVKMRNE 142 Query: 155 ERSILEDLGIN 165 E IL LGI Sbjct: 143 EEYILSQLGIT 153 >gi|242242843|ref|ZP_04797288.1| possible metal-dependent hydrolase [Staphylococcus epidermidis W23144] gi|242233706|gb|EES36018.1| possible metal-dependent hydrolase [Staphylococcus epidermidis W23144] Length = 155 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-----DGCSSL 99 +K N ELS+ D I+ +N YR DK T+V+SF D Sbjct: 28 AKKKENIHNDAELSVTLVDKEEIQNINKVYRDKDKVTDVISFALEEDEPEIDFNDFDIPR 87 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDI++ ++ + +A G FE L L +HGFLHLLGYDH++D D M G + +IL Sbjct: 88 VLGDIIICTDVAKEQAESYGHSFERELGFLALHGFLHLLGYDHMNDNDEKEMFGRQDAIL 147 Query: 160 EDLGIN 165 + G+ Sbjct: 148 NEFGLT 153 >gi|261366880|ref|ZP_05979763.1| putative metalloprotease [Subdoligranulum variabile DSM 15176] gi|282570994|gb|EFB76529.1| putative metalloprotease [Subdoligranulum variabile DSM 15176] Length = 166 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 7/145 (4%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + ++ ++ + ++ F E E+S+ F D+HRI LN +YR D T+VLS Sbjct: 14 VKIPSGLRILIRRSCNAVLDFEKF--EGSAEISVTFVDNHRIHELNKQYRDKDSATDVLS 71 Query: 86 FPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP + + +LGDIV++ E +A + G + + +L +H LHLLGYD Sbjct: 72 FPMGENGEYDIDEDNGCKILGDIVISMERAMEQAELYGHSLQREVAYLTVHSMLHLLGYD 131 Query: 142 HVDDK-DACVMEGLERSILEDLGIN 165 H +A M E ++L LG+ Sbjct: 132 HEASGLEAVRMREKEEAVLIKLGLP 156 >gi|153001814|ref|YP_001367495.1| putative metalloprotease [Shewanella baltica OS185] gi|304410290|ref|ZP_07391909.1| protein of unknown function UPF0054 [Shewanella baltica OS183] gi|307301999|ref|ZP_07581757.1| protein of unknown function UPF0054 [Shewanella baltica BA175] gi|166229104|sp|A6WRJ3|RRMF_SHEB8 RecName: Full=Probable rRNA maturation factor gi|151366432|gb|ABS09432.1| protein of unknown function UPF0054 [Shewanella baltica OS185] gi|304351699|gb|EFM16098.1| protein of unknown function UPF0054 [Shewanella baltica OS183] gi|306914037|gb|EFN44458.1| protein of unknown function UPF0054 [Shewanella baltica BA175] Length = 153 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + +++A D + + FA V+ I N EL++ DS + L Sbjct: 3 LDLALDIQHATTCDWLP----TDEQFALWVTTAIGNSM----NEAELTIRIVDSRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICAAVVENEAREQQKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|312110181|ref|YP_003988497.1| hypothetical protein GY4MC1_1074 [Geobacillus sp. Y4.1MC1] gi|311215282|gb|ADP73886.1| protein of unknown function UPF0054 [Geobacillus sp. Y4.1MC1] Length = 156 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 7/153 (4%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + DE + T ++ + + N ++ V + E+ + F D+ RI +N +YRG D Sbjct: 4 NIDFIDETNEVTKEQMEMIERLLNYAAETEHVPDG-AEVGVSFVDNERIRIINRDYRGKD 62 Query: 79 KPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +PT+V+SF + L+LGDI+++ + +A G F L L +H Sbjct: 63 QPTDVISFALEEKGEGEIEIVGADAPLLLGDIIISIPKAKEQAEEYGHSFMRELGFLAVH 122 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLHLLGYDH +++ +M ++ ILE G+ Sbjct: 123 GFLHLLGYDHKTEEEEKIMFSKQKDILERYGLT 155 >gi|50086161|ref|YP_047671.1| hypothetical protein ACIAD3160 [Acinetobacter sp. ADP1] gi|59799110|sp|Q6F7W6|RRMF_ACIAD RecName: Full=Probable rRNA maturation factor gi|49532137|emb|CAG69849.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 159 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L ++++ A ++ L+ KA+ + + + E+ + D + L Sbjct: 1 MKLNLSLQQAFKSPDLALK---RAHIKKAIETTLD--HVEVKTDSEIGIACVDHEQSHRL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYRG DK TNVLSFP+ + LGD+V+ ++ EA K + H +H Sbjct: 56 NLEYRGKDKSTNVLSFPSDIPEEVLPLLDARPLGDLVICIPVVLDEAIEQHKTAQAHFMH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +++HG LHLLGYDH D+DA ME LE IL LG+ +PY+ Sbjct: 116 MLVHGTLHLLGYDHETSDEDAEEMEALEIEILAKLGLENPYQ 157 >gi|120597877|ref|YP_962451.1| putative metalloprotease [Shewanella sp. W3-18-1] gi|146293951|ref|YP_001184375.1| putative metalloprotease [Shewanella putrefaciens CN-32] gi|145572750|sp|A1RGV2|RRMF_SHESW RecName: Full=Probable rRNA maturation factor gi|166200358|sp|A4Y9E3|RRMF_SHEPC RecName: Full=Probable rRNA maturation factor gi|120557970|gb|ABM23897.1| protein of unknown function UPF0054 [Shewanella sp. W3-18-1] gi|145565641|gb|ABP76576.1| protein of unknown function UPF0054 [Shewanella putrefaciens CN-32] gi|319427328|gb|ADV55402.1| protein of unknown function UPF0054 [Shewanella putrefaciens 200] Length = 153 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+Q A + E L + + EL++ DS + L Sbjct: 7 LDVQYATTSDWLPTEEQLMLWAKTAI------------GNGMDRAELTIRIVDSRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFP--FEAPAEIELPLLGDLVICAAVVENEAREQNKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG +PY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTNPYK 151 >gi|319760452|ref|YP_004124390.1| hypothetical protein BVAF_319 [Candidatus Blochmannia vafer str. BVAF] gi|318039166|gb|ADV33716.1| conserved hypothetical protein [Candidatus Blochmannia vafer str. BVAF] Length = 155 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 12/158 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+LQIA N L + K I K +F+ +EL++ D + L Sbjct: 7 LNLQIACTN-----------LYGIPNKKIFQKWIKKIFFLYNKKIELTIRIVDIQEMLYL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N+ Y G PTNVLSFP G S +LGDIV+ +IIE E+ H H+I Sbjct: 56 NWYYAGKKHPTNVLSFPFK-TPLKGILSSLLGDIVICKQIIEYESKQYNISSIMHWAHMI 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGYDH+ +KDA +M +E +I++ G ++ Y Sbjct: 115 IHGSLHLLGYDHILNKDAELMHQMELNIMQKFGYHNYY 152 >gi|295399217|ref|ZP_06809199.1| protein of unknown function UPF0054 [Geobacillus thermoglucosidasius C56-YS93] gi|294978683|gb|EFG54279.1| protein of unknown function UPF0054 [Geobacillus thermoglucosidasius C56-YS93] Length = 156 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 7/153 (4%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + DE + T ++ + + N ++ V + E+ + F D+ RI +N +YRG D Sbjct: 4 NIDFIDETNEVTKEQMEMIERLLNYAAETEHVPDG-AEVGVSFVDNERIRIINRDYRGKD 62 Query: 79 KPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +PT+V+SF + L+LGDI+++ + +A G F L L +H Sbjct: 63 QPTDVISFALEEKGEGEIEIVGADAPLLLGDIIISIPKAKEQAEEYGHSFMRELGFLAVH 122 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLHLLGYDH +++ +M ++ ILE G+ Sbjct: 123 GFLHLLGYDHKTEEEEKIMFSKQKDILEQYGLT 155 >gi|152976733|ref|YP_001376250.1| putative metalloprotease [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189039807|sp|A7GSZ7|RRMF_BACCN RecName: Full=Probable rRNA maturation factor gi|152025485|gb|ABS23255.1| protein of unknown function UPF0054 [Bacillus cytotoxicus NVH 391-98] Length = 156 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIV 105 E+ ELS+ F D+ RI +N +YRG D+PT+V+SF MLGD++ Sbjct: 36 EDGTELSVTFVDNERIREINRDYRGKDQPTDVISFALEDMGEGEVEIIGADMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ IL G+ Sbjct: 96 ISIPRTKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGKQKEILGAFGL 154 >gi|254373021|ref|ZP_04988510.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570748|gb|EDN36402.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 168 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 44 AEVNLSIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLE 103 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 104 NEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 159 >gi|104783749|ref|YP_610247.1| putative metalloprotease [Pseudomonas entomophila L48] gi|122401726|sp|Q1I4H2|RRMF_PSEE4 RecName: Full=Probable rRNA maturation factor gi|95112736|emb|CAK17464.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 157 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 83/162 (51%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ +A D+ R CE+ + ++ E+++ D Sbjct: 3 ELDLQ-RATDAAAPDDAAFRRWCELALRQRTAD------------SEMTIRLVDEAEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVLSFP A D +LGD+V+ ++E EA GK E H HL Sbjct: 50 LNHTYRHKDYATNVLSFP-ADVPDDLLDIPLLGDLVICVPVVEREAREQGKALEAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG LHLLGYDH++D +A ME LER +L +LG DPY D Sbjct: 109 VIHGCLHLLGYDHIEDDEAEEMEALERELLAELGHPDPYADD 150 >gi|297539315|ref|YP_003675084.1| hypothetical protein M301_2139 [Methylotenera sp. 301] gi|297258662|gb|ADI30507.1| protein of unknown function UPF0054 [Methylotenera sp. 301] Length = 145 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 19/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +P L+L AV+ A +++ R+ + A+ E ++ D Sbjct: 1 MPTLNL--AVQYASTLNDLPSRSQFRLWAKAAI-----------RVDTEAAIRIVDEAEG 47 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN YRG D TNVL+FP ++GDI++ ++ EA K E H Sbjct: 48 RELNKAYRGKDYATNVLTFPLTE------EPHLMGDIIICAPVVAAEALAQNKPLEAHYA 101 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL +HG LHL GYDH + A +ME LE +I+ LG +PY Sbjct: 102 HLTVHGILHLHGYDHEVEAQAELMESLETAIITKLGYANPY 142 >gi|160945168|ref|ZP_02092394.1| hypothetical protein FAEPRAM212_02687 [Faecalibacterium prausnitzii M21/2] gi|158442899|gb|EDP19904.1| hypothetical protein FAEPRAM212_02687 [Faecalibacterium prausnitzii M21/2] gi|295105595|emb|CBL03139.1| conserved hypothetical protein TIGR00043 [Faecalibacterium prausnitzii SL3/3] Length = 163 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 7/145 (4%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + ++ +A + ++ +F + E+S+ F D+ I LN +YR PT+VLS Sbjct: 14 VKVPSGLRILIRRACNAVLEYEHF--DRPAEISVTFVDNAAIAELNNQYRNKPMPTDVLS 71 Query: 86 FPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP + +MLGDIV++ E +AN+ G + + L +H LHLLGYD Sbjct: 72 FPLGENGKYDIDENNGCMMLGDIVISMERAMEQANLYGHPLQREVAFLTVHSMLHLLGYD 131 Query: 142 HVDDK-DACVMEGLERSILEDLGIN 165 H + +A M E ++L LG+ Sbjct: 132 HENGGLEAMRMREKEEAVLLQLGLP 156 >gi|167643996|ref|YP_001681659.1| hypothetical protein Caul_0023 [Caulobacter sp. K31] gi|189030198|sp|B0T157|RRMF_CAUSK RecName: Full=Probable rRNA maturation factor gi|167346426|gb|ABZ69161.1| protein of unknown function UPF0054 [Caulobacter sp. K31] Length = 162 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L + I +E+ W E + +A ++ ++ + + ++ D ++TL Sbjct: 3 LTVDIEIEDEAW---TKAEPEVEALVWRAAQAVLDAHEDIEGHG--IVILLADDDSVQTL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R D TNVLSFP+ S +GDI LA+ + + EA GK +HL HL+ Sbjct: 58 NRDFRQKDYATNVLSFPSV-TSPGANPEGQIGDIALAFGVCQREAAEQGKSLAHHLQHLV 116 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HG LHLLGYDH DD DA ME ER IL L I DPY Sbjct: 117 AHGVLHLLGYDHQDDADAEAMEAFEREILAGLDIPDPYA 155 >gi|56707741|ref|YP_169637.1| hypothetical protein FTT_0616c [Francisella tularensis subsp. tularensis SCHU S4] gi|110670212|ref|YP_666769.1| hypothetical protein FTF0616c [Francisella tularensis subsp. tularensis FSC198] gi|254370244|ref|ZP_04986250.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874554|ref|ZP_05247264.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|59799004|sp|Q5NH55|RRMF_FRATT RecName: Full=Probable rRNA maturation factor gi|123359556|sp|Q14IK7|RRMF_FRAT1 RecName: Full=Probable rRNA maturation factor gi|56604233|emb|CAG45249.1| cconserved hypothetical protein, UPF0054 family [Francisella tularensis subsp. tularensis SCHU S4] gi|110320545|emb|CAL08632.1| cconserved hypothetical protein, UPF0054 family [Francisella tularensis subsp. tularensis FSC198] gi|151568488|gb|EDN34142.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254840553|gb|EET18989.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 168 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 44 AEVNLNIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLE 103 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 104 NEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 159 >gi|268611989|ref|ZP_06145716.1| hypothetical protein RflaF_21081 [Ruminococcus flavefaciens FD-1] Length = 170 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 8/147 (5%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ + ++ + +++ F K+ E+S+ F ++ I+ LN YR D T+VL Sbjct: 14 EVKVPVGIRLLIRRCCQAVLTTENFGKD--AEVSVSFVSNNEIKNLNKIYRNKDSVTDVL 71 Query: 85 SFPTAFAS-----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 SFP + ++ LGD+V++ E +A G E + L +H LHLLG Sbjct: 72 SFPLTGDDGTVEINPETGAVQLGDVVISLETAVKQAQNYGHSLEREVGFLTVHSMLHLLG 131 Query: 140 YDHVDDK-DACVMEGLERSILEDLGIN 165 YDH + D +M E S+LE LGI+ Sbjct: 132 YDHETSQLDQRIMREKEESVLEKLGIS 158 >gi|89053194|ref|YP_508645.1| hypothetical protein Jann_0703 [Jannaschia sp. CCS1] gi|122499500|sp|Q28UJ2|RRMF_JANSC RecName: Full=Probable rRNA maturation factor gi|88862743|gb|ABD53620.1| protein of unknown function UPF0054 [Jannaschia sp. CCS1] Length = 160 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 14/166 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I ++ W D + L L + +++L + + LS++ D RI TL Sbjct: 1 MEIDILIDAPHW-DALDLCGLAQSACVATLTDLS-----LDPDDFALSILACDDARIATL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM--------LGDIVLAYEIIEIEANVLGKEF 122 N ++RG PTNVLS+P+ + + ++ LGD+ LA+E EA GK Sbjct: 55 NTQFRGKPTPTNVLSWPSEDRAPETPGAMPHLSDLAAELGDLALAFETCAREAADGGKPL 114 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HLI+HG LH LG+DH D DA +ME LE IL LG+ DPY Sbjct: 115 PDHISHLIVHGLLHCLGFDHETDADADLMERLETRILARLGVPDPY 160 >gi|299822888|ref|ZP_07054774.1| probable metalloprotease [Listeria grayi DSM 20601] gi|299816417|gb|EFI83655.1| probable metalloprotease [Listeria grayi DSM 20601] Length = 161 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +PRL+L + E E + + FA Y E E+S+ FTD+ RI Sbjct: 1 MPRLELDMIDETEKLPKETNALVFDILQFAA--------DYLKLEEGTEMSVTFTDNERI 52 Query: 68 ETLNFEYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF + + LGDI+++ E E +A Sbjct: 53 REINREYRDKDQATDVISFALEELGEGETEIDWGELEVEVPRNLGDIIISTEKAEEQAAS 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E + L +HG LHLLGYDH++ ++ VM GL++ +L+ G+ Sbjct: 113 YGHTKEREVGFLAVHGLLHLLGYDHMEKEEEKVMFGLQKEVLDAYGL 159 >gi|229031951|ref|ZP_04187938.1| metalloprotease [Bacillus cereus AH1271] gi|229174977|ref|ZP_04302497.1| metalloprotease [Bacillus cereus MM3] gi|228608645|gb|EEK65947.1| metalloprotease [Bacillus cereus MM3] gi|228729415|gb|EEL80405.1| metalloprotease [Bacillus cereus AH1271] Length = 143 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|329911493|ref|ZP_08275544.1| A heat shock protein involved in translation, putative protease [Oxalobacteraceae bacterium IMCC9480] gi|327545865|gb|EGF30976.1| A heat shock protein involved in translation, putative protease [Oxalobacteraceae bacterium IMCC9480] Length = 154 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 3/141 (2%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L +V V + F EL++ F DS TLN +YR D TNVL+F Sbjct: 16 PRLATLVTRPLVRRWVQAALFAP---AELTVRFVDSDEGRTLNRDYRSKDYATNVLTFAY 72 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 D + D++L ++++ EA GK H HL++HG +H GYDH D+ +A Sbjct: 73 NDGEEDPNDDITRADLILCTDVLQAEALAQGKPLLAHAAHLVVHGVMHAQGYDHEDEVEA 132 Query: 149 CVMEGLERSILEDLGINDPYE 169 ME LE +L LG +PY+ Sbjct: 133 DEMEALEIEVLAKLGFGNPYQ 153 >gi|228916935|ref|ZP_04080497.1| metalloprotease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842759|gb|EEM87845.1| metalloprotease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 143 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKGILEAFGL 141 >gi|328675995|gb|AEB28670.1| hypothetical protein FN3523_0813 [Francisella cf. novicida 3523] Length = 162 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E+++ + I+ +N ++R DKPTN++SF + + LGDIV+A ++E Sbjct: 38 AEVNVNIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPEDIADDFLGDIVIAPAVLE 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GKE +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 98 KEAKEQGKELNHHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|229104934|ref|ZP_04235591.1| metalloprotease [Bacillus cereus Rock3-28] gi|228678508|gb|EEL32728.1| metalloprotease [Bacillus cereus Rock3-28] Length = 143 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGTEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|229098774|ref|ZP_04229712.1| metalloprotease [Bacillus cereus Rock3-29] gi|229117799|ref|ZP_04247164.1| metalloprotease [Bacillus cereus Rock1-3] gi|228665662|gb|EEL21139.1| metalloprotease [Bacillus cereus Rock1-3] gi|228684618|gb|EEL38558.1| metalloprotease [Bacillus cereus Rock3-29] Length = 143 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|319409916|emb|CBY90241.1| putative metalloprotease NMB0538 [Neisseria meningitidis WUE 2594] Length = 251 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 112 AERDFYRWAWSALKNEY----RRADISLILLDEEEARDYNRDYRGKDYATNVLSFALNEG 167 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 168 ETLPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 227 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 228 IMEAEEIRLMRAAGFPNPYQED 249 >gi|89074962|ref|ZP_01161407.1| hypothetical protein SKA34_20817 [Photobacterium sp. SKA34] gi|89049201|gb|EAR54765.1| hypothetical protein SKA34_20817 [Photobacterium sp. SKA34] Length = 154 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 13/158 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDLQ A E+ L + ++ + E+++ D TL Sbjct: 5 LDLQHATES-----------LDGLPTEAEFQQWLNAAVIPFQADAEVTIRLVDEKESHTL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N EYR D+PTNVLSFP F + G +LGD+++ +++E EA K + H H++ Sbjct: 54 NLEYRDKDRPTNVLSFP--FEAPPGVELELLGDLIICRQVVEKEALEQNKPLKAHWAHMV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH++D++A ME LE I++++G DPY Sbjct: 112 VHGSLHLLGYDHIEDEEAEEMENLETEIMQNMGFVDPY 149 >gi|149183353|ref|ZP_01861791.1| hypothetical protein BSG1_06587 [Bacillus sp. SG-1] gi|148848950|gb|EDL63162.1| hypothetical protein BSG1_06587 [Bacillus sp. SG-1] Length = 156 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 12/160 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L+I + DE + + + +++ + + G E EL++ F + RI+ + Sbjct: 1 MNLEI-----DFLDETNKLSESDRELVQSLLDY-AAGQENVEPASELTVSFVTNERIQEI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFEN 124 N EYR D+PT+V+SF D +LGDI+++ E + +A+ G F Sbjct: 55 NKEYRDKDQPTDVISFALEELGEDETVIVGDGIPRILGDIIISVEKAKDQADEYGHSFSR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HGFLHLLGYDH++++D M G ++ IL+ G+ Sbjct: 115 ELGFLALHGFLHLLGYDHMNEEDEKRMFGRQKEILDGYGL 154 >gi|57867019|ref|YP_188713.1| hypothetical protein SERP1137 [Staphylococcus epidermidis RP62A] gi|62901408|sp|Q5HNX7|RRMF_STAEQ RecName: Full=Probable rRNA maturation factor gi|57637677|gb|AAW54465.1| conserved hypothetical protein TIGR00043 [Staphylococcus epidermidis RP62A] Length = 155 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L E + + L+ +K N ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVETSWLDQIDQLLTFAKKKENIHNDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFAL 71 Query: 89 AFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 D +LGDI++ ++ + ++ G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFNDFDIPRVLGDIIICTDVAKEQSESYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 +D D M G + +IL + G+ Sbjct: 132 NDNDEKEMFGRQDAILNEFGLT 153 >gi|319935426|ref|ZP_08009863.1| metalloprotease [Coprobacillus sp. 29_1] gi|319809642|gb|EFW06055.1| metalloprotease [Coprobacillus sp. 29_1] Length = 153 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 5/150 (3%) Query: 19 NALWGDEIHL-RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 + ++ DE+ L + E F K V + Y E+ VELS + D RI +N EYR I Sbjct: 4 DFVYEDELKLSKDNYEQQFIKIVEAALQ--YLKIEDDVELSCIIVDDERIHEINKEYRNI 61 Query: 78 DKPTNVLSFPTAFASSDGCSSLM--LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 D+ T+V+SF + + LGDI ++Y I+A + + L HG L Sbjct: 62 DRSTDVISFALEDNDQFYVAGMPRSLGDIFISYHHACIQAEEYQHTLKREMCFLFTHGLL 121 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HLLGYDH++++D M L++ IL LGI Sbjct: 122 HLLGYDHMNEEDEKEMFTLQKEILNQLGIE 151 >gi|27468175|ref|NP_764812.1| hypothetical protein SE1257 [Staphylococcus epidermidis ATCC 12228] gi|251810987|ref|ZP_04825460.1| metal-dependent hydrolase [Staphylococcus epidermidis BCM-HMP0060] gi|282876004|ref|ZP_06284871.1| metalloprotein, YbeY/ UPF0054family [Staphylococcus epidermidis SK135] gi|29428185|sp|Q8CSD3|RRMF_STAES RecName: Full=Probable rRNA maturation factor gi|27315721|gb|AAO04856.1|AE016748_90 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|251805497|gb|EES58154.1| metal-dependent hydrolase [Staphylococcus epidermidis BCM-HMP0060] gi|281295029|gb|EFA87556.1| metalloprotein, YbeY/ UPF0054family [Staphylococcus epidermidis SK135] gi|329725400|gb|EGG61883.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU144] gi|329737264|gb|EGG73518.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU028] Length = 155 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L E + + L+ +K N ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVETSWFDQIDQLLTFAKKKENIHNDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFAL 71 Query: 89 AFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 D +LGDI++ ++ + ++ G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFNDFDIPRVLGDIIICTDVAKEQSESYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 +D D M G + +IL + G+ Sbjct: 132 NDNDEKEMFGRQDAILNEFGLT 153 >gi|154686792|ref|YP_001421953.1| putative metalloprotease [Bacillus amyloliquefaciens FZB42] gi|189039682|sp|A7Z6U6|RRMF_BACA2 RecName: Full=Probable rRNA maturation factor gi|154352643|gb|ABS74722.1| YqfG [Bacillus amyloliquefaciens FZB42] Length = 157 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 7/148 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE + + + + + ++ V++ E+S+ + I +N +YRG D PT+V Sbjct: 9 DETNSVSADALQEVEKLLQFAAEKEGVQDQ-AEVSVTIVTNEEIREINRDYRGKDTPTDV 67 Query: 84 LSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 +SF +LGDI+++ + + +A G F L L +HGFLHL Sbjct: 68 ISFALEEEGEDEVEIVGADMPPVLGDIIISADRTKEQAEEYGHSFMRELGFLAVHGFLHL 127 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH+ ++ M ++ +L++ G+ Sbjct: 128 LGYDHMTKEEEEEMFSKQKDLLDEYGLT 155 >gi|256851189|ref|ZP_05556578.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260660613|ref|ZP_05861528.1| metal-dependent hydrolase [Lactobacillus jensenii 115-3-CHN] gi|282934655|ref|ZP_06339898.1| putative metalloprotease [Lactobacillus jensenii 208-1] gi|297206054|ref|ZP_06923449.1| metal-dependent hydrolase [Lactobacillus jensenii JV-V16] gi|256616251|gb|EEU21439.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260548335|gb|EEX24310.1| metal-dependent hydrolase [Lactobacillus jensenii 115-3-CHN] gi|281301230|gb|EFA93531.1| putative metalloprotease [Lactobacillus jensenii 208-1] gi|297149180|gb|EFH29478.1| metal-dependent hydrolase [Lactobacillus jensenii JV-V16] Length = 174 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE + + K + +L+ +K K+N +E+S+ F D + +N +YRG Sbjct: 5 DITYNDETNFLADTSRDWRKWIMDLLLMAKKEISKDNNLEMSINFVDEDKSHQINRDYRG 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +I+ A G F+ Sbjct: 65 KDRPTDVISFAIEDGEEGVDLSSFIEDPDFTEDIGDLFMCISVIKRHAEEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH++ +A M G++ +LE+ G+ Sbjct: 125 YTLVHGFLHLNGYDHIEPAEAKEMFGIQGKVLEEYGLP 162 >gi|85705230|ref|ZP_01036329.1| hypothetical protein ROS217_17217 [Roseovarius sp. 217] gi|85670103|gb|EAQ24965.1| hypothetical protein ROS217_17217 [Roseovarius sp. 217] Length = 162 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 16/165 (9%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 + +E+ W L L E + +L + E+S++ D RI LN + Sbjct: 4 DVVIEDDRW-QAAGLEHLAERAARATLEHLS-----LDPEAWEISVLGCDDARIAALNED 57 Query: 74 YRGIDKPTNVLSFPTAFASSDGC----------SSLMLGDIVLAYEIIEIEANVLGKEFE 123 +R +PTNVLS+P+ ++ LGDI +A+E EA K Sbjct: 58 FRDKPQPTNVLSWPSEERGAEAAGVRPGLPVSGPDPELGDIAIAWETCLREAAEGDKSLA 117 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HLI+H LHLLGYDH+ D+DA +ME E IL LG++DPY Sbjct: 118 DHVTHLIVHAVLHLLGYDHLRDQDATLMETTEVEILGKLGVSDPY 162 >gi|293366469|ref|ZP_06613146.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319238|gb|EFE59607.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W2(grey)] gi|329735371|gb|EGG71663.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU045] Length = 155 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 7/142 (4%) Query: 31 LCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L E + + L+ +K N ELS+ F D I+ +N YR DK T+V+SF Sbjct: 12 LVETSWFDQIDQLLTFAKKKENIHNDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFAL 71 Query: 89 AFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 D +LGDI++ ++ + ++ G FE L L +HGFLHLLGYDH+ Sbjct: 72 EEDEPEIDFNDFDIPRVLGDIIICRDVAKEQSESYGHSFERELGFLALHGFLHLLGYDHM 131 Query: 144 DDKDACVMEGLERSILEDLGIN 165 +D D M G + +IL + G+ Sbjct: 132 NDNDEKEMFGRQDAILNEFGLT 153 >gi|192288881|ref|YP_001989486.1| hypothetical protein Rpal_0450 [Rhodopseudomonas palustris TIE-1] gi|192282630|gb|ACE99010.1| protein of unknown function UPF0054 [Rhodopseudomonas palustris TIE-1] Length = 167 Score = 157 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 86/157 (54%), Gaps = 6/157 (3%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ +E W E E +A+ + EL+++ TD I LN Sbjct: 10 EVVIEADCWQAEAS----AEATVLRAIETA-ADAVDADTGGAELAVMLTDDDHIRQLNAS 64 Query: 74 YRGIDKPTNVLSFPTAFAS-SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +R DKPTNVLSFP A + MLGDI +AY+ + EA+ GK F++HL HL +H Sbjct: 65 FRDKDKPTNVLSFPAAQPEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFDHHLSHLAVH 124 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GFLHL+GYDH D++A ME ER+IL LGI DPY Sbjct: 125 GFLHLVGYDHETDEEAEEMEDAERAILARLGIPDPYA 161 >gi|332686716|ref|YP_004456490.1| metal-dependent hydrolase [Melissococcus plutonius ATCC 35311] gi|332370725|dbj|BAK21681.1| metal-dependent hydrolase [Melissococcus plutonius ATCC 35311] Length = 159 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 14/159 (8%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVK-ENIVELSLVFTDSHRIETLNFEYRGI 77 + + DE + E F K L F+K + E+S+ FT + +I+ +N ++RG Sbjct: 2 DITFIDETN--QFSENYFTKIKELLQFSADFLKLPDTTEMSVTFTTNEKIQQINQKFRGK 59 Query: 78 DKPTNVLSFPTAFASSDG-----------CSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + PT+V+SF D LGDI+++ E E +A G FE L Sbjct: 60 NVPTDVISFALEDEGEDEFPIILDEMLTSLPPKNLGDIIISIEKAEEQAQDYGHSFEREL 119 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHL GYDH++++D M L+R IL+D G+ Sbjct: 120 GFLAVHGFLHLNGYDHMNEEDEKEMFDLQRKILDDYGLK 158 >gi|254374471|ref|ZP_04989952.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151572190|gb|EDN37844.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 168 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 44 AEVNLNIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLE 103 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 104 NEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 159 >gi|75762398|ref|ZP_00742269.1| Hypothetical metal-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899469|ref|YP_002447880.1| hypothetical protein BCG9842_B0816 [Bacillus cereus G9842] gi|226708103|sp|B7IYF4|RRMF_BACC2 RecName: Full=Probable rRNA maturation factor gi|74490110|gb|EAO53455.1| Hypothetical metal-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542257|gb|ACK94651.1| conserved hypothetical protein TIGR00043 [Bacillus cereus G9842] Length = 156 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 8/149 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVK--ENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 D I + + + ++ K ++ E+ E+S+ F D+ RI +N +YR D+PT Sbjct: 6 DFIDETEEVKEAYMSLIREVLEKAAQMENIEDGAEVSVTFVDNERIREINRDYRDKDQPT 65 Query: 82 NVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +V+SF MLGD++++ + +A G F+ L L +HGFL Sbjct: 66 DVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFL 125 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH+ +++ M G ++ ILE G+ Sbjct: 126 HLLGYDHMTEEEEKEMFGRQKEILEAFGL 154 >gi|47567867|ref|ZP_00238575.1| conserved hypothetical protein protein TIGR00043 [Bacillus cereus G9241] gi|47555544|gb|EAL13887.1| conserved hypothetical protein protein TIGR00043 [Bacillus cereus G9241] Length = 156 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|308174320|ref|YP_003921025.1| metal-dependent hydrolase [Bacillus amyloliquefaciens DSM 7] gi|307607184|emb|CBI43555.1| putative metal-dependent hydrolase [Bacillus amyloliquefaciens DSM 7] gi|328554267|gb|AEB24759.1| metal-binding heat shock protein [Bacillus amyloliquefaciens TA208] gi|328912664|gb|AEB64260.1| putative metal-dependent hydrolase [Bacillus amyloliquefaciens LL3] Length = 157 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 7/148 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE + + + + + ++ V++ E+S+ + I +N +YRG D PT+V Sbjct: 9 DETNSVSADALQEVEKLLQFAAEKEGVQDQ-AEVSVTIVTNDEIREINRDYRGKDTPTDV 67 Query: 84 LSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 +SF +LGDI+++ + + +A G F L L +HGFLHL Sbjct: 68 ISFALEEEGEDEVEIVGADMPPVLGDIIISADRTKEQAEEYGHSFMRELGFLAVHGFLHL 127 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH+ ++ M ++ +L++ G+ Sbjct: 128 LGYDHMTKEEEEEMFSKQKDLLDEYGLT 155 >gi|84515223|ref|ZP_01002585.1| hypothetical protein SKA53_01156 [Loktanella vestfoldensis SKA53] gi|84510506|gb|EAQ06961.1| hypothetical protein SKA53_01156 [Loktanella vestfoldensis SKA53] Length = 164 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 16/170 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + VE+ W + A+ S+ + ++ ++ E++++ D RI L Sbjct: 1 MSVDVVVEDLRWA------AVDIDALAQQASDAVFDRLGLEPSVFEIAVLACDDARIAAL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N ++RG PTNVLS+P+ D LGDI +AY+ EA G Sbjct: 55 NADFRGKPAPTNVLSWPSDERAPAVAGEMPLPPDPVMDTELGDIAIAYDTCLREAEAAGS 114 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +F +H +HL++HG LHLLG+DH D DA +MEGLE IL +G+++PY Sbjct: 115 QFIHHCLHLLVHGTLHLLGFDHERDLDATLMEGLEVEILGKMGVDNPYRD 164 >gi|254877220|ref|ZP_05249930.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843241|gb|EET21655.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 169 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 2/118 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEI 110 + E++L + I+ +N ++R DKPTN++SF + + GDIV+A E+ Sbjct: 47 SQAEVNLSIVSNQEIQQINKQFRHKDKPTNIISFEFEKPEGLPEDIADNFWGDIVIAPEV 106 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++ EA K ++H H+ IHG LHLLGYDH+DD +A ME LE +L +LGI +PY Sbjct: 107 LKKEAKEQNKNLDDHWQHIFIHGLLHLLGYDHIDDIEAEEMENLEIELLAELGIANPY 164 >gi|332678363|gb|AEE87492.1| predicted metal-dependent hydrolase [Francisella cf. novicida Fx1] Length = 162 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 38 AEVNLSIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLE 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 98 NEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|42783429|ref|NP_980676.1| putative metalloprotease [Bacillus cereus ATCC 10987] gi|59799126|sp|Q730N3|RRMF_BACC1 RecName: Full=Probable rRNA maturation factor gi|42739358|gb|AAS43284.1| conserved hypothetical protein TIGR00043 [Bacillus cereus ATCC 10987] Length = 156 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|229019527|ref|ZP_04176344.1| metalloprotease [Bacillus cereus AH1273] gi|229025769|ref|ZP_04182168.1| metalloprotease [Bacillus cereus AH1272] gi|228735477|gb|EEL86073.1| metalloprotease [Bacillus cereus AH1272] gi|228741783|gb|EEL91966.1| metalloprotease [Bacillus cereus AH1273] Length = 143 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD------GCSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 23 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIIGAEMPRMLGDLI 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 83 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 141 >gi|157693031|ref|YP_001487493.1| putative metalloprotease [Bacillus pumilus SAFR-032] gi|166987419|sp|A8FFB6|RRMF_BACP2 RecName: Full=Probable rRNA maturation factor gi|157681789|gb|ABV62933.1| possible metal-dependent hydrolase [Bacillus pumilus SAFR-032] Length = 159 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 8/149 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE + ++ + + + VK+ E+S+ + I +N EYRG D PT+V Sbjct: 9 DETGQVSKEQLEEVEKLLQFAADALEVKDQ-AEVSVTIVSNEEIHQINKEYRGKDAPTDV 67 Query: 84 LSFPTAFASSDGCS-------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 +SF +LGDI+++ + + +A G F L L IHGFLH Sbjct: 68 ISFALEEEGEGEIEIIGADDIPPVLGDIIISVDRTKEQAEEYGHSFMRELGFLTIHGFLH 127 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGIN 165 LLG+DH+ ++D M + IL+D G++ Sbjct: 128 LLGFDHMTEEDEKEMFAKQTKILDDYGLS 156 >gi|224456812|ref|ZP_03665285.1| hypothetical protein FtultM_03352 [Francisella tularensis subsp. tularensis MA00-2987] gi|282158912|gb|ADA78303.1| hypothetical protein NE061598_03525 [Francisella tularensis subsp. tularensis NE061598] Length = 162 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 38 AEVNLNIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLE 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 98 NEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|114046573|ref|YP_737123.1| putative metalloprotease [Shewanella sp. MR-7] gi|123131666|sp|Q0HXT9|RRMF_SHESR RecName: Full=Probable rRNA maturation factor gi|113888015|gb|ABI42066.1| protein of unknown function UPF0054 [Shewanella sp. MR-7] Length = 153 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + V+ A D + + A+ N + + EL++ D+ + L Sbjct: 3 LDLALDVQYATASDYLPSEEQFSLWVKTAIGNSMEQ--------AELTIRIVDARESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICAAVVENEAREQDKILEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYK 151 >gi|242373875|ref|ZP_04819449.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W1] gi|242348429|gb|EES40031.1| metal-dependent hydrolase [Staphylococcus epidermidis M23864:W1] Length = 155 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-----SL 99 +K E+ ELS+ F D I+ +N YR DK T+V+SF D Sbjct: 28 AKKQENIESDAELSVTFVDKDEIQNINKVYRDKDKVTDVISFALEEDEPDIDMNDLEIPR 87 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDI++ ++ + +A G FE L L +HGFLHLLGYDH+ + D M G + +IL Sbjct: 88 VLGDIIICTDVAQEQAESYGHSFERELGFLALHGFLHLLGYDHMTEDDEKEMFGRQDAIL 147 Query: 160 EDLGIN 165 G+ Sbjct: 148 NSYGLT 153 >gi|228902826|ref|ZP_04066971.1| metalloprotease [Bacillus thuringiensis IBL 4222] gi|228967368|ref|ZP_04128403.1| metalloprotease [Bacillus thuringiensis serovar sotto str. T04001] gi|228792403|gb|EEM39970.1| metalloprotease [Bacillus thuringiensis serovar sotto str. T04001] gi|228856835|gb|EEN01350.1| metalloprotease [Bacillus thuringiensis IBL 4222] Length = 154 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 8/149 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVK--ENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 D I + + + ++ K ++ E+ E+S+ F D+ RI +N +YR D+PT Sbjct: 4 DFIDETEEVKEAYMSLIREVLEKAAQMENIEDGAEVSVTFVDNERIREINRDYRDKDQPT 63 Query: 82 NVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +V+SF MLGD++++ + +A G F+ L L +HGFL Sbjct: 64 DVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFL 123 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH+ +++ M G ++ ILE G+ Sbjct: 124 HLLGYDHMTEEEEKEMFGRQKEILEAFGL 152 >gi|197106913|ref|YP_002132290.1| hypothetical protein PHZ_c3452 [Phenylobacterium zucineum HLK1] gi|196480333|gb|ACG79861.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 154 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I VE+ W + E + A ++ E ++L+ D + LN Sbjct: 2 IDIEVEDPAWTAALP---DAEALVRAAAKAALASEGAGGEG---VTLLLADDAAVRELNA 55 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +RG D TNVLSFP LGD+ LA + EA GK +HL HL++H Sbjct: 56 RFRGKDSATNVLSFPAP-----PNPERHLGDVALACGVCAREAAEQGKPLAHHLQHLVVH 110 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G LHLLGYDH+ + +A MEGLER IL LG+ DPY V Sbjct: 111 GVLHLLGYDHMREDEAEAMEGLERDILAGLGVPDPYAV 148 >gi|30264373|ref|NP_846750.1| putative metalloprotease [Bacillus anthracis str. Ames] gi|47529824|ref|YP_021173.1| putative metalloprotease [Bacillus anthracis str. 'Ames Ancestor'] gi|49187198|ref|YP_030450.1| putative metalloprotease [Bacillus anthracis str. Sterne] gi|49478831|ref|YP_038358.1| putative metalloprotease [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141201|ref|YP_085629.1| putative metalloprotease [Bacillus cereus E33L] gi|118479472|ref|YP_896623.1| putative metalloprotease [Bacillus thuringiensis str. Al Hakam] gi|165872063|ref|ZP_02216703.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0488] gi|167634675|ref|ZP_02392995.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0442] gi|167638548|ref|ZP_02396824.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0193] gi|170687424|ref|ZP_02878641.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0465] gi|170707368|ref|ZP_02897822.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0389] gi|177653283|ref|ZP_02935535.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0174] gi|190566886|ref|ZP_03019802.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis Tsiankovskii-I] gi|196034368|ref|ZP_03101777.1| conserved hypothetical protein TIGR00043 [Bacillus cereus W] gi|196039279|ref|ZP_03106585.1| conserved hypothetical protein TIGR00043 [Bacillus cereus NVH0597-99] gi|196046290|ref|ZP_03113516.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB108] gi|206978415|ref|ZP_03239284.1| conserved hypothetical protein TIGR00043 [Bacillus cereus H3081.97] gi|217961793|ref|YP_002340363.1| putative metalloprotease [Bacillus cereus AH187] gi|218905440|ref|YP_002453274.1| conserved hypothetical protein TIGR00043 [Bacillus cereus AH820] gi|222097748|ref|YP_002531805.1| metalloprotease [Bacillus cereus Q1] gi|225866284|ref|YP_002751662.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB102] gi|227817079|ref|YP_002817088.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. CDC 684] gi|229601436|ref|YP_002868592.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0248] gi|254684060|ref|ZP_05147920.1| putative metalloprotease [Bacillus anthracis str. CNEVA-9066] gi|254721894|ref|ZP_05183683.1| putative metalloprotease [Bacillus anthracis str. A1055] gi|254736408|ref|ZP_05194114.1| putative metalloprotease [Bacillus anthracis str. Western North America USA6153] gi|254741446|ref|ZP_05199133.1| putative metalloprotease [Bacillus anthracis str. Kruger B] gi|254750884|ref|ZP_05202923.1| putative metalloprotease [Bacillus anthracis str. Vollum] gi|254757788|ref|ZP_05209815.1| putative metalloprotease [Bacillus anthracis str. Australia 94] gi|301055795|ref|YP_003794006.1| hypothetical protein BACI_c42720 [Bacillus anthracis CI] gi|33301868|sp|Q81LT4|RRMF_BACAN RecName: Full=Probable rRNA maturation factor gi|59799092|sp|Q634N8|RRMF_BACCZ RecName: Full=Probable rRNA maturation factor gi|59799112|sp|Q6HDL8|RRMF_BACHK RecName: Full=Probable rRNA maturation factor gi|145558821|sp|A0RIS3|RRMF_BACAH RecName: Full=Probable rRNA maturation factor gi|226706167|sp|B7JN28|RRMF_BACC0 RecName: Full=Probable rRNA maturation factor gi|226706184|sp|B7HPK2|RRMF_BACC7 RecName: Full=Probable rRNA maturation factor gi|254803861|sp|B9IY70|RRMF_BACCQ RecName: Full=Probable rRNA maturation factor gi|254803907|sp|C1ESJ7|RRMF_BACC3 RecName: Full=Probable rRNA maturation factor gi|254803928|sp|C3P8K9|RRMF_BACAA RecName: Full=Probable rRNA maturation factor gi|254803930|sp|C3L5Q6|RRMF_BACAC RecName: Full=Probable rRNA maturation factor gi|30259031|gb|AAP28236.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. Ames] gi|47504972|gb|AAT33648.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. 'Ames Ancestor'] gi|49181125|gb|AAT56501.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. Sterne] gi|49330387|gb|AAT61033.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974670|gb|AAU16220.1| conserved hypothetical protein [Bacillus cereus E33L] gi|118418697|gb|ABK87116.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|164712194|gb|EDR17731.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0488] gi|167513396|gb|EDR88766.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0193] gi|167530127|gb|EDR92862.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0442] gi|170127612|gb|EDS96485.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0389] gi|170668619|gb|EDT19365.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0465] gi|172081565|gb|EDT66637.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0174] gi|190561877|gb|EDV15846.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis Tsiankovskii-I] gi|195992910|gb|EDX56869.1| conserved hypothetical protein TIGR00043 [Bacillus cereus W] gi|196022760|gb|EDX61441.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB108] gi|196029906|gb|EDX68507.1| conserved hypothetical protein TIGR00043 [Bacillus cereus NVH0597-99] gi|206743371|gb|EDZ54809.1| conserved hypothetical protein TIGR00043 [Bacillus cereus H3081.97] gi|217066303|gb|ACJ80553.1| conserved hypothetical protein TIGR00043 [Bacillus cereus AH187] gi|218537495|gb|ACK89893.1| conserved hypothetical protein TIGR00043 [Bacillus cereus AH820] gi|221241806|gb|ACM14516.1| Predicted metal-dependent hydrolase [Bacillus cereus Q1] gi|225787544|gb|ACO27761.1| conserved hypothetical protein TIGR00043 [Bacillus cereus 03BB102] gi|227007063|gb|ACP16806.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. CDC 684] gi|229265844|gb|ACQ47481.1| conserved hypothetical protein TIGR00043 [Bacillus anthracis str. A0248] gi|300377964|gb|ADK06868.1| protein of unknown function UPF0054 [Bacillus cereus biovar anthracis str. CI] gi|324328207|gb|ADY23467.1| metal-binding heat shock protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 156 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|194017716|ref|ZP_03056326.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] gi|194010616|gb|EDW20188.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061] Length = 159 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 15/160 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + E E + FA V + ++ E+S+ + I +N Sbjct: 5 IDLIDETGQVSKEQLEEVEKLLQFAADVLEV--------KDQAEVSVTIVSNEEIHQINK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCS-------SLMLGDIVLAYEIIEIEANVLGKEFENH 125 EYRG D PT+V+SF +LGDI+++ + + +A G F Sbjct: 57 EYRGKDAPTDVISFALEEEGEGEIEIIGADDIPPVLGDIIISVDRTKEQAEEYGHSFMRE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L IHGFLHLLG+DH+ ++D M + IL+D G++ Sbjct: 117 LGFLTIHGFLHLLGFDHMTEEDEKEMFAKQTKILDDYGLS 156 >gi|254804422|ref|YP_003082643.1| hypothetical protein NMO_0420 [Neisseria meningitidis alpha14] gi|254667965|emb|CBA04232.1| conserved hypothetical protein [Neisseria meningitidis alpha14] Length = 251 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA I E F + + + Y ++S Sbjct: 83 RAKQYPFLTLQRQRFHLNFENASSAAGIP----AERDFYRWAWSALKNEY----RRADIS 134 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF C S + GD+++ +++ EA Sbjct: 135 LILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVLKEAA 194 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 195 EQGKTPERHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 249 >gi|313884192|ref|ZP_07817958.1| translation metalloprotein YbeY [Eremococcus coleocola ACS-139-V-Col8] gi|312620639|gb|EFR32062.1| translation metalloprotein YbeY [Eremococcus coleocola ACS-139-V-Col8] Length = 157 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 10/151 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+ + + +V + V L + + +N E+ + + I LN +YR ID+PT+V Sbjct: 7 DDNNFLSQAQVELVQDVIKLAGQKLILPDN-FEVDISIVTNEAIHELNRDYRNIDRPTDV 65 Query: 84 LSFPTAFASSDGCSS---------LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 LSF + D + LGDI++++ I+ +A G FE L L +HGF Sbjct: 66 LSFALEETAEDDPFGQIDMSEELGIFLGDIIISFPKIQEQATEYGHSFERELAFLAVHGF 125 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LHL GYDH M GL+ +L G+ Sbjct: 126 LHLNGYDHQSPDQEKEMFGLQEEVLSAYGLE 156 >gi|163942059|ref|YP_001646943.1| putative metalloprotease [Bacillus weihenstephanensis KBAB4] gi|226701663|sp|A9VHT0|RRMF_BACWK RecName: Full=Probable rRNA maturation factor gi|163864256|gb|ABY45315.1| protein of unknown function UPF0054 [Bacillus weihenstephanensis KBAB4] Length = 156 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EEGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|161869467|ref|YP_001598633.1| hypothetical protein NMCC_0479 [Neisseria meningitidis 053442] gi|161595020|gb|ABX72680.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 211 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA I E F + + + Y ++S Sbjct: 43 RAKKYPFLTLQRQRFHLNFENASSAAGIP----AERDFYRWAWSALKNEY----RRADIS 94 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF S + GD+++ +++ EA Sbjct: 95 LILLDEEEARAYNRDYRGKDYATNVLSFALNEGETLPGQVSEKLYGDLIICPQVVLKEAA 154 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 155 EQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGFPNPYQED 209 >gi|270160107|ref|ZP_06188763.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289165115|ref|YP_003455253.1| metal-dependent hydrolase [Legionella longbeachae NSW150] gi|269988446|gb|EEZ94701.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288858288|emb|CBJ12156.1| putative metal-dependent hydrolase [Legionella longbeachae NSW150] Length = 158 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 12/161 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+Q A + L E L L + + EL++ + L Sbjct: 5 IDIQNATDEYLPISEDQLTHLASLTLR------------DYKKEAELTIRLVTPEEMLQL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N+ YR I+K TNVL+FP + +LGD+++ +++ E+ L K E+H ++ Sbjct: 53 NYTYRKINKTTNVLAFPCTLPTEVQLDYSLLGDVIICPQVLLDESKQLNKTLESHWALIV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 IHG LHLLGYDH+ D DA +M+ +E +L +LG +PY+ + Sbjct: 113 IHGILHLLGYDHIKDDDAAIMQSIEIKLLTELGFANPYDAE 153 >gi|71892097|ref|YP_277827.1| hypothetical protein BPEN_324 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641012|sp|Q492Z0|RRMF_BLOPB RecName: Full=Probable rRNA maturation factor gi|71796203|gb|AAZ40954.1| conserved hypothetical protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 157 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 N +DLQ+A +N L + K + +S + + + +EL++ D Sbjct: 4 NQVIIDLQLACKN-----------LHGLPNRKMFQSWVSAIFSIYKKKIELTVRIVDIKE 52 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + LN+ Y D PTNVLSFP F G S +LGD+VL +IIE E+ +H Sbjct: 53 MHYLNWYYLKKDCPTNVLSFP--FTPPLGMKSPLLGDVVLCRQIIEYESKEKNVPGRSHW 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H+IIHG LHLLGY+H+ DK+A +M+ +ER+IL+ G Sbjct: 111 AHMIIHGSLHLLGYNHIVDKEAILMQRVERNILQKCGY 148 >gi|228954587|ref|ZP_04116612.1| metalloprotease [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071806|ref|ZP_04205021.1| metalloprotease [Bacillus cereus F65185] gi|229081563|ref|ZP_04214061.1| metalloprotease [Bacillus cereus Rock4-2] gi|229180580|ref|ZP_04307922.1| metalloprotease [Bacillus cereus 172560W] gi|229192512|ref|ZP_04319475.1| metalloprotease [Bacillus cereus ATCC 10876] gi|228591089|gb|EEK48945.1| metalloprotease [Bacillus cereus ATCC 10876] gi|228603004|gb|EEK60483.1| metalloprotease [Bacillus cereus 172560W] gi|228701768|gb|EEL54256.1| metalloprotease [Bacillus cereus Rock4-2] gi|228711401|gb|EEL63361.1| metalloprotease [Bacillus cereus F65185] gi|228805244|gb|EEM51838.1| metalloprotease [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 154 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 8/149 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVK--ENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 D I + + + ++ K ++ E+ E+S+ F D+ RI +N +YR D+PT Sbjct: 4 DFIDETEEVKEAYMSLIREVLEKAAQMENIEDGAEVSVTFVDNERIREINRDYRDKDQPT 63 Query: 82 NVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +V+SF MLGD++++ + +A G F+ L L +HGFL Sbjct: 64 DVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFL 123 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH+ ++D M G ++ ILE G+ Sbjct: 124 HLLGYDHMTEEDEKEMFGRQKEILEAFGL 152 >gi|302389485|ref|YP_003825306.1| protein of unknown function UPF0054 [Thermosediminibacter oceani DSM 16646] gi|302200113|gb|ADL07683.1| protein of unknown function UPF0054 [Thermosediminibacter oceani DSM 16646] Length = 162 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 8/139 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E + K V + E VE+S+VF D+ I LN YRG D PT+VLSF S Sbjct: 20 EELVKKIVEFALDFEGVAGE--VEVSVVFVDNDYIRELNRSYRGKDMPTDVLSFSMRETS 77 Query: 93 SDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 +D MLGDIV++ E +A+ G FE + +L++HG LHLLGYDH +++ Sbjct: 78 ADEAFDGNEEVERMLGDIVISLEKAREQADAFGHSFEREVGYLVVHGVLHLLGYDHEEER 137 Query: 147 DACVMEGLERSILEDLGIN 165 D +M E +L + Sbjct: 138 DKKIMREKEEEVLRAFRLT 156 >gi|329924060|ref|ZP_08279323.1| translation metalloprotein YbeY [Paenibacillus sp. HGF5] gi|328940899|gb|EGG37207.1| translation metalloprotein YbeY [Paenibacillus sp. HGF5] Length = 165 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 19/169 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQ+A W +E + E + A + L G E+ L F D I L Sbjct: 1 MSLQLA-----WNNEQEDFQISEELIALLEAILQKAGEAEGVTDGEVDLTFVDDEGIHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLMLGDIVLAYEIIEIEAN 116 N EYRGID+PT+VLSF ++D +LGDI+++ ++++ Sbjct: 56 NREYRGIDRPTDVLSFAMNEITNDELEIIYELEEGEELESVPDVLGDIIISVPRAKLQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E L L +HGFLHLLGYDH D+ M G + ++L ++G+ Sbjct: 116 EYGHSLERELGFLFVHGFLHLLGYDHQDEASEAEMMGKQEAVLAEVGLT 164 >gi|167010863|ref|ZP_02275794.1| hypothetical protein Ftulh_09158 [Francisella tularensis subsp. holarctica FSC200] gi|254369232|ref|ZP_04985244.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|145558840|sp|Q2A3U8|RRMF_FRATH RecName: Full=Probable rRNA maturation factor gi|157122182|gb|EDO66322.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 168 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 44 AEVNLNIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLE 103 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 104 NEAKEQNKEINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 159 >gi|167630510|ref|YP_001681009.1| hypothetical protein HM1_2448 [Heliobacterium modesticaldum Ice1] gi|238687861|sp|B0TAE8|RRMF_HELMI RecName: Full=Probable rRNA maturation factor gi|167593250|gb|ABZ84998.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 166 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 9/162 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L I E + +++ + + + + E+ E+SLV T+ +I L Sbjct: 1 MELYIVDEREGVTKAPEMEESWQLMLEQLAFACLEEVGYPLED-TEISLVLTNDEKIRRL 59 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--------SLMLGDIVLAYEIIEIEANVLGKEF 122 N EYR ID+PT+VLSF D +LGDI+++ E E +A G Sbjct: 60 NAEYRNIDQPTDVLSFAMEEGLDDEADFHFDDPTAGKVLGDIIISVETAERQAQEYGHSL 119 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E + L +HG LHLLGYDH D++ M LE IL + G+ Sbjct: 120 EREMGFLFVHGMLHLLGYDHCDEEQRSRMRALEEKILRNQGL 161 >gi|228923055|ref|ZP_04086348.1| metalloprotease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836688|gb|EEM82036.1| metalloprotease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 154 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 8/149 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVK--ENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 D I + + + ++ K ++ E+ VE+S+ F D+ RI +N +YR D+PT Sbjct: 4 DFIDETEEVKEAYMSLIREVLEKAAQMENIEDGVEVSVTFVDNERIREINRDYRDKDQPT 63 Query: 82 NVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 +V+SF MLGD++++ + +A G F+ L L +HGFL Sbjct: 64 DVISFAMEEMGEGEMEIVGAEMPRMLGDLIISIPRAKEQAEEYGHSFDRELGFLALHGFL 123 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGI 164 HLLGYDH+ ++D M G ++ ILE G+ Sbjct: 124 HLLGYDHMTEEDEKEMFGRQKEILEAFGL 152 >gi|89256242|ref|YP_513604.1| hypothetical protein FTL_0884 [Francisella tularensis subsp. holarctica LVS] gi|89144073|emb|CAJ79323.1| cconserved hypothetical protein, UPF0054 family [Francisella tularensis subsp. holarctica LVS] Length = 173 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 49 AEVNLNIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLE 108 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 109 NEAKEQNKEINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 164 >gi|167626246|ref|YP_001676746.1| hypothetical protein Fphi_0025 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189030202|sp|B0TXS6|RRMF_FRAP2 RecName: Full=Probable rRNA maturation factor gi|167596247|gb|ABZ86245.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 158 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 2/118 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEI 110 + E+++ + I+ +N ++R DKPTN++SF + ++ GDIV+A E+ Sbjct: 36 SQAEVNVSIVSNQEIQQINKQFRHKDKPTNIISFEFEKPEGLPEDIAANFWGDIVIAPEV 95 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++ EA K ++H H+ IHG LHLLGYDH+DD +A ME LE +L +LGI +PY Sbjct: 96 LKKEAKEQNKNLDDHWQHIFIHGLLHLLGYDHIDDIEAEEMENLEIELLAELGIANPY 153 >gi|296504797|ref|YP_003666497.1| putative metalloprotease [Bacillus thuringiensis BMB171] gi|296325849|gb|ADH08777.1| putative metalloprotease [Bacillus thuringiensis BMB171] Length = 156 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|238854660|ref|ZP_04644990.1| putative metalloprotease [Lactobacillus jensenii 269-3] gi|260664397|ref|ZP_05865249.1| metal-dependent hydrolase [Lactobacillus jensenii SJ-7A-US] gi|282932949|ref|ZP_06338346.1| putative metalloprotease [Lactobacillus jensenii 208-1] gi|313472199|ref|ZP_07812691.1| putative metalloprotease [Lactobacillus jensenii 1153] gi|238832450|gb|EEQ24757.1| putative metalloprotease [Lactobacillus jensenii 269-3] gi|239529579|gb|EEQ68580.1| putative metalloprotease [Lactobacillus jensenii 1153] gi|260561462|gb|EEX27434.1| metal-dependent hydrolase [Lactobacillus jensenii SJ-7A-US] gi|281302984|gb|EFA95189.1| putative metalloprotease [Lactobacillus jensenii 208-1] Length = 174 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE + + K + +L+ +K KEN +E+S+ F D + +N +YR Sbjct: 5 DITYNDETNFLADTSRDWRKWIMDLLLMAKKEIGKENNLEMSINFVDEDKSHQINRDYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +I+ A F+ Sbjct: 65 KDRPTDVISFAIEDGEEGVDLASFISDPDFTEDIGDLFMCISVIKRHAEEYETGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH++ +A M G++ +LE+ G+ Sbjct: 125 YTLVHGFLHLNGYDHIEPAEAKEMFGIQGKVLEEYGLP 162 >gi|53804491|ref|YP_113914.1| hypothetical protein MCA1457 [Methylococcus capsulatus str. Bath] gi|59799087|sp|Q608N3|RRMF_METCA RecName: Full=Probable rRNA maturation factor gi|53758252|gb|AAU92543.1| conserved hypothetical protein TIGR00043 [Methylococcus capsulatus str. Bath] Length = 150 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 17/160 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L LQ A +A+ D R E K E+ + D Sbjct: 3 DLTLQRASTSAV-PDSAAFRLWAEAALEK--------------PHAEVVIRIVDREESAA 47 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG PTNVLSFP F +G + +LGD+V+ ++E EA GK E H H+ Sbjct: 48 LNSTYRGKTGPTNVLSFP--FVVPEGVPNDLLGDLVICAPVVEREAAEQGKPVEAHWAHM 105 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HG LHL GYDH+++ +A +ME E +IL LG+ +PY Sbjct: 106 VVHGMLHLQGYDHIEEAEAEIMENREIAILRGLGMENPYR 145 >gi|323703317|ref|ZP_08114967.1| protein of unknown function UPF0054 [Desulfotomaculum nigrificans DSM 574] gi|323531680|gb|EGB21569.1| protein of unknown function UPF0054 [Desulfotomaculum nigrificans DSM 574] Length = 153 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 9/146 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 E +L L E V + +L ++GY + E+ L+F D I++LN EYRGIDKPT+ Sbjct: 13 PVEDNLYQLVEAVV---MESLKAEGYSTE---AEVGLIFVDDGYIQSLNAEYRGIDKPTD 66 Query: 83 VLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 VLSF +LGDIV++ ++ G FE + L HG LHLLG Sbjct: 67 VLSFAMHEGEPMPEEEEAEDLLGDIVISLPTALRQSKEYGHSFEREVAFLTAHGALHLLG 126 Query: 140 YDHVDDKDACVMEGLERSILEDLGIN 165 YDH + + VM E +IL L I Sbjct: 127 YDHQTEAERQVMREKEEAILGRLNIT 152 >gi|218233833|ref|YP_002369110.1| putative metalloprotease [Bacillus cereus B4264] gi|226706180|sp|B7HCS7|RRMF_BACC4 RecName: Full=Probable rRNA maturation factor gi|218161790|gb|ACK61782.1| conserved hypothetical protein TIGR00043 [Bacillus cereus B4264] Length = 156 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|295706636|ref|YP_003599711.1| hypothetical protein BMD_4537 [Bacillus megaterium DSM 319] gi|294804295|gb|ADF41361.1| conserved hypothetical protein [Bacillus megaterium DSM 319] Length = 156 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 8/137 (5%) Query: 37 AKAVSNLISKG--YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 K + L+ Y + E+S+ F D+ RI+ +N +YR ++PT+V+SF D Sbjct: 19 QKELEQLLEAAAIYENLQEDAEVSVTFVDNDRIQEINHQYRHKNQPTDVISFALEEMGED 78 Query: 95 GC------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 +LGDIV++ +A F L L +HGFLHLLGYDH +D Sbjct: 79 EMQIIGDEMPRVLGDIVISIPKAHEQAEEYNHSFMRELGFLTVHGFLHLLGYDHETSEDE 138 Query: 149 CVMEGLERSILEDLGIN 165 M ++ ILE G++ Sbjct: 139 KEMFTRQKDILEQYGLS 155 >gi|149914113|ref|ZP_01902645.1| S-adenosylmethionine synthetase [Roseobacter sp. AzwK-3b] gi|149812397|gb|EDM72228.1| S-adenosylmethionine synthetase [Roseobacter sp. AzwK-3b] Length = 165 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 19/164 (11%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E+ W + L L E A+++L + + E++++ D RI LN ++R Sbjct: 8 EDDRWQT-LDLPGLAETAARAALTHL-----GLAPDAWEIAILACDDARIAALNADFRDK 61 Query: 78 DKPTNVLSFPTAFASSD-------------GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 PTNVLS+P + D + LGDI +A++ + EA GK + Sbjct: 62 PVPTNVLSWPETDLAPDTPGARPEAPAQAGDDAPTPLGDIAIAWDTCQREAEAAGKPLPD 121 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+ HLI+H LHLLGYDH+ D+DA +ME E +IL LG+ DPY Sbjct: 122 HVTHLIVHAVLHLLGYDHIRDQDATLMETTEVAILGKLGVPDPY 165 >gi|228910137|ref|ZP_04073957.1| metalloprotease [Bacillus thuringiensis IBL 200] gi|228849654|gb|EEM94488.1| metalloprotease [Bacillus thuringiensis IBL 200] Length = 154 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E E+S+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 34 EGGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 94 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 152 >gi|30022381|ref|NP_834012.1| putative metalloprotease [Bacillus cereus ATCC 14579] gi|33301866|sp|Q812T1|RRMF_BACCR RecName: Full=Probable rRNA maturation factor gi|29897939|gb|AAP11213.1| hypothetical Metal-Binding Protein [Bacillus cereus ATCC 14579] Length = 156 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 154 >gi|170025228|ref|YP_001721733.1| putative metalloprotease [Yersinia pseudotuberculosis YPIII] gi|238688388|sp|B1JG97|RRMF_YERPY RecName: Full=Probable rRNA maturation factor gi|169751762|gb|ACA69280.1| protein of unknown function UPF0054 [Yersinia pseudotuberculosis YPIII] Length = 157 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 15/164 (9%) Query: 6 VNLPRLDLQIAV-ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQIA ++ E + E V + + + E+++ D Sbjct: 1 MSQVILDLQIACADSQGLPTEGDFQRWLEAVLP------------LFQPVSEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DK TNVLSFP F + +LGD+++ +++E EA K Sbjct: 49 AESHDLNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVVEKEAIEQEKALLA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH+DD +A ME +E I+ LG DPY Sbjct: 107 HWAHMVVHGSLHLLGYDHIDDDEAEEMELIEIEIMHGLGYPDPY 150 >gi|11387300|sp|P57517|RRMF_BUCAI RecName: Full=Probable rRNA maturation factor Length = 155 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 6/133 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F K + ++ K K+NI +++ D I+ LNF YR +KPTN+LSFP F Sbjct: 24 FKKWIQKILCK----KKNINIITIRIVDEWEIKKLNFNYRKKNKPTNILSFP--FNKFIK 77 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + +LGD+VL IIE E+ K E+H H+ IHG LHLLGYDH ++K+A +ME LE Sbjct: 78 INYKLLGDLVLCKNIIEKESLKYNKSLESHWAHITIHGTLHLLGYDHQNNKEADIMERLE 137 Query: 156 RSILEDLGINDPY 168 I+ L P+ Sbjct: 138 NKIMLSLNYKKPH 150 >gi|225175056|ref|ZP_03729052.1| protein of unknown function UPF0054 [Dethiobacter alkaliphilus AHT 1] gi|225169232|gb|EEG78030.1| protein of unknown function UPF0054 [Dethiobacter alkaliphilus AHT 1] Length = 155 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 DE ++ +V A + + + E+SL D I LN +R +D PT+ Sbjct: 6 NDEQNIPLSSGIVSAMEIITKAALVDHNFPSDAEVSLTLCDDATIHELNKTWRSVDAPTD 65 Query: 83 VLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 VLSFP + LMLGD++++ E +A G E +++L +HG LHLLG Sbjct: 66 VLSFPLLGDMTLKVPPGEELMLGDVIISVERARAQAQEFGHSVEREILYLYVHGLLHLLG 125 Query: 140 YDHVDDKDACVMEGLERSILEDLG 163 YDH+++++ M LE +L+++G Sbjct: 126 YDHLEEEEKREMRSLEEKLLKEVG 149 >gi|148244289|ref|YP_001218983.1| hypothetical protein COSY_0125 [Candidatus Vesicomyosocius okutanii HA] gi|166200323|sp|A5CXS1|RRMF_VESOH RecName: Full=Probable rRNA maturation factor gi|146326116|dbj|BAF61259.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 145 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + EL + D I+ LN YR D+PTNVLSFPT +LGD+V+ +I+ Sbjct: 31 KGESELLVRLVDEAEIQNLNKVYRYKDEPTNVLSFPTDL--PIEIDEKILGDVVICIQIV 88 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+ K F NHL+H+ +HG LHLLGYDH+D KDA M LER IL +GIN+PY Sbjct: 89 LKESIEQHKSFNNHLMHMAVHGTLHLLGYDHIDTKDAQNMANLERKILAKIGINNPY 145 >gi|289578131|ref|YP_003476758.1| hypothetical protein Thit_0920 [Thermoanaerobacter italicus Ab9] gi|289527844|gb|ADD02196.1| protein of unknown function UPF0054 [Thermoanaerobacter italicus Ab9] Length = 159 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 12/142 (8%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E + K + ++ + + VE+S+ F D+ I LN YRGIDKPT+VLSFP A Sbjct: 18 EELVKKVIKTVLKVEEVI--DNVEVSVSFVDNEEIRKLNKYYRGIDKPTDVLSFPLAEFE 75 Query: 93 S----------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + +GDIV++ E ++ G FE + +L H LHLLGYDH Sbjct: 76 ETYDKIEKIDQESEEVQPIGDIVISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDH 135 Query: 143 VDDKDACVMEGLERSILEDLGI 164 +++ +M E I+ L I Sbjct: 136 QTEEERKIMRQKEEEIMARLNI 157 >gi|238758021|ref|ZP_04619202.1| metalloprotease [Yersinia aldovae ATCC 35236] gi|238703775|gb|EEP96311.1| metalloprotease [Yersinia aldovae ATCC 35236] Length = 112 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 2/106 (1%) Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D LN YRG DK TNVLSFP F + +LGD+++ +++E EA K Sbjct: 2 DDAESHELNLTYRGKDKSTNVLSFP--FEAPPEIELPLLGDLIICRQVVEQEAIEQEKAL 59 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H H+++HG LHLLGYDH+ D +A ME +E I++ LG DPY Sbjct: 60 LAHWAHMVVHGSLHLLGYDHIVDDEAEEMESIETEIMQSLGYPDPY 105 >gi|254671890|emb|CBA04156.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|308388724|gb|ADO31044.1| hypothetical protein NMBB_0581 [Neisseria meningitidis alpha710] Length = 251 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 112 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 167 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 168 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 227 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 228 IMEAEEIRLMRAAGFPNPYQED 249 >gi|118497656|ref|YP_898706.1| hypothetical protein FTN_1065 [Francisella tularensis subsp. novicida U112] gi|194323628|ref|ZP_03057404.1| conserved hypothetical protein, putative [Francisella tularensis subsp. novicida FTE] gi|208779717|ref|ZP_03247061.1| conserved hypothetical protein [Francisella novicida FTG] gi|145572751|sp|A0Q6T7|RRMF_FRATN RecName: Full=Probable rRNA maturation factor gi|118423562|gb|ABK89952.1| conserved protein of unknown function [Francisella novicida U112] gi|194321992|gb|EDX19474.1| conserved hypothetical protein, putative [Francisella tularensis subsp. novicida FTE] gi|208744172|gb|EDZ90472.1| conserved hypothetical protein [Francisella novicida FTG] Length = 162 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 38 AEVNLNIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLE 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 98 NEAKEQNKELNDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|291484979|dbj|BAI86054.1| putative metalloprotease [Bacillus subtilis subsp. natto BEST195] Length = 157 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 18/161 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETL 70 + I E +E K V NL+ + ++ E+S+ + I + Sbjct: 5 IDIVDETGSVSEE----------LLKEVENLLQFAAEREGVQDQAEVSVTIVSNDDIHQI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N EYRG D PT+V+SF +LGDI+++ + +A F+ Sbjct: 55 NKEYRGKDAPTDVISFALEEEGEGEIEIVGAEMPPVLGDIIISADRTREQAEEYNHSFKR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 115 ELGFLAVHGFLHLLGYDHMTKEEEEEMFTKQKELLDAYGLK 155 >gi|59799019|sp|Q63X65|RRMF_BURPS RecName: Full=Probable rRNA maturation factor Length = 184 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 35 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 86 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 87 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 142 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 143 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 184 >gi|261405613|ref|YP_003241854.1| hypothetical protein GYMC10_1764 [Paenibacillus sp. Y412MC10] gi|261282076|gb|ACX64047.1| protein of unknown function UPF0054 [Paenibacillus sp. Y412MC10] Length = 165 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 19/169 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQ+A W +E + E + A + L G E+ L F D I L Sbjct: 1 MSLQLA-----WNNEQEDFQIGEELIALLEAILQKAGEAEGVTDGEVDLTFVDDEGIHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLMLGDIVLAYEIIEIEAN 116 N EYRGID+PT+VLSF ++D +LGDI+++ ++++ Sbjct: 56 NREYRGIDRPTDVLSFAMNEITNDELEIIYELEEGEELESVPDVLGDIIISVPRAKLQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E L L +HGFLHLLGYDH D+ M G + ++L ++G+ Sbjct: 116 EYGHSLERELGFLFVHGFLHLLGYDHQDEASEAEMMGKQEAVLAEVGLT 164 >gi|217972291|ref|YP_002357042.1| putative metalloprotease [Shewanella baltica OS223] gi|254799938|sp|B8E6K8|RRMF_SHEB2 RecName: Full=Probable rRNA maturation factor gi|217497426|gb|ACK45619.1| protein of unknown function UPF0054 [Shewanella baltica OS223] Length = 153 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + +++A D + + FA + I + EL++ DS + L Sbjct: 3 LDLALDIQHATTCDWLP----TDEQFALWATTAIGNSM----DEAELTIRIVDSRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICAAVVENEAREQQKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|228960568|ref|ZP_04122217.1| metalloprotease [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048022|ref|ZP_04193598.1| metalloprotease [Bacillus cereus AH676] gi|229111776|ref|ZP_04241324.1| metalloprotease [Bacillus cereus Rock1-15] gi|229129580|ref|ZP_04258550.1| metalloprotease [Bacillus cereus BDRD-Cer4] gi|229146888|ref|ZP_04275253.1| metalloprotease [Bacillus cereus BDRD-ST24] gi|229152503|ref|ZP_04280695.1| metalloprotease [Bacillus cereus m1550] gi|228631111|gb|EEK87748.1| metalloprotease [Bacillus cereus m1550] gi|228636716|gb|EEK93181.1| metalloprotease [Bacillus cereus BDRD-ST24] gi|228653897|gb|EEL09765.1| metalloprotease [Bacillus cereus BDRD-Cer4] gi|228671770|gb|EEL27066.1| metalloprotease [Bacillus cereus Rock1-15] gi|228723479|gb|EEL74848.1| metalloprotease [Bacillus cereus AH676] gi|228799168|gb|EEM46136.1| metalloprotease [Bacillus thuringiensis serovar pakistani str. T13001] Length = 154 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 34 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 94 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEILEAFGL 152 >gi|313903261|ref|ZP_07836653.1| protein of unknown function UPF0054 [Thermaerobacter subterraneus DSM 13965] gi|313466349|gb|EFR61871.1| protein of unknown function UPF0054 [Thermaerobacter subterraneus DSM 13965] Length = 177 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 17/159 (10%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + V L++ VE+SL F D I+ LN YRG D PT+V Sbjct: 21 DRLAVPPHWDRLLPAVVGRLLAAEGLGVP--VEISLTFVDDVAIQELNRRYRGKDAPTDV 78 Query: 84 LSFPTAFASS---------------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LSFP G + LGD+V++ E +A G + + + Sbjct: 79 LSFPQLEPDEVAALVRAPAVPAQVAPGPEPVPLGDVVISLERAAAQARDYGHSLDREVGY 138 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 L+ HG LHLLGYDH D + M + L D G++ P Sbjct: 139 LLAHGVLHLLGYDHPDAERERRMHEKAEAALADCGLSRP 177 >gi|30250260|ref|NP_842330.1| hypothetical protein NE2333 [Nitrosomonas europaea ATCC 19718] gi|46577433|sp|Q82SI9|RRMF_NITEU RecName: Full=Probable rRNA maturation factor gi|30181055|emb|CAD86245.1| Uncharacterized protein family UPF0054 [Nitrosomonas europaea ATCC 19718] Length = 164 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 79/168 (47%), Gaps = 15/168 (8%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 ++ V P + ++ + D+ + +F K V +SK E+ + Sbjct: 8 LTKNPVESPDHEQELVLTVQYVADKTDIPN--RRLFRKWVKAALSK-------PAEVVIR 58 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D E LN ++RG TNVL+F +LGDIVL +I EA GK Sbjct: 59 IVDRQEGEILNRDFRGKSSATNVLTFVYDD------DVPLLGDIVLCAPVICNEAQQQGK 112 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + H HL IHG LHL GYDH+ D+DA VME LE I+ LG DPY Sbjct: 113 DLTAHYAHLTIHGILHLQGYDHIRDEDAVVMESLETEIITRLGYPDPY 160 >gi|332799066|ref|YP_004460565.1| metalloprotease ybeY [Tepidanaerobacter sp. Re1] gi|332696801|gb|AEE91258.1| metalloprotease ybeY [Tepidanaerobacter sp. Re1] Length = 162 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+I + E + KAV+ IS + +E+S+ D I+ LN +YR +D+PT+V Sbjct: 13 DKIDVTQKLEELINKAVNTAISVEKVSGD--LEVSIALVDDEYIQKLNRQYRSLDEPTDV 70 Query: 84 LSFPT------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 LSF S + +LGD+V++ E + +A G FE + L++HG LHL Sbjct: 71 LSFAMRETVFEEGGSFEFQEEELLGDVVISLERAKEQAVEYGHSFEREVGFLVVHGILHL 130 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH ++ VM E IL+ + + Sbjct: 131 LGYDHEVGEEKVVMRQREEEILKAIDLT 158 >gi|296333310|ref|ZP_06875763.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675185|ref|YP_003866857.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii str. W23] gi|296149508|gb|EFG90404.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413429|gb|ADM38548.1| putative metalloprotease [Bacillus subtilis subsp. spizizenii str. W23] Length = 157 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETL 70 + I E +E+ K V NL+ + +N E+S+ + I+ + Sbjct: 5 IDIVDETGSVSEEM----------LKEVENLLQFAAEREGVQNQAEVSVTIVTNEDIQQI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD------GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N EYRG D PT+V+SF +LGDI+++ + +A F+ Sbjct: 55 NKEYRGKDTPTDVISFALEEEGEGEVEIVGAEMPPVLGDIIISADRTREQAEEYNHSFKR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 115 ELGFLAVHGFLHLLGYDHMTKEEEEEMFTKQKDLLDAYGLK 155 >gi|241668688|ref|ZP_04756266.1| hypothetical protein FphipA2_07970 [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 158 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 2/118 (1%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEI 110 + E++L + I+ +N ++R DKPTN++SF + + GDIV+A E+ Sbjct: 36 SQAEVNLSIVSNQEIQQINKQFRHKDKPTNIISFEFEKPEGLPEDIADNFWGDIVIAPEV 95 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++ EA K ++H H+ IHG LHLLGYDH+DD +A ME LE +L +LGI +PY Sbjct: 96 LKKEAKEQNKNLDDHWQHIFIHGLLHLLGYDHIDDIEAEEMENLEIELLAELGIANPY 153 >gi|115314700|ref|YP_763423.1| hypothetical protein FTH_0870 [Francisella tularensis subsp. holarctica OSU18] gi|156502302|ref|YP_001428367.1| hypothetical protein FTA_0935 [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953584|ref|ZP_06558205.1| hypothetical protein FtulhU_04454 [Francisella tularensis subsp. holarctica URFT1] gi|295313085|ref|ZP_06803775.1| hypothetical protein FtulhU_04439 [Francisella tularensis subsp. holarctica URFT1] gi|122325277|sp|Q0BM98|RRMF_FRATO RecName: Full=Probable rRNA maturation factor gi|171769928|sp|A7NBQ8|RRMF_FRATF RecName: Full=Probable rRNA maturation factor gi|115129599|gb|ABI82786.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|156252905|gb|ABU61411.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 162 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 38 AEVNLNIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLE 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGYDH DD++A VME LE +L LGI +PY Sbjct: 98 NEAKEQNKEINDHWQHIFIHGLLHLLGYDHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|315282362|ref|ZP_07870789.1| putative metalloprotease [Listeria marthii FSL S4-120] gi|313613994|gb|EFR87711.1| putative metalloprotease [Listeria marthii FSL S4-120] Length = 161 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + E + DE + L E + + GY E ELSL FT + I + Sbjct: 4 LEIDLLDETSKLPDED--KELVENILQ------FAAGYLKIEQGTELSLTFTTNEGIREI 55 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N EYR D+ T+V+SF D + MLGDI+++ E E +A G Sbjct: 56 NREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGH 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HG LHLLGYDH++ + VM GL++ +L+ G+ Sbjct: 116 TKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKEVLDAYGLE 160 >gi|149186038|ref|ZP_01864352.1| predicted metal-dependent hydrolase [Erythrobacter sp. SD-21] gi|148830069|gb|EDL48506.1| predicted metal-dependent hydrolase [Erythrobacter sp. SD-21] Length = 161 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 68/164 (41%), Positives = 87/164 (53%), Gaps = 12/164 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL I ++ W D EV+ KA + + + + SL+FT ++ L Sbjct: 1 MDLDIEID--GWPDAED----WEVISQKAYEAIAQVEFALAHPRLTTSLLFTSEEQVHEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 N E+RG DKPTNVLSFP A MLGDI LA+E + EA+ G +H Sbjct: 55 NKEWRGKDKPTNVLSFPMLERVDLIALEADGPPEMLGDIALAFETCQREADEKGVSVRDH 114 Query: 126 LVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 HL+IHGFLHL G+DHVD D+ A ME LE L LGI DPY Sbjct: 115 TAHLLIHGFLHLAGHDHVDSDEQAAAMEKLEIEALAKLGIADPY 158 >gi|294501289|ref|YP_003564989.1| hypothetical protein BMQ_4551 [Bacillus megaterium QM B1551] gi|294351226|gb|ADE71555.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 156 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 8/137 (5%) Query: 37 AKAVSNLISKG--YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 K + L+ Y + E+S+ F D+ RI+ +N +YR ++PT+V+SF D Sbjct: 19 QKELEKLLEAAAIYENLQENAEVSVTFVDNDRIQEINHQYRHKNQPTDVISFALEEMGED 78 Query: 95 GCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 +LGDIV++ +A F L L +HGFLHLLGYDH +D Sbjct: 79 EMQIIGDELPRVLGDIVISIPKAHEQAEEYNHSFMRELGFLTVHGFLHLLGYDHETSEDE 138 Query: 149 CVMEGLERSILEDLGIN 165 M ++ ILE G++ Sbjct: 139 KEMFTRQKDILEQYGLS 155 >gi|110681055|ref|YP_684062.1| hypothetical protein RD1_3919 [Roseobacter denitrificans OCh 114] gi|122972520|sp|Q161G7|RRMF_ROSDO RecName: Full=Probable rRNA maturation factor gi|109457171|gb|ABG33376.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 166 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 18/172 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ I +E+ W + V + V IS + E+S + D RI L Sbjct: 1 MDIDILIEDDRWA------AMDLDVLVRDVLRAISDTLTLDLAAAEVSYLACDDARIALL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------------DGCSSLMLGDIVLAYEIIEIEANVL 118 N ++R TNVLS+P A + D +L LGD+ +AYE E EA L Sbjct: 55 NADFREKATATNVLSWPAADLAPVVAGAVPTTPTVDVTGALTLGDVAIAYETCEREAADL 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 GK H+ HLI+HG LHLLGYDH+ D DA +M+G+E IL +G +DPY V Sbjct: 115 GKPLAEHVTHLIVHGTLHLLGYDHIRDSDAALMQGVEAKILGKMGFDDPYMV 166 >gi|187931464|ref|YP_001891448.1| hypothetical protein FTM_0691 [Francisella tularensis subsp. mediasiatica FSC147] gi|238691552|sp|B2SG11|RRMF_FRATM RecName: Full=Probable rRNA maturation factor gi|187712373|gb|ACD30670.1| conserved hypothetical protein, putative [Francisella tularensis subsp. mediasiatica FSC147] Length = 162 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 38 AEVNLNIVSNDEIQQINKQFRNKDKPTNIISFEFEKPQGLPDDIANDFLGDIVIAPAVLE 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGYDH D++A VME LE +L LGI +PY Sbjct: 98 NEAKEQNKELNDHWQHIFIHGLLHLLGYDHQGDQEAEVMENLEIQLLAQLGIANPY 153 >gi|325849563|ref|ZP_08170801.1| translation metalloprotein YbeY [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480044|gb|EGC83121.1| translation metalloprotein YbeY [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 154 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 12/158 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ ++N D + L+ E V + + K V E E+SL F D +I LN Sbjct: 1 MKLIIDNTTNED-LTLQKDLEKVIKEVL-----KVENVDEKKCEISLSFVDEIKIRDLNK 54 Query: 73 EYRGIDKPTNVLSFPTAFASSD------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 ++RGID+ T+VLSFP ++ LMLGD+V+ ++ +A LG FE + Sbjct: 55 DFRGIDRVTDVLSFPIEDFFNEDRKTLLEKPYLMLGDVVICTDVARKQAKELGHSFEREI 114 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++L H LHLLGYDH++D D +M E+ ++++LG+ Sbjct: 115 MYLTCHSILHLLGYDHMEDDDKKIMRSKEKQVMKNLGV 152 >gi|59799018|sp|Q62ML1|RRMF_BURMA RecName: Full=Probable rRNA maturation factor gi|145558842|sp|Q3JVV3|RRMF_BURP1 RecName: Full=Probable rRNA maturation factor Length = 184 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 13/162 (8%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F ++ F + Sbjct: 35 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIFSDTQF---TVRFVGADEGR 86 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 87 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 142 Query: 129 LIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 143 LLVHGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 184 >gi|297544406|ref|YP_003676708.1| hypothetical protein Tmath_0963 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842181|gb|ADH60697.1| protein of unknown function UPF0054 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 159 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 12/142 (8%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E + K + ++ + + VE+S+ F D+ + LN YRGIDKPT+VLSFP A Sbjct: 18 EELIEKVIKTVLEVEEVI--DNVEVSVSFVDNEEMRKLNKYYRGIDKPTDVLSFPLAEFE 75 Query: 93 S----------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 + +GDIV++ E ++ G FE + +L H LHLLGYDH Sbjct: 76 ETYDKIEKIDQESEEVQPIGDIVISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDH 135 Query: 143 VDDKDACVMEGLERSILEDLGI 164 +++ +M E I+ L I Sbjct: 136 QTEEERKIMRQKEEEIMARLNI 157 >gi|126175463|ref|YP_001051612.1| putative metalloprotease [Shewanella baltica OS155] gi|166229097|sp|A3D7N0|RRMF_SHEB5 RecName: Full=Probable rRNA maturation factor gi|125998668|gb|ABN62743.1| protein of unknown function UPF0054 [Shewanella baltica OS155] Length = 153 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 88/159 (55%), Gaps = 10/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LDL + +++A D + + FA + I + EL++ D+ + L Sbjct: 3 LDLALDIQHATTCDWLP----TDEQFALWATTAIGNSM----DEAELTIRIVDTRESQML 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YRG DKPTNVLSFP F + +LGD+V+ ++E EA K E H H++ Sbjct: 55 NSTYRGKDKPTNVLSFP--FEAPPEIELPLLGDLVICAAVVENEAREQQKTLEAHWAHMV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +HG LHLLGYDH++D++A ME LE ++E LG DPY+ Sbjct: 113 VHGCLHLLGYDHIEDEEAEEMESLETQLIEGLGFTDPYK 151 >gi|33600341|ref|NP_887901.1| putative metalloprotease [Bordetella bronchiseptica RB50] gi|46577415|sp|Q7WMN5|RRMF_BORBR RecName: Full=Probable rRNA maturation factor gi|145559541|sp|Q7VZ88|RRMF_BORPE RecName: Full=Probable rRNA maturation factor gi|33567940|emb|CAE31853.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 157 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 45/113 (39%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL L LN E+RG D TNVL+F G + GDIV+ ++ EA Sbjct: 46 ELGLRLVGLAEGRRLNREFRGRDYATNVLTFEY----GTGPDGVARGDIVVCVPVLAREA 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H HL +HG LH LGYDH+ +A ME LE ++L +GI DPY Sbjct: 102 REQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPY 154 >gi|114331764|ref|YP_747986.1| hypothetical protein Neut_1787 [Nitrosomonas eutropha C91] gi|122313486|sp|Q0AF61|RRMF_NITEC RecName: Full=Probable rRNA maturation factor gi|114308778|gb|ABI60021.1| protein of unknown function UPF0054 [Nitrosomonas eutropha C91] Length = 141 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 68/136 (50%), Gaps = 13/136 (9%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 +F K V ++K E+ + E LN ++RG D TNVL+F + Sbjct: 15 RQLFRKWVGAALNK-------PAEIVIRIVGMQEGEVLNRKFRGKDSATNVLTFVYSD-- 65 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +LGDIVL +I EA K+ H HLI+HG LHL GYDH+ D+DA VME Sbjct: 66 ----DVPLLGDIVLCAPVISREAEQQNKDLVAHYAHLIVHGVLHLQGYDHISDEDAVVME 121 Query: 153 GLERSILEDLGINDPY 168 LE I+ L DPY Sbjct: 122 SLETKIITRLNYPDPY 137 >gi|29653905|ref|NP_819597.1| hypothetical protein CBU_0567 [Coxiella burnetii RSA 493] gi|153208801|ref|ZP_01947028.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii 'MSU Goat Q177'] gi|154706495|ref|YP_001424840.1| hypothetical metal-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161830561|ref|YP_001596496.1| hypothetical protein COXBURSA331_A0681 [Coxiella burnetii RSA 331] gi|165919083|ref|ZP_02219169.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii RSA 334] gi|212212943|ref|YP_002303879.1| hypothetical metal-binding protein [Coxiella burnetii CbuG_Q212] gi|212218812|ref|YP_002305599.1| hypothetical metal-binding protein [Coxiella burnetii CbuK_Q154] gi|46577440|sp|Q83DX5|RRMF_COXBU RecName: Full=Probable rRNA maturation factor gi|189038728|sp|A9KCP4|RRMF_COXBN RecName: Full=Probable rRNA maturation factor gi|189040577|sp|A9NC56|RRMF_COXBR RecName: Full=Probable rRNA maturation factor gi|226701644|sp|B6J855|RRMF_COXB1 RecName: Full=Probable rRNA maturation factor gi|226701649|sp|B6J1A6|RRMF_COXB2 RecName: Full=Probable rRNA maturation factor gi|29541168|gb|AAO90111.1| hypothetical metal-binding protein [Coxiella burnetii RSA 493] gi|120575707|gb|EAX32331.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii 'MSU Goat Q177'] gi|154355781|gb|ABS77243.1| hypothetical metal-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161762428|gb|ABX78070.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii RSA 331] gi|165917217|gb|EDR35821.1| conserved hypothetical protein TIGR00043 [Coxiella burnetii RSA 334] gi|212011353|gb|ACJ18734.1| hypothetical metal-binding protein [Coxiella burnetii CbuG_Q212] gi|212013074|gb|ACJ20454.1| hypothetical metal-binding protein [Coxiella burnetii CbuK_Q154] Length = 152 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 77/159 (48%), Gaps = 11/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+Q A + ++ E V++ +N L++ F D L Sbjct: 4 IDVQHATQFEDLPSLSNIEQWVETALQFIVTD---------KNKSALTIRFIDKEESTEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N YR PTNVLSFP G S GD+ + ++ EA+ K E H HLI Sbjct: 55 NEHYRHKKGPTNVLSFP--DEPIPGFPSESFGDLAICAPLVAEEAHAQHKTTEAHFAHLI 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HGFLHLLGYDHV+++DA ME LE IL LG +PYE Sbjct: 113 THGFLHLLGYDHVENEDAEEMENLEIKILSQLGFENPYE 151 >gi|116872896|ref|YP_849677.1| putative metalloprotease [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466300|sp|A0AIR6|RRMF_LISW6 RecName: Full=Probable rRNA maturation factor gi|116741774|emb|CAK20898.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 161 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 18/168 (10%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +P L++ + E DE + L E + + GY + ELSL FT + I Sbjct: 1 MPVLEIDLLDETNKLLDED--KQLVENILQ------FAAGYLKIDEGTELSLTFTTNEGI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANV 117 +N EYR D+ T+V+SF A D + MLGDI+++ E E +A Sbjct: 53 REINREYRNKDQATDVISFALEEMGEGETEIDWADFDLETPKMLGDIIISTEKAEEQAKD 112 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 113 YGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE 160 >gi|221310456|ref|ZP_03592303.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. 168] gi|221314779|ref|ZP_03596584.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319702|ref|ZP_03600996.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. JH642] gi|221323979|ref|ZP_03605273.1| putative metalloprotease [Bacillus subtilis subsp. subtilis str. SMY] gi|255767580|ref|NP_390410.2| metalloprotease [Bacillus subtilis subsp. subtilis str. 168] gi|321312015|ref|YP_004204302.1| metal-binding heat shock protein [Bacillus subtilis BSn5] gi|251757429|sp|P46347|RRMF_BACSU RecName: Full=Probable rRNA maturation factor gi|225185208|emb|CAB14461.2| putative metal-dependent hydrolase [Bacillus subtilis subsp. subtilis str. 168] gi|320018289|gb|ADV93275.1| metal-binding heat shock protein [Bacillus subtilis BSn5] Length = 157 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 18/161 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETL 70 + I E +E+ K V NL+ + ++ E+S+ + I + Sbjct: 5 IDIVDETGSVSEEM----------LKEVENLLQFAAEREGVQDQAEVSVTIVSNDDIHQI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N EYRG D PT+V+SF +LGDI+++ + +A F+ Sbjct: 55 NKEYRGKDAPTDVISFALEEEGEGEIEIVGAEMPPVLGDIIISADRTREQAEEYNHSFKR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 115 ELGFLAVHGFLHLLGYDHMTKEEEEEMFTKQKELLDAYGLK 155 >gi|33592182|ref|NP_879826.1| putative metalloprotease [Bordetella pertussis Tohama I] gi|33571827|emb|CAE41339.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332381599|gb|AEE66446.1| putative metalloprotease [Bordetella pertussis CS] Length = 149 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 45/113 (39%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL L LN E+RG D TNVL+F G + GDIV+ ++ EA Sbjct: 38 ELGLRLVGLAEGRRLNREFRGRDYATNVLTFEY----GTGPDGVARGDIVVCVPVLAREA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H HL +HG LH LGYDH+ +A ME LE ++L +GI DPY Sbjct: 94 REQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPY 146 >gi|83589459|ref|YP_429468.1| hypothetical protein Moth_0595 [Moorella thermoacetica ATCC 39073] gi|123524940|sp|Q2RKW4|RRMF_MOOTA RecName: Full=Probable rRNA maturation factor gi|83572373|gb|ABC18925.1| Protein of unknown function UPF0054 [Moorella thermoacetica ATCC 39073] Length = 156 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 6/113 (5%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEII 111 SL D I+ LN YRG+D PT+VLSF D +LGDI+++ Sbjct: 42 SLTLVDDAAIKELNRTYRGVDAPTDVLSFALEEKGPDEPAYADPGGDKLLGDIIISVPTA 101 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G L L +HGFLHLLGYDH A ME + +IL +G+ Sbjct: 102 VRQAGEYGHSLARELAFLAVHGFLHLLGYDHDTAAGAADMEARQEAILAGVGL 154 >gi|70726347|ref|YP_253261.1| hypothetical protein SH1346 [Staphylococcus haemolyticus JCSC1435] gi|123660334|sp|Q4L6S0|RRMF_STAHJ RecName: Full=Probable rRNA maturation factor gi|68447071|dbj|BAE04655.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 153 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLML 101 +K ELS+ F D + I+ +N YR DK T+V+SF + +L Sbjct: 28 AKEQEQINEDAELSVTFVDKNEIQEINKTYRDKDKVTDVISFALEEDEPEIVGLDMPRVL 87 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI++ + E +A+ G FE L L +HGFLHLLGYDH++++D VM + +IL Sbjct: 88 GDIIICTNVAEEQADSFGHSFERELGFLALHGFLHLLGYDHMNEEDEKVMFSRQDTILNA 147 Query: 162 LGIN 165 G+ Sbjct: 148 YGLT 151 >gi|16800570|ref|NP_470838.1| putative metalloprotease [Listeria innocua Clip11262] gi|26006924|sp|Q92BP5|RRMF_LISIN RecName: Full=Probable rRNA maturation factor gi|16413975|emb|CAC96733.1| lin1502 [Listeria innocua Clip11262] gi|313618896|gb|EFR90761.1| putative metalloprotease [Listeria innocua FSL S4-378] gi|313623746|gb|EFR93888.1| putative metalloprotease [Listeria innocua FSL J1-023] Length = 161 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + E DE + L E + + GY E ELSL FT + I+ + Sbjct: 4 LEIDLLDETNNLPDED--KQLVENILQ------FAAGYLKIEEGTELSLTFTTNEGIQEI 55 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N EYR D+ T+V+SF D + MLGDI+++ E E +A G Sbjct: 56 NREYRNKDQATDVISFALEEMGDGETEIDWGDFDLETPRMLGDIIISTEKAEEQAKDYGH 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HG LHLLGYDH++ + VM GL++ +L+ G+ Sbjct: 116 TKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKEVLDAYGLE 160 >gi|226311650|ref|YP_002771544.1| hypothetical protein BBR47_20630 [Brevibacillus brevis NBRC 100599] gi|254801535|sp|C0ZB81|RRMF_BREBN RecName: Full=Probable rRNA maturation factor gi|226094598|dbj|BAH43040.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 159 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 20/167 (11%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L ++I E DE +L+ L A ++E E+ + ++ RI Sbjct: 1 MLSVEILHEEIEPIDE-NLQNLLVRCLEAAAK--------LEEVQGEVVVTLVNNERIHE 51 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVL 118 LN +YRG+D+PT+VLSF MLGDI+++ +A Sbjct: 52 LNRDYRGVDRPTDVLSFAMNEPGEGEMEIFIDEDEASEFPNMLGDIIISVPKAHEQAEDY 111 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G FE L L +HGFLHLLGYDH ++ M + +LE++G+ Sbjct: 112 GHSFERELGFLTVHGFLHLLGYDHGTPEEEKEMFSRQEKVLEEIGLT 158 >gi|159039362|ref|YP_001538615.1| putative metalloprotease [Salinispora arenicola CNS-205] gi|157918197|gb|ABV99624.1| protein of unknown function UPF0054 [Salinispora arenicola CNS-205] Length = 170 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 19/170 (11%) Query: 2 SVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVF 61 + +L ++IA E+ + D + V A A L G + ELS++ Sbjct: 5 AANYREGSQLSIEIANESGVDID-------TDAVLAVARHALDEMGV---NQLAELSVLL 54 Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIE 112 D + LN + G D PT+VL+FP S D G +LGDIVL E+ Sbjct: 55 VDIDYMAELNHRWMGGDGPTDVLAFPMDEGSVDHGPGESAVAGTEPALLGDIVLCPEVAA 114 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +A G + L L +HG LHLLGYDH + + M L+ +L Sbjct: 115 KQAATAGHSAADELHLLTVHGVLHLLGYDHAEPDEEREMFALQARLLAGW 164 >gi|187477342|ref|YP_785366.1| putative metalloprotease [Bordetella avium 197N] gi|123514086|sp|Q2KWD6|RRMF_BORA1 RecName: Full=Probable rRNA maturation factor gi|115421928|emb|CAJ48448.1| conserved hypothetical protein [Bordetella avium 197N] Length = 161 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 58/116 (50%), Gaps = 4/116 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 EL++ LN ++RG D TNVL+F GDIV+ ++ Sbjct: 46 QAAELNVRLVGQAEGRRLNADFRGRDYATNVLTFEYGVDPL----GTARGDIVICAPVLA 101 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K F +H HL IHG LH LGYDH+ ++A ME LE IL +GI DPY Sbjct: 102 REAREQKKSFVDHATHLTIHGVLHALGYDHIKVREAKRMEALETRILARMGIADPY 157 >gi|326942085|gb|AEA17981.1| putative metalloprotease [Bacillus thuringiensis serovar chinensis CT-43] Length = 156 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDENEMFGRQKEILEAFGL 154 >gi|205374159|ref|ZP_03226959.1| putative metalloprotease [Bacillus coahuilensis m4-4] Length = 158 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 7/148 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE ++ + + + +K V + E+SL F + RI+ +N EYR D+PT+V Sbjct: 10 DETKEVAQDDLELVQEILHFAAKKEGVTQGS-EVSLTFVTNERIQQVNREYRDKDQPTDV 68 Query: 84 LSFPTAFASSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 +SF + +LGDI+++ E +A+ G F+ L L +HGFLHL Sbjct: 69 ISFALEEMDENEIRIIGEGIPRVLGDIIISVERTREQASEYGHSFQRELGFLALHGFLHL 128 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH++++D VM ++ IL++ G+ Sbjct: 129 LGYDHINEQDEKVMFQRQKDILDEFGLK 156 >gi|325127628|gb|EGC50544.1| hypothetical protein TIGR00043 [Neisseria meningitidis N1568] Length = 171 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGY----RRADISLILLDEEAARDYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 ETLPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|163791431|ref|ZP_02185840.1| hypothetical protein CAT7_03124 [Carnobacterium sp. AT7] gi|159873295|gb|EDP67390.1| hypothetical protein CAT7_03124 [Carnobacterium sp. AT7] Length = 158 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----------FASSD 94 + + E+S+ F D+ I+ +N YRG D+PT+V+SF F D Sbjct: 27 AGKHIELPKDTEMSVTFVDNENIQKINKTYRGKDQPTDVISFAIEDEVEDELMINFDELD 86 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 +GDI+++ + +A F+ L L +HGFLHL GYDH++ +D M GL Sbjct: 87 EPMPRNIGDIIISVDKTASQAKEYNHSFDRELGFLALHGFLHLNGYDHMNPEDEKEMFGL 146 Query: 155 ERSILEDLGIN 165 ++ ILE G+ Sbjct: 147 QKEILEAYGLK 157 >gi|259500585|ref|ZP_05743487.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] gi|302191276|ref|ZP_07267530.1| hypothetical protein LineA_04632 [Lactobacillus iners AB-1] gi|259167969|gb|EEW52464.1| conserved hypothetical protein [Lactobacillus iners DSM 13335] Length = 175 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + LI +K K N E+S+ F D ++I +N YRG Sbjct: 5 DISFNDEVDFLSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVDINKIHEINKNYRG 64 Query: 77 IDKPTNVLSFPTAFASSDGCSSLML---------GDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF + + + + GD+ + E++E A F Sbjct: 65 KDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 125 YTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLP 162 >gi|225018653|ref|ZP_03707845.1| hypothetical protein CLOSTMETH_02603 [Clostridium methylpentosum DSM 5476] gi|224948561|gb|EEG29770.1| hypothetical protein CLOSTMETH_02603 [Clostridium methylpentosum DSM 5476] Length = 168 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 7/145 (4%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + ++ + +++ F ++ E+S+ F D+ I+ LN EYR D PT+VLS Sbjct: 15 VKIPSGIRLLVRRCCHAVLNHEGFSQD--AEVSVSFVDNADIQKLNSEYRQKDAPTDVLS 72 Query: 86 FPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP F ++ + +LGDIVL+ E +A + G + + +L +H HLLGYD Sbjct: 73 FPLGENGEFDLNEETGAAVLGDIVLSMEKAYEQAEIYGHSLQREVAYLTVHSMFHLLGYD 132 Query: 142 HVDDK-DACVMEGLERSILEDLGIN 165 H +A M E ++L LG+ Sbjct: 133 HEQGGLEAVRMREKEEAVLTSLGLP 157 >gi|54023400|ref|YP_117642.1| putative metalloprotease [Nocardia farcinica IFM 10152] gi|59799084|sp|Q5YZW3|RRMF_NOCFA RecName: Full=Probable rRNA maturation factor gi|54014908|dbj|BAD56278.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 184 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + E L ++ V + + ELS+V D + L Sbjct: 1 MSIEIANESGIDVPEEDLVSVARFVIGRMDVH----------PAAELSMVLVDLDTMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP S MLGDIVL E +A+ G E+ Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDSPEPGPSMLGDIVLCPEFAADQAHKAGHSLEH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + ++ M L+ +LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEKEMFALQARLLEEW 148 >gi|218666487|ref|YP_002425087.1| conserved hypothetical protein TIGR00043 [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518700|gb|ACK79286.1| conserved hypothetical protein TIGR00043 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 158 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 77/154 (50%), Gaps = 2/154 (1%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 +AV++ + + R +A+S S + I ELSL F + LN Y Sbjct: 1 MAVDDVVAAMPLPPRGEVRRSILQALSA-PSARVSADDRIRELSLTFVGDAEMAALNEGY 59 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R PTN LSFP A +LGDIV+A ++ EA GK +H HL+IH Sbjct: 60 RHKAAPTNCLSFPQD-ALPVLFRRDLLGDIVIAPAVVGREAAAQGKSLRDHYRHLLIHST 118 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LHLLGYDH DA ME LE +L ++G+ DPY Sbjct: 119 LHLLGYDHELAADAQEMEALETRLLAEMGVADPY 152 >gi|228941468|ref|ZP_04104019.1| metalloprotease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974399|ref|ZP_04134968.1| metalloprotease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980992|ref|ZP_04141295.1| metalloprotease [Bacillus thuringiensis Bt407] gi|228778783|gb|EEM27047.1| metalloprotease [Bacillus thuringiensis Bt407] gi|228785449|gb|EEM33459.1| metalloprotease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818249|gb|EEM64323.1| metalloprotease [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 154 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIV 105 E+ E+S+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 34 EDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLI 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ ILE G+ Sbjct: 94 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDENEMFGRQKEILEAFGL 152 >gi|150390781|ref|YP_001320830.1| hypothetical protein Amet_3031 [Alkaliphilus metalliredigens QYMF] gi|172052485|sp|A6TSK3|RRMF_ALKMQ RecName: Full=Probable rRNA maturation factor gi|149950643|gb|ABR49171.1| protein of unknown function UPF0054 [Alkaliphilus metalliredigens QYMF] Length = 155 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 6/156 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + ++N EI + + ++ KAV + S Y + E+SL F + I+ L Sbjct: 1 MPVSLVIDNRQKQVEIEQKLI--MLLEKAV--ITSLAYEGWDPDYEVSLSFVSNKEIQNL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N YRG D T+VLSFP + +LGD+V++ E +A FE + Sbjct: 57 NRTYRGKDYATDVLSFPLVDDTDGFPMGEEKLLGDVVISVEKAVEQAKEYQHSFEREMGF 116 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L++H HL+GYDH+++ +A M E +L ++G+ Sbjct: 117 LMVHSLFHLMGYDHLEETEAQEMRKREEIVLTEMGL 152 >gi|238924118|ref|YP_002937634.1| hypothetical protein EUBREC_1756 [Eubacterium rectale ATCC 33656] gi|259646480|sp|C4ZA59|RRMF_EUBR3 RecName: Full=Probable rRNA maturation factor gi|238875793|gb|ACR75500.1| hypothetical protein EUBREC_1756 [Eubacterium rectale ATCC 33656] Length = 165 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 18/157 (11%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E + E V VS + F E E++L TD+ I +N EYR ID+PT+VL Sbjct: 10 ECNFNFDYEKVAEAVVSASLEHENFPYE--AEVNLTLTDNEGIHAINKEYRQIDRPTDVL 67 Query: 85 SFPT----------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 SFP + +MLGDI+++ + ++ +A G + Sbjct: 68 SFPMLSYETPGDFSFLSDENEDDFNPDTGEVMLGDIIISVDKVKEQAVEYGHSEKREFAF 127 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LI H LHL GYDH++ +A VME +R IL+ LGI Sbjct: 128 LITHSMLHLFGYDHMEADEAAVMEEHQRKILDALGIT 164 >gi|182678043|ref|YP_001832189.1| hypothetical protein Bind_1057 [Beijerinckia indica subsp. indica ATCC 9039] gi|238691235|sp|B2IIK7|RRMF_BEII9 RecName: Full=Probable rRNA maturation factor gi|182633926|gb|ACB94700.1| protein of unknown function UPF0054 [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 92/159 (57%), Gaps = 6/159 (3%) Query: 13 LQIAVENALW---GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + IAVE+ W G+E + + A+ +++ E+SL+F D I Sbjct: 5 IDIAVESPRWTEAGNEGEDPLSLDALVEAAIGAAVARAGIALHAEAEVSLLFCDDAFIRG 64 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++RG+DKPTNVLSFP+ D +LGDI++A+E EA K H+ HL Sbjct: 65 LNHQWRGLDKPTNVLSFPSDEDLEDA---RLLGDIIIAFETSAGEAKAEAKSLAAHVSHL 121 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HGFLHL+GYDH + ++A ME +E+ IL DLGI DPY Sbjct: 122 VVHGFLHLIGYDHEEAEEAEEMERMEQVILADLGIADPY 160 >gi|309803146|ref|ZP_07697243.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 11V1-d] gi|325912150|ref|ZP_08174548.1| translation metalloprotein YbeY [Lactobacillus iners UPII 143-D] gi|308164654|gb|EFO66904.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 11V1-d] gi|325476100|gb|EGC79268.1| translation metalloprotein YbeY [Lactobacillus iners UPII 143-D] Length = 175 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + LI +K K N E+S+ F D ++I +N YRG Sbjct: 5 DISFNDEVDFLNDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVDINKIHEINKNYRG 64 Query: 77 IDKPTNVLSFPTAFASSDGCSSLML---------GDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF + + + + GD+ + E++E A F Sbjct: 65 KDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 125 YTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLP 162 >gi|260438417|ref|ZP_05792233.1| putative metalloprotease [Butyrivibrio crossotus DSM 2876] gi|292809003|gb|EFF68208.1| putative metalloprotease [Butyrivibrio crossotus DSM 2876] Length = 166 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 75/155 (48%), Gaps = 21/155 (13%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +I T+ + V A+ Y E+SL TD+ I +N E+R ID+PT+VL Sbjct: 14 DIDYETIADKVINAALD------YEKCPYEAEVSLTLTDNKGIHDINKEFRNIDRPTDVL 67 Query: 85 SFPTAFASSDG---------------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP + G LMLGDIV++ + +E +A G L Sbjct: 68 SFPMVEYETPGEFDFLENEYDCFNPETGELMLGDIVISLDKVEEQAANYGHSVTREYAFL 127 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I H LHL+GYDH+++ DA ME + ILE LGI Sbjct: 128 IAHSMLHLMGYDHMEENDAKEMERRQAEILESLGI 162 >gi|33595813|ref|NP_883456.1| putative metalloprotease [Bordetella parapertussis 12822] gi|46577410|sp|Q7WB68|RRMF_BORPA RecName: Full=Probable rRNA maturation factor gi|33565892|emb|CAE36440.1| conserved hypothetical protein [Bordetella parapertussis] Length = 157 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 45/113 (39%), Positives = 57/113 (50%), Gaps = 4/113 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL L LN E+RG D TNVL+F G + GDIV+ ++ EA Sbjct: 46 ELGLRLVGLAEGRRLNREFRGRDYATNVLTFEY----GTGPDGVARGDIVVCVPVLAREA 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H HL +HG LH LGYDH+ +A ME LE +L +GI DPY Sbjct: 102 REQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETVVLARMGIADPY 154 >gi|219670284|ref|YP_002460719.1| hypothetical protein Dhaf_4278 [Desulfitobacterium hafniense DCB-2] gi|254803892|sp|B8FUL3|RRMF_DESHD RecName: Full=Probable rRNA maturation factor gi|219540544|gb|ACL22283.1| protein of unknown function UPF0054 [Desulfitobacterium hafniense DCB-2] Length = 157 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 11/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+ ++ + L L E AKAV + E+SL D RI L Sbjct: 3 LDINWEEDSIPENERGSLTGLLEQGIAKAVH------LSAESEEAEVSLTLVDDARIHEL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----MLGDIVLAYEIIEIEANVLGKEFENH 125 N +YRG+D+PT+VLSF SD L +LGDI+++ E +A G FE Sbjct: 57 NRDYRGVDRPTDVLSFALQEERSDEPDILDYEDHLLGDIIISVERARAQAIDYGHSFERE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LV+L +HG LHLLGYDH++++D M E +++ +G+ Sbjct: 117 LVYLAVHGTLHLLGYDHMEEEDKEEMRRQEEAVMSQIGL 155 >gi|254461073|ref|ZP_05074489.1| conserved hypothetical protein TIGR00043 [Rhodobacterales bacterium HTCC2083] gi|206677662|gb|EDZ42149.1| conserved hypothetical protein TIGR00043 [Rhodobacteraceae bacterium HTCC2083] Length = 162 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 85/162 (52%), Gaps = 16/162 (9%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E++ W + L TL E K ++ L + + E++++ D RI LN E+R Sbjct: 7 IEDSRWQT-VDLATLAETAARKTLTQLD-----LDPTVFEIAILACDDTRIAELNTEFRD 60 Query: 77 IDKPTNVLSFPTAFASSDGCSSLM----------LGDIVLAYEIIEIEANVLGKEFENHL 126 PTNVLS+P+ +SD + LGDI ++Y+ EA K +H Sbjct: 61 KPTPTNVLSWPSDERASDIDGARPEKPVLPMDAELGDIAISYDTCAREAQSANKPLTDHT 120 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HLIIHG LHLLGYDH+ D DA +ME E IL LG++ PY Sbjct: 121 THLIIHGVLHLLGYDHIRDLDATLMEQTEVLILGTLGVDTPY 162 >gi|217964389|ref|YP_002350067.1| hypothetical protein LMHCC_1105 [Listeria monocytogenes HCC23] gi|290894226|ref|ZP_06557195.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|254799939|sp|B8DE46|RRMF_LISMH RecName: Full=Probable rRNA maturation factor gi|217333659|gb|ACK39453.1| conserved hypothetical protein [Listeria monocytogenes HCC23] gi|290556223|gb|EFD89768.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307571046|emb|CAR84225.1| metal-dependent hydrolase family protein [Listeria monocytogenes L99] Length = 161 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + E DE + L E + + Y E ELSL FT + I + Sbjct: 4 LEIDLLDETKKLPDED--KQLVENILQ------FAAEYLKIEQGTELSLTFTTNEGIREI 55 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N EYR D+ T+V+SF D + MLGDI+++ E E +A G Sbjct: 56 NREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGH 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HG LHLLGYDH++ + VM GL++ +L+ G+ Sbjct: 116 TKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKEVLDAYGLE 160 >gi|325290529|ref|YP_004266710.1| metalloprotease ybeY [Syntrophobotulus glycolicus DSM 8271] gi|324965930|gb|ADY56709.1| metalloprotease ybeY [Syntrophobotulus glycolicus DSM 8271] Length = 168 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L I E + + EV+ A+ ++ + + + E+ ++FTD+ I L Sbjct: 1 MELDITWEEPSISPQE--KAGWEVLIAQGITRALQEAEGPENG--EIGVLFTDNETIRGL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS----------------SLMLGDIVLAYEIIEIE 114 N +YRGID PT+VLSF + + MLGDIV++ + + Sbjct: 57 NRDYRGIDNPTDVLSFALQEKTEEEPDIYFHHDEDQDDGFPDLGAMLGDIVISVQRAREQ 116 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 A G E +V L +HG LHLLGYDH ++ M LE I+E +G+ Sbjct: 117 AAEYGHSLEREIVFLAVHGTLHLLGYDHQTEEQRSGMRELEERIMEKIGLA 167 >gi|309806598|ref|ZP_07700595.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 03V1-b] gi|312872992|ref|ZP_07733052.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2062A-h1] gi|312874169|ref|ZP_07734203.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2052A-d] gi|315653579|ref|ZP_07906499.1| metal-dependent hydrolase [Lactobacillus iners ATCC 55195] gi|308167018|gb|EFO69200.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 03V1-b] gi|311090239|gb|EFQ48649.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2052A-d] gi|311091514|gb|EFQ49898.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2062A-h1] gi|315488941|gb|EFU78583.1| metal-dependent hydrolase [Lactobacillus iners ATCC 55195] Length = 175 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + LI +K K N E+S+ F D ++I +N YRG Sbjct: 5 DISFNDEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVDINKIHEINKNYRG 64 Query: 77 IDKPTNVLSFPTAFASSDGCSSLML---------GDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF + + + + GD+ + E++E A F Sbjct: 65 KDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 125 YTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLP 162 >gi|260427895|ref|ZP_05781874.1| conserved hypothetical protein [Citreicella sp. SE45] gi|260422387|gb|EEX15638.1| conserved hypothetical protein [Citreicella sp. SE45] Length = 159 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 7/126 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-------SLMLG 102 + + E++++ D RI LN ++R PTNVLS+P+ + LG Sbjct: 34 LDPDGFEIAILACDDARIAELNGDFRDKPAPTNVLSWPSEERDPEDLPEPGMPGMPEELG 93 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI +A+E EA K HL HLI+H LHLLGYDH+ D+DA VME LE IL L Sbjct: 94 DIAIAWETCLREAQEQNKPLSAHLTHLIVHATLHLLGYDHIRDEDATVMETLEVEILGKL 153 Query: 163 GINDPY 168 G+ +PY Sbjct: 154 GVANPY 159 >gi|65321675|ref|ZP_00394634.1| COG0319: Predicted metal-dependent hydrolase [Bacillus anthracis str. A2012] Length = 156 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIV 105 E+ ELS+ F D+ RI +N +YR D+PT+V+SF MLGD++ Sbjct: 36 EDGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGVEMPRMLGDLI 95 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + +A G F+ L L +HGFLHLLGYDH+ ++D M G ++ LE G+ Sbjct: 96 ISIPRAKEQAEEYGHSFDRELGFLALHGFLHLLGYDHMTEEDEKEMFGRQKEXLEAFGL 154 >gi|37520812|ref|NP_924189.1| putative metalloprotease [Gloeobacter violaceus PCC 7421] gi|46577366|sp|Q7NL83|RRMF_GLOVI RecName: Full=Probable rRNA maturation factor gi|35211807|dbj|BAC89184.1| gll1243 [Gloeobacter violaceus PCC 7421] Length = 194 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 15/158 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L +Q AV++ + + F + + L S G VEL+L TD I Sbjct: 38 ELCIQAAVDDPVG------EARWQSWFDQWLLELQSAG------AVELTLRLTDDAEIRR 85 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN +RG+D PT+VLSF + L LGDIV++ +A G E L Sbjct: 86 LNARFRGVDAPTDVLSFEFEADDTQALIAEEPLYLGDIVVSVPTATRQAREFGHTLEVEL 145 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HG LHLLG+DH D++ M + +L+ + + Sbjct: 146 AWLAVHGLLHLLGWDHPDEQSWRAMVTQQARLLKGVNV 183 >gi|167037777|ref|YP_001665355.1| putative metalloprotease [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039983|ref|YP_001662968.1| putative metalloprotease [Thermoanaerobacter sp. X514] gi|256751971|ref|ZP_05492841.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus CCSD1] gi|300914073|ref|ZP_07131389.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X561] gi|307724694|ref|YP_003904445.1| hypothetical protein Thet_1564 [Thermoanaerobacter sp. X513] gi|320116192|ref|YP_004186351.1| hypothetical protein Thebr_1395 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687637|sp|B0K706|RRMF_THEPX RecName: Full=Probable rRNA maturation factor gi|238687667|sp|B0KA56|RRMF_THEP3 RecName: Full=Probable rRNA maturation factor gi|166854223|gb|ABY92632.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X514] gi|166856611|gb|ABY95019.1| protein of unknown function UPF0054 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749176|gb|EEU62210.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus CCSD1] gi|300889008|gb|EFK84154.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X561] gi|307581755|gb|ADN55154.1| protein of unknown function UPF0054 [Thermoanaerobacter sp. X513] gi|319929283|gb|ADV79968.1| protein of unknown function UPF0054 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 159 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D I+L L E V + + VE+S+ F D+ I LN YRGIDKPT+V Sbjct: 13 DAINLEELVEKVIKTVLE------VEEVIDNVEVSVSFVDNEEIRKLNKYYRGIDKPTDV 66 Query: 84 LSFPTAFASS----------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 LSFP A D +GDIV++ E ++ G FE + +L H Sbjct: 67 LSFPLAEFEDTYGEVEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHSFEREVAYLTAHS 126 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHLLGYDH +++ +M E ++ L I Sbjct: 127 MLHLLGYDHETEEERKIMREKEEEVMARLNI 157 >gi|257884086|ref|ZP_05663739.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257819924|gb|EEV47072.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] Length = 158 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ E +E + FA Y E+S+ F D+ I+ + Sbjct: 1 MDITFMDETNQVSEEKMKEIDDLLQFAA--------SYLKLPEETEMSVTFMDNATIQVI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLGK 120 N +YRG D PT+V+SF D +LGDI+++ E +A G Sbjct: 53 NRDYRGKDAPTDVISFALEEEGEDEIPVIFEDGENPLPRVLGDIMISIERAAEQAEAYGH 112 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 113 SYDRELGFLAVHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGLK 157 >gi|291612931|ref|YP_003523088.1| hypothetical protein Slit_0460 [Sideroxydans lithotrophicus ES-1] gi|291583043|gb|ADE10701.1| protein of unknown function UPF0054 [Sideroxydans lithotrophicus ES-1] Length = 152 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 65/158 (41%), Gaps = 21/158 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L +Q A R + E V++SL + TL Sbjct: 13 LSVQYASNAGKLPTRQQFRRWAKAAL---------------ERDVQISLRLVNEAEGRTL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++RG D TNVL+F + GD+V+ ++ EA GK+ H HL+ Sbjct: 58 NRDFRGKDYATNVLTFVYDDTVP------LSGDVVICVPVVAREAKEQGKDLFAHYAHLV 111 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IH LHL GYDH +DA ME E +++ L PY Sbjct: 112 IHAVLHLQGYDHEKKRDAEKMEARETALMLKLRYPAPY 149 >gi|311742996|ref|ZP_07716804.1| cupin domain protein [Aeromicrobium marinum DSM 15272] gi|311313676|gb|EFQ83585.1| cupin domain protein [Aeromicrobium marinum DSM 15272] Length = 158 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 20/166 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + E+ + D + L LC V + EL+L D+ I L Sbjct: 1 MNVDVLNESGVEADVLDLTRLCRFVMRRM----------RLHPATELTLRLVDADTIAVL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 N ++ G D PT+VLSFP + LGDI L ++ E +A G + + Sbjct: 51 NRQWMGKDGPTDVLSFPMDELTPGRDDEESPEGYLGDIALCPQVAEQQAPAAGHTTADEV 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL-----EDLGINDP 167 L +HG LHLLGYDH + + M GL+ +L LG+ DP Sbjct: 111 DLLTVHGILHLLGYDHAEPDEHREMFGLQGRLLVEWQRAALGL-DP 155 >gi|134302076|ref|YP_001122045.1| hypothetical protein FTW_1112 [Francisella tularensis subsp. tularensis WY96-3418] gi|166228884|sp|A4IYC3|RRMF_FRATW RecName: Full=Probable rRNA maturation factor gi|134049853|gb|ABO46924.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 162 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIE 112 E++L + I+ +N ++R DKPTN++SF D ++ LGDIV+A ++E Sbjct: 38 AEVNLNIVSNDEIQQINKQFRNKDKPTNIISFKFEKPQGLPDDIANDFLGDIVIAPAVLE 97 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA KE +H H+ IHG LHLLGY+H DD++A VME LE +L LGI +PY Sbjct: 98 NEAKEQNKELNDHWQHIFIHGLLHLLGYNHQDDQEAEVMENLEIQLLAQLGIANPY 153 >gi|223044370|ref|ZP_03614404.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|314933742|ref|ZP_07841107.1| putative metalloprotease [Staphylococcus caprae C87] gi|222442239|gb|EEE48350.1| conserved hypothetical protein [Staphylococcus capitis SK14] gi|313653892|gb|EFS17649.1| putative metalloprotease [Staphylococcus caprae C87] Length = 156 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-----SL 99 +K ++ ELS+ F D I+ +N YR DK T+V+SF + Sbjct: 28 AKKQEHIDSEAELSVTFVDKDEIQNINKMYRDKDKVTDVISFALEEDEPEIDMNELDIPR 87 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +LGDI++ ++ +A G FE L L +HGFLHLLGYDH+ D+D M G + +IL Sbjct: 88 VLGDIIICTDVAHEQAENYGHSFERELGFLALHGFLHLLGYDHMTDEDEKEMFGRQDAIL 147 Query: 160 EDLGIN 165 G+ Sbjct: 148 NAYGLT 153 >gi|89895855|ref|YP_519342.1| hypothetical protein DSY3109 [Desulfitobacterium hafniense Y51] gi|122481904|sp|Q24SU4|RRMF_DESHY RecName: Full=Probable rRNA maturation factor gi|89335303|dbj|BAE84898.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 157 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 11/159 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD+ ++ + L L E AKAV + E+SL D RI L Sbjct: 3 LDINWEEDSIPENERGSLTGLLEQGIAKAVH------LSAESEEAEVSLTLVDDARIHEL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL-----MLGDIVLAYEIIEIEANVLGKEFENH 125 N +YRG+D+PT+VLSF SD L +LGDI+++ E +A G FE Sbjct: 57 NRDYRGVDRPTDVLSFALQEERSDEPDILDYEDHLLGDIIISVERARAQAIDYGHSFERE 116 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LV+L +HG LHLLGYDH+++ D M E +++ +G+ Sbjct: 117 LVYLAVHGTLHLLGYDHMEEADKEKMRRQEEAVMSQIGL 155 >gi|114798379|ref|YP_758839.1| hypothetical protein HNE_0105 [Hyphomonas neptunium ATCC 15444] gi|123129252|sp|Q0C604|RRMF_HYPNA RecName: Full=Probable rRNA maturation factor gi|114738553|gb|ABI76678.1| conserved hypothetical protein TIGR00043 [Hyphomonas neptunium ATCC 15444] Length = 150 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 12/162 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + VE+ W L LC F A Y ++L+ D+H + Sbjct: 1 MISFDLIVEDDSWAALGDLEALCRKAFDAA-------EYVAPVEEGNIALLLADNHVLHQ 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++R DKPT+VLSFP+ LGDI +A+ + +A + GK + HLVHL Sbjct: 54 LNLDFRSKDKPTDVLSFPSL-----PMDRPFLGDIAVAWGVSASDAKIQGKPLDAHLVHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +IHG+LHLLG+DH D +A ME LE L L I +PY D Sbjct: 109 LIHGYLHLLGFDHETDDEAAEMEALEIKALASLDIANPYRND 150 >gi|69247283|ref|ZP_00604284.1| Protein of unknown function UPF0054 [Enterococcus faecium DO] gi|257879928|ref|ZP_05659581.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257890443|ref|ZP_05670096.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257893049|ref|ZP_05672702.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|258616605|ref|ZP_05714375.1| putative metalloprotease [Enterococcus faecium DO] gi|260559562|ref|ZP_05831742.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261208626|ref|ZP_05923063.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566735|ref|ZP_06447149.1| metalloprotease [Enterococcus faecium D344SRF] gi|293556348|ref|ZP_06674929.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|293559426|ref|ZP_06675965.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|294616316|ref|ZP_06696109.1| hypothetical protein EfmE1636_2374 [Enterococcus faecium E1636] gi|294618706|ref|ZP_06698239.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|314939542|ref|ZP_07846770.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a04] gi|314942703|ref|ZP_07849529.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133C] gi|314948959|ref|ZP_07852325.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0082] gi|314953306|ref|ZP_07856234.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133A] gi|314993386|ref|ZP_07858751.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133B] gi|314995736|ref|ZP_07860825.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a01] gi|68194905|gb|EAN09375.1| Protein of unknown function UPF0054 [Enterococcus faecium DO] gi|257814156|gb|EEV42914.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257826803|gb|EEV53429.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257829428|gb|EEV56035.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|260074230|gb|EEW62552.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260077128|gb|EEW64848.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161456|gb|EFD09342.1| metalloprotease [Enterococcus faecium D344SRF] gi|291590830|gb|EFF22546.1| hypothetical protein EfmE1636_2374 [Enterococcus faecium E1636] gi|291595049|gb|EFF26393.1| conserved hypothetical protein [Enterococcus faecium E1679] gi|291601415|gb|EFF31686.1| conserved hypothetical protein [Enterococcus faecium E1039] gi|291606640|gb|EFF36035.1| conserved hypothetical protein [Enterococcus faecium E1162] gi|313590008|gb|EFR68853.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a01] gi|313592051|gb|EFR70896.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133B] gi|313594649|gb|EFR73494.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133A] gi|313598568|gb|EFR77413.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133C] gi|313641178|gb|EFS05758.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0133a04] gi|313644618|gb|EFS09198.1| conserved hypothetical protein TIGR00043 [Enterococcus faecium TX0082] Length = 158 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ E +E + FA Y E+S+ F D+ I+ + Sbjct: 1 MDITFMDETNQVSEEKMKEIDDLLQFAA--------SYLKLPEETEMSVTFMDNAAIQVI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLGK 120 N +YRG D PT+V+SF D +LGDI+++ E +A G Sbjct: 53 NRDYRGKDAPTDVISFALEEEGEDEIPVIFEDGENPLPRVLGDIMISIERAAEQAEAYGH 112 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 113 SYDRELGFLAVHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGLK 157 >gi|291524855|emb|CBK90442.1| conserved hypothetical protein TIGR00043 [Eubacterium rectale DSM 17629] gi|291528996|emb|CBK94582.1| conserved hypothetical protein TIGR00043 [Eubacterium rectale M104/1] Length = 165 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 18/157 (11%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E + E V VS + F E E++L TD+ I +N EYR ID+PT+VL Sbjct: 10 ECNFNFDYEKVAEAVVSASLEHESFPYE--AEVNLTLTDNEGIHAINKEYRQIDRPTDVL 67 Query: 85 SFPT----------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 SFP + +MLGDI+++ + ++ +A G + Sbjct: 68 SFPMLSYETPGDFSFISDENEDDFNPDTGEVMLGDIIISVDKVKEQALEYGHSEKREFAF 127 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LI H LHL GYDH++ +A VME +R IL+ LGI Sbjct: 128 LITHSMLHLFGYDHMEADEAAVMEEHQRKILDALGIT 164 >gi|260494090|ref|ZP_05814221.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260198236|gb|EEW95752.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 163 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + ++ + LSL+ TD+ I+ +N EYR D PT+V+SF Sbjct: 33 IKKVLELEEIESNRPLYLSLLLTDNRNIQVINREYRDKDAPTDVISFAYHETEDFNIGPY 92 Query: 100 M-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDI+++ E +E +A+ FE +++ HG LH+LGYDH++++D +M E +I Sbjct: 93 DTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMREREEAI 152 Query: 159 LEDLGINDPYE 169 L G Y+ Sbjct: 153 LSSFGYTRDYK 163 >gi|317056498|ref|YP_004104965.1| hypothetical protein Rumal_1833 [Ruminococcus albus 7] gi|315448767|gb|ADU22331.1| protein of unknown function UPF0054 [Ruminococcus albus 7] Length = 170 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 7/146 (4%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ + ++ + ++ F K+ E+S+ F + +I LN E+R ID+PT+VL Sbjct: 14 EVKIPVGIRMLVRRCCHAVLEYEEFGKD--AEVSVSFVNDKQIHELNKEHRDIDRPTDVL 71 Query: 85 SFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 SFP + + + +LGDIV++ E +A V G E + L +H LHLLGY Sbjct: 72 SFPLGENGEYDVNYESGACLLGDIVISLETATRQAQVYGHSLEREVGFLTVHSMLHLLGY 131 Query: 141 DHVDDK-DACVMEGLERSILEDLGIN 165 DH + +M E +IL LGI+ Sbjct: 132 DHEESSLQERIMREKEEAILAQLGIS 157 >gi|160896671|ref|YP_001562253.1| hypothetical protein Daci_1224 [Delftia acidovorans SPH-1] gi|238687183|sp|A9BUG5|RRMF_DELAS RecName: Full=Probable rRNA maturation factor gi|160362255|gb|ABX33868.1| protein of unknown function UPF0054 [Delftia acidovorans SPH-1] Length = 152 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 15/159 (9%) Query: 13 LQIAVENALWGD-EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 LQ++++ A + + +H L + + + ++ E+++ D+ + LN Sbjct: 6 LQLSLQFARFAEAPVHRAVLSRSKVTRWIRHALAV-------DAEITVRIVDAEEGQQLN 58 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 EYR D TNVL+F + D+VL ++E EA K E H HL++ Sbjct: 59 REYRQKDYATNVLTFDYQQ------EPTAMADLVLCAPVVEREAREQNKTLEEHYAHLLV 112 Query: 132 HGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 HG LH G+DH ++DA ME E I+ +LG DPY Sbjct: 113 HGTLHAQGWDHETSEQDAEEMEAYETEIMVELGFADPYA 151 >gi|319940869|ref|ZP_08015208.1| hypothetical protein HMPREF9464_00427 [Sutterella wadsworthensis 3_1_45B] gi|319805751|gb|EFW02532.1| hypothetical protein HMPREF9464_00427 [Sutterella wadsworthensis 3_1_45B] Length = 152 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 6/119 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 E E ++ F D LN ++R D TNVL+F +++ DIV+ ++ Sbjct: 33 ELDGEFTVRFVDEEEGRELNHQFRRKDYATNVLTFDYQR------EPVVMADIVICPAVL 86 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 E +A K +HL HL+IHG LH GYDH+DD++A VME E I+E LG +PY Sbjct: 87 ERQAAEQQKPLRDHLAHLLIHGVLHAQGYDHLDDEEAEVMEARETEIMESLGFPNPYSD 145 >gi|226939223|ref|YP_002794294.1| metal-dependent hydrolase [Laribacter hongkongensis HLHK9] gi|254801582|sp|C1DAV4|RRMF_LARHH RecName: Full=Probable rRNA maturation factor gi|226714147|gb|ACO73285.1| Predicted metal-dependent hydrolase [Laribacter hongkongensis HLHK9] Length = 166 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 51/132 (38%), Positives = 67/132 (50%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + + + ++ L D+ + LN EYRG D TNVLSF Sbjct: 34 FARWVGAALQGRSRPAQIGLHVVDNAEGQRLNAEYRGKDSATNVLSFALNEGEEAVAGLP 93 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++GDIVLA E++ EA GK+ H HL +HG LHL G+DH D +A ME LE IL Sbjct: 94 LMGDIVLAAEVVAREAAEQGKDLHAHYAHLTVHGMLHLQGHDHETDTEAEAMEALETVIL 153 Query: 160 EDLGINDPYEVD 171 LG DPY V+ Sbjct: 154 ARLGYTDPYAVE 165 >gi|145223294|ref|YP_001133972.1| putative metalloprotease [Mycobacterium gilvum PYR-GCK] gi|315443754|ref|YP_004076633.1| hypothetical protein Mspyr1_21440 [Mycobacterium sp. Spyr1] gi|189039754|sp|A4T2C0|RRMF_MYCGI RecName: Full=Probable rRNA maturation factor gi|145215780|gb|ABP45184.1| protein of unknown function UPF0054 [Mycobacterium gilvum PYR-GCK] gi|315262057|gb|ADT98798.1| conserved hypothetical protein TIGR00043 [Mycobacterium sp. Spyr1] Length = 178 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V K N ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSESELVSVARFVIRKMDVN----------PAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDTPEPGPSMLGDIVLCPEFAAKQAADAGHTLGQ 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M L+R +LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPDEEKEMFALQRELLEEW 148 >gi|73662495|ref|YP_301276.1| hypothetical protein SSP1186 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642702|sp|Q49Y13|RRMF_STAS1 RecName: Full=Probable rRNA maturation factor gi|72495010|dbj|BAE18331.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 153 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEI 113 LS+ F D I+ +N YR DK T+V+SF + +LGDI++ ++ + Sbjct: 40 LSVTFVDKDEIQEINKMYRDKDKVTDVISFALEEDEPEITGIEMPRVLGDIIICTDVAQE 99 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A+ G FE L L +HGFLHLLGYDH++++D M G + IL G+ Sbjct: 100 QADSYGHSFERELGFLALHGFLHLLGYDHMNEQDEKQMFGRQDQILNAYGLT 151 >gi|328957478|ref|YP_004374864.1| putative metalloprotease [Carnobacterium sp. 17-4] gi|328673802|gb|AEB29848.1| putative metalloprotease [Carnobacterium sp. 17-4] Length = 158 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 11/152 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE + + +++ + + E+S+ F D+ I+ +N YRG D+PT+V Sbjct: 7 DETNKIATEQKELIQSLLEF-AGNHLELPKDTEMSVTFVDNENIQKINKTYRGKDQPTDV 65 Query: 84 LSFPTAFASSDG----------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +SF + D +GDI+++ + +A+ G F+ L L +HG Sbjct: 66 ISFAIEDEAEDELMINFDTLEEPMPRNIGDIIISVDKTASQADEYGHSFDRELGFLALHG 125 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 FLHL GYDH+ +D M GL++ ILE G+ Sbjct: 126 FLHLNGYDHMTPEDEKEMFGLQKEILEAYGLK 157 >gi|307266422|ref|ZP_07547958.1| protein of unknown function UPF0054 [Thermoanaerobacter wiegelii Rt8.B1] gi|306918530|gb|EFN48768.1| protein of unknown function UPF0054 [Thermoanaerobacter wiegelii Rt8.B1] Length = 159 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D I+L L E V + + VE+S+ F D+ I LN YRGIDKPT+V Sbjct: 13 DAINLEELVEKVIKTVLE------VEEVIDNVEVSVSFVDNEEIRKLNKYYRGIDKPTDV 66 Query: 84 LSFPTAFASS----------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 LSFP A D +GDIV++ E ++ G FE + +L H Sbjct: 67 LSFPLAEFEDTYAEVEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHSFEREVAYLTAHS 126 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHLLGYDH +++ +M E ++ L I Sbjct: 127 MLHLLGYDHETEEERKIMREKEEEVMARLNI 157 >gi|291533049|emb|CBL06162.1| conserved hypothetical protein TIGR00043 [Megamonas hypermegale ART12/1] Length = 159 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 4/138 (2%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E + + G + E+S+ FTD+ I +N EYR +D+PT+V+SF Sbjct: 20 DEKLSDTVKEAVEKVGQLYALDNAEVSITFTDNEHIHEINREYRKVDRPTDVISFALNEG 79 Query: 92 SSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 MLGDI+++ E +A G + L +HG LHLLGYDH+++ D Sbjct: 80 DEPNIEGEIPVNMLGDIIISVEKAIEQAGDYGHSIRREIAFLTVHGMLHLLGYDHIEEAD 139 Query: 148 ACVMEGLERSILEDLGIN 165 M E ++E LGI+ Sbjct: 140 RVEMRKEEDFVMEQLGIS 157 >gi|254470656|ref|ZP_05084059.1| diacyglycerol kinase [Pseudovibrio sp. JE062] gi|211959798|gb|EEA94995.1| diacyglycerol kinase [Pseudovibrio sp. JE062] Length = 168 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 90/158 (56%), Gaps = 5/158 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + +E W E TL + + + V EN E+SLVFTD I+ LN Sbjct: 9 IDLLIEAGDWESE---ETLEAIAEKAIAAAFATSDLSVIEN-TEVSLVFTDDAHIQELNK 64 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +R DKPTNVLSFP S + +LGDI++A E ++ EA LG FE+HL+HLI+H Sbjct: 65 MWRQKDKPTNVLSFP-GDDSEEPPFGPLLGDIIIANETVKREAVELGIPFEHHLIHLIVH 123 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G LHL GYDH D++A ME ER IL L I DPY+ Sbjct: 124 GTLHLFGYDHQIDEEAEEMEAEERLILASLQIPDPYKD 161 >gi|311069133|ref|YP_003974056.1| putative metalloprotease [Bacillus atrophaeus 1942] gi|310869650|gb|ADP33125.1| putative metalloprotease [Bacillus atrophaeus 1942] Length = 157 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E +E+ + FA + ++ E+S+ + I+ +N Sbjct: 5 IDIIDETESVAEEMLKEVEKLLQFAAEREGV--------QDQAEVSVTIVTNDEIQQINK 56 Query: 73 EYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 EYRG D PT+V+SF +LGDI+++ + +A G F L Sbjct: 57 EYRGKDTPTDVISFALEEEGEDEVEIVGAEMPPVLGDIIISADRTREQAEEYGHSFLREL 116 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHLLGYDH+ + M ++ +L++ G+ Sbjct: 117 GFLAVHGFLHLLGYDHMTKEQEEEMFTKQKDLLDNYGLT 155 >gi|312875653|ref|ZP_07735654.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2053A-b] gi|311088907|gb|EFQ47350.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 2053A-b] Length = 175 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + LI +K K N E+S+ F + ++I +N YRG Sbjct: 5 DISFNDEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVNINKIHEINKNYRG 64 Query: 77 IDKPTNVLSFPTAFASSDGCSSLML---------GDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF + + + + GD+ + E++E A F Sbjct: 65 KDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 125 YTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLP 162 >gi|42519247|ref|NP_965177.1| hypothetical protein LJ1323 [Lactobacillus johnsonii NCC 533] gi|62901443|sp|Q74IY8|RRMF_LACJO RecName: Full=Probable rRNA maturation factor gi|41583535|gb|AAS09143.1| hypothetical protein LJ_1323 [Lactobacillus johnsonii NCC 533] Length = 175 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE++ + + +SNL+ +K KEN E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVNFLKDSDKDWITWISNLLLSAKKEIHKENTQEMSINFVSSKKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF S D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFISAFSDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH++D +A VM G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGYDHIEDDEAKVMFGIQGKVLREYGLP 162 >gi|6523485|emb|CAB62265.1| YbeY protein [Salmonella typhimurium] Length = 123 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 15/137 (10%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN A DE + + V + + E+++ D Sbjct: 1 MSQVILDLQLACENHAGLPDEAQFQRWLDGVIPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG DKPTNVLSFP F + G +LGD+++ +++E EA K E Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFP--FEAPAGIEMPLLGDLIICRQVVEQEAQEQSKPLEA 106 Query: 125 HLVHLIIHGFLHLLGYD 141 H H+++HG LHLLGYD Sbjct: 107 HWAHMVVHGSLHLLGYD 123 >gi|312135090|ref|YP_004002428.1| hypothetical protein Calow_1065 [Caldicellulosiruptor owensensis OL] gi|311775141|gb|ADQ04628.1| protein of unknown function UPF0054 [Caldicellulosiruptor owensensis OL] Length = 158 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 12/161 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +V+N I F++E E+S++ D++ I+ LN Sbjct: 1 MKIFIQNQQ--DKVDVAEHISKIIEASVANTI--KIFLQEENFEVSVLIVDNNLIKELNR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC--------SSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +YR I+K T+VLSFP + + LGDIV++ E +A G E Sbjct: 57 KYRNINKETDVLSFPIFEFKNGQLQEDIVIVEDEIPLGDIVISIEKALQQAEEFGHSLER 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 117 EVAYLTVHSVLHLLGFDHIEEDDRKVMRKYEEQILDSMGLT 157 >gi|289434747|ref|YP_003464619.1| hypothetical protein lse_1382 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170991|emb|CBH27533.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633222|gb|EFS00094.1| putative metalloprotease [Listeria seeligeri FSL N1-067] gi|313637811|gb|EFS03155.1| putative metalloprotease [Listeria seeligeri FSL S4-171] Length = 161 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + E E + L E + + Y + ELSL FT + I + Sbjct: 4 LEIDLIDETKQIPTED--KQLVENILQ------FAADYLKIDAGTELSLTFTTNEGIREI 55 Query: 71 NFEYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N EYR D+ T+V+SF + D + MLGDI+++ E E +A G Sbjct: 56 NREYRNKDQATDVISFALEELGEGETEIDWGEFDLETPKMLGDIIISTEKAEEQAKDYGH 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 116 SKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE 160 >gi|325129682|gb|EGC52496.1| hypothetical protein TIGR00043 [Neisseria meningitidis OX99.30304] Length = 171 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMRAAGFPNPYQED 169 >gi|59800603|ref|YP_207315.1| hypothetical protein NGO0145 [Neisseria gonorrhoeae FA 1090] gi|268596185|ref|ZP_06130352.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|291044524|ref|ZP_06570233.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293397660|ref|ZP_06641866.1| hypothetical protein NGNG_00646 [Neisseria gonorrhoeae F62] gi|59717498|gb|AAW88903.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|268549973|gb|EEZ44992.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|291011418|gb|EFE03414.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611606|gb|EFF40675.1| hypothetical protein NGNG_00646 [Neisseria gonorrhoeae F62] Length = 211 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA I E F + + + Y ++ Sbjct: 43 RAKKYPFLTLQRQRFHLNFENASSAAGIP----AERDFYRWAWSALKNEYLR----ADIG 94 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF C S + GD+++ +++ EA Sbjct: 95 LILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSERLYGDLIICPQVVLKEAA 154 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL IHG LHL+GYDH+ D +A +ME E ++ G +PY D Sbjct: 155 EQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAEIMEAEEIRLMRAAGYPNPYRED 209 >gi|316985396|gb|EFV64344.1| conserved hypothetical protein [Neisseria meningitidis H44/76] Length = 209 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 72 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 127 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 128 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 187 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 188 IMEAEEIRLMRAAGFPNPYQED 209 >gi|239817628|ref|YP_002946538.1| hypothetical protein Vapar_4667 [Variovorax paradoxus S110] gi|239804205|gb|ACS21272.1| protein of unknown function UPF0054 [Variovorax paradoxus S110] Length = 152 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 20/169 (11%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M++ ++ L LQ A G E H L + + + + E E+++ Sbjct: 1 MALPALS---LSLQFA---RFKGVERHRAALPRHSVTRWIRHAL-------EIDAEITVR 47 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D+ + LN E+RG D TNVL+F S +++ D+VL ++ EA K Sbjct: 48 IVDAEEGQRLNREFRGKDYATNVLTFDYT------QSPMVMADLVLCAPVVASEAKEQRK 101 Query: 121 EFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 H HL++HG LH G+DH + DA ME E IL LGI +PY Sbjct: 102 TLAAHYAHLLVHGTLHAQGWDHETGEADAEAMEAREIEILAGLGIRNPY 150 >gi|297584645|ref|YP_003700425.1| hypothetical protein Bsel_2356 [Bacillus selenitireducens MLS10] gi|297143102|gb|ADH99859.1| protein of unknown function UPF0054 [Bacillus selenitireducens MLS10] Length = 156 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 11/156 (7%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 ++ I E D+ L+ + +V+F+ + I G E+S+ RI+ LN Sbjct: 7 EIDILDETEKLHDDA-LQLIRDVLFSAMKAEDIPMG-------TEVSVSIVTDGRIQELN 58 Query: 72 FEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +YR D+PT+VLSF MLGDI+++ + +++ G FE L Sbjct: 59 RDYREKDRPTDVLSFALHDGEEQIIAPTIPDMLGDIIISLPAVYRQSDEYGHSFERELAF 118 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HGFLHL GYDH ++ D M + +L GI Sbjct: 119 LTVHGFLHLCGYDHENEADEQKMFARQEELLTAYGI 154 >gi|327440938|dbj|BAK17303.1| predicted metal-dependent hydrolase [Solibacillus silvestris StLB046] Length = 161 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------S 98 + E+ E+S+ F + I +N EYR D+PT+V+SF Sbjct: 28 AAEQEGIEDGSEVSVTFVTNEAIHEINREYRDKDQPTDVISFALEEMGEGELQIIGEGIP 87 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +LGDI+++ + +A G FE L L +HGFLHLLGYDH+ +D VM G + +I Sbjct: 88 RILGDIIISTDRTREQAAEYGHTFERELGFLAVHGFLHLLGYDHMTREDEKVMFGKQDTI 147 Query: 159 LEDLGI 164 L+ G+ Sbjct: 148 LQSYGL 153 >gi|309810260|ref|ZP_07704105.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 2503V10-D] gi|312871748|ref|ZP_07731836.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 3008A-a] gi|325912641|ref|ZP_08175024.1| translation metalloprotein YbeY [Lactobacillus iners UPII 60-B] gi|308169532|gb|EFO71580.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 2503V10-D] gi|311092690|gb|EFQ51046.1| translation metalloprotein YbeY [Lactobacillus iners LEAF 3008A-a] gi|325478062|gb|EGC81191.1| translation metalloprotein YbeY [Lactobacillus iners UPII 60-B] Length = 175 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + LI +K K N E+S+ F D +++ +N YRG Sbjct: 5 DISFNDEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVDINKMHEINKNYRG 64 Query: 77 IDKPTNVLSFPTAFASSDGCSSLML---------GDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF + + + GD+ + E++E A F Sbjct: 65 KDRPTDVISFAIEDGIDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 125 YTLVHGYLHLNGYDHIKDDEAEVMFGIQSKVLEEYGLP 162 >gi|227485439|ref|ZP_03915755.1| metal-dependent hydrolase [Anaerococcus lactolyticus ATCC 51172] gi|227236569|gb|EEI86584.1| metal-dependent hydrolase [Anaerococcus lactolyticus ATCC 51172] Length = 152 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 8/156 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L +A + D +R E K + ++ F + E+SL D I L Sbjct: 1 MNLLLANDTKNDLDLDLIRERAE----KTIEEVLRVENFTEN--AEVSLSIVDMETIHRL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFA--SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR +D+PT+VLSFP ++G S +LGDIV+ ++ E +A G E +++ Sbjct: 55 NKEYREVDRPTDVLSFPMDEEGYDNEGNSIFLLGDIVICLDVAENQAKDFGHSLEREMMY 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LI H LHLLGYDH+++ D M E+ ++++LG+ Sbjct: 115 LICHSTLHLLGYDHIEEDDKLEMRSREKEVMKNLGV 150 >gi|194097776|ref|YP_002000817.1| Putative metalloprotease NGO0145 [Neisseria gonorrhoeae NCCP11945] gi|268594133|ref|ZP_06128300.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|193933066|gb|ACF28890.1| Putative metalloprotease NGO0145 [Neisseria gonorrhoeae NCCP11945] gi|268547522|gb|EEZ42940.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|317163557|gb|ADV07098.1| Putative metalloprotease [Neisseria gonorrhoeae TCDC-NG08107] Length = 211 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++ L+ D N +YRG D TNVLSF Sbjct: 72 AERDFYRWAWSALKNEYLR----ADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 127 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 128 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 187 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 188 IMEAEEIRLMRAAGYPNPYRED 209 >gi|34499607|ref|NP_903822.1| hypothetical protein CV_4152 [Chromobacterium violaceum ATCC 12472] gi|46577368|sp|Q7NQI5|RRMF_CHRVO RecName: Full=Probable rRNA maturation factor gi|34105458|gb|AAQ61813.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 168 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 13/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L + + A +R C+ + V ++S+V D+ Sbjct: 18 ELTLDVRSDAAALPPPALIRRACQAALRRDV------------KQAQISIVIVDAAEGRQ 65 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG D TNVLSF L GD+VL ++E EA K H HL Sbjct: 66 LNNDYRGKDYATNVLSFALNEGEPVEGLPLF-GDLVLCAPVVEQEAAEQNKALMAHYAHL 124 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHL G+DH +D +A ME LE I++ LG DPY + Sbjct: 125 LVHGMLHLQGFDHEEDAEAEAMEVLETVIVKQLGYPDPYHEE 166 >gi|310643041|ref|YP_003947799.1| metalloprotease [Paenibacillus polymyxa SC2] gi|309247991|gb|ADO57558.1| Putative metalloprotease [Paenibacillus polymyxa SC2] Length = 165 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 19/169 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQ+A W +E + + E + + L G E++L F + +I L Sbjct: 1 MGLQLA-----WNNEQNDMVINESLITLLNTLLEQAGKAEGVTDGEVALTFVNDDQIHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLMLGDIVLAYEIIEIEAN 116 N +YRGID+PT+VLSF + +LGDI+++ + + ++ Sbjct: 56 NRDYRGIDRPTDVLSFAMKETLDEELEIIYEPTEDNPLNDVPDVLGDIIISVQTAQAQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HGFLHLLGYDH DD M G + ++L +G+ Sbjct: 116 EYGHSIEREIGFLFVHGFLHLLGYDHQDDASEAEMMGKQEAVLAQVGLT 164 >gi|257882778|ref|ZP_05662431.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257886864|ref|ZP_05666517.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257898044|ref|ZP_05677697.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|293571620|ref|ZP_06682641.1| conserved hypothetical protein [Enterococcus faecium E980] gi|294622996|ref|ZP_06701885.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|257818436|gb|EEV45764.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257822918|gb|EEV49850.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257835956|gb|EEV61030.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|291597552|gb|EFF28714.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|291608290|gb|EFF37591.1| conserved hypothetical protein [Enterococcus faecium E980] Length = 158 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ E +E + FA Y E+S+ F D+ I+ + Sbjct: 1 MDITFMDETNQVSEEKMKEIDDLLQFAA--------SYLELPEETEMSVTFMDNAAIQVI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLGK 120 N +YRG D PT+V+SF D +LGDI+++ E +A G Sbjct: 53 NRDYRGKDAPTDVISFALEEEGEDEIPVIFEDGENPLPRVLGDIMISTERAAEQAEAYGH 112 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ L L +HGFLH+ GYDH+ +D M GL++ IL+ G+ Sbjct: 113 SYDRELGFLAVHGFLHINGYDHMTPEDEKEMFGLQKEILDAYGLK 157 >gi|309805177|ref|ZP_07699229.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 09V1-c] gi|329920078|ref|ZP_08276909.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 1401G] gi|308165411|gb|EFO67642.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 09V1-c] gi|328936532|gb|EGG32976.1| translation metalloprotein YbeY [Lactobacillus iners SPIN 1401G] Length = 175 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + LI +K K N E+S+ F + ++I +N YRG Sbjct: 5 DISFNDEVDFFSDTRKNWKTWIEELILSAKKNIKKTNRQEMSINFVNINKIHEINKNYRG 64 Query: 77 IDKPTNVLSFPTAFASSDGCSSLML---------GDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF + + + + GD+ + E++E A F Sbjct: 65 KDRPTDVISFAIEDGTDNDLFAQFIETPDFVEDIGDLFICPEVVEKHATEYETGFYREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH+ D +A VM G++ +LE+ G+ Sbjct: 125 YTLVHGYLHLNGYDHIQDDEAEVMFGIQSKVLEEYGLP 162 >gi|300812188|ref|ZP_07092630.1| translation metalloprotein YbeY [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496824|gb|EFK31904.1| translation metalloprotein YbeY [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 174 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ T + + + L+ +K K+N E+S+ F D R + +N +YR Sbjct: 5 DVSYSDEVGFLTKGDRDWEDWIMQLLLMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +IE + G F+ Sbjct: 65 KDRPTDVISFAIEDGDDGLDLAMFTQDPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HG+LHL GYDH++ +A M G++ ILE+ G+ Sbjct: 125 YTIVHGYLHLNGYDHIEPDEAKEMFGIQGKILEEYGLP 162 >gi|302869293|ref|YP_003837930.1| hypothetical protein Micau_4845 [Micromonospora aurantiaca ATCC 27029] gi|315504232|ref|YP_004083119.1| hypothetical protein ML5_3454 [Micromonospora sp. L5] gi|302572152|gb|ADL48354.1| protein of unknown function UPF0054 [Micromonospora aurantiaca ATCC 27029] gi|315410851|gb|ADU08968.1| protein of unknown function UPF0054 [Micromonospora sp. L5] Length = 157 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 19/161 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + D + V A A L G + ELS++ D + L Sbjct: 1 MSIEIANESGVDVD-------TDAVLAVARHALDEMGV---NPLAELSVLLVDIEYMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP S D G +LGDIVL E+ +A V G Sbjct: 51 NHRWMGGDGPTDVLAFPMDEGSVDHGPGESNPAGGEPALLGDIVLCPEVAAKQAAVAGHS 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLGYDH + ++ M GL+ +L Sbjct: 111 AADELHLLTVHGVLHLLGYDHAEPEEEREMFGLQARLLASW 151 >gi|326389851|ref|ZP_08211415.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus JW 200] gi|325994119|gb|EGD52547.1| protein of unknown function UPF0054 [Thermoanaerobacter ethanolicus JW 200] Length = 159 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D I+L L E V + + VE+S+ F D+ I LN YRGIDKPT+V Sbjct: 13 DAINLEELVEKVIKTVLE------VEEVIDNVEVSVSFVDNEEIRKLNKYYRGIDKPTDV 66 Query: 84 LSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 LSFP A D +GDIV++ E ++ G FE + +L H Sbjct: 67 LSFPLAEFEETYGEVEKIEEDSEEVQPIGDIVISLEKALEQSIEYGHSFEREVAYLTAHS 126 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHLLGYDH +++ +M E ++ L I Sbjct: 127 MLHLLGYDHETEEERKIMREKEEEVMARLNI 157 >gi|330686100|gb|EGG97721.1| translation metalloprotein YbeY [Staphylococcus epidermidis VCU121] Length = 155 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 10/150 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKP 80 I E+V + + F K+ ELS+ F D I+ +N YR DK Sbjct: 4 IDFSDHTELVKDEWYEQIEKLLNFAKQEEQINEDAELSITFVDKSEIQEINKMYRDKDKV 63 Query: 81 TNVLSFPTAFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 T+V+SF D +LGDI++ ++ + ++ G FE L L +HGFL Sbjct: 64 TDVISFALEEDEPDIDMSEFNIPRVLGDIIICTDVAQEQSESYGHSFERELGFLALHGFL 123 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HLLGYDH++++D M G + +IL G+ Sbjct: 124 HLLGYDHMNEEDEKEMFGRQDAILNAYGLT 153 >gi|268319371|ref|YP_003293027.1| hypothetical protein FI9785_888 [Lactobacillus johnsonii FI9785] gi|262397746|emb|CAX66760.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785] Length = 175 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + +SNL+ +K KEN E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVTFLKDSDKDWISWISNLLLSAKKEIHKENAQEMSINFVSSEKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF S D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFMSAFSDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH++D +A +M G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGYDHIEDDEAKIMFGIQGKVLREYGLP 162 >gi|296282477|ref|ZP_06860475.1| metal-dependent hydrolase [Citromicrobium bathyomarinum JL354] Length = 160 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 81/164 (49%), Gaps = 13/164 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L+I VE+ W D + + +++ + +E S++FT ++ L Sbjct: 1 MELEIDVEH--WPDGE-----WDALASRSADAAAQVEPALANARLEASILFTSDAQVHEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 N ++R DKPTNVLSFP G +LGDI LAYE EA G E H Sbjct: 54 NRDWREKDKPTNVLSFPMLERDELIDLAPGGPPALLGDIALAYETCAREAAEKGIPLEAH 113 Query: 126 LVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 HL++HG LHL G DH + DA ME LE L LG+ DPY Sbjct: 114 ASHLVVHGLLHLAGLDHEISPADAQEMEALEVKALALLGLPDPY 157 >gi|78043035|ref|YP_359288.1| hypothetical protein CHY_0427 [Carboxydothermus hydrogenoformans Z-2901] gi|123576940|sp|Q3AEZ6|RRMF_CARHZ RecName: Full=Probable rRNA maturation factor gi|77995150|gb|ABB14049.1| conserved hypothetical protein TIGR00043 [Carboxydothermus hydrogenoformans Z-2901] Length = 143 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 4/109 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+ D++ I++LN EYR D PT+VLSFP A D +LGD+V++ E +A Sbjct: 38 VSIALVDNNYIQSLNREYRQKDVPTDVLSFPLADDKDDE----VLGDVVISLEKAAEQAK 93 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F + L +HG LHLLG+DH ++++ +M E IL LG+ Sbjct: 94 EYGHSFFREVAFLTVHGVLHLLGHDHYEEEETRIMREKEEKILSALGLE 142 >gi|313608753|gb|EFR84572.1| putative metalloprotease [Listeria monocytogenes FSL F2-208] Length = 161 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + E E + L E + + Y E ELSL FT + I + Sbjct: 4 LEIDLLDETKKLPAED--KQLVENILQ------FAAEYLKIEQGTELSLTFTTNEGIREI 55 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N EYR D+ T+V+SF D + MLGDI+++ E E +A G Sbjct: 56 NREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGH 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HG LHLLGYDH++ + VM GL++ +L+ G+ Sbjct: 116 TKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKEVLDAYGLE 160 >gi|218767660|ref|YP_002342172.1| hypothetical protein NMA0717 [Neisseria meningitidis Z2491] gi|26006911|sp|Q9JVS5|RRMF_NEIMA RecName: Full=Probable rRNA maturation factor gi|121051668|emb|CAM07971.1| hypothetical protein NMA0717 [Neisseria meningitidis Z2491] Length = 171 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMLAAGFPNPYQED 169 >gi|256545613|ref|ZP_05472971.1| metalloprotease [Anaerococcus vaginalis ATCC 51170] gi|256398690|gb|EEU12309.1| metalloprotease [Anaerococcus vaginalis ATCC 51170] Length = 164 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 14/170 (8%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M + +++L I E +E+++ E V + + K + E E+SL Sbjct: 1 MIRQIRKKKKMNLIINNETK---EEVNIENYLEKVIREVL-----KLEDIDEKKCEISLS 52 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS------LMLGDIVLAYEIIEIE 114 F D +I LN ++R ID+ T+VLSFP ++ + LMLGD+V+ ++ + Sbjct: 53 FVDEEKIRQLNKDFRSIDRVTDVLSFPIEDFFNEDRENILEKPYLMLGDVVICLDVARKQ 112 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A+ LG FE +++L H LHLLGYDH++D D +M E+ ++++LG+ Sbjct: 113 ADDLGHSFEREVMYLTCHSILHLLGYDHIEDDDKKIMRKREKEVMKNLGV 162 >gi|163747523|ref|ZP_02154873.1| hypothetical protein OIHEL45_01040 [Oceanibulbus indolifex HEL-45] gi|161379201|gb|EDQ03620.1| hypothetical protein OIHEL45_01040 [Oceanibulbus indolifex HEL-45] Length = 181 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 18/172 (10%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D I +E+ W + + L L + +L + E++L+ D RI LN Sbjct: 14 DFDIVIEDDRW-EAVDLERLAHAAAQATLGHL-----GLDAETAEMTLLACDDARIAVLN 67 Query: 72 FEYRGIDKPTNVLSFPTAF--ASSDGCSSLM----------LGDIVLAYEIIEIEANVLG 119 ++RG + TNVLS+P A++ G L LGDI +AYE EA+ Sbjct: 68 EDFRGKARATNVLSWPAEERGAAAPGGDPLPVAPGIDGMLELGDIAMAYETCAAEASAAA 127 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K H+ HLI+HG LHLLGYDH +D DA +MEGLER IL +G +DPY+ + Sbjct: 128 KPLNAHVTHLIVHGLLHLLGYDHENDPDAMLMEGLEREILGKMGYDDPYKEN 179 >gi|307243719|ref|ZP_07525859.1| translation metalloprotein YbeY [Peptostreptococcus stomatis DSM 17678] gi|306492928|gb|EFM64941.1| translation metalloprotein YbeY [Peptostreptococcus stomatis DSM 17678] Length = 153 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 3/148 (2%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 ++ D L + + K + ++ Y ++ E+SL F + I +N +YR IDK Sbjct: 4 IFEDRQDFVKLDQDIMDKIEAVILEVLAYEGYDDDYEVSLSFVSNDEIREINRDYRNIDK 63 Query: 80 PTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 T+VLSFP ++ LGDIV++ E +A G E + L+ H HL Sbjct: 64 VTDVLSFPMYDGEEVDVDFGAISLGDIVISIERAADQAKDFGHSLEREVCFLVCHSMFHL 123 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH+++++A M E +L LGI Sbjct: 124 LGYDHMEEEEAKEMHAKEEDVLSQLGIT 151 >gi|227890110|ref|ZP_04007915.1| metal-dependent hydrolase [Lactobacillus johnsonii ATCC 33200] gi|227849554|gb|EEJ59640.1| metal-dependent hydrolase [Lactobacillus johnsonii ATCC 33200] Length = 175 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + +SNL+ +K KEN E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVTFLKDSDKDWISWISNLLLSAKKEIHKENSQEMSINFVSSKKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF S D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFMSAFSDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH++D +A +M G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGYDHIEDDEAKIMFGIQGKVLREYGLP 162 >gi|1303823|dbj|BAA12479.1| YqfG [Bacillus subtilis] Length = 157 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 18/161 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETL 70 + I E +E+ K V NL+ + ++ E+S+ + I + Sbjct: 5 IDIVDETGSVSEEM----------LKEVENLLQFAAEREGVQDQAEVSVTIVSNDDIHQI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N EYRG D PT+V+SF +LG+I+++ + +A F+ Sbjct: 55 NKEYRGKDAPTDVISFALEEEGEGEIEIVGAEMPPVLGNIIISADRTREQAEEYNHSFKR 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HGFLHLLGYDH+ ++ M ++ +L+ G+ Sbjct: 115 ELGFLAVHGFLHLLGYDHMTKEEEEEMFTKQKELLDAYGLK 155 >gi|239637618|ref|ZP_04678590.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596836|gb|EEQ79361.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 155 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 10/150 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENI-----VELSLVFTDSHRIETLNFEYRGIDKP 80 I E+V + + F K+ ELS+ F D I+ +N YR DK Sbjct: 4 IDFSDHTELVKDEWYEQIEKLLNFAKQQEEISEDAELSITFVDKSEIQEINKMYRDKDKV 63 Query: 81 TNVLSFPTAFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 T+V+SF D +LGDI++ ++ + ++ G FE L L +HGFL Sbjct: 64 TDVISFALEEDEPDIDMSEFDIPRVLGDIIICTDVAQEQSESYGHSFERELGFLALHGFL 123 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HLLGYDH++++D M G + +IL G+ Sbjct: 124 HLLGYDHMNEEDEKEMFGRQDAILNAYGLT 153 >gi|317132157|ref|YP_004091471.1| protein of unknown function UPF0054 [Ethanoligenens harbinense YUAN-3] gi|315470136|gb|ADU26740.1| protein of unknown function UPF0054 [Ethanoligenens harbinense YUAN-3] Length = 164 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 8/150 (5%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + ++ + + ++ F E E+++ F D +I+ LN +YR D T+VLS Sbjct: 15 VKIPSGLRLLVRRCCNATLANEGF--EGSAEVNVTFVDDAQIKELNAQYRHKDTATDVLS 72 Query: 86 FPTA----FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP F + + +LGD+V++ E +A G ++ + L +H LH+LGYD Sbjct: 73 FPMGENGKFDLNPDTGAYVLGDVVISLETATAQAEKYGHSLQHEVAFLTVHSMLHILGYD 132 Query: 142 HVDDK-DACVMEGLERSILEDLGIN-DPYE 169 H +A M E I+ LG D YE Sbjct: 133 HEQGGIEAVRMHEHEDVIMNALGFPRDVYE 162 >gi|189040309|sp|A8M0W3|RRMF_SALAI RecName: Full=Probable rRNA maturation factor Length = 157 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 19/161 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + D + V A A L G + ELS++ D + L Sbjct: 1 MSIEIANESGVDID-------TDAVLAVARHALDEMGV---NQLAELSVLLVDIDYMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP S D G +LGDIVL E+ +A G Sbjct: 51 NHRWMGGDGPTDVLAFPMDEGSVDHGPGESAVAGTEPALLGDIVLCPEVAAKQAATAGHS 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLGYDH + + M L+ +L Sbjct: 111 AADELHLLTVHGVLHLLGYDHAEPDEEREMFALQARLLAGW 151 >gi|167972975|ref|ZP_02555252.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167973948|ref|ZP_02556225.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167975657|ref|ZP_02557934.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167988132|ref|ZP_02569803.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168362746|ref|ZP_02695920.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867954|ref|ZP_03079951.1| putative metalloprotease [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273580|ref|ZP_03206116.1| putative metalloprotease [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554156|ref|YP_002284937.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550362|ref|ZP_03771311.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551596|ref|ZP_03772542.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|226702100|sp|B5ZBZ7|RRMF_UREU1 RecName: Full=Probable rRNA maturation factor gi|171903176|gb|EDT49465.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209105|gb|EDU06148.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019077|gb|EDU57117.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998095|gb|EDU67192.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659878|gb|EDX53258.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660350|gb|EDX53610.1| putative metalloprotease [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250100|gb|EDY74880.1| putative metalloprotease [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541657|gb|ACI59886.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379411|gb|EEH01776.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379516|gb|EEH01878.1| conserved hypothetical protein TIGR00043 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 155 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 10/146 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 +++ DEI+L+ ++ ++ I K F + + F D I+ +N +YR D Sbjct: 11 SVFNDEIYLQRFEQIANLISIKLNIDKERFFECH-------FVDEKTIQEINRDYRNKDY 63 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T+V+SF + +LG++ + Y+ + +A G FE L L HG LHLLG Sbjct: 64 ITDVISFAF---DDGEIITPLLGEMYICYQKVVNQAKEFGHSFERELCFLFTHGLLHLLG 120 Query: 140 YDHVDDKDACVMEGLERSILEDLGIN 165 YDH++ ++ +M GL+ IL +L I Sbjct: 121 YDHIEVEEEKIMFGLQDEILNELNIT 146 >gi|227551970|ref|ZP_03982019.1| metal-dependent hydrolase [Enterococcus faecium TX1330] gi|257895438|ref|ZP_05675091.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|293378305|ref|ZP_06624474.1| metalloprotein, YbeY family [Enterococcus faecium PC4.1] gi|293568656|ref|ZP_06679971.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|227178875|gb|EEI59847.1| metal-dependent hydrolase [Enterococcus faecium TX1330] gi|257832003|gb|EEV58424.1| conserved hypothetical protein [Enterococcus faecium Com12] gi|291588616|gb|EFF20449.1| conserved hypothetical protein [Enterococcus faecium E1071] gi|292643169|gb|EFF61310.1| metalloprotein, YbeY family [Enterococcus faecium PC4.1] Length = 158 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------- 97 + Y E+S+ F D+ I+ +N +YRG D PT+V+SF D Sbjct: 27 AASYLELPEETEMSVTFMDNAAIQVINRDYRGKDAPTDVISFALEEEGEDEIPVIFEDGE 86 Query: 98 ---SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 +LGDI+++ E +A G ++ L L +HGFLH+ GYDH+ +D M GL Sbjct: 87 NPLPRVLGDIMISTERAAEQAEAYGHSYDRELGFLAVHGFLHINGYDHMTPEDEKEMFGL 146 Query: 155 ERSILEDLGIN 165 ++ IL+ G+ Sbjct: 147 QKEILDAYGLK 157 >gi|315303203|ref|ZP_07873860.1| putative metalloprotease [Listeria ivanovii FSL F6-596] gi|313628430|gb|EFR96906.1| putative metalloprotease [Listeria ivanovii FSL F6-596] Length = 161 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 22/167 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS--KGYFVKENIVELSLVFTDSHRIE 68 L++ + E E K V N++ Y + ELSL FT + I Sbjct: 4 LEIDLIDETKELPAED----------KKLVENILQFXXDYLKMDQGTELSLTFTTNEGIR 53 Query: 69 TLNFEYRGIDKPTNVLSFP----------TAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 +N +YR D+ T+V+SF +A D + MLGDI+++ E E +A Sbjct: 54 EINRDYRNKDQATDVISFALEELGEGETEIDWADFDLETPKMLGDIIISTEKAEEQAKEY 113 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 114 GHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE 160 >gi|295424888|ref|ZP_06817603.1| metal-dependent hydrolase [Lactobacillus amylolyticus DSM 11664] gi|295065454|gb|EFG56347.1| metal-dependent hydrolase [Lactobacillus amylolyticus DSM 11664] Length = 185 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 86/177 (48%), Gaps = 17/177 (9%) Query: 1 MSVKKVNLPRLD-LQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVEL 57 ++ K+ ++D ++I + DE+ + + + L+ +K K+N +E+ Sbjct: 2 LTKKRTQNAKMDPIEIT-----YNDEVGFLNDDKRCWKDWIEKLLLLTKTKIGKKNNLEM 56 Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAY 108 S+ F + R +N +YR D+PT+V+SF D +GD+ + Sbjct: 57 SINFVNEDRSHEINLKYRDKDRPTDVISFAIEDGEDDLDMAAFADDPDFQEDIGDLFMCP 116 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +I+ + G F+ + ++HGFLHL GYDH+ ++A M G++ +LE+ G+ Sbjct: 117 SVIKRHSVEYGTGFDREFGYTVVHGFLHLNGYDHIKPEEAKEMFGIQGKVLEEYGLP 173 >gi|167035831|ref|YP_001671062.1| putative metalloprotease [Pseudomonas putida GB-1] gi|189040216|sp|B0KJW3|RRMF_PSEPG RecName: Full=Probable rRNA maturation factor gi|166862319|gb|ABZ00727.1| protein of unknown function UPF0054 [Pseudomonas putida GB-1] Length = 157 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LD+Q +A D+ R CE+ + ++ E+++ D Sbjct: 3 ELDIQ-RATDAAAPDDAAFRRWCELALRQRTAD------------SEMTIRLVDEAEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YR D TNVLSFP A D +LGD+V+ ++E EA GK E H HL Sbjct: 50 LNHTYRHKDYATNVLSFP-ADVPDDLLDIPLLGDLVICVAVVEREAAEQGKSLEAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D++A MEGLER +L +LG DPY D Sbjct: 109 VMHGCLHLLGYDHIEDEEAEEMEGLERELLAELGHPDPYADD 150 >gi|145595964|ref|YP_001160261.1| putative metalloprotease [Salinispora tropica CNB-440] gi|189040145|sp|A4XAD4|RRMF_SALTO RecName: Full=Probable rRNA maturation factor gi|145305301|gb|ABP55883.1| protein of unknown function UPF0054 [Salinispora tropica CNB-440] Length = 157 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 19/161 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ D + V A A L G + ELS++ D + L Sbjct: 1 MSIEIANESGADVD-------TDAVLAVARHALDEMGV---NQLAELSVLLVDIDYMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP S D G +LGDIVL E+ +A G Sbjct: 51 NHRWMGGDGPTDVLAFPMDEGSVDHGPGENAAAGAEPALLGDIVLCPEVAAKQAVTAGHS 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLGYDH + ++ M L+ +L Sbjct: 111 TADELHLLTVHGVLHLLGYDHAEPEEEREMFALQARLLASW 151 >gi|167758251|ref|ZP_02430378.1| hypothetical protein CLOSCI_00589 [Clostridium scindens ATCC 35704] gi|167664148|gb|EDS08278.1| hypothetical protein CLOSCI_00589 [Clostridium scindens ATCC 35704] Length = 164 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 17/155 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E L CE + + + + Y E+SL+ T + I +N ++RGID+PT+VL Sbjct: 10 EARLPIECEKIARQVIETTLD--YAGCPYEWEVSLLLTQNEEIRKMNRDFRGIDRPTDVL 67 Query: 85 SFPTAFASSDG---------------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP G LMLGDIV++ E + +A G L Sbjct: 68 SFPMTDYPVPGQFGFLEESDDCFHPESGELMLGDIVISKEKVLSQAEEFGHSALREYAFL 127 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I H LHL+GYDH+ D++ +ME ++ I+E L I Sbjct: 128 IAHSVLHLIGYDHMQDEERQIMERKQKEIMERLNI 162 >gi|149202104|ref|ZP_01879077.1| hypothetical protein RTM1035_12293 [Roseovarius sp. TM1035] gi|149144202|gb|EDM32233.1| hypothetical protein RTM1035_12293 [Roseovarius sp. TM1035] Length = 162 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 16/165 (9%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 + +E+ W L L E + +L + E+S++ D RI LN + Sbjct: 4 DVVIEDDRW-QAAALEDLAERAARATLEHLA-----MDPEDWEISILACDDARIAVLNED 57 Query: 74 YRGIDKPTNVLSFPTAFASSD----------GCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 +R +PTNVLS+P+ +++ LGDI +A++ EA K Sbjct: 58 FRDKPQPTNVLSWPSEERAAEVSGVRPAPPMPSPDPELGDIAIAWDTCVREAAEGEKPLA 117 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HLI+H LHLLGYDHV D+DA +ME E IL LG++DPY Sbjct: 118 DHVTHLIVHAVLHLLGYDHVRDQDATLMETTEVEILGKLGVSDPY 162 >gi|284990192|ref|YP_003408746.1| hypothetical protein Gobs_1659 [Geodermatophilus obscurus DSM 43160] gi|284063437|gb|ADB74375.1| protein of unknown function UPF0054 [Geodermatophilus obscurus DSM 43160] Length = 167 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 15/157 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DE L +C V A+ N + ELS++ D+ + TL Sbjct: 1 MPVEVANESEIAVDESSLAAICTYVLAEMGVN----------PMAELSVLCVDADYMSTL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + + G PT+VL+FP +LGD+VL + +A G ++ Sbjct: 51 HERWMGEKGPTDVLAFPMDELDTGRPDEPDPGPALLGDVVLCPSVAIRQARAAGHTMDDE 110 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L+ L HG LHLLGYDH++ + M GL+ +L+ Sbjct: 111 LILLATHGVLHLLGYDHMEPDEEKEMFGLQSKLLDGW 147 >gi|332530325|ref|ZP_08406271.1| putative metal-dependent hydrolase [Hylemonella gracilis ATCC 19624] gi|332040311|gb|EGI76691.1| putative metal-dependent hydrolase [Hylemonella gracilis ATCC 19624] Length = 169 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 16/165 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 LP L L + NA+ E H + L + + + + + E+++ + Sbjct: 20 TELPDLTLDLQFGNAV--PEAHKKLLSKARVTRWMRMALLR-------DAEITVRVVGAA 70 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN +YR D TNVL+F ++ D+VL ++ EA K E H Sbjct: 71 EGRALNRDYRNKDYATNVLTFDYT------KEPVVTADLVLCAPVVAKEAKEQNKSPEEH 124 Query: 126 LVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH + DA ME LE ++E +G+ +PYE Sbjct: 125 YAHLLVHGTLHAQGYDHETSETDALEMEALEVLLMEGMGLGNPYE 169 >gi|312127664|ref|YP_003992538.1| hypothetical protein Calhy_1452 [Caldicellulosiruptor hydrothermalis 108] gi|311777683|gb|ADQ07169.1| protein of unknown function UPF0054 [Caldicellulosiruptor hydrothermalis 108] Length = 158 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 12/161 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +++ N I F++E E+S++ D++ I+ LN Sbjct: 1 MKIFIQNQQ--DKVDVDQHISKIIEESIVNTI--KVFLEEENFEISVLIVDNNFIKELNR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC--------SSLMLGDIVLAYEIIEIEANVLGKEFEN 124 YR ++K T+VLSFP + + LGDIV++ E +A G E Sbjct: 57 NYRNVNKETDVLSFPIFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAKEFGHSLER 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 117 EVAYLTVHSVLHLLGFDHIEEDDRKVMRKYEEQILDSMGLT 157 >gi|325133946|gb|EGC56602.1| hypothetical protein TIGR00043 [Neisseria meningitidis M13399] Length = 171 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMRAAGFPNPYQED 169 >gi|225075411|ref|ZP_03718610.1| hypothetical protein NEIFLAOT_00416 [Neisseria flavescens NRL30031/H210] gi|224953229|gb|EEG34438.1| hypothetical protein NEIFLAOT_00416 [Neisseria flavescens NRL30031/H210] Length = 171 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 2/144 (1%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 T ++ + + + ++SL+ D N +YRG D TNVLSF Sbjct: 26 TAADLPSERDFYRWVWSALKNEYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALN 85 Query: 90 FAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 D S + GD+V+ +++ EA GK E H HL IHG LHL+GYDH++D + Sbjct: 86 EGEILPDQFSDGLYGDLVICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDE 145 Query: 148 ACVMEGLERSILEDLGINDPYEVD 171 A +ME E ++ G +PY+ D Sbjct: 146 AEIMEAEEIRLMLAAGFPNPYQED 169 >gi|310815236|ref|YP_003963200.1| Putative metalloprotease [Ketogulonicigenium vulgare Y25] gi|308753971|gb|ADO41900.1| Putative metalloprotease [Ketogulonicigenium vulgare Y25] Length = 165 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 17/170 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ +E W ++ + +E+SL+ + RI L Sbjct: 1 MNVDCLIEETRW-------HAVDLDALAVKAAAGVAARLQLPADLEISLLACNDARIAEL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS----------SDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N ++RG KPTNVLS+P+ +GDI +A+E EA+ GK Sbjct: 54 NADFRGKPKPTNVLSWPSEERGARTAGDMPMLPQAGDDPEIGDIAIAFETCAREADEGGK 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 + H+ HL++HG LHLLG+DH D+DA +MEGLE IL +GI DPY Sbjct: 114 ALDVHVTHLLVHGCLHLLGFDHERDEDAALMEGLETEILGKMGIADPYSD 163 >gi|237744342|ref|ZP_04574823.1| metal-binding protein [Fusobacterium sp. 7_1] gi|256027792|ref|ZP_05441626.1| metal-binding protein [Fusobacterium sp. D11] gi|289765747|ref|ZP_06525125.1| metal-binding protein [Fusobacterium sp. D11] gi|229431571|gb|EEO41783.1| metal-binding protein [Fusobacterium sp. 7_1] gi|289717302|gb|EFD81314.1| metal-binding protein [Fusobacterium sp. D11] Length = 163 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + ++ + LSL+ TD+ I+ +N EYR D PT+V+SF Sbjct: 33 IKKVLELEEIESNRPLYLSLLLTDNRNIQVINREYRDKDAPTDVISFAYHETEDFNIGPY 92 Query: 100 M-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDI+++ E +E +A+ FE +++ HG LH+LGYDH++++D +M E +I Sbjct: 93 DTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMREREEAI 152 Query: 159 LEDLGINDPYE 169 L G Y+ Sbjct: 153 LFSFGYTRDYK 163 >gi|221064957|ref|ZP_03541062.1| protein of unknown function UPF0054 [Comamonas testosteroni KF-1] gi|220709980|gb|EED65348.1| protein of unknown function UPF0054 [Comamonas testosteroni KF-1] Length = 152 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 13/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 LQ++++ +G E++ V+ I V E+++ D+ LN Sbjct: 6 LQLSLQ---FGPSAEAAAHRELLSRSRVTRWIRHALAVD---AEITVRIVDAEEGRKLNR 59 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EYR D TNVL+F ++ D+VL ++E EA K E H HL++H Sbjct: 60 EYRQKDYATNVLTFDYQ------QEPTVMADLVLCAPVVEREAQEQNKTLEEHYAHLLVH 113 Query: 133 GFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 G LH G+DH ++DA ME E I++++G DPY Sbjct: 114 GTLHAQGWDHETSEEDAEEMEAYETDIMKEMGYEDPYA 151 >gi|264680424|ref|YP_003280334.1| metal-dependent hydrolase [Comamonas testosteroni CNB-2] gi|262210940|gb|ACY35038.1| putative metal-dependent hydrolase [Comamonas testosteroni CNB-2] Length = 152 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 13/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 LQ++++ +G E++ V+ I V E+++ D+ LN Sbjct: 6 LQLSLQ---FGPSAEAAAHRELLSRSRVTRWIRHALAVD---AEITVRIVDAEEGRKLNR 59 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EYR D TNVL+F ++ D+VL ++E EA K E H HL++H Sbjct: 60 EYRKKDYATNVLTFDYQ------QEPTVMADLVLCAPVVEREAQEQNKSLEEHYAHLLVH 113 Query: 133 GFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 G LH G+DH ++DA ME E I++++G DPY Sbjct: 114 GTLHAQGWDHETSEEDAEEMEAYETDIMKEMGYEDPYA 151 >gi|255521280|ref|ZP_05388517.1| putative metalloprotease [Listeria monocytogenes FSL J1-175] Length = 130 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 10/129 (7%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF----------ASSDGC 96 Y E ELSL FT + I +N EYR D+ T+V+SF D Sbjct: 1 EYLKIEQGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLE 60 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + MLGDI+++ E E +A G L L +HG LHLLGYDH++ + +M GL++ Sbjct: 61 TPRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQK 120 Query: 157 SILEDLGIN 165 +L+ G+ Sbjct: 121 EVLDAYGLE 129 >gi|240122830|ref|ZP_04735786.1| hypothetical protein NgonP_02615 [Neisseria gonorrhoeae PID332] gi|268681445|ref|ZP_06148307.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268621729|gb|EEZ54129.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] Length = 171 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + GY ++ L+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKSGYLR----ADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 88 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|330469595|ref|YP_004407338.1| metal-binding heat shock protein [Verrucosispora maris AB-18-032] gi|328812566|gb|AEB46738.1| metal-binding heat shock protein [Verrucosispora maris AB-18-032] Length = 157 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 19/161 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + D + V A A L G + ELS++ D + L Sbjct: 1 MSIEIANESGVAVD-------TDAVLAVARHALDEMGV---NPLAELSVLLVDVGYMTEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP S D G +LGDIVL E+ +A G Sbjct: 51 NHRWMGGDGPTDVLAFPMDEGSIDHGPGENAAVGGEPALLGDIVLCPEVAAKQAATAGHS 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++ L L +HG LHLLGYDH + ++ M GL+ +L Sbjct: 111 ADDELHLLTVHGVLHLLGYDHAEPEEEREMFGLQARLLSSW 151 >gi|302871925|ref|YP_003840561.1| hypothetical protein COB47_1283 [Caldicellulosiruptor obsidiansis OB47] gi|302574784|gb|ADL42575.1| protein of unknown function UPF0054 [Caldicellulosiruptor obsidiansis OB47] Length = 158 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 12/161 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +V+N + F++E E+S++ D++ I+ LN Sbjct: 1 MKIFIQNQQ--DKVDVDEHISKIIEDSVANTL--KIFLQEENFEVSVLIVDNNFIKELNR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC--------SSLMLGDIVLAYEIIEIEANVLGKEFEN 124 YR ++K T+VLSFP + + LGDIV++ E +A G E Sbjct: 57 NYRNVNKETDVLSFPIFEFKNGQLQEDIVVVEDEIPLGDIVISIEKALQQAKEFGHSLER 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 117 EVAYLTVHSVLHLLGFDHIEEDDRKVMRKYEEQILDSMGLT 157 >gi|67920493|ref|ZP_00514013.1| Protein of unknown function UPF0054 [Crocosphaera watsonii WH 8501] gi|67857977|gb|EAM53216.1| Protein of unknown function UPF0054 [Crocosphaera watsonii WH 8501] Length = 174 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 12/164 (7%) Query: 13 LQIAVENALWGDEIH---LRTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRI 67 +++ +++ W + + + + F + EL+L T I Sbjct: 11 IELNIQDVFWVNSEQRTIANPISPQTWKQWFQTWCKTLGFHLPVASNYELTLRLTGDKEI 70 Query: 68 ETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 ++LN +YR ++PT+VL+F P D L LGDI+++ E +A Sbjct: 71 QSLNAQYRQKNQPTDVLAFATLEWDFPVVTPPEDLLEPLYLGDIIISVETARKQAQQQDH 130 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L HGFLHLLG+DH D+ M + ++L +G+ Sbjct: 131 PLKRELPWLATHGFLHLLGWDHPDEPSLEEMLQQQETLLRLVGL 174 >gi|16803505|ref|NP_464990.1| putative metalloprotease [Listeria monocytogenes EGD-e] gi|47095416|ref|ZP_00233026.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 1/2a F6854] gi|224500515|ref|ZP_03668864.1| putative metalloprotease [Listeria monocytogenes Finland 1988] gi|224501595|ref|ZP_03669902.1| putative metalloprotease [Listeria monocytogenes FSL R2-561] gi|254827753|ref|ZP_05232440.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829776|ref|ZP_05234431.1| putative metalloprotease [Listeria monocytogenes 10403S] gi|254898369|ref|ZP_05258293.1| putative metalloprotease [Listeria monocytogenes J0161] gi|254912139|ref|ZP_05262151.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936467|ref|ZP_05268164.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284801852|ref|YP_003413717.1| putative metalloprotease [Listeria monocytogenes 08-5578] gi|284994994|ref|YP_003416762.1| putative metalloprotease [Listeria monocytogenes 08-5923] gi|26006921|sp|Q8Y747|RRMF_LISMO RecName: Full=Probable rRNA maturation factor gi|16410894|emb|CAC99543.1| lmo1465 [Listeria monocytogenes EGD-e] gi|47016237|gb|EAL07160.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 1/2a F6854] gi|258600132|gb|EEW13457.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609059|gb|EEW21667.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057414|gb|ADB68355.1| putative metalloprotease [Listeria monocytogenes 08-5578] gi|284060461|gb|ADB71400.1| putative metalloprotease [Listeria monocytogenes 08-5923] gi|293590110|gb|EFF98444.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 161 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + E DE + L E + + Y E ELSL FT + I + Sbjct: 4 LEIDLLDETKNLLDED--KQLVENILQ------FAAEYLKIEQGTELSLTFTTNEGIREI 55 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N EYR D+ T+V+SF D + MLGDI+++ E E +A G Sbjct: 56 NREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGH 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HG LHLLGYDH++ + VM GL++ +L+ G+ Sbjct: 116 TKARELGFLAVHGLLHLLGYDHMEPDEEKVMFGLQKEVLDAYGLE 160 >gi|291544276|emb|CBL17385.1| conserved hypothetical protein TIGR00043 [Ruminococcus sp. 18P13] Length = 166 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 7/138 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 ++ + +++ +F + E+S+ F + I LN YR D T+VLSFP Sbjct: 22 RLLIRRCCQAVLATEHF--DRDAEVSVSFVSNQEIRNLNKIYRNKDSVTDVLSFPLLSDG 79 Query: 93 ----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKD 147 + ++LGD+V++ E +A+ G E + L +H LHLLGYDH D Sbjct: 80 KADVNQETGYVLLGDVVISLETAFKQAHNFGHSLEREVGFLTVHSMLHLLGYDHETSPLD 139 Query: 148 ACVMEGLERSILEDLGIN 165 M E ++LE LGI Sbjct: 140 ERKMREKEEAVLEKLGIA 157 >gi|72161249|ref|YP_288906.1| metalloprotease [Thermobifida fusca YX] gi|123760864|sp|Q47RN4|RRMF_THEFY RecName: Full=Probable rRNA maturation factor gi|71914981|gb|AAZ54883.1| Protein of unknown function UPF0054 [Thermobifida fusca YX] Length = 155 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + +A E+ + DE L L + + ELS++ D + L Sbjct: 1 MSIDVANESGVPADEERLARLARYILDA----------LRVHPLAELSVLLVDEEPMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC----SSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + + PT+VLSFP +LGD+V+ ++ +A G ++ + Sbjct: 51 HVRWMNEPGPTDVLSFPMDELRPGAPGRTSEPGILGDVVICPQVAARQAERAGHSMQDEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L HG LHLLGYDH + + M L+ +L Sbjct: 111 DLLCTHGILHLLGYDHAEPDEHREMFSLQNELLAGW 146 >gi|326803484|ref|YP_004321302.1| translation metalloprotein YbeY [Aerococcus urinae ACS-120-V-Col10a] gi|326651189|gb|AEA01372.1| translation metalloprotein YbeY [Aerococcus urinae ACS-120-V-Col10a] Length = 158 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 8/130 (6%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------ 97 + E+S I +N +YRG D+PT+V+SF S Sbjct: 27 AAAKRLELNRETEMSATIVHDDEIHAINRDYRGKDRPTDVISFAINDESEGDSPITEWPE 86 Query: 98 --SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LGD++++ + + +A E L L HGFLHL GYDH++ +D VM GL+ Sbjct: 87 DLPYELGDLIISLDTAKRQAEEYNHSLERELGFLACHGFLHLNGYDHIEPEDEKVMFGLQ 146 Query: 156 RSILEDLGIN 165 R IL+ G+ Sbjct: 147 REILDAYGLK 156 >gi|46907693|ref|YP_014082.1| metalloprotease [Listeria monocytogenes serotype 4b str. F2365] gi|47093470|ref|ZP_00231233.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 4b H7858] gi|226224066|ref|YP_002758173.1| hypothetical protein Lm4b_01475 [Listeria monocytogenes Clip81459] gi|254824476|ref|ZP_05229477.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852090|ref|ZP_05241438.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254932650|ref|ZP_05266009.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|300765608|ref|ZP_07075587.1| hypothetical protein LMHG_12515 [Listeria monocytogenes FSL N1-017] gi|59799121|sp|Q71ZK5|RRMF_LISMF RecName: Full=Probable rRNA maturation factor gi|259646403|sp|C1KVB2|RRMF_LISMC RecName: Full=Probable rRNA maturation factor gi|46880962|gb|AAT04259.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes serotype 4b str. F2365] gi|47018146|gb|EAL08916.1| conserved hypothetical protein TIGR00043 [Listeria monocytogenes str. 4b H7858] gi|225876528|emb|CAS05237.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605389|gb|EEW17997.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293584209|gb|EFF96241.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293593714|gb|EFG01475.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300513709|gb|EFK40777.1| hypothetical protein LMHG_12515 [Listeria monocytogenes FSL N1-017] gi|328465508|gb|EGF36737.1| metal-binding heat shock protein [Listeria monocytogenes 1816] gi|328474977|gb|EGF45771.1| metal-binding heat shock protein [Listeria monocytogenes 220] gi|332311906|gb|EGJ25001.1| Putative rRNA maturation factor [Listeria monocytogenes str. Scott A] Length = 161 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + E DE + L E + + Y E ELSL FT + I + Sbjct: 4 LEIDLLDETKNLLDED--KQLVENILQ------FAAEYLKIEQGTELSLTFTTNEGIREI 55 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N EYR D+ T+V+SF D + MLGDI+++ E E +A G Sbjct: 56 NREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGH 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 116 TKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE 160 >gi|319943042|ref|ZP_08017325.1| metal-dependent hydrolase [Lautropia mirabilis ATCC 51599] gi|319743584|gb|EFV95988.1| metal-dependent hydrolase [Lautropia mirabilis ATCC 51599] Length = 187 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 16/161 (9%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 RL LQI ++ + E+ + V + E EL L F Sbjct: 40 RLSLQIQFDDTVDPAELPA---SRPQLRRWVQAAL-------EADAELVLRFVGREESRQ 89 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +YRG D+ TNVL+F A ++ DIV+ +++ EA+ K NHL HL Sbjct: 90 LNHQYRGKDRSTNVLTFDYAH------EPVVQADIVICLPVLQDEAHTQNKPLRNHLAHL 143 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +IHG LH G DH+ D++A ME E +L I+DPY + Sbjct: 144 VIHGVLHAHGMDHLTDEEAAEMESREIELLHRFRIDDPYRL 184 >gi|171464143|ref|YP_001798256.1| protein of unknown function UPF0054 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193681|gb|ACB44642.1| protein of unknown function UPF0054 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 157 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 82/172 (47%), Gaps = 20/172 (11%) Query: 1 MSVKKVNL-PRL--DLQIAVENALWGDEIHLRTLCE-VVFAKAVSNLISKGYFVKENIVE 56 MS + + P+L DLQ A E L + + K V + G Sbjct: 1 MSTNRKTMSPKLVIDLQYASATI----ESTLGKIASPTLMKKWVKSATPLGGL------- 49 Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++L F ++ + LN +R D TNVL+FP A + +D + DI+ +++ EA Sbjct: 50 ITLRFVNTTEGKKLNLAFRQKDYATNVLTFPYALSKNDLAA-----DIIFCLPVLQKEAK 104 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K + HL HLI+HG LH GYDH KDA ME LE ILE LG +PY Sbjct: 105 EQDKLLKAHLAHLIVHGCLHAQGYDHELTKDAKKMEALEIHILEKLGFANPY 156 >gi|317495248|ref|ZP_07953618.1| hypothetical protein HMPREF0432_00220 [Gemella moribillum M424] gi|316914670|gb|EFV36146.1| hypothetical protein HMPREF0432_00220 [Gemella moribillum M424] Length = 157 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 7/132 (5%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + +K + I E+SL F I+ +N +YRG D PT+V+SF D + Sbjct: 24 LLKYAAKHENINTKITEMSLSFVSKEEIQEINRDYRGKDVPTDVISFALNDEIEDEVHII 83 Query: 100 ML-------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 L GDI++ +I +A F+ + L +HGFLHLLGYDH++++D M Sbjct: 84 GLEDEFNSIGDIIICVDIAREQAQEYNHSFDREIGFLAVHGFLHLLGYDHMNEEDEKEMF 143 Query: 153 GLERSILEDLGI 164 + +ILE+ G+ Sbjct: 144 DKQEAILEEFGL 155 >gi|261378228|ref|ZP_05982801.1| putative metalloprotease [Neisseria cinerea ATCC 14685] gi|269145304|gb|EEZ71722.1| putative metalloprotease [Neisseria cinerea ATCC 14685] Length = 171 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SD 94 + + ++SL+ D N +YRG D TNVLSF D Sbjct: 33 KRDFYRWAWSALKDEYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPD 92 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 S + GD+V+ +++ EA GK E H HL IHG LHL+GYDH++D +A +ME Sbjct: 93 QFSDGLYGDLVICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAE 152 Query: 155 ERSILEDLGINDPYEVD 171 E ++ G +PY+ D Sbjct: 153 EIRLMLAAGFPNPYQED 169 >gi|261855782|ref|YP_003263065.1| hypothetical protein Hneap_1182 [Halothiobacillus neapolitanus c2] gi|261836251|gb|ACX96018.1| protein of unknown function UPF0054 [Halothiobacillus neapolitanus c2] Length = 161 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 7/138 (5%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---- 94 V + V L++ F D +LN +YR TNVLSF Sbjct: 26 WVEAALDAAN--HWQSVALTVRFVDEEEGLSLNQQYRHKKYATNVLSFSYDAPELPEDMA 83 Query: 95 -GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 G + LGD+++ ++ EA K H HL++HG LHLLGYDH +A ME Sbjct: 84 SGDEPVYLGDLLICMPVVLNEAASQNKIPATHTAHLVVHGVLHLLGYDHEASAEADQMEQ 143 Query: 154 LERSILEDLGINDPYEVD 171 +E ++ LG +PY D Sbjct: 144 IEVDAMQKLGFENPYSAD 161 >gi|85374528|ref|YP_458590.1| metal-dependent hydrolase [Erythrobacter litoralis HTCC2594] gi|122544125|sp|Q2N948|RRMF_ERYLH RecName: Full=Probable rRNA maturation factor gi|84787611|gb|ABC63793.1| predicted metal-dependent hydrolase [Erythrobacter litoralis HTCC2594] Length = 161 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 80/164 (48%), Gaps = 13/164 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L+I +E+ W D E + A + +E S++FT ++ L Sbjct: 1 MKLEIEIEH--WPDGE-----WESITGGAAKATRDVEPALAHARLETSVLFTSDEQVHVL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS-----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 N E+R DKPTNVLSFP MLGDI LAYE EA G E H Sbjct: 54 NREWRERDKPTNVLSFPMLDRDRLRALEPEGPPEMLGDIALAYETCAREAEEKGISLEAH 113 Query: 126 LVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 HLI+HG LHL G+DHVD D A ME LE + L LGI DPY Sbjct: 114 ATHLIVHGLLHLAGHDHVDSDAQAEEMEALEIAALAKLGIADPY 157 >gi|74318722|ref|YP_316462.1| hypothetical protein Tbd_2704 [Thiobacillus denitrificans ATCC 25259] gi|123611152|sp|Q3SFF3|RRMF_THIDA RecName: Full=Probable rRNA maturation factor gi|74058217|gb|AAZ98657.1| Protein of unknown function UPF0054 [Thiobacillus denitrificans ATCC 25259] Length = 147 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 15/157 (9%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 +L++AV+ A D++ R A A+ E+ E+++ D+ + LN Sbjct: 4 ELRLAVQFASGADDLPSRAQIRRWVAAAL-----------EHDAEITVRIVDADEAQALN 52 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YR D NVL+F + +L+ GD+V+ ++E EA GK +H H+ + Sbjct: 53 RAYRDKDYVPNVLTFEYGEIAP----ALLGGDVVICAPVVEREAREQGKPLGHHYAHMTV 108 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HG LHL GYDHVD DA ME E +IL+ I PY Sbjct: 109 HGVLHLQGYDHVDAADAERMETREAAILKRFHIPHPY 145 >gi|319639195|ref|ZP_07993946.1| metalloprotease [Neisseria mucosa C102] gi|317399379|gb|EFV80049.1| metalloprotease [Neisseria mucosa C102] Length = 171 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA + L + E F + + + Y ++S Sbjct: 3 RAKKYPFLSLQRQRFHLNFENA--SSAVDLPS--ERNFYRWAWSALKNEY----RRADIS 54 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF D S + GD+V+ +++ EA+ Sbjct: 55 LILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQFSDGLYGDLVICPQVVLKEAS 114 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 115 EQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 169 >gi|227519870|ref|ZP_03949919.1| metalloprotease [Enterococcus faecalis TX0104] gi|229545167|ref|ZP_04433892.1| metalloprotease [Enterococcus faecalis TX1322] gi|229549416|ref|ZP_04438141.1| metalloprotease [Enterococcus faecalis ATCC 29200] gi|255972120|ref|ZP_05422706.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255975187|ref|ZP_05425773.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256617031|ref|ZP_05473877.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256763105|ref|ZP_05503685.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256853773|ref|ZP_05559138.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256956689|ref|ZP_05560860.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256961294|ref|ZP_05565465.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|257082010|ref|ZP_05576371.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257084561|ref|ZP_05578922.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257087443|ref|ZP_05581804.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257416650|ref|ZP_05593644.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257419866|ref|ZP_05596860.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257421946|ref|ZP_05598936.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|293383578|ref|ZP_06629488.1| putative metalloprotease [Enterococcus faecalis R712] gi|293387309|ref|ZP_06631865.1| putative metalloprotease [Enterococcus faecalis S613] gi|300860151|ref|ZP_07106238.1| translation metalloprotein YbeY [Enterococcus faecalis TUSoD Ef11] gi|307277154|ref|ZP_07558258.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX2134] gi|307285806|ref|ZP_07565940.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0860] gi|307287709|ref|ZP_07567752.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0109] gi|307290536|ref|ZP_07570448.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0411] gi|312906128|ref|ZP_07765140.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 512] gi|312909474|ref|ZP_07768329.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 516] gi|312953491|ref|ZP_07772331.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0102] gi|227072664|gb|EEI10627.1| metalloprotease [Enterococcus faecalis TX0104] gi|229305653|gb|EEN71649.1| metalloprotease [Enterococcus faecalis ATCC 29200] gi|229309712|gb|EEN75699.1| metalloprotease [Enterococcus faecalis TX1322] gi|255963138|gb|EET95614.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968059|gb|EET98681.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256596558|gb|EEU15734.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256684356|gb|EEU24051.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256710716|gb|EEU25759.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|256947185|gb|EEU63817.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256951790|gb|EEU68422.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256990040|gb|EEU77342.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256992591|gb|EEU79893.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256995473|gb|EEU82775.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257158478|gb|EEU88438.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|257161694|gb|EEU91654.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|257163770|gb|EEU93730.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|291079090|gb|EFE16454.1| putative metalloprotease [Enterococcus faecalis R712] gi|291083207|gb|EFE20170.1| putative metalloprotease [Enterococcus faecalis S613] gi|295113466|emb|CBL32103.1| conserved hypothetical protein TIGR00043 [Enterococcus sp. 7L76] gi|300849190|gb|EFK76940.1| translation metalloprotein YbeY [Enterococcus faecalis TUSoD Ef11] gi|306498391|gb|EFM67896.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0411] gi|306501447|gb|EFM70750.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0109] gi|306502567|gb|EFM71834.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0860] gi|306506084|gb|EFM75250.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX2134] gi|310627774|gb|EFQ11057.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 512] gi|310628700|gb|EFQ11983.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0102] gi|311290147|gb|EFQ68703.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis DAPTO 516] gi|315025401|gb|EFT37333.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX2137] gi|315030209|gb|EFT42141.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX4000] gi|315032905|gb|EFT44837.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0017] gi|315035611|gb|EFT47543.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0027] gi|315144803|gb|EFT88819.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX2141] gi|315150149|gb|EFT94165.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0012] gi|315152158|gb|EFT96174.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0031] gi|315155345|gb|EFT99361.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0043] gi|315159079|gb|EFU03096.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0312] gi|315164808|gb|EFU08825.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1302] gi|315166394|gb|EFU10411.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1341] gi|315170290|gb|EFU14307.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1342] gi|315173675|gb|EFU17692.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX1346] gi|327535697|gb|AEA94531.1| putative metalloprotease [Enterococcus faecalis OG1RF] Length = 159 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIE 68 +D+ E E K + NL+ + G+ E+S+ FTD+ I+ Sbjct: 1 MDITFIDETEKVPTEE----------IKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQ 50 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANV 117 +N +YRG D PT+V+SF D LGD++++ E +A Sbjct: 51 VINRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAVE 110 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HGFLHL GYDH++ +D M GL++ IL+ G+ Sbjct: 111 YGHTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLK 158 >gi|312876030|ref|ZP_07736019.1| protein of unknown function UPF0054 [Caldicellulosiruptor lactoaceticus 6A] gi|311797228|gb|EFR13568.1| protein of unknown function UPF0054 [Caldicellulosiruptor lactoaceticus 6A] Length = 158 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 12/161 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +++ N I F++E E+S++ D++ I+ LN Sbjct: 1 MKIFIQNQQ--DKVDVDQHISKIIEESIVNTI--KVFLEEENFEISVLIVDNNFIKELNK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC--------SSLMLGDIVLAYEIIEIEANVLGKEFEN 124 YR ++K T+VLSFP + + LGDIV++ E +A G E Sbjct: 57 NYRNVNKETDVLSFPIFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAEEFGHSLER 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +L +H LHLLG+DH++D D VM E IL+ +G+ Sbjct: 117 EVAYLTVHSVLHLLGFDHIEDDDRKVMREYEEQILQSMGLT 157 >gi|312793455|ref|YP_004026378.1| hypothetical protein Calkr_1257 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180595|gb|ADQ40765.1| protein of unknown function UPF0054 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 158 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 12/161 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +++ N I F++E E+S++ D++ I+ LN Sbjct: 1 MKIIIQNQQ--DKVDVDQHISKIIEESIVNTI--KVFLEEENFEISVLIVDNNFIKELNK 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC--------SSLMLGDIVLAYEIIEIEANVLGKEFEN 124 YR ++K T+VLSFP + + LGDIV++ E +A G E Sbjct: 57 NYRNVNKETDVLSFPIFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAEEFGHSLER 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +L +H LHLLG+DH++D D VM E IL+ +G+ Sbjct: 117 EVAYLTVHSVLHLLGFDHIEDDDRKVMREYEEQILQSMGLT 157 >gi|237738285|ref|ZP_04568766.1| metal-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229420165|gb|EEO35212.1| metal-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 155 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E + V ++ K Y E V +SL+FT + I+ +N EYR D+PT+V+SF Sbjct: 20 EEEIREYVQKVLEKEYES-EAPVYMSLLFTGNDEIQVINREYRDKDQPTDVISFAYHETE 78 Query: 93 SDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 LGDIV++ E + +A + L +++ HG LHLLGYDH++++D M Sbjct: 79 DFDIGPYDTLGDIVISLERVVEQAKEYNHSDKRELFYVLTHGILHLLGYDHIEEEDKKEM 138 Query: 152 EGLERSILEDLGIN 165 E IL G Sbjct: 139 RAKEEEILGSFGYT 152 >gi|295698305|ref|YP_003602960.1| hypothetical protein RIEPE_0079 [Candidatus Riesia pediculicola USDA] gi|291157124|gb|ADD79569.1| conserved hypothetical protein [Candidatus Riesia pediculicola USDA] Length = 151 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 6/138 (4%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L F K + ++S YF E E+S+ + TLN YRG D PTNVLSF + Sbjct: 19 LNRKRFIKWIDRVLS--YFSSEK--EISIYIASLEEMRTLNRLYRGRDYPTNVLSFSSN- 73 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 G + LGD+++ +EI++ EA K ++H H+IIHG LHLLG H ++ D Sbjct: 74 -DMRGFNFSFLGDLIICHEILKKEAKNQRKSIDSHWAHIIIHGCLHLLGIHHQNEIDLKK 132 Query: 151 MEGLERSILEDLGINDPY 168 ME +E IL+ LG +P+ Sbjct: 133 MESMEIKILKRLGYPNPF 150 >gi|15676444|ref|NP_273583.1| hypothetical protein NMB0538 [Neisseria meningitidis MC58] gi|26006912|sp|Q9K0P7|RRMF_NEIMB RecName: Full=Probable rRNA maturation factor gi|7225763|gb|AAF40967.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|325139809|gb|EGC62342.1| putative metalloprotease [Neisseria meningitidis CU385] gi|325200774|gb|ADY96229.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis H44/76] Length = 169 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMRAAGFPNPYQED 169 >gi|220932095|ref|YP_002509003.1| conserved hypothetical protein TIGR00043 [Halothermothrix orenii H 168] gi|219993405|gb|ACL70008.1| conserved hypothetical protein TIGR00043 [Halothermothrix orenii H 168] Length = 142 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 8/129 (6%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + + +I+K V++ +S+ D+ I LN +YR ++ PT+VLSFP Sbjct: 19 IKQLIETVINKTAEVEKASGTVSVALVDNKTIAELNSKYRNVEGPTDVLSFPMDED---- 74 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +LGDI+++ + +A+ G E L L +HG LHLLGY+H D++ CVM E Sbjct: 75 ----ILGDIIISIDRARQQADEYGHSLERELGFLTVHGMLHLLGYNHKTDEEKCVMRQKE 130 Query: 156 RSILEDLGI 164 +L++L + Sbjct: 131 ERVLKELEL 139 >gi|298293909|ref|YP_003695848.1| hypothetical protein Snov_3959 [Starkeya novella DSM 506] gi|296930420|gb|ADH91229.1| protein of unknown function UPF0054 [Starkeya novella DSM 506] Length = 172 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + VE W L A S+ Y + + E+++ TD I L Sbjct: 7 IEVDVLVEADAWSAFPEAAGLVIRAVDAACEGASSE-YELDIDGAEIAVKLTDDASIRLL 65 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++RG D TNVLSFPT + G LGDI +A+E + EA GK F +HLVHL Sbjct: 66 NRDWRGKDYATNVLSFPTPEMARAGGDP-HLGDIAIAFETLAREAAEEGKPFADHLVHLA 124 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +HG LHLLGYDH +DA ME +ER +L LG+ DPY Sbjct: 125 VHGTLHLLGYDHEVAEDAEEMEAMERRVLAGLGVPDPY 162 >gi|312140288|ref|YP_004007624.1| hypothetical protein REQ_29270 [Rhodococcus equi 103S] gi|325677054|ref|ZP_08156724.1| metalloprotease [Rhodococcus equi ATCC 33707] gi|311889627|emb|CBH48944.1| conserved hypothetical protein [Rhodococcus equi 103S] gi|325552125|gb|EGD21817.1| metalloprotease [Rhodococcus equi ATCC 33707] Length = 180 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I+ E+ + + L ++ V A+ + ELS+V DS + L Sbjct: 1 MSIEISNESGMEVSDEDLISVARFVIARMDVH----------PAAELSMVLVDSSTMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL +A G ++ Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPSFALEQAEKAGHSLDH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + ++ M GL+ +L D Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEKEMFGLQNQLLADW 148 >gi|226360377|ref|YP_002778155.1| metalloprotease [Rhodococcus opacus B4] gi|254807287|sp|C1AUK2|RRMF_RHOOB RecName: Full=Probable rRNA maturation factor gi|226238862|dbj|BAH49210.1| hypothetical protein [Rhodococcus opacus B4] Length = 180 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V A+ + ELS+V DS + L Sbjct: 1 MSIEVSNESGMDVSEEELISVARFVIARMDVH----------PAAELSMVLVDSATMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP S MLGDIVL +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDSPEPGPSMLGDIVLCPSFAADQAEKAGHPLAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + ++ M GL+ +L+D Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEKEMFGLQNQLLDDW 148 >gi|29376907|ref|NP_816061.1| putative metalloprotease [Enterococcus faecalis V583] gi|227553943|ref|ZP_03983990.1| metalloprotease [Enterococcus faecalis HH22] gi|46577437|sp|Q831T7|RRMF_ENTFA RecName: Full=Probable rRNA maturation factor gi|29344372|gb|AAO82131.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis V583] gi|227176929|gb|EEI57901.1| metalloprotease [Enterococcus faecalis HH22] gi|315574356|gb|EFU86547.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0309B] gi|315580169|gb|EFU92360.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0309A] Length = 159 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIE 68 +D+ E E K + NL+ + G+ E+S+ FTD+ I+ Sbjct: 1 MDITFIDETEKVPTEE----------IKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQ 50 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANV 117 +N +YRG D PT+V+SF D LGD++++ E +A Sbjct: 51 MINRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAVE 110 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HGFLHL GYDH++ +D M GL++ IL+ G+ Sbjct: 111 YGHTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLK 158 >gi|325141764|gb|EGC64216.1| hypothetical protein TIGR00043 [Neisseria meningitidis 961-5945] gi|325197750|gb|ADY93206.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis G2136] Length = 171 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMRAAGFPNPYQED 169 >gi|256845042|ref|ZP_05550500.1| metal-binding protein [Fusobacterium sp. 3_1_36A2] gi|256718601|gb|EEU32156.1| metal-binding protein [Fusobacterium sp. 3_1_36A2] Length = 162 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + ++ + + LSL+ TD+ I+ +N EYR D PT+V+SF Sbjct: 33 IKKVLELEKVESDRPLYLSLLLTDNENIQVINREYRDKDAPTDVISFAYHETEDFNIGPY 92 Query: 100 M-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDI+++ E +E +A FE +++ HG LH+LGYDH++++D +M E +I Sbjct: 93 DTLGDIIISLERVEEQAGEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMRKREEAI 152 Query: 159 LEDLGIN 165 L G Sbjct: 153 LSSFGYT 159 >gi|296314907|ref|ZP_06864848.1| putative metalloprotease [Neisseria polysaccharea ATCC 43768] gi|296838092|gb|EFH22030.1| putative metalloprotease [Neisseria polysaccharea ATCC 43768] Length = 171 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA +L + E F + + + Y ++S Sbjct: 3 RAKQYPFLSLQRQRFHLNFENA--SSAANLPS--ERDFYRWAWSALKNEY----RRADIS 54 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF D S + GD+V+ +++ EA Sbjct: 55 LILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQFSDGLYGDLVICPQVVLKEAA 114 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K E H HL IHG LHL+GYDH++D +A +ME E ++ +G +PY+ D Sbjct: 115 EQDKTPEQHFAHLTIHGTLHLMGYDHIEDNEAEIMEAEEIRLMLAVGFPNPYQED 169 >gi|251796244|ref|YP_003010975.1| hypothetical protein Pjdr2_2233 [Paenibacillus sp. JDR-2] gi|247543870|gb|ACT00889.1| protein of unknown function UPF0054 [Paenibacillus sp. JDR-2] Length = 165 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 19/169 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQ+ W +E + + + L G E++L FTD+ +I L Sbjct: 1 MSLQL-----DWSNEQEKMEIPDQWVERLEQLLQIAGEMEGLTDGEVTLTFTDNEQIHQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFA------------SSDGCSSL--MLGDIVLAYEIIEIEAN 116 N EYR ID+PT+VLSF S D + MLGDIV++ E + ++ Sbjct: 56 NREYRNIDRPTDVLSFAMQDEGTEELDIIFEVESEDEIDPISGMLGDIVISVEKAQEQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HGFLHLLGYDH+DD M + ++L+ G++ Sbjct: 116 DYGHSLEREIGFLFVHGFLHLLGYDHMDDAGEAEMTAKQEAVLQKAGLS 164 >gi|299533016|ref|ZP_07046403.1| putative metal-dependent hydrolase [Comamonas testosteroni S44] gi|298719240|gb|EFI60210.1| putative metal-dependent hydrolase [Comamonas testosteroni S44] Length = 152 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 13/158 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 LQ++++ +G E++ V+ I V E+++ D+ LN Sbjct: 6 LQLSLQ---FGPSAEAAAHRELLSRSRVTRWIRHALAVD---AEITVRIVDTEEGRKLNR 59 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EYR D TNVL+F ++ D+VL ++E EA K E H HL++H Sbjct: 60 EYRKKDYATNVLTFDYH------QEPTVMADLVLCAPVVEREAQEQNKSLEEHYAHLLVH 113 Query: 133 GFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 G LH G+DH ++DA ME E I++++G DPY Sbjct: 114 GTLHAQGWDHETSEEDAEEMEAYETDIMKEMGYEDPYA 151 >gi|120404789|ref|YP_954618.1| putative metalloprotease [Mycobacterium vanbaalenii PYR-1] gi|145558818|sp|A1TBR2|RRMF_MYCVP RecName: Full=Probable rRNA maturation factor gi|119957607|gb|ABM14612.1| protein of unknown function UPF0054 [Mycobacterium vanbaalenii PYR-1] Length = 184 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V K N ELS++ D+ + L Sbjct: 1 MTIEVSNESGIDVSEEELISVARFVIGKMDVN----------PAAELSMLLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAKQAADAGHTLGQ 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M L+R +LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPDEEKEMFALQRELLEEW 148 >gi|157804110|ref|YP_001492659.1| putative metalloprotease [Rickettsia canadensis str. McKiel] gi|166227281|sp|A8EZU1|RRMF_RICCK RecName: Full=Probable rRNA maturation factor gi|157785373|gb|ABV73874.1| hypothetical protein A1E_04765 [Rickettsia canadensis str. McKiel] Length = 172 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 19/175 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + + + + + K N++ + F K ELS++ T++ I Sbjct: 1 MINVEIIRNYDKWREH---KQINKALIKKVTQNVLLRFDNFSKIKQFELSILLTNTAEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTA---------------FASSDGCSSLMLGDIVLAYEIIEI 113 TLN ++R IDK TNVLSFP+ G + LGDI YE+I Sbjct: 58 TLNKQFRNIDKATNVLSFPSNKLNWQDLCFSNVSPKLELLIGYDYMHLGDIAFCYEVIYN 117 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+ K ENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 118 ESYEQQKTSENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIASPY 172 >gi|313668982|ref|YP_004049266.1| hypothetical protein NLA_17020 [Neisseria lactamica ST-640] gi|313006444|emb|CBN87907.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 209 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA +L + + F + + + GY ++ Sbjct: 41 RAKKYPFLTLQRQRFHLNFENA--SSAANLPSKHD--FYRWAWSALKSGY----RRADIG 92 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF C S + GD+++ +++ EA Sbjct: 93 LILLDEEAARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVLKEAA 152 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY D Sbjct: 153 EQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGYPNPYRED 207 >gi|303228961|ref|ZP_07315771.1| translation metalloprotein YbeY [Veillonella atypica ACS-134-V-Col7a] gi|302516375|gb|EFL58307.1| translation metalloprotein YbeY [Veillonella atypica ACS-134-V-Col7a] Length = 158 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 14/164 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI+ ++ + D T E V K V + +S+ Y ++++ ELS++ D+ +I L Sbjct: 1 MHIQISYDDGIARD-----TKIEEVIQK-VCDEVSRVYGLEDD--ELSILLCDNKKIHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLV 127 N EYRGID+PT+VLSF S +LGD++L+ E +A G FE L Sbjct: 53 NKEYRGIDRPTDVLSFALNEGDDYEGSEEEHHLLGDMILSLERAHEQAVEYGHSFERELA 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPY 168 +L H LH+LGYDH+ D+D M E +L +LG + PY Sbjct: 113 YLTTHSCLHILGYDHMTDEDKKEMRTEEEFVLSNLGYVREDQPY 156 >gi|304388236|ref|ZP_07370356.1| metal-dependent hydrolase [Neisseria meningitidis ATCC 13091] gi|304337763|gb|EFM03912.1| metal-dependent hydrolase [Neisseria meningitidis ATCC 13091] Length = 211 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 72 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 127 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 128 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 187 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 188 IMEAEEIRLMLAAGFPNPYQED 209 >gi|258516221|ref|YP_003192443.1| putative metalloprotease [Desulfotomaculum acetoxidans DSM 771] gi|257779926|gb|ACV63820.1| protein of unknown function UPF0054 [Desulfotomaculum acetoxidans DSM 771] Length = 154 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS- 93 + KA + + + E+SLV TD I LN +YRG+D+PT+VLSF Sbjct: 21 LLEKAAETAMQVAGYTGQG--EVSLVLTDDRYIHELNRDYRGVDRPTDVLSFAQNEGEQL 78 Query: 94 --DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + +LGD++++ E E +A G FE L +HG LHLL YDH++++D +M Sbjct: 79 QAAEEAEELLGDVIISLETAERQAEEYGHSFEREAAFLTVHGVLHLLAYDHIEEEDRVIM 138 Query: 152 EGLERSILEDLGIN 165 E + + + Sbjct: 139 RSKEEEAMSRMDLP 152 >gi|302386448|ref|YP_003822270.1| protein of unknown function UPF0054 [Clostridium saccharolyticum WM1] gi|302197076|gb|ADL04647.1| protein of unknown function UPF0054 [Clostridium saccharolyticum WM1] Length = 165 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 18/163 (11%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + E L E + + V + Y E++++ T + I +N EYR +D Sbjct: 4 NIEYEAEQKLDIPYEDIIKRVVEESLD--YENCPYEAEVNVLITGNEEIRQINREYRDMD 61 Query: 79 KPTNVLSFPTAFAS----------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 PT+VLSFP L+LGDIV++ +E +A G Sbjct: 62 TPTDVLSFPMIEYECPSEFEHLEETADDCFHPETGELLLGDIVISVNKVEEQAEKYGHSQ 121 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L+ H LHL GYDH+++ + +ME + IL G Sbjct: 122 TRELAFLVAHSMLHLCGYDHMEEDEREIMEKKQEEILSRGGYT 164 >gi|229587097|ref|YP_002845598.1| putative metalloprotease [Rickettsia africae ESF-5] gi|259645703|sp|C3PLL5|RRMF_RICAE RecName: Full=Probable rRNA maturation factor gi|228022147|gb|ACP53855.1| Putative metal-dependent hydrolase [Rickettsia africae ESF-5] Length = 167 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 11/151 (7%) Query: 29 RTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 + + + + K N++ + F K ELS++ T++ I TLN ++R I+K TNVLSFP Sbjct: 17 KQINKSLIKKITQNILLRFDNFSKIKQFELSILLTNAAEILTLNKQFRNIEKATNVLSFP 76 Query: 88 TAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 + D + LGDI YE+I E+ K FENH +HL+IH LHL Sbjct: 77 SNELNWQDLYSKLEFLDDSDYMHLGDIAFCYEVIYNESCEQHKTFENHFIHLLIHSILHL 136 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +G+DH +D +A +ME LE IL GI PY Sbjct: 137 IGFDHQNDTEANIMENLEIEILSYFGIFPPY 167 >gi|222529265|ref|YP_002573147.1| hypothetical protein Athe_1274 [Caldicellulosiruptor bescii DSM 6725] gi|254800021|sp|B9MRS0|RRMF_ANATD RecName: Full=Probable rRNA maturation factor gi|222456112|gb|ACM60374.1| protein of unknown function UPF0054 [Caldicellulosiruptor bescii DSM 6725] Length = 158 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 12/161 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +++ N I F++E E+S++ D+ I+ LN Sbjct: 1 MKIFIQNQQ--DKVDIDQHISKIIEESIVNTI--KVFLEEENFEISVLIVDNSFIKELNR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC--------SSLMLGDIVLAYEIIEIEANVLGKEFEN 124 YR ++K T+VLSFP + + LGDIV++ E +A G E Sbjct: 57 NYRNVNKETDVLSFPIFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAKEFGHSLER 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 117 EIAYLTVHSVLHLLGFDHIEEDDRKVMREYEEQILQSMGLT 157 >gi|308069930|ref|YP_003871535.1| hypothetical protein PPE_03178 [Paenibacillus polymyxa E681] gi|305859209|gb|ADM70997.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 165 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 19/169 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQ+A W +E + + E + + L G E++L F + +I L Sbjct: 1 MGLQLA-----WNNEQNDMVINESLITLLNTLLEEAGKVEGVTDGEVALTFVNDEQIHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLMLGDIVLAYEIIEIEAN 116 N +YRGID+PT+VLSF + +LGDI+++ + + ++ Sbjct: 56 NRDYRGIDRPTDVLSFAMKETLDEELEIIYEPNEENSLNDVPDVLGDIIISVQTAQAQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HGFLHLLGYDH DD M G + ++L G+ Sbjct: 116 EYGHSIEREIGFLFVHGFLHLLGYDHQDDVSEAEMMGKQEAVLAQAGLT 164 >gi|188996202|ref|YP_001930453.1| protein of unknown function UPF0054 [Sulfurihydrogenibium sp. YO3AOP1] gi|229557463|sp|B2V7H6|RRMF_SULSY RecName: Full=Probable rRNA maturation factor gi|188931269|gb|ACD65899.1| protein of unknown function UPF0054 [Sulfurihydrogenibium sp. YO3AOP1] Length = 152 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 6/139 (4%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E++ + + + ++S+ N VE+S+ TD+ RI +N E+RG DKPT+VL Sbjct: 15 EVYSKEITKKFLKDITEKILSELNL---NNVEISITLTDNERIREINKEWRGKDKPTDVL 71 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP + G +LGD++++ + +A +G ++ L++HG LHLLGYDH Sbjct: 72 SFPQ--DETIGYKYRLLGDVIISLPYAKAQAEEIGLTLREEVLRLLVHGILHLLGYDHET 129 Query: 145 -DKDACVMEGLERSILEDL 162 ++DA +M L+ I + L Sbjct: 130 NEEDAKIMFDLQDKIFDKL 148 >gi|118467556|ref|YP_888768.1| metalloprotease [Mycobacterium smegmatis str. MC2 155] gi|166227261|sp|A0R0T0|RRMF_MYCS2 RecName: Full=Probable rRNA maturation factor gi|118168843|gb|ABK69739.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 178 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ E L ++ V K + ELS+V DS + L Sbjct: 1 MSIEVSNESGYDVSEPELISVARFVIEKMDVH----------PAAELSMVLLDSAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAEQQAAKAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M L+R +LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPDEEKEMFALQRQLLEEW 148 >gi|87199002|ref|YP_496259.1| hypothetical protein Saro_0980 [Novosphingobium aromaticivorans DSM 12444] gi|123490218|sp|Q2G9P8|RRMF_NOVAD RecName: Full=Probable rRNA maturation factor gi|87134683|gb|ABD25425.1| protein of unknown function UPF0054 [Novosphingobium aromaticivorans DSM 12444] Length = 167 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 89/173 (51%), Gaps = 14/173 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++ P L++ I + +WGD I ++ A + EN++ +S+V D Sbjct: 1 MSAPILEMDI---DPVWGDAID---WEDIASRAAEAAAKVAPELAHENLL-VSVVLADDD 53 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLG 119 + LN ++R DKPTNVLSFP D + MLGD++LA+ + EA G Sbjct: 54 EVHALNKQWRAKDKPTNVLSFPMLSREEVLHAAADEGAPGMLGDMILAHGVCTREAAEKG 113 Query: 120 KEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYEVD 171 E H HL++HG LHL GYDH + +A ME LER L +GI DPY V+ Sbjct: 114 VSVETHATHLVVHGLLHLAGYDHELGEAEAEEMENLERKALALMGIADPYAVE 166 >gi|323486952|ref|ZP_08092267.1| hypothetical protein HMPREF9474_04018 [Clostridium symbiosum WAL-14163] gi|323692000|ref|ZP_08106248.1| hypothetical protein HMPREF9475_01111 [Clostridium symbiosum WAL-14673] gi|323399724|gb|EGA92107.1| hypothetical protein HMPREF9474_04018 [Clostridium symbiosum WAL-14163] gi|323503923|gb|EGB19737.1| hypothetical protein HMPREF9475_01111 [Clostridium symbiosum WAL-14673] Length = 165 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 18/163 (11%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + E L E + V+ + Y E++++ TD+ I +N E+R ID Sbjct: 4 NIEYEAEKKLNLPYESIIEDVVNASLD--YEKCPYEAEVNVILTDNAEIRRINREFRQID 61 Query: 79 KPTNVLSFPTAFAS----------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 PT+VLSFP + L+LGDIV++ + +E +A G Sbjct: 62 SPTDVLSFPMGDFDVPSDFERMEEQSEDYFNPETGELLLGDIVISVDKVEEQAEKYGHSQ 121 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L+ H LHL GYDH+++++ ME + IL G Sbjct: 122 TRELAFLVAHSMLHLCGYDHMEEQERIAMEKRQEEILSTGGFA 164 >gi|256963579|ref|ZP_05567750.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257079644|ref|ZP_05574005.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|294780924|ref|ZP_06746278.1| metalloprotein, YbeY family [Enterococcus faecalis PC1.1] gi|307270831|ref|ZP_07552119.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX4248] gi|307271518|ref|ZP_07552790.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0855] gi|312899841|ref|ZP_07759160.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0470] gi|256954075|gb|EEU70707.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256987674|gb|EEU74976.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|294452050|gb|EFG20498.1| metalloprotein, YbeY family [Enterococcus faecalis PC1.1] gi|306511790|gb|EFM80788.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX0855] gi|306512832|gb|EFM81476.1| hypothetical protein TIGR00043 [Enterococcus faecalis TX4248] gi|311293091|gb|EFQ71647.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0470] Length = 159 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIE 68 +D+ E E K + NL+ + G+ E+S+ FTD+ I+ Sbjct: 1 MDITFIDETEKVPTEE----------IKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQ 50 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANV 117 +N +YRG D PT+V+SF D LGD++++ E +A Sbjct: 51 VINRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAFE 110 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HGFLHL GYDH++ +D M GL++ IL+ G+ Sbjct: 111 YGHTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLK 158 >gi|120612878|ref|YP_972556.1| hypothetical protein Aave_4242 [Acidovorax citrulli AAC00-1] gi|145558826|sp|A1TUZ4|RRMF_ACIAC RecName: Full=Probable rRNA maturation factor gi|120591342|gb|ABM34782.1| protein of unknown function UPF0054 [Acidovorax citrulli AAC00-1] Length = 152 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M++ +++ L LQ A G E H L + + + +S E+++ Sbjct: 1 MALNQLS---LSLQFA---RFPGVEAHRAALPRHAVVRWIRHALSL-------DAEITVR 47 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D+ + LN EYR D TNVL+F A +++ D+VL ++E EA K Sbjct: 48 IVDAEEGQALNREYRHKDYATNVLTFDYA------QEPVVMADLVLCAPVVEREAREQNK 101 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLERSILEDLGINDPYEV 170 H HL++HG LH G+DH +DA ME E +I+++LG DPY Sbjct: 102 ALHEHYAHLLVHGTLHAQGWDHETSAEDADEMEAYETAIMQELGFADPYAD 152 >gi|309388931|gb|ADO76811.1| protein of unknown function UPF0054 [Halanaerobium praevalens DSM 2228] Length = 143 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 8/147 (5%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + + + + + +++ + E+S+ F +I+ LN +YR D Sbjct: 3 NVDFNNSQTAVEIDQEILKLLEKVVVTAAEIEGYSGGEVSIAFVTKAKIKELNNDYRDKD 62 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 T+VLSFP + +LGDI+++ +I +A + L +L +HG LHL Sbjct: 63 SVTDVLSFPM--------DAEVLGDIIISAQIASEQAQEYKHSLKRELAYLTVHGMLHLF 114 Query: 139 GYDHVDDKDACVMEGLERSILEDLGIN 165 GYDH ++ M E +L LGI+ Sbjct: 115 GYDHHGQEEKNEMRQKEERVLTQLGIS 141 >gi|114770162|ref|ZP_01447700.1| hypothetical protein OM2255_11015 [alpha proteobacterium HTCC2255] gi|114548999|gb|EAU51882.1| hypothetical protein OM2255_11015 [alpha proteobacterium HTCC2255] Length = 172 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I +E+ W D ++ L + F+ L + E+S++ + +I LN Sbjct: 13 DIVIEDKRWSD-FGIQDLADRTFSIVFDVLNLSKKW------EISILACNDAKIIELNST 65 Query: 74 YRGIDKPTNVLSFPTAFASSD------------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 +R TNVLS+P SD +LGDI ++++ E EA Sbjct: 66 FRDKPIATNVLSWPAHNLKSDFIGKTPNKPILSNIEENLLGDIAISFDTCEREAVESNLH 125 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 F++H HL++HG LHLL YDH++D DA +ME LE +L+ +GI DPY Sbjct: 126 FKDHTTHLLVHGCLHLLNYDHINDLDALIMEKLETQLLKVMGIADPY 172 >gi|85709121|ref|ZP_01040187.1| predicted metal-dependent hydrolase [Erythrobacter sp. NAP1] gi|85690655|gb|EAQ30658.1| predicted metal-dependent hydrolase [Erythrobacter sp. NAP1] Length = 161 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 89/164 (54%), Gaps = 13/164 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L+I +E+ W + E + +A + + + +S++FT + TL Sbjct: 1 MELEIDLED--WPEGE-----WEALTQRAADAAAGVEPALASDRLSVSILFTSDGEVHTL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 N E+R DKPTNVLSFP + + MLGDI LAYE EA ++H Sbjct: 54 NREWRQRDKPTNVLSFPMMERAELLELGEEGPPAMLGDIALAYETCAREAAEKNIPLDHH 113 Query: 126 LVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 HLI+HG LHL G+DHV +++A VME LERS L ++GI DPY Sbjct: 114 AAHLIVHGLLHLAGHDHVHCEEEAQVMEDLERSALANMGIADPY 157 >gi|67459578|ref|YP_247202.1| putative metalloprotease [Rickettsia felis URRWXCal2] gi|75536024|sp|Q4UK98|RRMF_RICFE RecName: Full=Probable rRNA maturation factor gi|67005111|gb|AAY62037.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2] Length = 167 Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 14/170 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + + + + + K N++ + F K ELS++ T++ I Sbjct: 1 MINVEIIKNYDKWREH---KQINKSLIKKITQNVLLRFDNFSKIKQFELSILLTNTAEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 TLN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 58 TLNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYIHLGDIAFCYEVIYNESCEQ 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI+ PY Sbjct: 118 QKNFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGISSPY 167 >gi|319947870|ref|ZP_08022057.1| metal-binding heat shock protein [Dietzia cinnamea P4] gi|319438476|gb|EFV93409.1| metal-binding heat shock protein [Dietzia cinnamea P4] Length = 160 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DE L + V A+ + ELS+ D + L Sbjct: 1 MSIEVANESGVEVDEAELIDVAAFVIARMDVH----------PAAELSITLVDKDTMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP MLGDIVL +A G + Sbjct: 51 HVTWMNLPGPTDVMSFPMDELTPGGRPDLPEPGPAMLGDIVLCPAFAADQAASSGHPLAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M GL+ +L + Sbjct: 111 ELALLTVHGCLHLLGYDHAEPAEEREMFGLQNELLGEW 148 >gi|15604575|ref|NP_221093.1| putative metalloprotease [Rickettsia prowazekii str. Madrid E] gi|2073493|emb|CAA72455.1| hypothetical protein [Rickettsia prowazekii] gi|3861270|emb|CAA15169.1| unknown [Rickettsia prowazekii] Length = 180 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 14/170 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + R + + + K N++ + F K ELS++ T++ I Sbjct: 14 MINVEIIRNYNKWREH---RKINKGLIKKITQNVLVRFDNFSKIKQFELSILLTNTAEIL 70 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGC----------SSLMLGDIVLAYEIIEIEANVL 118 TLN ++R I+K TNVLSFP + + LGDI YE+I E+ Sbjct: 71 TLNQQFRSIEKATNVLSFPNNELNWHNLYSKLEFLYYSDYMHLGDIAFCYEVIYNESCEQ 130 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +H++IH LHL+G+DH +D DA +ME LE IL GI PY Sbjct: 131 QKTFENHFIHMLIHSILHLIGFDHQNDTDANIMESLEIEILSYFGIPSPY 180 >gi|111018251|ref|YP_701223.1| putative metalloprotease [Rhodococcus jostii RHA1] gi|123145313|sp|Q0SHC1|RRMF_RHOSR RecName: Full=Probable rRNA maturation factor gi|110817781|gb|ABG93065.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 180 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V A+ + ELS+V DS + L Sbjct: 1 MSIEVSNESGMDVSEEELISVARFVIARMDVH----------PAAELSMVLVDSATMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP S MLGDIVL +A+ G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDSPEPGPSMLGDIVLCPSFASDQADKAGHPLAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + ++ M GL+ +LED Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEKEMFGLQNQLLEDW 148 >gi|260222300|emb|CBA31726.1| Putative metalloprotease Rfer_0737 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 147 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 15/161 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 LP L L + + E H L + + N + E E+++ D+ Sbjct: 2 LPELSLSLQF-GKIQDAEKHRDALKRHKVIRWIRNTL-------EVDGEITVRIVDAEEG 53 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 +TLN EYR D TNVL+F D + D+VL ++ EA K E H Sbjct: 54 QTLNREYRQKDYATNVLTF-------DYTQEPVTADLVLCAPVVAKEAKEQKKTLEAHYA 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+I+HG LH G+DH D+DA VME E I+ LG +PY Sbjct: 107 HMIVHGTLHAQGWDHELDEDAEVMELRESEIMARLGFKNPY 147 >gi|212696004|ref|ZP_03304132.1| hypothetical protein ANHYDRO_00540 [Anaerococcus hydrogenalis DSM 7454] gi|212676991|gb|EEB36598.1| hypothetical protein ANHYDRO_00540 [Anaerococcus hydrogenalis DSM 7454] Length = 154 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 12/158 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ ++N D + L+ E V + + K V E E+SL F D +I LN Sbjct: 1 MKLIIDNTTNED-LTLQKDLEKVIKEVL-----KVENVDEKKCEISLSFVDEIKIRDLNK 54 Query: 73 EYRGIDKPTNVLSFPTAFASSD------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 ++R D+ T+VLSFP ++ LMLGD+V+ ++ +A LG FE + Sbjct: 55 DFRQTDRVTDVLSFPIEDFFNEDRKTLLEKPYLMLGDVVICTDVARKQAKELGHSFEREI 114 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++L H LHLLGYDH+++ D +M E+ ++++LG+ Sbjct: 115 IYLTCHSILHLLGYDHMEEDDKKIMRLKEKQVMKNLGV 152 >gi|326318913|ref|YP_004236585.1| hypothetical protein Acav_4129 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375749|gb|ADX48018.1| protein of unknown function UPF0054 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 152 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 20/171 (11%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M++ ++N L LQ A G + H L A+ + + ++ E+++ Sbjct: 1 MALNQLN---LSLQFA---RFAGVQAHRDALPRHAVARWIRHALA-------TDAEITVR 47 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 D+ + LN EYR D TNVL+F A +++ D+VL ++E EA K Sbjct: 48 IVDAEEGQALNREYRHKDYATNVLTFDYA------QEPVVMADLVLCAPVVEREAREQNK 101 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLERSILEDLGINDPYEV 170 H HL++HG LH G+DH +DA ME E +I+++LG DPY Sbjct: 102 ALHEHYAHLLVHGTLHAQGWDHETSAEDADEMEAYETAIMQELGFADPYAD 152 >gi|160933318|ref|ZP_02080706.1| hypothetical protein CLOLEP_02163 [Clostridium leptum DSM 753] gi|156867195|gb|EDO60567.1| hypothetical protein CLOLEP_02163 [Clostridium leptum DSM 753] Length = 169 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 6/145 (4%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ + T ++ + + ++ F + E+S+ F ++ +I LN +R +D PT+VL Sbjct: 15 EVKIPTGLRMLVRRCCNAVLRMENF--QGAAEVSVTFANNEQIHELNKMHRNVDAPTDVL 72 Query: 85 SFPTAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 SFP +LGDIV++ E +A G + + +L H LHLLGY Sbjct: 73 SFPMGEDGKYDIDPATNAKILGDIVISMEKAVEQAERFGHTLQREVGYLTAHSMLHLLGY 132 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH + + M E ++ LG+ Sbjct: 133 DHEEPLEKVHMREKEELVMTQLGLP 157 >gi|254991895|ref|ZP_05274085.1| putative metalloprotease [Listeria monocytogenes FSL J2-064] Length = 161 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + E DE + L E + + Y E ELSL FT + I + Sbjct: 4 LEIDLLDETKNLLDED--KQLVENILQ------FAAEYLKIEQGTELSLTFTTNEGIREI 55 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N EYR D+ T+V+SF D + MLGDI+++ E E +A G Sbjct: 56 NREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQATDYGH 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L +HG LHLLGYDH++ + +M GL++ +L+ G+ Sbjct: 116 TKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE 160 >gi|257869125|ref|ZP_05648778.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803289|gb|EEV32111.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 158 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 10/131 (7%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF----------PTAFASSD 94 + Y E+S+ F D+ I+ +N +YR D+PT+V+SF P F Sbjct: 27 AADYLKLPEDTEMSVTFMDNAAIQVINRDYRDKDQPTDVISFALEEETEEELPIIFDDEM 86 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E + +A+ G ++ L L +HGFLH+ GYDH+ +D M GL Sbjct: 87 PAMPRNLGDIMISVERAKEQASEYGHSYDRELGFLALHGFLHINGYDHMTPEDEKEMFGL 146 Query: 155 ERSILEDLGIN 165 ++ IL+ G+ Sbjct: 147 QKEILDAYGLK 157 >gi|237740707|ref|ZP_04571188.1| metal-binding protein [Fusobacterium sp. 2_1_31] gi|229422724|gb|EEO37771.1| metal-binding protein [Fusobacterium sp. 2_1_31] Length = 161 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 8/161 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVE----LSLVFTDSH 65 L L + E + L E + + N I K ++E E LS++ TD+ Sbjct: 2 ELVLDFSCELDNEKYNEFIDKLYEDSY---LENYIKKVLEIEEVKAERPLYLSVLLTDNK 58 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFEN 124 I+ +N EYR D PT+V+SF LGDI+++ E +E +++ FE Sbjct: 59 NIQVINREYRDKDAPTDVISFAYHETDDFNIGPYDTLGDIIISLERVEEQSSEYNHSFER 118 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +++ HG LH+LGYDH++++D VM E +IL G Sbjct: 119 EFYYVLTHGILHILGYDHIEEEDKKVMREREEAILSSFGYT 159 >gi|261380097|ref|ZP_05984670.1| putative metalloprotease [Neisseria subflava NJ9703] gi|284797315|gb|EFC52662.1| putative metalloprotease [Neisseria subflava NJ9703] Length = 171 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 SERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 S--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 D S + GD+V+ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPDQFSDGLYGDLVICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMLAAGFPNPYQED 169 >gi|329667243|gb|AEB93191.1| putative metal-dependent hydrolase [Lactobacillus johnsonii DPC 6026] Length = 175 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE++ + + +S+L+ +K KEN E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVNFLKDSDKDWIPWISDLLLSAKKEIHKENTQEMSINFVSSKKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF S D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFMSAFSDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL GYDH++D +A +M G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGYDHIEDDEAKIMFGIQGKVLREYGLP 162 >gi|300361844|ref|ZP_07058021.1| metal-dependent hydrolase [Lactobacillus gasseri JV-V03] gi|300354463|gb|EFJ70334.1| metal-dependent hydrolase [Lactobacillus gasseri JV-V03] Length = 175 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE++ + + ++NL+ +K KEN E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVNFLNNDDKDWIPWITNLLLSAKKEINKENAQEMSINFVSSEKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF + D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFMSAFNDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL G+DH++D +A VM G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGFDHIEDDEAKVMFGIQGKVLREYGLP 162 >gi|291542198|emb|CBL15308.1| conserved hypothetical protein TIGR00043 [Ruminococcus bromii L2-63] Length = 171 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 6/144 (4%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + T ++ + + ++ F E E+S+ FTD+ I+ LN +YR D T+VLS Sbjct: 18 VKIPTGIRMLVRRCCNAVLRLEKF--EGSAEISVTFTDNEGIKALNKQYRDKDIETDVLS 75 Query: 86 FPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP ++ + +LGD+V++ E +A + G + + +L H LHLLGYD Sbjct: 76 FPMGENGVYDTNPETGAQILGDVVISMEKARDQAELFGHSLQREVGYLTAHSVLHLLGYD 135 Query: 142 HVDDKDACVMEGLERSILEDLGIN 165 H++ + M E ++E LG+ Sbjct: 136 HMEKLERVRMREKEELVMEQLGLP 159 >gi|329766982|ref|ZP_08258510.1| hypothetical protein HMPREF0428_00207 [Gemella haemolysans M341] gi|328837707|gb|EGF87332.1| hypothetical protein HMPREF0428_00207 [Gemella haemolysans M341] Length = 157 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 7/148 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+ +L + ++ V I E+SL F I+ +N +YRG D PT+V Sbjct: 8 DDNNLVEDSTKDMLLKLLECAAEYENVDTEITEMSLSFVSKEEIQEINRDYRGKDVPTDV 67 Query: 84 LSFPTAFASSDGCSSLML-------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 +SF D + L GD+++ +I +A F+ + L +HGFLH Sbjct: 68 ISFALNDEVEDEIDIIGLEDEINSIGDVIICVDIAHEQAKEYEHSFDREIGFLAVHGFLH 127 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGI 164 LLGYDH++++D M G + ILE G+ Sbjct: 128 LLGYDHMNEEDEKEMFGKQDEILEKFGL 155 >gi|116629757|ref|YP_814929.1| metal-dependent hydrolase [Lactobacillus gasseri ATCC 33323] gi|238853406|ref|ZP_04643785.1| putative metalloprotease [Lactobacillus gasseri 202-4] gi|282851785|ref|ZP_06261148.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus gasseri 224-1] gi|311110601|ref|ZP_07711998.1| putative metalloprotease [Lactobacillus gasseri MV-22] gi|122273305|sp|Q042Y1|RRMF_LACGA RecName: Full=Probable rRNA maturation factor gi|116095339|gb|ABJ60491.1| Predicted metal-dependent hydrolase [Lactobacillus gasseri ATCC 33323] gi|238833978|gb|EEQ26236.1| putative metalloprotease [Lactobacillus gasseri 202-4] gi|282557027|gb|EFB62626.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus gasseri 224-1] gi|311065755|gb|EFQ46095.1| putative metalloprotease [Lactobacillus gasseri MV-22] Length = 175 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE++ + + ++NL+ +K K+N E+S+ F S +I +N +YRG Sbjct: 5 DISFNDEVNFLKNDDKDWIPWITNLLLSAKKEINKKNAQEMSINFVSSEKIHEINKKYRG 64 Query: 77 IDKPTNVLSFPTAFA---------SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF + D +GD+ L E+I+ + F Sbjct: 65 KDRPTDVISFAIEDGLDEDFMAAFNDDPDFVEDIGDLFLCPEVIKRHSVEYETGFNREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HG+LHL G+DH++D +A VM G++ +L + G+ Sbjct: 125 YTLVHGYLHLNGFDHIEDDEAKVMFGIQGKVLREYGLP 162 >gi|332527513|ref|ZP_08403565.1| hypothetical protein RBXJA2T_16287 [Rubrivivax benzoatilyticus JA2] gi|332111920|gb|EGJ11898.1| hypothetical protein RBXJA2T_16287 [Rubrivivax benzoatilyticus JA2] Length = 147 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +++ D TLN +YRG D TNVL+F ++ D+VL ++E EA Sbjct: 39 IAVRIVDEDEGRTLNRDYRGKDYATNVLTFDYEH------EPEVVADLVLCAPVVEREAA 92 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 G E H HL++HG LH G+DH DD +A ME E +L LG DPY Sbjct: 93 EQGVTLEAHYAHLLVHGTLHAQGWDHEDDGEAEAMEARETELLAALGFADPYA 145 >gi|296327852|ref|ZP_06870388.1| metal dependent hydrolase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154986|gb|EFG95767.1| metal dependent hydrolase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 162 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 1/127 (0%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + +++ + + LSL+ TD+ I+ +N EYR D PT+V+SF Sbjct: 33 IKKVLNLEKIESDRPLYLSLLLTDNENIQVINREYRDKDAPTDVISFAYHETEDFNIGPY 92 Query: 100 M-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDI+++ E +E +A+ FE +++ HG LH+LGYDH++++D +M E +I Sbjct: 93 DTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKLMREREEAI 152 Query: 159 LEDLGIN 165 L G Sbjct: 153 LSSFGYT 159 >gi|312144004|ref|YP_003995450.1| protein of unknown function UPF0054 [Halanaerobium sp. 'sapolanicus'] gi|311904655|gb|ADQ15096.1| protein of unknown function UPF0054 [Halanaerobium sp. 'sapolanicus'] Length = 143 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 11/151 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I VE D + + + + AK + I+ + E+S+ F + I+ LN +Y Sbjct: 2 INVEFNDMQDFLEIDQKMKDLLAKVI---ITAAEVEGYSGGEVSVAFVSNEEIKKLNKKY 58 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R ID T+VLSFP +LGDI+++ E +A G + L +L +HG Sbjct: 59 RNIDAATDVLSFP--------IDDEVLGDIIISSERAVSQAEEYGHSLKRELAYLTVHGI 110 Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LHL GYDH ++ M E IL +L ++ Sbjct: 111 LHLFGYDHHGQEEKNKMRQKEERILTELDLS 141 >gi|227892552|ref|ZP_04010357.1| metal-dependent hydrolase [Lactobacillus ultunensis DSM 16047] gi|227865673|gb|EEJ73094.1| metal-dependent hydrolase [Lactobacillus ultunensis DSM 16047] Length = 174 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + L+ +K K N +E+S+ F D R +N +YR Sbjct: 5 DITYNDEVGFLDDKKRDWQDWIMKLLLLAKKEIGKTNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDSIDLAAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ ++A M G++ +LED G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPEEAKEMFGIQGKVLEDYGLP 162 >gi|121634333|ref|YP_974578.1| hypothetical protein NMC0477 [Neisseria meningitidis FAM18] gi|166227285|sp|A1KSE7|RRMF_NEIMF RecName: Full=Probable rRNA maturation factor gi|120866039|emb|CAM09777.1| hypothetical protein NMC0477 [Neisseria meningitidis FAM18] gi|325131788|gb|EGC54489.1| hypothetical protein TIGR00043 [Neisseria meningitidis M6190] gi|325137678|gb|EGC60255.1| hypothetical protein TIGR00043 [Neisseria meningitidis ES14902] Length = 171 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMLAAGFPNPYQED 169 >gi|315161671|gb|EFU05688.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0645] Length = 159 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIE 68 +D+ E E K + NL+ + G+ E+S+ FTD+ I+ Sbjct: 1 MDITFIDETEKVPTEE----------IKEIENLLQLAAGFLEIAEDTEMSVTFTDNAGIQ 50 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANV 117 +N +YRG D PT+V+SF D LGD++++ E +A Sbjct: 51 VINRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAFE 110 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HGFLHL GYDH++ +D M GL++ IL+ G+ Sbjct: 111 YGHTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLK 158 >gi|241889939|ref|ZP_04777237.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] gi|241863561|gb|EER67945.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379] Length = 157 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 7/148 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+ +L + ++ + I E+SL F I+ +N +YRG D PT+V Sbjct: 8 DDNNLVEDSTKDMLLKLLECAAEYENIDTEITEMSLSFVSKEEIQEINRDYRGKDVPTDV 67 Query: 84 LSFPTAFASSDGCSSLML-------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 +SF D + L GD+++ +I +A F+ + L +HGFLH Sbjct: 68 ISFALNDEVEDEIDIIGLEDEINSIGDVIICVDIAHEQAKEYEHSFDREIGFLAVHGFLH 127 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGI 164 LLGYDH+ ++D M G + ILE G+ Sbjct: 128 LLGYDHMTEEDEKEMFGKQDEILEKFGL 155 >gi|313893245|ref|ZP_07826820.1| translation metalloprotein YbeY [Veillonella sp. oral taxon 158 str. F0412] gi|313442141|gb|EFR60558.1| translation metalloprotein YbeY [Veillonella sp. oral taxon 158 str. F0412] Length = 158 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 8/140 (5%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + V + +S+ Y ++E+ E+S++ D+ +I LN EYRGID+PT+VLSF Sbjct: 19 AIIRKVCDEVSRVYGLEED--EMSILLCDNAKIHELNKEYRGIDRPTDVLSFALNEGDDY 76 Query: 95 GCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 S +LGD++++ E +A G FE L +L H LH+LGYDH++D+D M Sbjct: 77 EGSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKEM 136 Query: 152 EGLERSILEDLGI---NDPY 168 E IL +LG + PY Sbjct: 137 RTEEEFILGNLGYVREDAPY 156 >gi|240125026|ref|ZP_04737912.1| hypothetical protein NgonSK_02174 [Neisseria gonorrhoeae SK-92-679] gi|254493055|ref|ZP_05106226.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268683613|ref|ZP_06150475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|226512095|gb|EEH61440.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268623897|gb|EEZ56297.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] Length = 171 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++ L+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 88 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|172037802|ref|YP_001804303.1| hypothetical protein cce_2889 [Cyanothece sp. ATCC 51142] gi|171699256|gb|ACB52237.1| hypothetical protein cce_2889 [Cyanothece sp. ATCC 51142] Length = 170 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 13 LQIAVENALWGDEIHLRT-LCEVVFAKAVS--NLISKGYFVKENIVELSLVFTDSHRIET 69 + + V++A + +T + + K + Y + EL+L T I + Sbjct: 9 IDLNVQDAFAVNSNQAQTYISSQTWKKWFQIWGITLLSYLPVASTYELTLRLTGDQEIHS 68 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 LN +YR ++PT+VL+F T D L +GDI+++ E + +A G Sbjct: 69 LNAQYRQKNQPTDVLAFATLEWDFPKITDEPDSSEPLYIGDIIISVETAQKQAQQQGHSL 128 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L HGFLHLLG+DH D++ M + ++L+ +G+ Sbjct: 129 QRELPWLASHGFLHLLGWDHPDEQSLQKMLQQQETLLKIVGL 170 >gi|313903999|ref|ZP_07837379.1| protein of unknown function UPF0054 [Eubacterium cellulosolvens 6] gi|313471148|gb|EFR66470.1| protein of unknown function UPF0054 [Eubacterium cellulosolvens 6] Length = 181 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 23/171 (13%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +EN E+ + E + V+ ++ + E+S+ F D I +N Sbjct: 1 MTINLENEQ---ELEIPFDYEETAGQIVTKILDEE--KCPYEAEVSITFVDDEEIRRVNR 55 Query: 73 EYRGIDKPTNVLSFP------------------TAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+RGIDK T+VLSFP A + L LGDI+++ + Sbjct: 56 EFRGIDKVTDVLSFPVTQFTPPADFSILEDDEAAADSFDPESGELQLGDILISVSRAMKQ 115 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 A G + + LI H LHL+GYDH+ +++A VME + LEDLGI Sbjct: 116 AEEYGHSLKREIGFLIAHSVLHLMGYDHMTEEEATVMEKKQARYLEDLGIT 166 >gi|226307220|ref|YP_002767180.1| hypothetical protein RER_37330 [Rhodococcus erythropolis PR4] gi|229493192|ref|ZP_04386984.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|259647013|sp|C1A1F6|RRMF_RHOE4 RecName: Full=Probable rRNA maturation factor gi|226186337|dbj|BAH34441.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229319923|gb|EEN85752.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 180 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V A+ + ELS+V DS + L Sbjct: 1 MSIEVSNESGMDISEPELISVARFVIARMDVH----------PAAELSMVLVDSATMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP S MLGDIVL +A+ G + Sbjct: 51 HVRWMDLPGPTDVMSFPMDELEPGGRPDSPEPGPSMLGDIVLCPSFAADQADKAGHSLAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + ++ M GL+ S+LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEKEMFGLQNSLLEEW 148 >gi|330823171|ref|YP_004386474.1| metalloprotease ybeY [Alicycliphilus denitrificans K601] gi|329308543|gb|AEB82958.1| metalloprotease ybeY [Alicycliphilus denitrificans K601] Length = 150 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 22/170 (12%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M++ + L LQ A + + H L A+ + + ++ E+++ Sbjct: 1 MALNHLT---LSLQFARDAS-----THRAALPRHKVARWIRHALAV-------DAEITVR 45 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 S LN E+R D TNVL+F +L D+VL ++E EA GK Sbjct: 46 IVGSEEGRRLNREFRRKDYATNVLTFDYQ------QEPTVLADLVLCAPVVEREAREQGK 99 Query: 121 EFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 + H HL++HG LH G+DH ++DA ME E I+ +LG DPY Sbjct: 100 TLQEHYAHLLVHGALHAQGWDHETGEQDAQEMEAYETEIMRELGFADPYA 149 >gi|121595993|ref|YP_987889.1| hypothetical protein Ajs_3702 [Acidovorax sp. JS42] gi|145558816|sp|A1WC38|RRMF_ACISJ RecName: Full=Probable rRNA maturation factor gi|120608073|gb|ABM43813.1| protein of unknown function UPF0054 [Acidovorax sp. JS42] Length = 152 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M++ +++ L LQ A + H TL A+ + + ++ E+++ Sbjct: 1 MALNQLS---LSLQFARDAEAT---AHRATLPRHAVARWIRHALAV-------DAEITVR 47 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 + + LN E+R D TNVL+F + + D+VL ++E EA K Sbjct: 48 IVGAEEGQRLNREFRHKDYATNVLTFDYQQ------EPVAVADLVLCAPVVEREAREQNK 101 Query: 121 EFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 E H HL++HG LH G+DH ++DA ME E +IL++LG DPY Sbjct: 102 TLEEHYAHLLVHGTLHAQGWDHETSEQDAQEMEAYETAILQELGFADPYAA 152 >gi|325956929|ref|YP_004292341.1| metalloprotease [Lactobacillus acidophilus 30SC] gi|325333494|gb|ADZ07402.1| Metalloprotease [Lactobacillus acidophilus 30SC] gi|327183709|gb|AEA32156.1| metalloprotease [Lactobacillus amylovorus GRL 1118] Length = 174 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + L+ +K K+N +E+S+ F D R +N +YR Sbjct: 5 DITYNDEVGFLDDKKRDWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDSIDLAAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LED G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEDYGLP 162 >gi|257090602|ref|ZP_05584963.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|312905134|ref|ZP_07764255.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0635] gi|256999414|gb|EEU85934.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|310631524|gb|EFQ14807.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0635] gi|315146687|gb|EFT90703.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX4244] gi|315579038|gb|EFU91229.1| conserved hypothetical protein TIGR00043 [Enterococcus faecalis TX0630] gi|323481401|gb|ADX80840.1| conserved hypothetical protein [Enterococcus faecalis 62] Length = 159 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIE 68 +D+ E E K + NL+ + G+ E+S+ FTD+ I+ Sbjct: 1 MDITFIDETEKVPTEE----------IKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQ 50 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANV 117 +N +YRG D PT+V+SF + LGD++++ E +A Sbjct: 51 VINRDYRGKDMPTDVISFALEDEGENELPIIFDDEELAELPRNLGDLIISTERAAEQAVE 110 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HGFLHL GYDH++ +D M GL++ IL+ G+ Sbjct: 111 YGHTLEREMGFLAVHGFLHLNGYDHMEPEDEKEMFGLQKEILDAYGLK 158 >gi|253997234|ref|YP_003049298.1| hypothetical protein Mmol_1868 [Methylotenera mobilis JLW8] gi|253983913|gb|ACT48771.1| protein of unknown function UPF0054 [Methylotenera mobilis JLW8] Length = 145 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 23/163 (14%) Query: 8 LPRL--DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +P+L +Q A + R + E+++ D+ Sbjct: 1 MPKLAATIQYASDADNIPSASLFRKWAKAALRV---------------DTEVTIRIVDAA 45 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++LN YRG D TNVL+FP ++GDI++ ++ EA K E H Sbjct: 46 EGQSLNNTYRGKDYATNVLTFPLTE------EPYLMGDIIICAPVVAAEAEAQHKSLEAH 99 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HL +HG LHL GYDH + A +MEGLE +I+ LG PY Sbjct: 100 YAHLTVHGILHLHGYDHEIEAQAELMEGLETAIVTKLGYASPY 142 >gi|325143901|gb|EGC66213.1| hypothetical protein TIGR00043 [Neisseria meningitidis M01-240013] gi|325206610|gb|ADZ02063.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis M04-240196] Length = 171 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMLAAGFPNPYQED 169 >gi|319761297|ref|YP_004125234.1| hypothetical protein Alide_0577 [Alicycliphilus denitrificans BC] gi|317115858|gb|ADU98346.1| protein of unknown function UPF0054 [Alicycliphilus denitrificans BC] Length = 150 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 22/170 (12%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M++ + L LQ A + A H L A+ + + ++ E+++ Sbjct: 1 MALNHLT---LSLQFARDAA-----THRAALPRHKVARWIRHALAV-------DAEITVR 45 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 S LN E+R D TNVL+F +L D+VL ++E EA GK Sbjct: 46 IVGSEEGRRLNREFRRKDYATNVLTFDYQ------QEPTVLADLVLCAPVVEREAREQGK 99 Query: 121 EFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 + H HL++HG LH G+DH ++DA ME E I+ +LG DPY Sbjct: 100 TLQEHYAHLLVHGALHAQGWDHETGEQDAQEMEAYETEIMRELGFADPYA 149 >gi|296166307|ref|ZP_06848744.1| probable metalloprotease [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898316|gb|EFG77885.1| probable metalloprotease [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 177 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V A+ N ELS+V D+ + L Sbjct: 1 MSIEVSNESGVDVSETELISVARFVIARMDVN----------PAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A+ G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAGQADAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEKEMFALQDRLLEEW 148 >gi|238019234|ref|ZP_04599660.1| hypothetical protein VEIDISOL_01098 [Veillonella dispar ATCC 17748] gi|237863933|gb|EEP65223.1| hypothetical protein VEIDISOL_01098 [Veillonella dispar ATCC 17748] Length = 158 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 8/140 (5%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + V + +S+ Y ++E+ E+S++ D+ +I LN EYRGID+PT+VLSF Sbjct: 19 AVIRKVCDEVSRVYGLEED--EMSILLCDNAKIHELNKEYRGIDRPTDVLSFALNEGDDY 76 Query: 95 GCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 S +LGD++++ E +A G FE L +L H LH+LGYDH++D+D M Sbjct: 77 EGSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKEM 136 Query: 152 EGLERSILEDLGI---NDPY 168 E IL +LG + PY Sbjct: 137 RTEEEFILGNLGYVREDAPY 156 >gi|237741714|ref|ZP_04572195.1| metal-binding protein [Fusobacterium sp. 4_1_13] gi|294785672|ref|ZP_06750960.1| metalloprotease [Fusobacterium sp. 3_1_27] gi|229429362|gb|EEO39574.1| metal-binding protein [Fusobacterium sp. 4_1_13] gi|294487386|gb|EFG34748.1| metalloprotease [Fusobacterium sp. 3_1_27] Length = 162 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + ++ + + LSL+ TD+ I+ +N EYR D PT+V+SF Sbjct: 33 IKKVLELEEVESDRPLYLSLLLTDNENIQIINREYRDKDAPTDVISFAYHETEDFNIGPY 92 Query: 100 M-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDI+++ E +E +A FE +++ HG LH+LGYDH++++D +M E +I Sbjct: 93 DTLGDIIISLERVEEQAGEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKIMRKREEAI 152 Query: 159 LEDLGIN 165 L G Sbjct: 153 LSSFGYT 159 >gi|218439664|ref|YP_002377993.1| hypothetical protein PCC7424_2713 [Cyanothece sp. PCC 7424] gi|218172392|gb|ACK71125.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 7424] Length = 180 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 12/176 (6%) Query: 1 MSVKKVNLPRLDLQIAVENALW----GDEIHLRTLCEVVFAKAVSNLIS--KGYFVKENI 54 M + + L L + +++ + +E + + + + Sbjct: 1 MRITFLKHSTLTLDLNLQDVYFCNTSTEETPTAPISSETWQSWFQTWLDILLPTLKSADS 60 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAY 108 ELSL TD I+ N +YR ++PT+VL+F L LGDI+++ Sbjct: 61 CELSLRLTDDQEIQFYNAQYRHKNQPTDVLAFAALEVDVPNLINESFDEPLYLGDIIISI 120 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + +A G L L HGFLHLLG+DH DD+ M + ++L ++G+ Sbjct: 121 DTAKRQATEQGHSLTQELAWLAAHGFLHLLGWDHPDDESLSAMLAQQETLLNNIGL 176 >gi|315645981|ref|ZP_07899102.1| hypothetical protein PVOR_11039 [Paenibacillus vortex V453] gi|315278742|gb|EFU42056.1| hypothetical protein PVOR_11039 [Paenibacillus vortex V453] Length = 165 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 19/169 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQ+A W +E + E A + L G E+ L F D +I L Sbjct: 1 MSLQLA-----WNNEQEEFHIGEEFIAVLEAILQKAGEAEGVTDGEVDLTFVDDGQIHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLMLGDIVLAYEIIEIEAN 116 N EYRGID+PT+VLSF ++D +LGDI+++ + ++++ Sbjct: 56 NREYRGIDRPTDVLSFAMNEITNDELEIIYELDEGEELESVPDVLGDIIISVQRAKLQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E L L +HGFLHLLGYDH D+ M G + ++L ++G+ Sbjct: 116 EYGHSLERELGFLFVHGFLHLLGYDHQDEASEAAMMGKQEAVLAEVGLT 164 >gi|303231491|ref|ZP_07318221.1| translation metalloprotein YbeY [Veillonella atypica ACS-049-V-Sch6] gi|302513834|gb|EFL55846.1| translation metalloprotein YbeY [Veillonella atypica ACS-049-V-Sch6] Length = 158 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 14/164 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI+ ++ + D E V K V + +S+ Y ++ + ELS++ D+ +I L Sbjct: 1 MHIQISYDDGIAKDAN-----IEEVIQK-VCDEVSRVYGLEND--ELSILLCDNKKIHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLV 127 N EYRGID+PT+VLSF S +LGD++L+ E +A G FE L Sbjct: 53 NKEYRGIDRPTDVLSFALNEGDDYEGSEEEHHLLGDMILSLERAHEQAVEYGHSFERELA 112 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPY 168 +L H LH+LGYDH+ D+D M E +L +LG + PY Sbjct: 113 YLTTHSCLHILGYDHMTDEDKKEMRTEEEFVLSNLGYVREDQPY 156 >gi|157964881|ref|YP_001499705.1| putative metalloprotease [Rickettsia massiliae MTU5] gi|157844657|gb|ABV85158.1| Putative metal-dependent hydrolase [Rickettsia massiliae MTU5] Length = 177 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 14/170 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + + + + + K N++ + F K ELS++ T+ I Sbjct: 11 MINVEIVRNYNKWREH---KQINKSLIKKITQNILLRFDNFSKIKQCELSILLTNVAEIL 67 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 TLN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 68 TLNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQ 127 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 128 QKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFSPY 177 >gi|329770521|ref|ZP_08261899.1| metalloprotease [Gemella sanguinis M325] gi|328836270|gb|EGF85939.1| metalloprotease [Gemella sanguinis M325] Length = 157 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+ +L + +K + +I E+SL F + I+ +N +YRG D PT+V Sbjct: 8 DDDNLVQDSTKNMLLELLESAAKHENINTDITEMSLSFVNKEEIQEINRDYRGKDVPTDV 67 Query: 84 LSFPTAFASSDGCSSLML-------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 +SF S + L GD+++ +I + +A F+ + L +HGFLH Sbjct: 68 ISFALNDEVESEISIIGLEDEINSIGDVIICVDIAKEQAEDYNHSFDREIGFLAVHGFLH 127 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGI 164 LLGYDH+ +D M + ILE+ G+ Sbjct: 128 LLGYDHMTPEDEKEMFEKQDKILEEFGL 155 >gi|186475179|ref|YP_001856649.1| hypothetical protein Bphy_0410 [Burkholderia phymatum STM815] gi|238689444|sp|B2JD86|RRMF_BURP8 RecName: Full=Probable rRNA maturation factor gi|184191638|gb|ACC69603.1| protein of unknown function UPF0054 [Burkholderia phymatum STM815] Length = 153 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 78/163 (47%), Gaps = 14/163 (8%) Query: 8 LPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 P+L L + W + L V+ I F EL++ F D+ Sbjct: 4 APKLSLNLQFPAGKAWPEHKSLLP------KATVAAWIKAALFAD---AELTVRFVDADE 54 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A + D + GD++L ++E EAN GK H Sbjct: 55 GRTLNRTYRGKDYATNVLTFAYAESEDDPVT----GDLILCCPVVEKEANEQGKPLGAHY 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH D+ +A ME +E +L LG DPYE Sbjct: 111 AHLLVHGTLHAQGYDHEDEDEAEEMEAIETEVLGKLGFPDPYE 153 >gi|261401807|ref|ZP_05987932.1| putative metalloprotease [Neisseria lactamica ATCC 23970] gi|269208047|gb|EEZ74502.1| putative metalloprotease [Neisseria lactamica ATCC 23970] Length = 171 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA +L + + F + + + GY ++S Sbjct: 3 RAKKYPFLTLQRQRFHLNFENA--SSAANLPSKHD--FYRWAWSALKSGY----RRADIS 54 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF + C S + GD+++ +++ EA Sbjct: 55 LILLDEEAARAYNCDYRGKDYATNVLSFALNEGETLPCQVSEKLYGDLIICPQVVLKEAA 114 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY D Sbjct: 115 EQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGYPNPYRED 169 >gi|325661630|ref|ZP_08150254.1| hypothetical protein HMPREF0490_00988 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472157|gb|EGC75371.1| hypothetical protein HMPREF0490_00988 [Lachnospiraceae bacterium 4_1_37FAA] Length = 164 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 75/162 (46%), Gaps = 21/162 (12%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + R L E V A+AV Y E++L+ T + I +N ++R I Sbjct: 7 EEGAYQLPFDCRKLAEKVIAEAVD------YEQCPYETEVNLLLTMNEEIREMNRQFREI 60 Query: 78 DKPTNVLSFPT---------AFASSD------GCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D+ T+VLSFP F D LMLGDIV++ E + +A G Sbjct: 61 DRATDVLSFPMVDYGTPGDFEFLEEDDSYFHPESGELMLGDIVISKEKVTAQAEEYGHTE 120 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E L+ H LHL GYDH+++ + VME +R ILE L I Sbjct: 121 EREFAFLVAHSMLHLFGYDHMEEDERAVMEQKQREILERLNI 162 >gi|239998277|ref|ZP_04718201.1| Putative metalloprotease NGO0145 [Neisseria gonorrhoeae 35/02] Length = 171 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++ L+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEYLR----ADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 88 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|240013460|ref|ZP_04720373.1| hypothetical protein NgonD_02219 [Neisseria gonorrhoeae DGI18] gi|240015899|ref|ZP_04722439.1| hypothetical protein NgonFA_01822 [Neisseria gonorrhoeae FA6140] gi|240080039|ref|ZP_04724582.1| hypothetical protein NgonF_01825 [Neisseria gonorrhoeae FA19] gi|240112248|ref|ZP_04726738.1| hypothetical protein NgonM_01454 [Neisseria gonorrhoeae MS11] gi|240114993|ref|ZP_04729055.1| hypothetical protein NgonPID1_01852 [Neisseria gonorrhoeae PID18] gi|240117278|ref|ZP_04731340.1| hypothetical protein NgonPID_02274 [Neisseria gonorrhoeae PID1] gi|240120531|ref|ZP_04733493.1| hypothetical protein NgonPI_01904 [Neisseria gonorrhoeae PID24-1] gi|240127539|ref|ZP_04740200.1| hypothetical protein NgonS_02629 [Neisseria gonorrhoeae SK-93-1035] gi|260441192|ref|ZP_05795008.1| hypothetical protein NgonDG_08936 [Neisseria gonorrhoeae DGI2] gi|268598309|ref|ZP_06132476.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268600661|ref|ZP_06134828.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268602973|ref|ZP_06137140.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268685916|ref|ZP_06152778.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|145572757|sp|Q5FA84|RRMF_NEIG1 RecName: Full=Probable rRNA maturation factor gi|268582440|gb|EEZ47116.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268584792|gb|EEZ49468.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268587104|gb|EEZ51780.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268626200|gb|EEZ58600.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 171 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++ L+ D N +YRG D TNVLSF Sbjct: 32 AERDFYRWAWSALKNEYLR----ADIGLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH+ D +A Sbjct: 88 EILPCQVSERLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGTLHLMGYDHIKDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY D Sbjct: 148 IMEAEEIRLMRAAGYPNPYRED 169 >gi|295398010|ref|ZP_06808066.1| metal-dependent hydrolase [Aerococcus viridans ATCC 11563] gi|294973768|gb|EFG49539.1| metal-dependent hydrolase [Aerococcus viridans ATCC 11563] Length = 158 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 8/129 (6%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-------- 96 + GY ++LSL + I +N YR ID+PT+V+SF D Sbjct: 28 AAGYLKLTGEIDLSLTIVNDAEIHEINKTYRNIDRPTDVISFAIEDLGEDELAVMGLPED 87 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LGD+ ++ + +A G FE L L +HGFLHL GYDH+++ D M GL++ Sbjct: 88 MPRELGDLFISIDKAREQAADYGHSFERELGFLAVHGFLHLNGYDHMNEVDEKEMFGLQK 147 Query: 157 SILEDLGIN 165 IL+ G+ Sbjct: 148 EILDAYGLK 156 >gi|269798052|ref|YP_003311952.1| hypothetical protein Vpar_0991 [Veillonella parvula DSM 2008] gi|269094681|gb|ACZ24672.1| protein of unknown function UPF0054 [Veillonella parvula DSM 2008] Length = 158 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 8/140 (5%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + V + +S+ Y ++E+ E+S++ D+ +I LN EYRGID+PT+VLSF Sbjct: 19 AIIRKVCDEVSRVYGLEED--EMSILLCDNAKIHELNKEYRGIDRPTDVLSFALNEGDDY 76 Query: 95 GCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 S +LGD++++ E +A G FE L +L H LH+LGYDH++D++ M Sbjct: 77 EGSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEEKKEM 136 Query: 152 EGLERSILEDLGI---NDPY 168 E IL +LG + PY Sbjct: 137 RTEEEFILGNLGYVREDAPY 156 >gi|163857969|ref|YP_001632267.1| putative metalloprotease [Bordetella petrii DSM 12804] gi|226701660|sp|A9I000|RRMF_BORPD RecName: Full=Probable rRNA maturation factor gi|163261697|emb|CAP43999.1| conserved hypothetical protein [Bordetella petrii] Length = 155 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 69/161 (42%), Gaps = 8/161 (4%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P L L + E L +A+ + ++ + ELSL Sbjct: 3 PELSLSV----QYGVAEPRLPRWRLRRWAQRALDGAARDGLAECARAELSLRLVGQAEGR 58 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F GDIV+ ++ EA GK +H H Sbjct: 59 RLNHAYRERDYATNVLTFEYGTDPL----GTARGDIVICVPVLAREAREQGKTLLDHAAH 114 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L +HG LH LGYDH+ +DA ME LE +IL + I DPY Sbjct: 115 LTVHGVLHALGYDHIKARDARRMEALETAILTGMRIADPYA 155 >gi|322383672|ref|ZP_08057423.1| metalloprotease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151884|gb|EFX44827.1| metalloprotease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 170 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 19/162 (11%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 W +E + + + + L G E++L F ++ I LN +YRGID+PT Sbjct: 7 WTNEQEVLDMKQEWIDRLEQLLALAGKEEGIEDGEVTLTFVNNDMIHELNRQYRGIDRPT 66 Query: 82 NVLSFPTAFASSDGCSS-------------------LMLGDIVLAYEIIEIEANVLGKEF 122 +VLSF D LGDI+++ +A G F Sbjct: 67 DVLSFAMQEMGEDELIISYGELDEDGIEAVLEDKIVEPLGDIIISIPKTIEQAEEYGHSF 126 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E L L +HGFLHL+GYDH + + M + IL G+ Sbjct: 127 ERELGFLFVHGFLHLVGYDHQTEDEEKKMFAKQELILSQAGL 168 >gi|144899563|emb|CAM76427.1| Uncharacterized protein family UPF005 [Magnetospirillum gryphiswaldense MSR-1] Length = 172 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 8/165 (4%) Query: 10 RLDLQIAVENALWGDEIH-LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 +D+ I++E+ W + LC + ++ L + G VE+S+V T + Sbjct: 4 EIDVAISIEDEAWTQALPGAEELCRTMV---LATLQAAGGDFDGPPVEVSVVLTSDTAVH 60 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN ++RG DKPTNVLSF + ++LGD+++AY + EA GK +H Sbjct: 61 ALNRDWRGQDKPTNVLSFAGLDDDEAPVVVGAPVLLGDVIMAYGVCTQEARDQGKTLAHH 120 Query: 126 LVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LHLLG+DH D+ +A ME LE IL GI DPY Sbjct: 121 AAHLVVHGTLHLLGWDHEEDETEAEEMERLETVILSGFGIADPYA 165 >gi|293607163|ref|ZP_06689505.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814497|gb|EFF73636.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 160 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIV 105 K V + ELSL + LN ++R D TNVL+F + + GDIV Sbjct: 36 KDGLVDFSAAELSLRLVGAAEGRRLNRDFRQRDYATNVLTFEYGVDPA----GVARGDIV 91 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++ EA K H HL IHG LH LGYDH+ +DA M+ LE + L +GI Sbjct: 92 MCVPVLVREAREQRKPLLEHAAHLTIHGVLHSLGYDHIKARDAKRMDALETATLAQMGIA 151 Query: 166 DPY 168 DPY Sbjct: 152 DPY 154 >gi|167772060|ref|ZP_02444113.1| hypothetical protein ANACOL_03434 [Anaerotruncus colihominis DSM 17241] gi|167665858|gb|EDS09988.1| hypothetical protein ANACOL_03434 [Anaerotruncus colihominis DSM 17241] Length = 170 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 7/146 (4%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 ++ + + ++ + ++ F E+S+ F ++ +I LN EYR D PT+VL Sbjct: 15 DVKIPSGIRLLIRRCCHAVLVAENF--HESAEISVSFVNNEQIRQLNAEYRQKDAPTDVL 72 Query: 85 SFPTA----FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 SFP + + +L LGDIV++ E +A + G + + L +H LHLLGY Sbjct: 73 SFPLGSGGKYDRNMETGALQLGDIVISVEKAVEQARMYGHSLQREIGFLTVHSMLHLLGY 132 Query: 141 DHVDDK-DACVMEGLERSILEDLGIN 165 DH + M E S+L LG+ Sbjct: 133 DHEAGGLEMVRMREKEESVLASLGLE 158 >gi|319795922|ref|YP_004157562.1| hypothetical protein Varpa_5295 [Variovorax paradoxus EPS] gi|315598385|gb|ADU39451.1| protein of unknown function UPF0054 [Variovorax paradoxus EPS] Length = 152 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 7/114 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++ D+ + LN E+RG D TNVL+F A S + + D+VL ++ EA Sbjct: 43 EITVRIVDADEGQRLNREFRGKDYATNVLTFDYAQ------SPVAMADLVLCAPVVAREA 96 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 K H HL++HG LH G+DH + DA ME E IL +LGI DPY Sbjct: 97 KEQRKTLAAHYAHLLVHGTLHAQGWDHETSEADADEMEAYEIQILAELGIRDPY 150 >gi|326203510|ref|ZP_08193374.1| protein of unknown function UPF0054 [Clostridium papyrosolvens DSM 2782] gi|325986330|gb|EGD47162.1| protein of unknown function UPF0054 [Clostridium papyrosolvens DSM 2782] Length = 161 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +EN ++ + E + K + + + E+S++ D + I +N E+ Sbjct: 2 IIIENGQ--AKVIIDKKIENLIEKTIKMCMKSEQL--DKDYEVSVLIVDDNEIRDINREH 57 Query: 75 RGIDKPTNVLSFPT-----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 R IDK T+VLSFP L+LGDI+++ E + +A G F+ Sbjct: 58 RDIDKSTDVLSFPLVDFKDGKLISDEGDYDLEMGELILGDIIISAETAQRQAEAYGHSFD 117 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L H HLLGYDH++ + +M + IL+++G+ Sbjct: 118 REMAFLTAHSCFHLLGYDHMEKNEEEIMFKKQEDILKEMGLP 159 >gi|261393091|emb|CAX50688.1| conserved hypothetical protein [Neisseria meningitidis 8013] gi|325202673|gb|ADY98127.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis M01-240149] gi|325203629|gb|ADY99082.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis M01-240355] gi|325207581|gb|ADZ03033.1| conserved hypothetical protein TIGR00043 [Neisseria meningitidis NZ-05/33] Length = 171 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 SERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMLAAGFPNPYQED 169 >gi|300024988|ref|YP_003757599.1| hypothetical protein Hden_3487 [Hyphomicrobium denitrificans ATCC 51888] gi|299526809|gb|ADJ25278.1| protein of unknown function UPF0054 [Hyphomicrobium denitrificans ATCC 51888] Length = 171 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 4 KKVNLPR-LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + ++PR +++ + ++ W L A L +++ + Sbjct: 5 PQPSIPRVIEVDVVEDDGDWSSLPDAPDLIARAAAAVAQELGDSDGSGL-----VAVALS 59 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 +E LN ++RG KPTNVLSFP + D +GD++LA E + EA+ G Sbjct: 60 SDASVEVLNGQFRGKPKPTNVLSFPAGEGAPDD----FIGDVILAAETVRREADEQGVSP 115 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+HL HL++HG LHL G+DH+ +A ME +E SIL LG+ +PY Sbjct: 116 EHHLQHLVVHGILHLFGFDHMSADEAEHMEAIEISILSKLGVANPY 161 >gi|58337484|ref|YP_194069.1| hypothetical protein LBA1202 [Lactobacillus acidophilus NCFM] gi|227904120|ref|ZP_04021925.1| metal-dependent hydrolase [Lactobacillus acidophilus ATCC 4796] gi|62901404|sp|Q5FJT6|RRMF_LACAC RecName: Full=Probable rRNA maturation factor gi|58254801|gb|AAV43038.1| hypothetical protein LBA1202 [Lactobacillus acidophilus NCFM] gi|227868139|gb|EEJ75560.1| metal-dependent hydrolase [Lactobacillus acidophilus ATCC 4796] Length = 174 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + L+ +K K+N +E+S+ F + R +N +YR Sbjct: 5 DITYNDEVGFLDDEKRDWKTWIMKLLLLAKKEIGKDNNLEMSINFVNEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDSIDLAAFKDDPDFQEDIGDLFMCPSVISRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HGFLHL GYDH++ +A M G++ +LED G+ Sbjct: 125 YTIVHGFLHLNGYDHIEPDEAKEMFGIQGKVLEDYGLP 162 >gi|282850279|ref|ZP_06259658.1| metalloprotein, YbeY/ UPF0054 family [Veillonella parvula ATCC 17745] gi|282579772|gb|EFB85176.1| metalloprotein, YbeY/ UPF0054 family [Veillonella parvula ATCC 17745] Length = 158 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 8/140 (5%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + V + +S+ Y ++E+ E+S++ D+ +I LN EYRGID+PT+VLSF Sbjct: 19 AVIRKVCDEVSRVYGLEED--EMSILLCDNAKIHKLNKEYRGIDRPTDVLSFALNEGDDY 76 Query: 95 GCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 S +LGD++++ E +A G FE L +L H LH+LGYDH++D+D M Sbjct: 77 EGSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKEM 136 Query: 152 EGLERSILEDLGI---NDPY 168 E IL +LG + PY Sbjct: 137 RIEEEFILGNLGYVREDAPY 156 >gi|325681532|ref|ZP_08161057.1| translation metalloprotein YbeY [Ruminococcus albus 8] gi|324106799|gb|EGC01090.1| translation metalloprotein YbeY [Ruminococcus albus 8] Length = 170 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 11/156 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I+ E + +R L + Y N E+S+ F + +I LN E+ Sbjct: 8 ISNEQTEVKIPVGIRMLVRRCCHAVLE------YESFGNDAEVSVSFVNDSQIHELNKEH 61 Query: 75 RGIDKPTNVLSFPTAFAS----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 R ID+ T+VLSFP + + +LGDIV++ E +A V G E + L Sbjct: 62 RNIDRSTDVLSFPLGEDGVYDINYETGASLLGDIVISLETATKQAQVYGHSLEREVGFLT 121 Query: 131 IHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN 165 +H LHLLGYDH + +M E +ILE LGI+ Sbjct: 122 VHSMLHLLGYDHEESSLQERIMREKEEAILEQLGIS 157 >gi|19704081|ref|NP_603643.1| metal-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|26006903|sp|Q8R5X4|RRMF_FUSNN RecName: Full=Probable rRNA maturation factor gi|19714281|gb|AAL94942.1| Hypothetical Metal-Binding Protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 162 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 1/127 (0%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + +++ + + LSL+ TD+ I+ +N EYR D PT+V+SF S Sbjct: 33 IKKVLNLEKIESDRPLYLSLLLTDNENIQVINREYRDKDAPTDVISFAYHETEDFNIGSY 92 Query: 100 M-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDI+++ E +E +A+ FE +++ HG LH+LGYDH++++D +M E +I Sbjct: 93 DTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEEDKKLMREREEAI 152 Query: 159 LEDLGIN 165 L G Sbjct: 153 LSSFGYT 159 >gi|283797897|ref|ZP_06347050.1| putative metalloprotease [Clostridium sp. M62/1] gi|291074362|gb|EFE11726.1| putative metalloprotease [Clostridium sp. M62/1] gi|295091897|emb|CBK78004.1| conserved hypothetical protein TIGR00043 [Clostridium cf. saccharolyticum K10] gi|295115184|emb|CBL36031.1| conserved hypothetical protein TIGR00043 [butyrate-producing bacterium SM4/1] Length = 165 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 23/171 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI + E L E + + V L + Y E++++ TD I + Sbjct: 1 MTIQI-----EYEAEKKLNLPYETIIREVV--LAALDYEACPYEAEVNVLLTDDEEIHRI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS----------------SDGCSSLMLGDIVLAYEIIEIE 114 N E+RGID+ T+VLSFP A + L+LGDIV++ + +E + Sbjct: 54 NREFRGIDRATDVLSFPMADYEQPAEFEKLEERPEDYFNPETGELLLGDIVISVDKVEEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 A G L L H LHL GYDH+++++ VME + +IL G Sbjct: 114 AEKYGHSEARELAFLTAHSMLHLFGYDHMEEEERLVMEKKQEAILSLKGYT 164 >gi|294793789|ref|ZP_06758926.1| putative metalloprotease [Veillonella sp. 3_1_44] gi|294455359|gb|EFG23731.1| putative metalloprotease [Veillonella sp. 3_1_44] Length = 158 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 8/140 (5%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + V + +S+ Y + E+ E+S++ ++ +I LN EYRGID+PT+VLSF Sbjct: 19 AVIRKVCDEVSRVYGLDED--EMSILLCNNAKIHELNKEYRGIDRPTDVLSFALNEGDDY 76 Query: 95 GCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 S +LGD++++ E +A G FE L +L H LH+LGYDH++D+D M Sbjct: 77 EGSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKEM 136 Query: 152 EGLERSILEDLGI---NDPY 168 E IL +LG + PY Sbjct: 137 RTEEEFILGNLGYVREDAPY 156 >gi|121603421|ref|YP_980750.1| hypothetical protein Pnap_0508 [Polaromonas naphthalenivorans CJ2] gi|145558831|sp|A1VJK1|RRMF_POLNA RecName: Full=Probable rRNA maturation factor gi|120592390|gb|ABM35829.1| protein of unknown function UPF0054 [Polaromonas naphthalenivorans CJ2] Length = 151 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 15/160 (9%) Query: 12 DLQIAVENALWGDE-IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L ++++ + D +H L A+ + + + ++ E+++ + + L Sbjct: 5 SLSLSLQFGKFPDAALHRAALPRHSVARWIRHAL-------QSDAEITVRIVGAEEGQAL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR D TNVL+F A + D+VL ++ EA K + H HL+ Sbjct: 58 NRDYRAKDYATNVLTFDYTQA------PYVTADLVLCAPVVAKEAQDNQKTLQAHYAHLL 111 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +HG LH GYDH ++DA ME LE IL LG ++PY Sbjct: 112 VHGTLHAQGYDHETGEEDAEEMEALEIEILAGLGFDNPYR 151 >gi|331084774|ref|ZP_08333862.1| hypothetical protein HMPREF0987_00165 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410868|gb|EGG90290.1| hypothetical protein HMPREF0987_00165 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 164 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 75/162 (46%), Gaps = 21/162 (12%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + R L E V A+AV Y E++L+ T + I +N E+R I Sbjct: 7 EEGAYQLPFDCRKLAEKVIAEAVD------YEQCPYETEVNLLLTMNEEIREMNREFREI 60 Query: 78 DKPTNVLSFPT---------AFASSD------GCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D+ T+VLSFP F D LMLGDIV++ E + +A G Sbjct: 61 DRATDVLSFPMVDYGTPGDFEFLEEDDSYFHPESGELMLGDIVISKEKVTAQAEEYGHTE 120 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 E L+ H LHL GYDH+++ + VME +R ILE L I Sbjct: 121 EREFAFLVAHSMLHLFGYDHMEEDERAVMEQKQREILERLNI 162 >gi|326386703|ref|ZP_08208324.1| hypothetical protein Y88_2596 [Novosphingobium nitrogenifigens DSM 19370] gi|326208756|gb|EGD59552.1| hypothetical protein Y88_2596 [Novosphingobium nitrogenifigens DSM 19370] Length = 164 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 61/171 (35%), Positives = 81/171 (47%), Gaps = 14/171 (8%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P L++ I + +W + L A + +SLV D Sbjct: 1 MTAPTLEIDI---DPVWSETTDWENLANAAAQAAAKVAPELAHESML----VSLVLADDE 53 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 + LN ++R DKPTNVLSFP A+ + MLGD++LA+ + EA G Sbjct: 54 EVHELNKQWRAKDKPTNVLSFPMLSREEVLSAAEAPDAPAMLGDLILAHGVCAREAVEKG 113 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 + H HLI+HG LHL GYDH + DA MEGLER L LGI DPY Sbjct: 114 VTQDAHTSHLIVHGLLHLAGYDHETGEADAEEMEGLERKALALLGIADPYA 164 >gi|15893065|ref|NP_360779.1| putative metalloprotease [Rickettsia conorii str. Malish 7] gi|238650628|ref|YP_002916480.1| putative metalloprotease [Rickettsia peacockii str. Rustic] gi|26006916|sp|Q92GI1|RRMF_RICCN RecName: Full=Probable rRNA maturation factor gi|259646950|sp|C4K1I1|RRMF_RICPU RecName: Full=Probable rRNA maturation factor gi|15620268|gb|AAL03680.1| unknown [Rickettsia conorii str. Malish 7] gi|238624726|gb|ACR47432.1| putative metalloprotease [Rickettsia peacockii str. Rustic] Length = 167 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 14/170 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + + + + + K N++ + F K ELS++ T++ I Sbjct: 1 MINVEIVRNYNKWREH---KQINKSLIKKITQNILLRFDNFSKIKQFELSILLTNAAEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 TLN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 58 TLNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQ 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 118 HKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFPPY 167 >gi|241759364|ref|ZP_04757470.1| conserved hypothetical protein [Neisseria flavescens SK114] gi|241320500|gb|EER56797.1| conserved hypothetical protein [Neisseria flavescens SK114] Length = 171 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA +L + E F + + + Y +S Sbjct: 3 RAKQYPFLSLQRQRFHLNFENA--SSAANLPS--ERDFYRWTWSALKNEY----RRAGIS 54 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF D S + GD+V+ +++ EA Sbjct: 55 LILLDEEEARDYNRDYRGKDYATNVLSFALNEGEILPDQFSDGLYGDLVICPQVVLKEAA 114 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY+ D Sbjct: 115 EQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAAGFPNPYQED 169 >gi|225848714|ref|YP_002728877.1| hypothetical protein SULAZ_0899 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644244|gb|ACN99294.1| conserved hypothetical protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 150 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 81/138 (58%), Gaps = 6/138 (4%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E++ + + + KAV ++ ++ +E+S+ TD+ I+++N E+R DKPT+VL Sbjct: 10 EVYDKEITKEFVKKAVEQILKN---LQLENIEISITLTDNDTIKSINKEWRNKDKPTDVL 66 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP F + G +LGD++++ + +A +G ++ +V L+ HG LHLLGYDH Sbjct: 67 SFP--FGDTIGYKYRVLGDVIISLPYAKKQAQEIGFSYKQEIVRLLTHGILHLLGYDHET 124 Query: 145 -DKDACVMEGLERSILED 161 ++DA VM L+ I E Sbjct: 125 NEEDAKVMFNLQDKIFEK 142 >gi|294791926|ref|ZP_06757074.1| putative metalloprotease [Veillonella sp. 6_1_27] gi|294457156|gb|EFG25518.1| putative metalloprotease [Veillonella sp. 6_1_27] Length = 158 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 8/140 (5%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + V + +S+ Y ++E+ E+S++ ++ +I LN EYRGID+PT+VLSF Sbjct: 19 AVIRKVCDEVSRVYGLEED--EMSILLCNNAKIHELNKEYRGIDRPTDVLSFALNEGDDY 76 Query: 95 GCSSL---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 S +LGD++++ E +A G FE L +L H LH+LGYDH++D+D M Sbjct: 77 EGSEEEHHLLGDMIISLERTREQAIEYGHSFERELAYLTTHSCLHILGYDHMNDEDKKEM 136 Query: 152 EGLERSILEDLGI---NDPY 168 E IL +LG + PY Sbjct: 137 RTEEEFILGNLGYVREDAPY 156 >gi|209517502|ref|ZP_03266342.1| protein of unknown function UPF0054 [Burkholderia sp. H160] gi|209502035|gb|EEA02051.1| protein of unknown function UPF0054 [Burkholderia sp. H160] Length = 153 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 8 LPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 P+L L + A W + L V+ I F EL++ F D+ Sbjct: 4 APKLTLNLQFPAAKAWPEHKALLP------RATVAGWIKAALFAD---GELTIRFVDAEE 54 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 55 GRTLNRTYRGKDYATNVLTFAYAESEDDPVT----GDLILCCPVVEQEAAEQGKPLAAHY 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME LE IL+ LG DPY+ Sbjct: 111 AHLLVHGTLHAQGYDHEVEEEAEEMEALETEILDKLGFPDPYQ 153 >gi|312622489|ref|YP_004024102.1| hypothetical protein Calkro_1427 [Caldicellulosiruptor kronotskyensis 2002] gi|312202956|gb|ADQ46283.1| protein of unknown function UPF0054 [Caldicellulosiruptor kronotskyensis 2002] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 12/161 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I ++N D++ + + +++ N I F++E E+S+ D+ I+ LN Sbjct: 1 MKIFIQNQQ--DKVDIDQHISKIIEESIVNTI--KVFLEEENFEISVFIVDNSFIKELNR 56 Query: 73 EYRGIDKPTNVLSFPTAFASSDGC--------SSLMLGDIVLAYEIIEIEANVLGKEFEN 124 YR ++K T+VLSFP + + LGDIV++ E +A G E Sbjct: 57 NYRNVNKETDVLSFPIFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAKEFGHSLER 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +L +H LHLLG+DH+++ D VM E IL+ +G+ Sbjct: 117 EIAYLTVHSVLHLLGFDHIEEDDRKVMREYEEQILQSMGLT 157 >gi|121610982|ref|YP_998789.1| hypothetical protein Veis_4066 [Verminephrobacter eiseniae EF01-2] gi|145558824|sp|A1WQ64|RRMF_VEREI RecName: Full=Probable rRNA maturation factor gi|121555622|gb|ABM59771.1| protein of unknown function UPF0054 [Verminephrobacter eiseniae EF01-2] Length = 154 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRT-LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 +P L ++++ + R+ L + + + + ++ E+++ + Sbjct: 1 MPLKPLALSLQWGRFDAAAAQRSALPRHLIRRWIRHALT-------TDAEITVRIVGADE 53 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN YR D TNVL+F + A L+ D++L +IE EA GK + H Sbjct: 54 GRQLNRTYRNKDYATNVLTFVYSQA------PLVTADLLLCAPVIEREAQQQGKHLQAHY 107 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+++HG LH G+DH DA M+ E I++ LG DPY Sbjct: 108 AHMLVHGTLHAQGWDHEGSADADAMQARETQIMQALGFADPYA 150 >gi|309379621|emb|CBX21792.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 171 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA +L + + F + + + GY ++ Sbjct: 3 RAKKYPFLTLQRQRFHLNFENA--SSAANLPSKHD--FYRWAWSALKSGY----RRADIG 54 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF C S + GD+++ +++ EA Sbjct: 55 LILLDEEAARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDLIICPQVVLKEAA 114 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL IHG LHL+GYDH++D +A +ME E ++ G +PY D Sbjct: 115 EQGKTPERHFAHLTIHGVLHLMGYDHIEDDEAEIMEAEEIRLMRAAGYPNPYRED 169 >gi|325135872|gb|EGC58484.1| hypothetical protein TIGR00043 [Neisseria meningitidis M0579] Length = 171 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + + Y ++SL+ D N +YRG D TNVLSF Sbjct: 32 SERDFYRWAWSALKNEY----RRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEG 87 Query: 92 SSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 C S + GD+++ +++ EA GK E H HL IHG LHL+GYDH++D +A Sbjct: 88 EILPCQVSEKLYGDLIICPQVVLKEAAEQGKTPERHFTHLTIHGVLHLMGYDHIEDDEAE 147 Query: 150 VMEGLERSILEDLGINDPYEVD 171 +ME E ++ G +PY+ D Sbjct: 148 IMEAEEIRLMLAAGFPNPYQED 169 >gi|22299128|ref|NP_682375.1| putative metalloprotease [Thermosynechococcus elongatus BP-1] gi|29428189|sp|Q8DIK0|RRMF_THEEB RecName: Full=Probable rRNA maturation factor gi|22295310|dbj|BAC09137.1| tlr1585 [Thermosynechococcus elongatus BP-1] Length = 160 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 2/146 (1%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + ++ + + EL+L T I+ LN +YR D PT+V Sbjct: 11 DPALPAEVTALPWERWFRTWMAMVEPTQGKVYELTLRLTTDAAIQALNQQYRDRDTPTDV 70 Query: 84 LSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 L+F T + LGDI+++ + +A G + L HG LHLLG+D Sbjct: 71 LAFATRDGALPLPLGEPEYLGDIIISGDTARRQAAESGHTLSIEIAWLACHGLLHLLGWD 130 Query: 142 HVDDKDACVMEGLERSILEDLGINDP 167 H D+ + M + LE +G+ P Sbjct: 131 HPDEAELARMLTQQAQCLEAVGLTPP 156 >gi|309790640|ref|ZP_07685193.1| protein of unknown function UPF0054 [Oscillochloris trichoides DG6] gi|308227306|gb|EFO80981.1| protein of unknown function UPF0054 [Oscillochloris trichoides DG6] Length = 161 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 5/116 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEI 110 E+ ++ TD I TLN +YRG+D PT+VLSF S G LGDI ++Y+ Sbjct: 43 CEVGVLITDDAHIHTLNRDYRGVDAPTDVLSFADDGPPSAFVVAGSGPRYLGDIAISYQR 102 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 + +A G L +L HG LHLLGYDH +DA M E +++ +LG++ Sbjct: 103 VLAQAAEYGHSPARELAYLATHGTLHLLGYDHERGPEDAAAMRLREETVMAELGLS 158 >gi|172056859|ref|YP_001813319.1| hypothetical protein Exig_0822 [Exiguobacterium sibiricum 255-15] gi|229890252|sp|B1YL70|RRMF_EXIS2 RecName: Full=Probable rRNA maturation factor gi|171989380|gb|ACB60302.1| protein of unknown function UPF0054 [Exiguobacterium sibiricum 255-15] Length = 158 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 8/153 (5%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N DE L T ++ +A+ + ++ N ELS+ F + I+ +N E+RG D Sbjct: 2 NIYMTDEGKLLTEEQLKLVEAILVYTATEEKIEANS-ELSVTFVTNDEIQQINREWRGKD 60 Query: 79 KPTNVLSFPTAFASSDGC-------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 + T+V+SF D ++LGD++++ E +A G FE L L + Sbjct: 61 QATDVISFAMDELGEDEIDFELLEDEPVVLGDLIISVERCREQAAEYGNHFERELGFLAV 120 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 HGFLHLLGYDH++ D +M + IL + Sbjct: 121 HGFLHLLGYDHIEKADEDIMTKRQEEILHHFEL 153 >gi|331001260|ref|ZP_08324886.1| translation metalloprotein YbeY [Parasutterella excrementihominis YIT 11859] gi|329568987|gb|EGG50783.1| translation metalloprotein YbeY [Parasutterella excrementihominis YIT 11859] Length = 156 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 9/142 (6%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +L ++ + IS+ EN ++++ F + LN YR D TNVL+F Sbjct: 13 NLAHFPQLPSRSKIQRWISRAL---ENDAQITVRFVEEEEGRELNKTYRSKDYATNVLTF 69 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 ++ D+V+ ++E E+ K E H+ HL++HG LH GYDH+DD+ Sbjct: 70 DYQ------IEPVVEADLVICVPVLEKESKDQNKTLEEHMAHLLVHGTLHAQGYDHMDDE 123 Query: 147 DACVMEGLERSILEDLGINDPY 168 +A VME E +L DLG + PY Sbjct: 124 EAEVMEQRETDVLVDLGFDVPY 145 >gi|241766518|ref|ZP_04764382.1| protein of unknown function UPF0054 [Acidovorax delafieldii 2AN] gi|241363251|gb|EER58810.1| protein of unknown function UPF0054 [Acidovorax delafieldii 2AN] Length = 152 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 15/159 (9%) Query: 13 LQIAVENALWGDEIHLRT-LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 L ++++ + D R L + + + ++ E+++ D+ + LN Sbjct: 6 LSLSLQFGRFEDAAAHRAVLPRHKVTRWIRHALAA-------DAEITVRIVDADEGQALN 58 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +YR D TNVL+F A +++ D+VL ++E EA K E H HL++ Sbjct: 59 RDYRHKDYATNVLTFDYAQ------EPVVMADLVLCAPVVEREAREQNKTLEEHYAHLLV 112 Query: 132 HGFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDPYE 169 HG LH G+DH DA ME E IL+ LG DPY Sbjct: 113 HGTLHAQGWDHETSATDAEEMEAYETDILQALGFADPYA 151 >gi|227878695|ref|ZP_03996609.1| metal-dependent hydrolase [Lactobacillus crispatus JV-V01] gi|256843289|ref|ZP_05548777.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256850354|ref|ZP_05555782.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|262046498|ref|ZP_06019460.1| metal-dependent hydrolase [Lactobacillus crispatus MV-3A-US] gi|293380656|ref|ZP_06626707.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus crispatus 214-1] gi|295693064|ref|YP_003601674.1| metalloprotease [Lactobacillus crispatus ST1] gi|312978180|ref|ZP_07789924.1| putative metalloprotease [Lactobacillus crispatus CTV-05] gi|227861710|gb|EEJ69315.1| metal-dependent hydrolase [Lactobacillus crispatus JV-V01] gi|256614709|gb|EEU19910.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256712751|gb|EEU27744.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|260573369|gb|EEX29927.1| metal-dependent hydrolase [Lactobacillus crispatus MV-3A-US] gi|290922784|gb|EFD99735.1| metalloprotein, YbeY/ UPF0054family [Lactobacillus crispatus 214-1] gi|295031170|emb|CBL50649.1| Metalloprotease [Lactobacillus crispatus ST1] gi|310894898|gb|EFQ43968.1| putative metalloprotease [Lactobacillus crispatus CTV-05] Length = 174 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + + L+ +K K+N +E+S+ F D R +N +YR Sbjct: 5 DITYNDEVGFLDDEKRNWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDSIDLAAFADDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HGFLHL GYDH+ +A M G++ +LED G+ Sbjct: 125 YTIVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEDYGLP 162 >gi|62901442|sp|Q74AR8|RRMF_GEOSL RecName: Full=Probable rRNA maturation factor Length = 178 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 10/161 (6%) Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTD 63 K R L++A+ N I R L + V+ I ++ ELS+V T Sbjct: 20 TKRPEERRPLKVAITNRQKRHPIGTRRL------RKVAETILGALGYPDS--ELSVVITG 71 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 I +N +Y G D+PTNV+SF + +LGD++++ + EA G F Sbjct: 72 DLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREAEEAGIAFW 131 Query: 124 NHLVHLIIHGFLHLLGYDHV--DDKDACVMEGLERSILEDL 162 + L L++HG LH+ GYDH + +A ME ER I L Sbjct: 132 SRLCFLLLHGTLHITGYDHERSGEAEARRMEAKEREIFALL 172 >gi|262068037|ref|ZP_06027649.1| putative metalloprotease [Fusobacterium periodonticum ATCC 33693] gi|291378259|gb|EFE85777.1| putative metalloprotease [Fusobacterium periodonticum ATCC 33693] Length = 162 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 2/156 (1%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 LD +EN + + I + + + ++ E + LS++ TD+ I+ + Sbjct: 5 LDFSCELENEKYSEFID-KLYEDSYLENYIKKVLEIEEVESERPLYLSVLLTDNKNIQVI 63 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVHL 129 N EYR D PT+V+SF LGDI+++ E +E +++ F+ ++ Sbjct: 64 NREYRDKDAPTDVISFAYHETDDFNIGPYDTLGDIIISLERVEEQSSEYNHSFKREFYYV 123 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + HG LH+LGYDH+++ D VM E +IL G Sbjct: 124 LTHGILHILGYDHIEEDDKKVMREREEAILSSFGYT 159 >gi|157826441|ref|YP_001495505.1| putative metalloprotease [Rickettsia bellii OSU 85-389] gi|166229380|sp|A8GUH2|RRMF_RICB8 RecName: Full=Probable rRNA maturation factor gi|157801745|gb|ABV78468.1| hypothetical protein A1I_00310 [Rickettsia bellii OSU 85-389] Length = 183 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 26/182 (14%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I + W + + + + + K +S+ F + ELS++ T++ I Sbjct: 1 MINVEIIKNYSKWREH---KQINKALIKKITQKTLSQFDNFSEIKQFELSILLTNNEEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------------------ASSDGCSSLMLGDIVL 106 TLN ++R I+K TNVLSFP + + LGDI Sbjct: 58 TLNKQFRNIEKATNVLSFPANELNWQDLRFSGNEIASSNKPIILENLGDSDYMHLGDIAF 117 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 Y++I E+ K FENH +HL+IH LHL+G+DH +D + +ME LE IL GI+ Sbjct: 118 CYDVIYNESYEQQKTFENHFIHLLIHSILHLIGFDHQNDTETKIMENLEIEILAHFGISS 177 Query: 167 PY 168 PY Sbjct: 178 PY 179 >gi|218132189|ref|ZP_03460993.1| hypothetical protein BACPEC_00046 [Bacteroides pectinophilus ATCC 43243] gi|217992910|gb|EEC58910.1| hypothetical protein BACPEC_00046 [Bacteroides pectinophilus ATCC 43243] Length = 173 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 19/160 (11%) Query: 25 EIHLRTLCEVVFAKAVSNLISKG--YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 E +R + E+ + ++ +I++ Y VE++++ TD+ I N EYRG+D PT+ Sbjct: 8 ETDIRIVPEIPEEEIINKVITQACDYEKCPYEVEVNVLLTDNESIHETNREYRGVDAPTD 67 Query: 83 VLSFPTAFAS-----------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 VLSFP L+LGDIV++ E + +A G + Sbjct: 68 VLSFPMIDYEAPADFAFLEDSPVEDYFDPDTGELLLGDIVISVEKVMEQAEKYGHSVKRE 127 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L+ H LHL GYDH++ +A VME + IL ++GI Sbjct: 128 LAFLVAHSMLHLFGYDHMEPDEAEVMEDKQNQILLNIGIT 167 >gi|262377255|ref|ZP_06070479.1| metal-dependent hydrolase [Acinetobacter lwoffii SH145] gi|262307708|gb|EEY88847.1| metal-dependent hydrolase [Acinetobacter lwoffii SH145] Length = 160 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 8/161 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L ++++ E+ L+ K V + + ++ E+ + D+ L Sbjct: 1 MKLSLSLQQDFQSPELVLK---RAYIKKVVETTLR--HIGTQSNCEIGIACVDNDESHKL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYR DKPTNVLSFP+ + +GD+V+ ++ EA+ GK H H Sbjct: 56 NLEYRDKDKPTNVLSFPSELPDEMAQFLDAFPIGDLVICIPVVLREASEQGKAPLTHFTH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 +++HG LHL+GYDH D+DA ME +E IL LG +PY Sbjct: 116 MLVHGTLHLMGYDHETSDEDAEEMESIEIEILAKLGFENPY 156 >gi|83949575|ref|ZP_00958308.1| hypothetical protein ISM_00735 [Roseovarius nubinhibens ISM] gi|83837474|gb|EAP76770.1| hypothetical protein ISM_00735 [Roseovarius nubinhibens ISM] Length = 166 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 10/131 (7%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSL 99 + E+SL+ D RI LN E+R +PTNVLS+P+ + Sbjct: 36 LDAEDWEISLLACDDARIAGLNEEFRDKPRPTNVLSWPSEERGAETPGARPDLPEPGFDP 95 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDI +++E EA GK E+H+ HLI+H LHLLGYDH+ D+DA +ME E IL Sbjct: 96 ELGDIAISWETCAAEARAAGKPVEDHVTHLIVHAVLHLLGYDHIRDQDATLMEAEEVVIL 155 Query: 160 EDLGINDPYEV 170 +LG++DPY V Sbjct: 156 GNLGLDDPYSV 166 >gi|85057391|ref|YP_456307.1| metal-dependent hydrolase [Aster yellows witches'-broom phytoplasma AYWB] gi|123518441|sp|Q2NK15|RRMF_AYWBP RecName: Full=Probable rRNA maturation factor gi|84789496|gb|ABC65228.1| predicted metal-dependent hydrolase [Aster yellows witches'-broom phytoplasma AYWB] Length = 146 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K +L+ K + + + L+F + +I+ LN YR + PT+VLSF G Sbjct: 14 KPFKSLLIKMFLPIKEKKIMHLIFVTNEKIQELNSFYRQKNYPTDVLSFHNDLTFFAGLE 73 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 LGD+ +++ + +A E + L +HGFLHL GY H +++ +M L+ Sbjct: 74 DNSLGDVFISFPKAQEQAKTFKHSLEREIAFLAVHGFLHLKGYQHRTEEEFQIMLALQEK 133 Query: 158 ILEDLGIN 165 IL+ +G+N Sbjct: 134 ILQKVGLN 141 >gi|304403958|ref|ZP_07385620.1| protein of unknown function UPF0054 [Paenibacillus curdlanolyticus YK9] gi|304346936|gb|EFM12768.1| protein of unknown function UPF0054 [Paenibacillus curdlanolyticus YK9] Length = 165 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 19/169 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQ+ W +E + E + L G ++SL F D I L Sbjct: 1 MSLQL-----DWSNEQDKIEIPEAWITRLEQLLQIAGEQEGLTEGDVSLTFVDDEEIHRL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL--------------MLGDIVLAYEIIEIEAN 116 N ++R ID+PT+VLSF D + MLGDI+++ E ++ Sbjct: 56 NRDFRHIDRPTDVLSFAMQEDGEDEPEIVFEVESEDEPDPFSGMLGDIIISTERALAQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HGFLHL+GYDH D + M + ++L+ G+ Sbjct: 116 EYGHSLEREIGFLFVHGFLHLIGYDHEDAEGEAEMTAKQEAVLQKAGLP 164 >gi|291567588|dbj|BAI89860.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 186 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 23/182 (12%) Query: 11 LDLQIAVENALW-------------GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVEL 57 + L++ +E+ W G++ E F + + L Y EL Sbjct: 1 MQLEVNIEDNFWSGKDGESMTSGGRGEKAIASETWESWFQQWLQQLDP--YLPPAKGYEL 58 Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEII 111 SL TD I+ N +YR +D+ T+VLSF A LGDI+++ E Sbjct: 59 SLRLTDDREIQAFNAQYRQLDQATDVLSFAALETSLVMPAEHLSLHPCYLGDIIISVETA 118 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED--LGINDPYE 169 +A L L HG LHLLG+DH DD+ M ++++L+ L I Y Sbjct: 119 FRQAQQARHNLTTELAWLTSHGLLHLLGWDHPDDRSLTRMLEQQKALLQKVNLQIGSGYA 178 Query: 170 VD 171 D Sbjct: 179 WD 180 >gi|148657696|ref|YP_001277901.1| hypothetical protein RoseRS_3596 [Roseiflexus sp. RS-1] gi|172048089|sp|A5UZ98|RRMF_ROSS1 RecName: Full=Probable rRNA maturation factor gi|148569806|gb|ABQ91951.1| protein of unknown function UPF0054 [Roseiflexus sp. RS-1] Length = 160 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 15/160 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+Q+ A + D + E VE+ ++ TD ++ L Sbjct: 8 VDIQVVPPYAAYVDSALIEQAVECTLQ----------MEQVAGPVEVGILITDDAGLQRL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 N YRG+D PT+VLSF A S + LGDI +++E + +A G E L Sbjct: 58 NQAYRGVDAPTDVLSFAEADDDSAFVRPPDAPRYLGDIAISWERVVAQAAEYGHSREREL 117 Query: 127 VHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 L++HG LHLLGYDH D M E IL LG++ Sbjct: 118 AFLVVHGMLHLLGYDHERSPADEADMRAREEEILRALGLS 157 >gi|291538974|emb|CBL12085.1| conserved hypothetical protein TIGR00043 [Roseburia intestinalis XB6B4] Length = 169 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 17/151 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + E AK V++ + + E++L TD+ I +N EYR ID PT+VLSFP Sbjct: 18 SFDEEALAKEVTDY-AIEHEGFPFEAEINLTLTDNDGIHAINKEYRDIDAPTDVLSFPML 76 Query: 89 ---------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + +MLGDI+++ + ++ +A G + LI+H Sbjct: 77 SYESAGDFSKLEDNYDDNFNPDTGEIMLGDIIISVDKVKEQAKSYGHSEKREYAFLILHS 136 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHL GYDH+ ++A +MEG + IL ++ I Sbjct: 137 MLHLFGYDHMTPEEAAIMEGKQTEILNEMNI 167 >gi|164686281|ref|ZP_02210311.1| hypothetical protein CLOBAR_02719 [Clostridium bartlettii DSM 16795] gi|164601883|gb|EDQ95348.1| hypothetical protein CLOBAR_02719 [Clostridium bartlettii DSM 16795] Length = 153 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 68/145 (46%), Gaps = 3/145 (2%) Query: 24 DEIHLRTLCEVVFAKAVSNLIS-KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D + E + K ++ Y ++ E+SL F D+ I LN EYRGID+ T+ Sbjct: 7 DRQDKLEVSEELIEKIKDIILECLDYEDYDDNYEVSLSFVDNKEIHELNKEYRGIDRATD 66 Query: 83 VLSFPTAFASSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 VLSFP G LGDIV++ E ++ FE + L+ H HLLGY Sbjct: 67 VLSFPLLVEDEFGVDFGEESLGDIVISLERAFEQSREYNHSFEREVCFLVCHSMFHLLGY 126 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH +++ M E IL LGI Sbjct: 127 DHDTEENTKEMSQKEEYILNKLGIT 151 >gi|227544913|ref|ZP_03974962.1| metal-dependent hydrolase [Lactobacillus reuteri CF48-3A] gi|300910060|ref|ZP_07127520.1| probable metalloprotease [Lactobacillus reuteri SD2112] gi|227185125|gb|EEI65196.1| metal-dependent hydrolase [Lactobacillus reuteri CF48-3A] gi|300892708|gb|EFK86068.1| probable metalloprotease [Lactobacillus reuteri SD2112] Length = 160 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DL+I + L + + +K + EN E+SL F ++ I+ Sbjct: 1 MMDLEIFDQTTAQLPNEQLE------MVRDLLQYAAKELSLSEN-TEMSLTFVNNPEIKK 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLG 119 LN +YR +D+ T+VLSF A + + LGD+ ++ + + +A LG Sbjct: 54 LNAQYRNVDRATDVLSFAAEEAGDETPIIMDPQMAAEIPVNLGDLFISIDKVAEQAKFLG 113 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L +HGFLHL GYDH + D M L+R IL+ G+ Sbjct: 114 HSVDRELGFLAVHGFLHLNGYDHEEPADEEKMFKLQREILDGYGLT 159 >gi|271963824|ref|YP_003338020.1| hypothetical protein Sros_2296 [Streptosporangium roseum DSM 43021] gi|270506999|gb|ACZ85277.1| protein of unknown function UPF0054 [Streptosporangium roseum DSM 43021] Length = 160 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 21/163 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE + +L V + N + ELS++ D + L Sbjct: 1 MSIEVNNESGVEVDEGLIVSLAGHVLERMDIN----------PLAELSILIVDEEAMAVL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----------ASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 + ++ G PT+VLSFP +LGD+VL ++ +A G Sbjct: 51 HEQWMGEPGPTDVLSFPMDELRPGPGSGARQEGDAPTDPALLGDVVLCPQVAAKQAAEAG 110 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E L L HG LHLLGYDH + ++ M GL+ +LE Sbjct: 111 HSTEAELELLCTHGILHLLGYDHAEPEEHKEMFGLQGELLESW 153 >gi|158421634|ref|YP_001522926.1| hypothetical protein AZC_0010 [Azorhizobium caulinodans ORS 571] gi|172048013|sp|A8IG05|RRMF_AZOC5 RecName: Full=Probable rRNA maturation factor gi|158328523|dbj|BAF86008.1| protein of unknown function [Azorhizobium caulinodans ORS 571] Length = 159 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ + VE+ W + A+++L + E+S+ TD RI L Sbjct: 1 MEIDVLVEDDGWSALPDAAEIAIAAARAALASLGDEV----PEGAEMSITLTDDARIRVL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+R DKPTNVLSFP A +G LGD+++A E + EA K +HL HL+ Sbjct: 57 NREWRDKDKPTNVLSFPAAEL-PEGVVPQPLGDVIVARETVFSEALAEDKTPAHHLAHLV 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HG LHL+G+DH DD +A ME ER IL LGI+DPY + Sbjct: 116 VHGTLHLMGFDHEDDDEAEEMEAAERQILAGLGIDDPYAL 155 >gi|296157339|ref|ZP_06840175.1| protein of unknown function UPF0054 [Burkholderia sp. Ch1-1] gi|295892675|gb|EFG72457.1| protein of unknown function UPF0054 [Burkholderia sp. Ch1-1] Length = 153 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 78/163 (47%), Gaps = 14/163 (8%) Query: 8 LPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 P+L L + A W + L V+ I F EL++ F D+ Sbjct: 4 TPKLTLNLQFPAAKAWPEHKALLP------RATVAGWIKAALFAD---GELTVRFVDAEE 54 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 55 GRTLNRTYRGKDYSTNVLTFAYAESEDDPVT----GDLILCCPVVEKEAAEQGKPLLAHY 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME +E IL LG DPY+ Sbjct: 111 AHLLVHGTLHAQGYDHEAEEEAEEMEAIETEILGKLGFPDPYQ 153 >gi|255280944|ref|ZP_05345499.1| putative metalloprotease [Bryantella formatexigens DSM 14469] gi|255268392|gb|EET61597.1| putative metalloprotease [Bryantella formatexigens DSM 14469] Length = 167 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 18/156 (11%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 L E + K V ++ Y E+S+ TD I T+N E RGID T+VLS Sbjct: 11 ADLPFDWEDIAVKVVEAVLD--YTDCPYEAEVSVTLTDDAEIRTINREQRGIDAATDVLS 68 Query: 86 FPT---------AFASSDGCS-------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 FP F + LMLGDIV++ + + +A G L Sbjct: 69 FPMVSYEIPGNFDFLEEEPADCFHPDSGELMLGDIVISVDHVYAQAEQYGHSLLREYAFL 128 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + H HL+GYDH+ +++A ME + +LE L I Sbjct: 129 LAHSMFHLIGYDHMTEQEAAEMERKQEEVLERLNIT 164 >gi|315651385|ref|ZP_07904410.1| metal-dependent hydrolase [Eubacterium saburreum DSM 3986] gi|315486344|gb|EFU76701.1| metal-dependent hydrolase [Eubacterium saburreum DSM 3986] Length = 168 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 22/170 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I+ E+ E L E + K V+ + + E+S+ D I + Sbjct: 5 MTVEISYES-----EKSLDIPYEDIINKMVAASLD--FENCPYEAEVSVTIVDDEEIRKI 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG---------------CSSLMLGDIVLAYEIIEIEA 115 N EYRGIDK T+VLSFP S G L+LGDI+L+ E I +A Sbjct: 58 NSEYRGIDKSTDVLSFPFNEFESPGNFDDIEESVDAFNPESGELLLGDIILSTEHIIEQA 117 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L++H LHL+GYDH+ D+D +ME +R IL+ GI+ Sbjct: 118 REYGHSETRELAFLVVHSMLHLMGYDHIADEDRVIMEDRQRKILDLEGIS 167 >gi|325686033|gb|EGD28091.1| metalloprotease [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 174 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ T + + + L+ +K K+N E+S+ F D R + +N +YR Sbjct: 5 DVSYSDEVGFLTKGDRDWEGWIMQLLLMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +IE + G F+ Sbjct: 65 KDRPTDVISFAIEDGDDGLDLAMFTQDPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HG+LHL YDH++ +A M G++ +LE+ G+ Sbjct: 125 YTIVHGYLHLNCYDHIEPDEAKEMFGIQGKVLEEYGLP 162 >gi|51891669|ref|YP_074360.1| hypothetical protein STH531 [Symbiobacterium thermophilum IAM 14863] gi|59799024|sp|Q67S27|RRMF_SYMTH RecName: Full=Probable rRNA maturation factor gi|51855358|dbj|BAD39516.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 156 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 4/137 (2%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E + + + + V +S+ D I LN ++RG+ PT+VLSF Sbjct: 19 EELIRRVAERALELAGAGLGSNVSVSVTLVDDETITDLNRDHRGLASPTDVLSFSQLEGE 78 Query: 93 S----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + LGDIV++ E +A G FE L L HG LHL+G+DH +D Sbjct: 79 DMGDLPEGEPMPLGDIVISLERCVSQAAEYGHSFERELGFLTAHGMLHLMGWDHQTPEDE 138 Query: 149 CVMEGLERSILEDLGIN 165 M IL LG++ Sbjct: 139 ARMMAKTEEILAGLGLS 155 >gi|118602172|ref|YP_903387.1| hypothetical protein Rmag_0121 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|145572752|sp|A1AVF9|RRMF_RUTMC RecName: Full=Probable rRNA maturation factor gi|118567111|gb|ABL01916.1| protein of unknown function UPF0054 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 145 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 5/143 (3%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 IH ++ E + + +I + + EL + + I+ LN YR DK TNVLS Sbjct: 8 IHDSSINEYDLSNTLQEVIKE---LDRGESELLIRLVNETEIKNLNKVYRHQDKLTNVLS 64 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + +LGD+V+ +++ E+ K F NHL H+ IHG LHLLGYDH+D Sbjct: 65 FQSDL--PIEIDEAVLGDVVICTQVVLKESIEQHKSFNNHLTHMAIHGMLHLLGYDHIDT 122 Query: 146 KDACVMEGLERSILEDLGINDPY 168 KDA ME LE IL +GIN+PY Sbjct: 123 KDAQQMENLEIKILAKIGINNPY 145 >gi|284050359|ref|ZP_06380569.1| putative metalloprotease [Arthrospira platensis str. Paraca] Length = 186 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 23/182 (12%) Query: 11 LDLQIAVENALW-------------GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVEL 57 + L++ +E+ W G++ E F + + L Y EL Sbjct: 1 MQLEVNIEDNFWSGKDGESMTYGGRGEKAIASETWESWFQQWLQQLDP--YLPPAKGYEL 58 Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEII 111 SL TD I+ N +YR +D+ T+VLSF A LGDI+++ E Sbjct: 59 SLRLTDDREIQAFNAQYRQLDQATDVLSFAALETSLVMPAEHLSLHPCYLGDIIISVETA 118 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED--LGINDPYE 169 +A L L HG LHLLG+DH DD+ M ++++L+ L I Y Sbjct: 119 FRQAQQARHNLTTELAWLTSHGLLHLLGWDHPDDRSLTRMLEQQKALLQKVNLQIGSGYA 178 Query: 170 VD 171 D Sbjct: 179 WD 180 >gi|114766587|ref|ZP_01445543.1| hypothetical protein 1100011001317_R2601_08751 [Pelagibaca bermudensis HTCC2601] gi|114541203|gb|EAU44255.1| hypothetical protein R2601_08751 [Roseovarius sp. HTCC2601] Length = 160 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 51/126 (40%), Positives = 71/126 (56%), Gaps = 7/126 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-------SDGCSSLMLG 102 + E++++ D RI LN ++R KPTNVLS+P+ + LG Sbjct: 34 LDPERFEIAVLACDDARIAELNGDFRAKPKPTNVLSWPSEERDPEEPPEGGEDGMPEELG 93 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI +A+E EA GK ++H+ HL++H LHLLGYDH+ D +A VME LE IL + Sbjct: 94 DIAIAWETCAREAAEQGKPLDHHITHLMVHATLHLLGYDHISDAEATVMETLETEILGKM 153 Query: 163 GINDPY 168 GI DPY Sbjct: 154 GIEDPY 159 >gi|332707781|ref|ZP_08427808.1| conserved hypothetical protein TIGR00043 [Lyngbya majuscula 3L] gi|332353484|gb|EGJ32997.1| conserved hypothetical protein TIGR00043 [Lyngbya majuscula 3L] Length = 175 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 9/142 (6%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + L + + N ELSL TD+ I+ LN +YR ++PT+VL+F Sbjct: 34 WESWFDQWLVAL--EPDLPEANSYELSLRLTDNSEIQALNSQYRKKNQPTDVLAFAALEV 91 Query: 92 SSDGCSS-------LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +S S L LGDIV++ + +A G L L HG LHLLG+DH D Sbjct: 92 NSPKLSPQKQLSVPLYLGDIVISVDTAVQQAKQHGHSVSTELAWLATHGLLHLLGWDHPD 151 Query: 145 DKDACVMEGLERSILEDLGIND 166 ++ M + ++L+ +G+++ Sbjct: 152 EESLLRMLDQQETLLQSVGLSN 173 >gi|108800421|ref|YP_640618.1| putative metalloprotease [Mycobacterium sp. MCS] gi|119869550|ref|YP_939502.1| putative metalloprotease [Mycobacterium sp. KMS] gi|126436044|ref|YP_001071735.1| putative metalloprotease [Mycobacterium sp. JLS] gi|122976747|sp|Q1B6C2|RRMF_MYCSS RecName: Full=Probable rRNA maturation factor gi|145558813|sp|A1UIQ4|RRMF_MYCSK RecName: Full=Probable rRNA maturation factor gi|166232596|sp|A3Q267|RRMF_MYCSJ RecName: Full=Probable rRNA maturation factor gi|108770840|gb|ABG09562.1| protein of unknown function UPF0054 [Mycobacterium sp. MCS] gi|119695639|gb|ABL92712.1| protein of unknown function UPF0054 [Mycobacterium sp. KMS] gi|126235844|gb|ABN99244.1| protein of unknown function UPF0054 [Mycobacterium sp. JLS] Length = 177 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V K N ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSEEELISVARFVIEKMNVN----------PAAELSMVLLDTSSMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAKQAETAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M L+R +LE+ Sbjct: 111 ELALLTVHGVLHLLGYDHAEPDEEKEMFALQRELLEEW 148 >gi|315038513|ref|YP_004032081.1| Metalloprotease [Lactobacillus amylovorus GRL 1112] gi|312276646|gb|ADQ59286.1| Metalloprotease [Lactobacillus amylovorus GRL 1112] Length = 174 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + L+ +K K+N +E+S+ F D +N +YR Sbjct: 5 DITYNDEVGFLDDKRRDWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDCSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDSIDLAAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LED G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEDYGLP 162 >gi|303256204|ref|ZP_07342220.1| putative metalloprotease [Burkholderiales bacterium 1_1_47] gi|302860933|gb|EFL84008.1| putative metalloprotease [Burkholderiales bacterium 1_1_47] Length = 156 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 9/142 (6%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +L ++ + IS+ EN ++++ F + LN YR D TNVL+F Sbjct: 13 NLAHFPQLPSRGKIQRWISRAL---ENDAQITVRFVEEEEGRELNKTYRSKDYATNVLTF 69 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 ++ D+V+ ++E E+ K E H+ HL++HG LH GYDH+DD+ Sbjct: 70 DYQ------IEPVVEADLVICVPVLEKESKDQNKTLEEHMAHLLVHGTLHAQGYDHMDDE 123 Query: 147 DACVMEGLERSILEDLGINDPY 168 +A VME E +L DLG + PY Sbjct: 124 EAEVMEQRETDVLVDLGFDVPY 145 >gi|39939110|ref|NP_950876.1| hypothetical protein PAM_624 [Onion yellows phytoplasma OY-M] gi|59799050|sp|Q6YPV1|RRMF_ONYPE RecName: Full=Probable rRNA maturation factor gi|39722219|dbj|BAD04709.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 146 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 67/126 (53%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 +L+ K + + + L+F + +I+ LN YR + PT+VLSFP G Sbjct: 16 FKSLLIKMFLPIKEKKLMHLIFVTNEKIQELNSFYRQKNYPTDVLSFPNDLTFFAGLEDN 75 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGD+ +++ +++A E + L +HGFLHL GY H +++ +M L+ IL Sbjct: 76 SLGDVFISFSKAQVQAQTAKHSLEREIAFLAVHGFLHLKGYQHRTEEEFQIMLALQEKIL 135 Query: 160 EDLGIN 165 +++G+N Sbjct: 136 QNVGLN 141 >gi|317471788|ref|ZP_07931126.1| hypothetical protein HMPREF1011_01475 [Anaerostipes sp. 3_2_56FAA] gi|316900714|gb|EFV22690.1| hypothetical protein HMPREF1011_01475 [Anaerostipes sp. 3_2_56FAA] Length = 165 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 17/144 (11%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 CE++ + V + Y E++L+ + I +N E RGID+PT+VLSFP Sbjct: 17 CEMIAGQVVEAAVD--YVTCPFECEVNLMLVGNEEIHRINLEQRGIDRPTDVLSFPMIEY 74 Query: 92 SSDGC---------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 + GC LMLGDIV++ + + +A G E LI H LH Sbjct: 75 ENPGCFDGLEEDPAAFHPDTGELMLGDIVISLDKAKEQAKAYGHSLEREYAFLIAHSMLH 134 Query: 137 LLGYDHVDDKDACVMEGLERSILE 160 L GYDH++D++ VME + IL+ Sbjct: 135 LFGYDHMEDEERAVMEEKQEEILQ 158 >gi|148251672|ref|YP_001236257.1| hypothetical protein BBta_0048 [Bradyrhizobium sp. BTAi1] gi|172047308|sp|A5E857|RRMF_BRASB RecName: Full=Probable rRNA maturation factor gi|146403845|gb|ABQ32351.1| hypothetical protein BBta_0048 [Bradyrhizobium sp. BTAi1] Length = 169 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 86/160 (53%), Gaps = 8/160 (5%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ + W D+ + A + ++ E++++ TD I TLN Sbjct: 10 EVIIAADCWQDQPDAEDVIHRAILAAAERVDAEV-----GDAEIAVMLTDDAGIRTLNSN 64 Query: 74 YRGIDKPTNVLSFPT---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +RGIDKPTNVLSFP D + MLGDI +AYE + EA+ K F++HL HL Sbjct: 65 WRGIDKPTNVLSFPALQPTGPRGDDDAPRMLGDIAIAYETMRREADEEQKPFDHHLSHLT 124 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +HGFLHL+GYDH D +A ME LE IL LG+ DPY Sbjct: 125 VHGFLHLIGYDHESDAEAEEMEALETEILAHLGVPDPYAD 164 >gi|26007037|sp|O05960|RRMF_RICPR RecName: Full=Probable rRNA maturation factor gi|292572382|gb|ADE30297.1| Putative metal-dependent hydrolase [Rickettsia prowazekii Rp22] Length = 167 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 14/170 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + R + + + K N++ + F K ELS++ T++ I Sbjct: 1 MINVEIIRNYNKWREH---RKINKGLIKKITQNVLVRFDNFSKIKQFELSILLTNTAEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGC----------SSLMLGDIVLAYEIIEIEANVL 118 TLN ++R I+K TNVLSFP + + LGDI YE+I E+ Sbjct: 58 TLNQQFRSIEKATNVLSFPNNELNWHNLYSKLEFLYYSDYMHLGDIAFCYEVIYNESCEQ 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +H++IH LHL+G+DH +D DA +ME LE IL GI PY Sbjct: 118 QKTFENHFIHMLIHSILHLIGFDHQNDTDANIMESLEIEILSYFGIPSPY 167 >gi|239947061|ref|ZP_04698814.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921337|gb|EER21361.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 167 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 11/151 (7%) Query: 29 RTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 + + + K N++ + F K +ELS++ T++ I TLN ++R I+K TNVLSFP Sbjct: 17 EQINKSLIKKITQNVLLRFDNFSKIKQLELSILLTNTVEILTLNKQFRNIEKATNVLSFP 76 Query: 88 TAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 + + LGDI YE+I E+ K FENH +HL+IH LHL Sbjct: 77 SNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQQKTFENHFIHLLIHSVLHL 136 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +G+DH +D +A +ME LE IL GI+ PY Sbjct: 137 IGFDHQNDTEANIMENLEIEILSYFGISSPY 167 >gi|253576079|ref|ZP_04853411.1| cytidine deaminase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844422|gb|EES72438.1| cytidine deaminase [Paenibacillus sp. oral taxon 786 str. D14] Length = 165 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L L + E L L E V A G E++L F D I L Sbjct: 3 LQLAWSNEQDKMEIGQDLIDLLERVLQIA-------GQAEGITEGEVALTFVDDEAIHEL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS--------------SLMLGDIVLAYEIIEIEAN 116 N +YRGID+PT+VLSF + + + MLGDI+++ E + ++ Sbjct: 56 NRDYRGIDRPTDVLSFAMNESLEEEPEIVYELEEDEELDDMTEMLGDIIISVERAKAQSE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G E + L +HGFLHLLGYDH D M G + + L ++G+ Sbjct: 116 EYGHSLEREIGFLFVHGFLHLLGYDHQDAVSEAEMMGKQEAALAEVGL 163 >gi|170693392|ref|ZP_02884551.1| protein of unknown function UPF0054 [Burkholderia graminis C4D1M] gi|170141547|gb|EDT09716.1| protein of unknown function UPF0054 [Burkholderia graminis C4D1M] Length = 153 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 P+L L N + V+ V+ I F EL++ F D+ Sbjct: 4 APKLTL-----NLQFPAAKAWPEHKAVLPRATVAGWIKAALFAD---GELTVRFVDAEEG 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 56 RTLNRTYRGKDYSTNVLTFAYAESEDDPVT----GDLILCCPVVEKEAAEQGKPLVAHYA 111 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME LE IL LG DPY Sbjct: 112 HLLVHGTLHAQGYDHEVEEEAEEMEALETEILGKLGFPDPYR 153 >gi|282861808|ref|ZP_06270872.1| protein of unknown function UPF0054 [Streptomyces sp. ACTE] gi|282563624|gb|EFB69162.1| protein of unknown function UPF0054 [Streptomyces sp. ACTE] Length = 165 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAVLDIARYALARMRIHPLS----------ELSVIVVDAAAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKRQGEEAPTGHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRGERGLTGP 158 >gi|257413987|ref|ZP_04744887.2| putative metalloprotease [Roseburia intestinalis L1-82] gi|257201590|gb|EEU99874.1| putative metalloprotease [Roseburia intestinalis L1-82] Length = 169 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 17/151 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + E AK V++ + + E++L TD+ I +N EYR ID PT+VLSFP Sbjct: 18 SFDEEALAKEVTDY-AIEHEGFPFEAEINLTLTDNDGIHAINKEYRDIDAPTDVLSFPML 76 Query: 89 ---------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + +MLGDI+++ + ++ +A G + LI+H Sbjct: 77 SYESAGDFSKLEDDYDDNFNPDTGEIMLGDIIISVDKVKEQAKSYGHSEKREYAFLILHS 136 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHL GYDH+ ++A +MEG + IL ++ I Sbjct: 137 MLHLFGYDHMTPEEAAIMEGKQTEILNEMNI 167 >gi|89899547|ref|YP_522018.1| hypothetical protein Rfer_0737 [Rhodoferax ferrireducens T118] gi|122479948|sp|Q220R6|RRMF_RHOFD RecName: Full=Probable rRNA maturation factor gi|89344284|gb|ABD68487.1| protein of unknown function UPF0054 [Rhodoferax ferrireducens T118] Length = 148 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 6/117 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 ++ E+++ D+ + LN +YR D TNVL+F ++ D+VL ++ Sbjct: 38 QSDAEITVRIVDTEEGQALNRDYRHKDYATNVLTFDYT------QEPVVTADLVLCAPVV 91 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA GK + H HL++HG LH G+DH ++DA VME E I+ LG +PY Sbjct: 92 AQEAKEQGKTLQEHYAHLLVHGALHAQGWDHEAEEDAQVMELRESEIMARLGFENPY 148 >gi|34581258|ref|ZP_00142738.1| hypothetical protein [Rickettsia sibirica 246] gi|28262643|gb|EAA26147.1| unknown [Rickettsia sibirica 246] Length = 167 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 14/170 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + + + + + K N++ + F K ELS++ T++ I Sbjct: 1 MINVEIVRNYNKWREH---KQINKSLIKKITQNILLRFDNFSKIKQFELSILLTNAAEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 TLN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 58 TLNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQ 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 118 HKTFENHFIHLLIHSILHLIGFDHQNDTEANIMEDLEIEILSYFGIFPPY 167 >gi|145590039|ref|YP_001156636.1| hypothetical protein Pnuc_1860 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189039044|sp|A4T008|RRMF_POLSQ RecName: Full=Probable rRNA maturation factor gi|145048445|gb|ABP35072.1| protein of unknown function UPF0054 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 155 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 13/155 (8%) Query: 15 IAVENALWGDEIHLRTLCE-VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I ++ A E L+ + + K + L+L F +S + LN Sbjct: 9 IDIQTASPAIEAALKKIASSALIKKWIKAATPLSGL-------LTLRFVNSTEGKKLNAA 61 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +R TNVL+FP + S + DI+ +I EA GK + HL HLI+HG Sbjct: 62 FRKKHYATNVLTFPYEHSKSALSA-----DIIFCLPVIRKEAKEQGKTVKAHLAHLIVHG 116 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LH G+DH +K+ ME LE ++L+ LG DPY Sbjct: 117 CLHAQGFDHEHEKETKKMEKLEVALLKKLGFTDPY 151 >gi|227364880|ref|ZP_03848926.1| metal-dependent hydrolase [Lactobacillus reuteri MM2-3] gi|325682495|ref|ZP_08162012.1| putative metalloprotease [Lactobacillus reuteri MM4-1A] gi|227070084|gb|EEI08461.1| metal-dependent hydrolase [Lactobacillus reuteri MM2-3] gi|324978334|gb|EGC15284.1| putative metalloprotease [Lactobacillus reuteri MM4-1A] Length = 160 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DL+I + L + + +K + EN E+SL F ++ I+ Sbjct: 1 MMDLEIFDQTTAQLPNEQLE------MVRDLLQYAAKELSLSEN-TEMSLTFVNNPEIKK 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLG 119 LN +YR +D+ T+VLSF A + + LGD+ ++ + + +A LG Sbjct: 54 LNAQYRNVDRATDVLSFAAEEAGDETPIIMDPEMAAEIPVNLGDLFISIDKVAEQAKFLG 113 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L +HGFLHL GYDH + D M L+R IL+ G+ Sbjct: 114 HSVDRELGFLAVHGFLHLNGYDHEEPADEEKMFKLQREILDGYGLT 159 >gi|297559685|ref|YP_003678659.1| hypothetical protein Ndas_0708 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844133|gb|ADH66153.1| protein of unknown function UPF0054 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 162 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%) Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + +A E+ + DE L L V + + ELS+V D + Sbjct: 1 MSIDVANESGVTTVDEERLSRLARHVLDAMRVH----------PLAELSVVLVDEEPMAD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGC----SSLMLGDIVLAYEIIEIEANVLGKEFENH 125 L+ + PT+VLSFP G +LGD+++ ++ E +A G E Sbjct: 51 LHVRWMDEPGPTDVLSFPMDELRPGGPGRTSEPGVLGDVIICPQVAERQAEKAGHGTEAE 110 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH + ++ M GL+ IL Sbjct: 111 IDLLCTHGILHLLGYDHAEPEEHKEMFGLQGEILAAW 147 >gi|148543967|ref|YP_001271337.1| hypothetical protein Lreu_0736 [Lactobacillus reuteri DSM 20016] gi|184153362|ref|YP_001841703.1| hypothetical protein LAR_0707 [Lactobacillus reuteri JCM 1112] gi|194467790|ref|ZP_03073776.1| protein of unknown function UPF0054 [Lactobacillus reuteri 100-23] gi|167016785|sp|A5VJH6|RRMF_LACRD RecName: Full=Probable rRNA maturation factor gi|229890246|sp|B2G6Z1|RRMF_LACRJ RecName: Full=Probable rRNA maturation factor gi|148531001|gb|ABQ83000.1| protein of unknown function UPF0054 [Lactobacillus reuteri DSM 20016] gi|183224706|dbj|BAG25223.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|194452643|gb|EDX41541.1| protein of unknown function UPF0054 [Lactobacillus reuteri 100-23] Length = 159 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 17/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + L + + +K + EN E+SL F ++ I+ L Sbjct: 1 MDLEIFDQTTAQLPNEQLE------MVRDLLQYAAKELSLSEN-TEMSLTFVNNPEIKKL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLGK 120 N +YR +D+ T+VLSF A + + LGD+ ++ + + +A LG Sbjct: 54 NAQYRNVDRATDVLSFAAEEAGDETPIIMDPEMAAEIPVNLGDLFISIDKVAEQAKFLGH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L +HGFLHL GYDH + D M L+R IL+ G+ Sbjct: 114 SVDRELGFLAVHGFLHLNGYDHEEPADEEKMFKLQREILDGYGLT 158 >gi|238916903|ref|YP_002930420.1| hypothetical protein EUBELI_00972 [Eubacterium eligens ATCC 27750] gi|259710181|sp|C4Z060|RRMF_EUBE2 RecName: Full=Probable rRNA maturation factor gi|238872263|gb|ACR71973.1| Hypothetical protein EUBELI_00972 [Eubacterium eligens ATCC 27750] Length = 169 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 22/163 (13%) Query: 25 EIHLRTLCEVVFAKAVSNLISKG--YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 E ++ + K +++++++ Y E+++ DS I +N EYR ID PT+ Sbjct: 6 EYEAEEKLDLDYEKIITDVVNEAVDYEKCPYEAEVNVTIVDSESIHEINKEYRNIDSPTD 65 Query: 83 VLSFP--------------------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 VLSFP + L+LGDIVL + I+ +A+ G Sbjct: 66 VLSFPGVNYVTPSDFDAIEDELENNAEDYFNPDTGELLLGDIVLCVQKIKEQADKYGHSE 125 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L H +HL GYDH+ +++ VME + +LE LGI Sbjct: 126 KRELAFLTAHSMMHLFGYDHMTPEESAVMEAKQNEVLERLGIT 168 >gi|222109709|ref|YP_002551973.1| hypothetical protein Dtpsy_0491 [Acidovorax ebreus TPSY] gi|254803969|sp|B9MCH3|RRMF_ACIET RecName: Full=Probable rRNA maturation factor gi|221729153|gb|ACM31973.1| protein of unknown function UPF0054 [Acidovorax ebreus TPSY] Length = 152 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M++ +++ L LQ A + H TL A+ + + ++ E+++ Sbjct: 1 MALNQLS---LSLQFARDAEAT---AHRATLPRHAVARWIRHALAV-------DAEITVR 47 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 + + LN E+R D TNVL+F + + D+VL ++E EA K Sbjct: 48 IVGAEEGQRLNREFRHKDYATNVLTFDYQQ------EPVAVADLVLCAPVVEREAREQNK 101 Query: 121 EFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYEV 170 E H HL++HG LH G+DH ++DA ME E +IL++LG DPY Sbjct: 102 TLEEHYAHLLVHGTLHAQGWDHETSEQDAQEMEVYETAILQELGFADPYAA 152 >gi|257865831|ref|ZP_05645484.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257872166|ref|ZP_05651819.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257875459|ref|ZP_05655112.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257799765|gb|EEV28817.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257806330|gb|EEV35152.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257809625|gb|EEV38445.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 158 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 10/131 (7%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------- 97 + G+ E+S+ F D+ I+ +N EYRG D PT+V+SF + + S Sbjct: 27 AAGHLELPEDTEMSVTFMDNAAIQEINREYRGKDMPTDVISFAFEEETDEELSIIFDEAL 86 Query: 98 ---SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E + +A G ++ L L +HGFLH+ GYDH+ +D M GL Sbjct: 87 EELPRDLGDIMISIERAKEQAAEYGHTYDRELGFLALHGFLHINGYDHMTPEDEKEMFGL 146 Query: 155 ERSILEDLGIN 165 ++ IL+ G+ Sbjct: 147 QKEILDAYGLK 157 >gi|254303748|ref|ZP_04971106.1| possible metal dependent hydrolase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323940|gb|EDK89190.1| possible metal dependent hydrolase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 162 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + ++ + + LSL+ T++ I+ +N EYR D PT+V+SF Sbjct: 33 IKKVLELEKVESDRPLYLSLLLTNNENIQVINREYRDKDAPTDVISFAYHETEDFNIGPY 92 Query: 100 M-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDI+++ E +E +A+ FE +++ HG LH+LGYDH+++ D +M E +I Sbjct: 93 DTLGDIIISLERVEEQASEYNHSFEREFYYVLTHGILHILGYDHIEEDDKKLMREREEAI 152 Query: 159 LEDLGIN 165 L G Sbjct: 153 LSSFGYT 159 >gi|239931373|ref|ZP_04688326.1| putative metalloprotease [Streptomyces ghanaensis ATCC 14672] gi|291439743|ref|ZP_06579133.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291342638|gb|EFE69594.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 165 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDERAILDIARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAARQGKEAPTQHTMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRAEKGLTGP 158 >gi|163734561|ref|ZP_02142000.1| hypothetical protein RLO149_14078 [Roseobacter litoralis Och 149] gi|161392054|gb|EDQ16384.1| hypothetical protein RLO149_14078 [Roseobacter litoralis Och 149] Length = 166 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 18/172 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+ + +E+ W + L L S + E+S + D RI L Sbjct: 1 MDIDVLIEDDRW-SALDLDVLVLEALRA-----TSVTLNLDLEAAEVSYLACDDARITLL 54 Query: 71 NFEYRGIDKPTNVLSFPT------------AFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N ++R TNVLS+P A ++D L LGD+ +AYE EA L Sbjct: 55 NADFREKTTATNVLSWPAVDLAPVIAGAVPAPPTADLTGVLALGDVAIAYETCLREATDL 114 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 K +H+ HLI+HG LHLLGYDH+ D DA +M+G+E IL +G++DPY V Sbjct: 115 RKPLADHVTHLIVHGTLHLLGYDHIRDPDATLMQGVEAKILGKMGLDDPYMV 166 >gi|104774146|ref|YP_619126.1| hypothetical protein Ldb1253 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122397141|sp|Q1G9W4|RRMF_LACDA RecName: Full=Probable rRNA maturation factor gi|103423227|emb|CAI98055.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125926|gb|ADY85256.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 174 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ T + + + L+ +K K+N E+S+ F D R + +N +YR Sbjct: 5 DVSYSDEVGFLTKGDRDWEDWIMQLLLMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +IE + G F+ Sbjct: 65 KDRPTDVISFAIEDGDDGLDLSMFTQDPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HG+LHL YDH++ +A M G++ +LE+ G+ Sbjct: 125 YTIVHGYLHLNCYDHIEPDEAKEMFGIQGKVLEEYGLP 162 >gi|160939164|ref|ZP_02086515.1| hypothetical protein CLOBOL_04058 [Clostridium bolteae ATCC BAA-613] gi|158438127|gb|EDP15887.1| hypothetical protein CLOBOL_04058 [Clostridium bolteae ATCC BAA-613] Length = 165 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 18/159 (11%) Query: 25 EIHLRTLCEVVFAKAVSN--LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 E + ++ + + + + L + Y E++++ TD+ I+ +N E+R ID PT+ Sbjct: 6 EYEAEKVLDLPYREIIEDTVLAALDYEGCPYEAEVNVILTDNDAIQEINREHRQIDAPTD 65 Query: 83 VLSFPTAFAS----------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 VLSFP + LMLGDIV++ + +E +A G L Sbjct: 66 VLSFPMVDYESPSDFDHVEEAVEDYFNPETGELMLGDIVISVDKVEEQAEKYGHSQTREL 125 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L H LHL GYDH++D + VME ++ ILE G Sbjct: 126 AFLTAHSMLHLFGYDHMEDGERLVMEEKQKEILETRGYT 164 >gi|329572232|gb|EGG53892.1| translation metalloprotein YbeY [Enterococcus faecalis TX1467] Length = 159 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 23/168 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIE 68 +D+ E E K + NL+ + G+ E+S+ FTD+ I+ Sbjct: 1 MDITFIDETEKVPTEE----------IKEIENLLQFAAGFLEIAEDTEMSVTFTDNAGIQ 50 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANV 117 +N +YRG D PT+V+SF D LGD++++ E +A Sbjct: 51 VINRDYRGKDMPTDVISFALEDEGEDELPIIFDDEELAELPRNLGDLIISTERAAEQAFE 110 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E + L +HGF HL GYDH++ +D M GL++ IL+ G+ Sbjct: 111 YGHTLEREMGFLAVHGFFHLNGYDHMEPEDEKAMFGLQKEILDAYGLK 158 >gi|116514236|ref|YP_813142.1| metal-dependent hydrolase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|313123896|ref|YP_004034155.1| metalloprotease [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|122275032|sp|Q04A18|RRMF_LACDB RecName: Full=Probable rRNA maturation factor gi|116093551|gb|ABJ58704.1| Predicted metal-dependent hydrolase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|312280459|gb|ADQ61178.1| Putative metalloprotease [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 174 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ T + + + L+ +K K+N E+S+ F D R + +N +YR Sbjct: 5 DVSYSDEVGFLTKGDRDWEDWIMQLLLMAKKEIGKDNAQEMSINFVDEDRSQAINRDYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D + +GD+ + +IE + G F+ Sbjct: 65 KDRPTDVISFAIEDGDDGLDLAMFTQDPDFTEDIGDLFMCPSVIERHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + I+HG+LHL YDH++ +A M G++ +LE+ G+ Sbjct: 125 YTIVHGYLHLNCYDHIEPDEAKEMFGIQGKVLEEYGLP 162 >gi|294782140|ref|ZP_06747466.1| metalloprotease [Fusobacterium sp. 1_1_41FAA] gi|294480781|gb|EFG28556.1| metalloprotease [Fusobacterium sp. 1_1_41FAA] Length = 162 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 8/161 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVE----LSLVFTDSH 65 L L + E + L E + + N I K ++E E LS++ TD+ Sbjct: 2 ELVLDFSYELDNEKYNEFIDKLYEDAY---LENYIKKVLEIEEVEAERPLYLSVLLTDNK 58 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFEN 124 I+ +N EYR D PT+V+SF LGDI+++ E +E +++ FE Sbjct: 59 NIQVINREYRDKDAPTDVISFAYHETDDFNIGPYDTLGDIIISLERVEEQSSEYNHSFER 118 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +++ HG LH+LGYDH++++D VM E +IL G Sbjct: 119 EFYYVLTHGILHILGYDHIEEEDKKVMREREEAILSSFGYT 159 >gi|266623022|ref|ZP_06115957.1| putative metalloprotease [Clostridium hathewayi DSM 13479] gi|288865224|gb|EFC97522.1| putative metalloprotease [Clostridium hathewayi DSM 13479] Length = 165 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 18/161 (11%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + E L+ E + V+ + Y E++++ TD+ I +N EYR ID Sbjct: 6 EYETEEELKLPYEEIITTVVNEALD--YENCPYEAEVNVLLTDNEDIRQINKEYRDIDNA 63 Query: 81 TNVLSFPTAFAS----------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 T+VLSFP A + L+LGDIV++ + ++ +A G Sbjct: 64 TDVLSFPMADYDSPSDFDRLEDMASDYFNPETGELLLGDIVISVDKVKEQAEKYGHSETR 123 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L L+ H LHL GYDH+ D++ VME + IL+ G Sbjct: 124 ELAFLVAHSMLHLCGYDHMVDEERLVMEKKQEEILKRGGYE 164 >gi|256832769|ref|YP_003161496.1| hypothetical protein Jden_1545 [Jonesia denitrificans DSM 20603] gi|256686300|gb|ACV09193.1| protein of unknown function UPF0054 [Jonesia denitrificans DSM 20603] Length = 151 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E DE L VF + ELS+VF D I L Sbjct: 1 MSIEVNNETTHQLDEAEFAELARYVFDAM----------HIHPLTELSVVFVDPDTISEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ I PT+VLSFP + +LGDIV+ E+ +A G + Sbjct: 51 HEQWMDIPGPTDVLSFPMDELRPGTTERPTEQGILGDIVICPEVAVDQAAQAGHSPIEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH + ++ M L+R +L Sbjct: 111 LLLATHGILHLLGYDHAEPEEEREMFSLQRHLL 143 >gi|329934652|ref|ZP_08284693.1| metal-dependent hydrolase [Streptomyces griseoaurantiacus M045] gi|329305474|gb|EGG49330.1| metal-dependent hydrolase [Streptomyces griseoaurantiacus M045] Length = 165 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 17/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARHALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVL--GKEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ + + Sbjct: 51 HRQWMDLPGPTDVMSFPMDELRPPGKDDDEPPQGLLGDIVLCPEVAAKQGAEAATRHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGW 149 >gi|284047990|ref|YP_003398329.1| protein of unknown function UPF0054 [Acidaminococcus fermentans DSM 20731] gi|283952211|gb|ADB47014.1| protein of unknown function UPF0054 [Acidaminococcus fermentans DSM 20731] Length = 160 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 7/146 (4%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI + E KA+ + K + E+ + ++ I TLN +YRGID+PT+VL Sbjct: 11 EIAIPEELEETLKKAMDIVARKENLT--DNTEVDITIVNNEEIHTLNRDYRGIDRPTDVL 68 Query: 85 SFPTAFASS-----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 SF DG + +LGD++++ + G + +L +HG LHLLG Sbjct: 69 SFALDEGDEEPEVEDGEAEHLLGDVIISAPRAVEQGEEFGHGLTREMTYLAVHGMLHLLG 128 Query: 140 YDHVDDKDACVMEGLERSILEDLGIN 165 YDH+++ D VM E IL +L + Sbjct: 129 YDHMEEADKRVMRAREEEILRELDLA 154 >gi|170078371|ref|YP_001735009.1| hypothetical protein SYNPCC7002_A1764 [Synechococcus sp. PCC 7002] gi|238692816|sp|B1XPN9|RRMF_SYNP2 RecName: Full=Probable rRNA maturation factor gi|169886040|gb|ACA99753.1| conserved hypothetical protein (TIGR00043) [Synechococcus sp. PCC 7002] Length = 163 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 9/162 (5%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK--GYFVKENIVELSLVFTDSHR 66 P L+ +I VENA + L L + + + + + EL+L FT Sbjct: 3 PVLECEIFVENA---SGLELPELAIAPWENHLQRWLPELTAALPPADGYELTLRFTTDAE 59 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 I LN +YR D+PT+VLSF L LGDI+++ E + +A Sbjct: 60 IHNLNHQYRHKDQPTDVLSFAALEDNFASPLPPGEPLYLGDIIVSVETAQRQAQERQHSL 119 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L+ HG LHLLG+DH D+ M + +L ++ + Sbjct: 120 QTELGWLVSHGLLHLLGWDHPDEARLIEMLDRQAVLLRNVQL 161 >gi|161507652|ref|YP_001577606.1| hypothetical protein lhv_1302 [Lactobacillus helveticus DPC 4571] gi|172048292|sp|A8YVM8|RRMF_LACH4 RecName: Full=Probable rRNA maturation factor gi|160348641|gb|ABX27315.1| hypothetical protein lhv_1302 [Lactobacillus helveticus DPC 4571] Length = 174 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + L+ +K K+N +E+S+ F D R +N +YR Sbjct: 5 DVTYHDEVGFLDDKNRNWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDAIDLSVFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LE+ G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEECGLP 162 >gi|26553790|ref|NP_757724.1| hypothetical protein MYPE3350 [Mycoplasma penetrans HF-2] gi|29428203|sp|Q8EW68|RRMF_MYCPE RecName: Full=Probable rRNA maturation factor gi|26453797|dbj|BAC44128.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 150 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIV-ELSLVFTDSHRIETLNFEYRGIDKPTN 82 DE + ++ K VS I +K I+ EL ++ D++ + +N +YR D PT+ Sbjct: 8 DEKKFLSKKDISLIKKVSKFIFIEEKLKNKIIFELHII--DNNESQKINKQYRNKDYPTD 65 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 V+SF +F + +LG+I L+YE + +A FE L L+ HG HLLGYDH Sbjct: 66 VISF--SFWEEGLLKTALLGEIYLSYEKVVSQAEEFKHSFERELGFLVSHGIYHLLGYDH 123 Query: 143 VDDKDACVMEGLERSILEDLGI 164 ++ +A +M G + +L+ G+ Sbjct: 124 EEEDEAKIMFGKQYQVLKLCGL 145 >gi|291536163|emb|CBL09275.1| conserved hypothetical protein TIGR00043 [Roseburia intestinalis M50/1] Length = 165 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 17/151 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + E AK V++ + + E++L TD+ I +N EYR ID PT+VLSFP Sbjct: 14 SFDEEALAKEVTDY-AIEHEGFPFEAEINLTLTDNDGIHAINKEYRDIDAPTDVLSFPML 72 Query: 89 ---------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + +MLGDI+++ + ++ +A G + LI+H Sbjct: 73 SYESAGDFSKLEDDYDDNFNPDTGEIMLGDIIISVDKVKEQAKSYGHSEKREYAFLILHS 132 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHL GYDH+ ++A +MEG + IL ++ I Sbjct: 133 MLHLFGYDHMTPEEAAIMEGKQTEILNEMNI 163 >gi|51473908|ref|YP_067665.1| putative metalloprotease [Rickettsia typhi str. Wilmington] gi|59799025|sp|Q68W09|RRMF_RICTY RecName: Full=Probable rRNA maturation factor gi|51460220|gb|AAU04183.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 167 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 14/170 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + R + + + K N++ + +F K ELS++ T++ I Sbjct: 1 MINVEIVRNYNKWREH---RKINKGLIKKITQNVLVRFDHFDKIKQFELSILLTNTAEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGC----------SSLMLGDIVLAYEIIEIEANVL 118 TLN ++R I+K TNVLSFP + + LGDI YE+I E+ Sbjct: 58 TLNQQFRSIEKATNVLSFPNNELNWHNLYSKLEFLYYSDYMHLGDIAFCYEVIYNESCEQ 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +H++IH LHL+G+DH +D DA +ME LE IL GI PY Sbjct: 118 QKTFENHFIHMLIHSILHLIGFDHQNDTDANIMESLEIEILSYFGIPSPY 167 >gi|295677635|ref|YP_003606159.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1002] gi|295437478|gb|ADG16648.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1002] Length = 153 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 78/163 (47%), Gaps = 14/163 (8%) Query: 8 LPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 P+L L + A W + L V+ I F EL++ F D+ Sbjct: 4 TPKLTLSLQFPAAKAWPEHKALLP------RTTVAGWIKAALFAD---GELTVRFVDAEE 54 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 55 GRTLNRTYRGKDYATNVLTFAYAESEDDPVT----GDLILCCPVVEKEAAEQGKPLAAHY 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME +E IL LG DPY+ Sbjct: 111 AHLLVHGTLHAQGYDHEVEEEAEEMEAIETEILARLGFPDPYQ 153 >gi|323466382|gb|ADX70069.1| Hypothetical cytosolic protein [Lactobacillus helveticus H10] Length = 174 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + L+ +K K+N +E+S+ F D R +N +YR Sbjct: 5 DVTYHDEVGFLDGKNRDWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIEDGEDAIDLSAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LE+ G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEECGLP 162 >gi|259503179|ref|ZP_05746081.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259168836|gb|EEW53331.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 159 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 17/164 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL I E A E L + V + +K N E+S+ + I L Sbjct: 1 MDLTIYDETAGRVSEGQL------ALIRDVLQFAAGKLSLKAN-TEMSVTLMTNPAIRKL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS----------SLMLGDIVLAYEIIEIEANVLGK 120 N +YRG+D+ T+VLSF + LGD+ ++ + + +A LG Sbjct: 54 NQQYRGVDRATDVLSFAAEERGDETPIIMAPELAAEIPENLGDLFVSVDKVAEQAKFLGH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L++HGFLHL GYDH + D M L+R IL + G+ Sbjct: 114 SADRELGFLVVHGFLHLNGYDHEEPADEQRMFDLQREILNEYGL 157 >gi|291530789|emb|CBK96374.1| conserved hypothetical protein TIGR00043 [Eubacterium siraeum 70/3] gi|291557706|emb|CBL34823.1| conserved hypothetical protein TIGR00043 [Eubacterium siraeum V10Sc8a] Length = 169 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 7/145 (4%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + V K ++ + FV + ++S+ D+ RI+ +N E+R +K T+V+S Sbjct: 25 IEVPNGLRTVIRKCIAETLRVTDFVGD--ADVSVTLVDNERIKRINKEFRDKNKVTDVIS 82 Query: 86 FPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP + + + MLGDIV++ E +A G + L H LHLLGYD Sbjct: 83 FPLGAYDEYDVNPENGAYMLGDIVISMEKAHAQAIEYGHSLIREVGFLATHSTLHLLGYD 142 Query: 142 HVDDKD-ACVMEGLERSILEDLGIN 165 H DD D VM L+ +L +L I Sbjct: 143 HEDDPDGEKVMLELQDLVLNNLKIT 167 >gi|124268424|ref|YP_001022428.1| hypothetical protein Mpe_A3240 [Methylibium petroleiphilum PM1] gi|171769843|sp|A2SKV4|RRMF_METPP RecName: Full=Probable rRNA maturation factor gi|124261199|gb|ABM96193.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 149 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 20/169 (11%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M + +L LQ A D H L + + + E+++ Sbjct: 1 MKRPARPVLKLSLQFA-------DASHRAQLPRHKVLRWIRAALDV-------PAEITVR 46 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 + LN +YR D TNVL+F +++ D++L ++E EA G+ Sbjct: 47 IVGTDEGRALNRDYRQKDYATNVLTFDYE------AEPVVVADLILCAPVVEREARDEGR 100 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 E H HL++HG LH G+DH + +A ME E +L LG DPY Sbjct: 101 SLEAHYAHLLVHGTLHAQGHDHEIEAEAQAMEARETEVLRALGYADPYA 149 >gi|153853176|ref|ZP_01994585.1| hypothetical protein DORLON_00570 [Dorea longicatena DSM 13814] gi|149753962|gb|EDM63893.1| hypothetical protein DORLON_00570 [Dorea longicatena DSM 13814] Length = 164 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 17/155 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 ++ L CE + + V + Y E++L+ T++ +I +N E+RGID+ T+VL Sbjct: 10 DVKLPLECEALAKRVVEEALD--YVGCPYEAEVNLLLTENAQIHEMNKEFRGIDRATDVL 67 Query: 85 SFPTAFASSDGCSSLM---------------LGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP G + LGDIV++ E + +A G L Sbjct: 68 SFPMIDYPEPGTFDFLEEQEDCFDPESGELTLGDIVISKEKVLAQAEEYGHSPMREYAFL 127 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I H LHL GYDH++D++ VME +R I+E L I Sbjct: 128 IAHSVLHLTGYDHMEDEERQVMEQKQREIMERLDI 162 >gi|296112099|ref|YP_003622481.1| hypothetical protein LKI_09865 [Leuconostoc kimchii IMSNU 11154] gi|295833631|gb|ADG41512.1| hypothetical protein LKI_09865 [Leuconostoc kimchii IMSNU 11154] Length = 160 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 18/166 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL I + + + H A+ N S + + E+S+ F ++ I+ Sbjct: 1 MDLAIIDQTSKGVSQYH------QDLVNAILNF-SGTFLKLPDNTEMSVTFVNNDEIQQY 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL----------MLGDIVLAYEIIEIEANVLGK 120 N +YRG+DKPT+V+SF D +GDI+++ ++I +A LG Sbjct: 54 NRQYRGVDKPTDVISFAIEEGEDDFDILPDQEWANDIAKNIGDILVSVDVIASQATYLGH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 +E L L++HGFLHL GYDH+ D + M L+R IL+D G+ Sbjct: 114 SYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQRKILDDYGLK 159 >gi|260101322|ref|ZP_05751559.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260084907|gb|EEW69027.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 174 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + L+ +K K+N +E+S+ F D R +N +YR Sbjct: 5 DVTYHDEVGFLDDKNRDWRDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIQDGEDAIDLSAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LE+ G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEECGLP 162 >gi|29832127|ref|NP_826761.1| putative metalloprotease [Streptomyces avermitilis MA-4680] gi|46577428|sp|Q82BX0|RRMF_STRAW RecName: Full=Probable rRNA maturation factor gi|29609245|dbj|BAC73296.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 165 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ E + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPMKDDDEPPQGLLGDIVLCPEVAERQGKEAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ G+ P Sbjct: 111 EELQLLAVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRAEKGLTGP 158 >gi|225378120|ref|ZP_03755341.1| hypothetical protein ROSEINA2194_03780 [Roseburia inulinivorans DSM 16841] gi|225210121|gb|EEG92475.1| hypothetical protein ROSEINA2194_03780 [Roseburia inulinivorans DSM 16841] Length = 165 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 18/150 (12%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--- 88 E + + ++ + F E E++L D+ I +N E+R ID+PT+VLSFP Sbjct: 17 VEALAGEVINFTLEHEDFPYEP--EVNLTLVDNEGIHAINKEFREIDRPTDVLSFPMLSY 74 Query: 89 -------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + +MLGDIV++ + + +A G + LI+H L Sbjct: 75 ENAGDFSKLEDDYDDNFNPDTGEIMLGDIVISVDKVLEQAESYGHTTKREYAFLIVHSML 134 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HL GYDH+ ++A VME ++ IL+++ I Sbjct: 135 HLFGYDHMTPEEAAVMEAKQKQILDEMNIT 164 >gi|126727645|ref|ZP_01743477.1| hypothetical protein RB2150_15740 [Rhodobacterales bacterium HTCC2150] gi|126703061|gb|EBA02162.1| hypothetical protein RB2150_15740 [Rhodobacterales bacterium HTCC2150] Length = 188 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 18/166 (10%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E+ W + + +++L ++ + +S++ D +I TLN ++RG Sbjct: 17 IEDDRWR-AADFDDHARIAASATLTHL-----GLRVDDYLISVLACDDAKIATLNADFRG 70 Query: 77 IDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 PTNVLS+P+ LGDI ++++ EA V FE Sbjct: 71 KPTPTNVLSWPSEERGVEVAGDTPELPDIGQEIPYELGDIAISFDTCLQEAKVSNTPFEQ 130 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H++HL+IHG LHLLGYDH+ DKDA +MEG+E +L LG+ DPY Sbjct: 131 HVLHLMIHGTLHLLGYDHIFDKDAALMEGIETEVLATLGVPDPYAA 176 >gi|167749631|ref|ZP_02421758.1| hypothetical protein EUBSIR_00589 [Eubacterium siraeum DSM 15702] gi|167657384|gb|EDS01514.1| hypothetical protein EUBSIR_00589 [Eubacterium siraeum DSM 15702] Length = 169 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 7/145 (4%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + V K ++ + FV + ++S+ D+ RI+ +N E+R +K T+V+S Sbjct: 25 IEVPNGLRTVIRKCIAETLRVTDFVGD--ADVSVTLVDNERIKRINKEFRDKNKVTDVIS 82 Query: 86 FPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 FP + + + MLGDIV++ E +A G + L H LHLLGYD Sbjct: 83 FPLGAYDEYDVNPENGAYMLGDIVISMEKAHAQAIEYGHSLVREVGFLATHSTLHLLGYD 142 Query: 142 HVDDKD-ACVMEGLERSILEDLGIN 165 H DD D VM L+ +L +L I Sbjct: 143 HEDDPDGEKVMLELQDLVLNNLKIT 167 >gi|134098070|ref|YP_001103731.1| putative metalloprotease [Saccharopolyspora erythraea NRRL 2338] gi|291007471|ref|ZP_06565444.1| putative metalloprotease [Saccharopolyspora erythraea NRRL 2338] gi|166231386|sp|A4F9T1|RRMF_SACEN RecName: Full=Probable rRNA maturation factor gi|133910693|emb|CAM00806.1| protein of unknown function UPF0054 [Saccharopolyspora erythraea NRRL 2338] Length = 183 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + E + ++ K + ELS+V + + L Sbjct: 1 MSIEIANESGVEVPEPSIVSVARFALDKM----------SVSQLAELSIVLVELDVMSDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V++FP S G +LGDIVL + +A G + Sbjct: 51 HERWMDLPGPTDVMAFPMDEYDSSRRPDSAGAGPALLGDIVLCPAFAKDQARKAGHSLLD 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + ++ M GL+ IL D Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPEEEREMFGLQNQILADF 148 >gi|283769579|ref|ZP_06342475.1| metalloprotein, YbeY/ UPF0054 family [Bulleidia extructa W1219] gi|283103847|gb|EFC05233.1| metalloprotein, YbeY/ UPF0054 family [Bulleidia extructa W1219] Length = 147 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDI 104 ++ + E+S+ F S I +N +YRGID+PT+V+SF + + LGD+ Sbjct: 27 AEAVLQLDEKKEISVTFVRSRTIHRINRDYRGIDRPTDVISFAIQDG-GEEIETHDLGDL 85 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + + +A G + L HG LH LGYDH + K+ M L+ +LE GI Sbjct: 86 FINVDYAVRQAKEYGHSEKREFCFLFAHGLLHCLGYDHRNPKEEKKMIALQNQLLE--GI 143 Query: 165 ND 166 D Sbjct: 144 AD 145 >gi|167746974|ref|ZP_02419101.1| hypothetical protein ANACAC_01686 [Anaerostipes caccae DSM 14662] gi|167653934|gb|EDR98063.1| hypothetical protein ANACAC_01686 [Anaerostipes caccae DSM 14662] Length = 165 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 17/144 (11%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 CE++ + V + Y E++L+ ++ I +N E RGID+PT+VLSFP Sbjct: 17 CEMIAGQVVEAAVD--YVTCPFECEVNLMLVGNNEIHRINLEQRGIDRPTDVLSFPMVEY 74 Query: 92 SSDGC---------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 GC LMLGDIV++ + + +A G E LI H LH Sbjct: 75 EKPGCFDGLEEDPAAFHPDSGELMLGDIVISMDKAKEQAEAYGHSLEREYAFLIAHSMLH 134 Query: 137 LLGYDHVDDKDACVMEGLERSILE 160 L GYDH++D++ VME + IL+ Sbjct: 135 LFGYDHMEDEERAVMEEKQEEILQ 158 >gi|297199578|ref|ZP_06916975.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197713494|gb|EDY57528.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 165 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDTDAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVL--GKEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAKRQGEEAETQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRQEKGLTGP 158 >gi|302551323|ref|ZP_07303665.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302468941|gb|EFL32034.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 165 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVL--GKEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAQKQGQEAETQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRAERGLTGP 158 >gi|227529164|ref|ZP_03959213.1| metal-dependent hydrolase [Lactobacillus vaginalis ATCC 49540] gi|227350889|gb|EEJ41180.1| metal-dependent hydrolase [Lactobacillus vaginalis ATCC 49540] Length = 159 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 10/124 (8%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC----------SSLML 101 + E+S+ ++ I LN YR +D+ T+VLSF + ++ + L Sbjct: 35 ADDTEMSVTLVNNPEIRELNSRYRHVDRATDVLSFAAEESGNETPIILAPELAAELPVNL 94 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GD+ ++ + + +A LG F+ L L++HGFLHL GYDH +D M L+R IL+ Sbjct: 95 GDLFISIDKVAEQAKFLGHSFDRELGFLVVHGFLHLNGYDHEQPEDEKKMFTLQREILDQ 154 Query: 162 LGIN 165 G+ Sbjct: 155 YGLK 158 >gi|307730934|ref|YP_003908158.1| hypothetical protein BC1003_2914 [Burkholderia sp. CCGE1003] gi|307585469|gb|ADN58867.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1003] Length = 153 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 77/163 (47%), Gaps = 14/163 (8%) Query: 8 LPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 P+L L + A W + L V+ I F EL++ F D+ Sbjct: 4 APKLTLNLQFPAAKAWPEHKALLP------RATVAGWIKAALFAD---GELTVRFVDAEE 54 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 55 GRTLNRTYRGKDYSTNVLTFAYAESEDDPVT----GDLILCCPVVEKEAAEQGKPLVAHY 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME LE IL LG DPY Sbjct: 111 AHLLVHGTLHAQGYDHEAEEEAEEMEALETEILGKLGFADPYR 153 >gi|295838976|ref|ZP_06825909.1| metalloprotease [Streptomyces sp. SPB74] gi|197695531|gb|EDY42464.1| metalloprotease [Streptomyces sp. SPB74] Length = 165 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + + + +S ELS++ D +E L Sbjct: 1 MSIDVNNESGTEADEEAILDIARYALGRMRIHPLS----------ELSVILVDGPAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ E + + Sbjct: 51 HVQWMDLPGPTDVMSFPMDELRPPVKDDEQPPQGLLGDIVLCPEVAERQGREAPTEHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+++I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQQAIVDGWRGERGLTGP 158 >gi|114778655|ref|ZP_01453471.1| Predicted metal-dependent hydrolase [Mariprofundus ferrooxydans PV-1] gi|114551120|gb|EAU53681.1| Predicted metal-dependent hydrolase [Mariprofundus ferrooxydans PV-1] Length = 159 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 7/161 (4%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + L I V++ L D + A AV S F E + L + F + Sbjct: 1 MSESRLDIIVDDELAEDFTPPENI-----AAAVQAACSVAGFQNEPM--LCIRFAGDAEV 53 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN ++RG+D T+VLSFP S + LGDI LA ++ EA LG +H++ Sbjct: 54 RELNSQWRGLDCVTDVLSFPMQDDSDAIDPNQSLGDIALALPFVQQEAGRLGLPQADHIL 113 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HLI+H LHLL YDH+DD++A M+ LER ++ LG++DPY Sbjct: 114 HLIVHATLHLLDYDHIDDEEAAQMQQLERQAMQQLGLHDPY 154 >gi|317122974|ref|YP_004102977.1| hypothetical protein Tmar_2170 [Thermaerobacter marianensis DSM 12885] gi|315592954|gb|ADU52250.1| protein of unknown function UPF0054 [Thermaerobacter marianensis DSM 12885] Length = 173 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 15/149 (10%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 +AV+N D + + + V L++ VE+SL F D I LN Y Sbjct: 14 VAVDNRQ--DRVAVPDHWPSLLPAVVERLLAAEGLAVP--VEVSLTFVDDAAIHELNRRY 69 Query: 75 RGIDKPTNVLSFPTAFASSD-----------GCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 RG D PT+VLSFP G L LGD+V++ E +A G + Sbjct: 70 RGKDAPTDVLSFPQLEQEEIAALRDPVPAVLGPDLLPLGDVVISLERAAAQAREYGHSLD 129 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVME 152 + +L+ HG LHLLGYDH D + +M Sbjct: 130 REVGYLLAHGVLHLLGYDHPDAEGERLMH 158 >gi|91785152|ref|YP_560358.1| hypothetical protein Bxe_A0628 [Burkholderia xenovorans LB400] gi|123168087|sp|Q13UD3|RRMF_BURXL RecName: Full=Probable rRNA maturation factor gi|91689106|gb|ABE32306.1| Protein of unknown function UPF0054 [Burkholderia xenovorans LB400] Length = 153 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 8 LPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 P+L L + A W + L AV+ I F EL++ F D+ Sbjct: 4 TPKLTLNLQFPAAKAWPEHKALLP------RAAVAGWIKAALFAD---GELTVRFVDAEE 54 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 55 GRTLNRTYRGKDYSTNVLTFAYAESEDDPVT----GDLILCCPVVEKEAAEQGKPLVAHY 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME +E IL LG DPY+ Sbjct: 111 AHLLVHGTLHAQGYDHEVEEEAEEMEAIETEILGKLGFPDPYQ 153 >gi|256375388|ref|YP_003099048.1| metalloprotease [Actinosynnema mirum DSM 43827] gi|255919691|gb|ACU35202.1| protein of unknown function UPF0054 [Actinosynnema mirum DSM 43827] Length = 187 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ DE + + + ELS++ + + L Sbjct: 1 MSIEIANESGAQVDEASIVAAARFALDRM----------GVSPLAELSVLLVELDVMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V++FP + G +LGDIVL E +A G + Sbjct: 51 HQRWMDLPGPTDVMAFPMDELDSARRPDAAGLGPALLGDIVLCPAFAEDQAAKAGHSLMD 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M L+ IL D Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPAEEREMFTLQNRILGDY 148 >gi|157828976|ref|YP_001495218.1| putative metalloprotease [Rickettsia rickettsii str. 'Sheila Smith'] gi|166228797|sp|A8GTI5|RRMF_RICRS RecName: Full=Probable rRNA maturation factor gi|157801457|gb|ABV76710.1| hypothetical protein A1G_06285 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 167 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 14/170 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + + + + + K N++ + F K ELS++ T++ I Sbjct: 1 MINVEIVRHYNKWREH---KQINKSLIKKITQNILLRFDNFSKIKQFELSILLTNAAEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 LN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 58 ILNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQ 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 118 YKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFPPY 167 >gi|331091150|ref|ZP_08339992.1| hypothetical protein HMPREF9477_00635 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405372|gb|EGG84908.1| hypothetical protein HMPREF9477_00635 [Lachnospiraceae bacterium 2_1_46FAA] Length = 164 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 17/156 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ L CE + V ++ Y E++L+ T + I+ +N E+R ID+ T+VL Sbjct: 10 ELKLDLECETLAETVVEGVLD--YEKCPYEAEVNLLLTMNKEIQEMNAEFRHIDRATDVL 67 Query: 85 SFPT---------AFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP AF D LMLGDIV++ E + +A G + L Sbjct: 68 SFPMIDYEKAGEFAFLEEDDSYFNCDTGELMLGDIVISKEKVIAQAEEYGHTIKREYAFL 127 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 I H LHLLGYDH+++++ ME ++ ILE LGI Sbjct: 128 IAHSMLHLLGYDHMEEQERLEMERKQKEILEQLGIT 163 >gi|294341620|emb|CAZ90037.1| putative metal-dependent hydrolase [Thiomonas sp. 3As] Length = 175 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 15/168 (8%) Query: 9 PRLDLQIAVENALWGDEIH---LRTLCEVVFA---KAVSNLISKGYFVKENIVELSLVFT 62 P L L + + D++ L +++ L G + + +++L F Sbjct: 10 PALRLSVQFADTTHRDQLPRALLLRWVRAALRVGPESLDALPQAGALSEAH--QITLRFV 67 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 + LN YRG D PTNVL+F D + DIVL ++ EA K Sbjct: 68 AADEGRALNRAYRGKDYPTNVLTF-------DYNHWPVQADIVLCCPVVAGEALAQHKPL 120 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H HL+IHG LH G+DH +++A ME E ++L+ GI+DPY Sbjct: 121 GAHYAHLVIHGLLHAQGWDHQTEREAQKMERQEVTVLQRFGISDPYAD 168 >gi|323527297|ref|YP_004229450.1| hypothetical protein BC1001_2976 [Burkholderia sp. CCGE1001] gi|323384299|gb|ADX56390.1| protein of unknown function UPF0054 [Burkholderia sp. CCGE1001] Length = 153 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 76/163 (46%), Gaps = 14/163 (8%) Query: 8 LPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 P+L L + A W + L V I F EL++ F D+ Sbjct: 4 APKLTLNLQFPAAKAWPEHKALLP------RATVGGWIKAALFAD---GELTVRFVDAEE 54 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 55 GRTLNRTYRGKDYSTNVLTFAYAESEDDPVT----GDLILCCPVVEKEAAEQGKPLVAHY 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME LE IL LG DPY Sbjct: 111 AHLLVHGTLHAQGYDHEVEEEAEEMEALETEILGKLGFPDPYR 153 >gi|255066351|ref|ZP_05318206.1| putative metalloprotease [Neisseria sicca ATCC 29256] gi|255049561|gb|EET45025.1| putative metalloprotease [Neisseria sicca ATCC 29256] Length = 171 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 14/163 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+ + A A E + ++SL+ D Sbjct: 19 LNFENASTAANLPSERDFYRWAWAALK------------NEYRRADISLILLDEEEARAY 66 Query: 71 NFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YRG D TNVLSF D S + GD+++ +++ EA GK E H H Sbjct: 67 NRDYRGKDYATNVLSFALNEGEILPDQFSDELCGDLIICPQVVLKEAAEQGKTAEQHFAH 126 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L +HG LHL+GYDH+++ +A ME LE +++ G +PY+ D Sbjct: 127 LTMHGTLHLMGYDHIEETEAEEMEALEIRLMQAAGYPNPYQED 169 >gi|225567934|ref|ZP_03776959.1| hypothetical protein CLOHYLEM_04007 [Clostridium hylemonae DSM 15053] gi|225163222|gb|EEG75841.1| hypothetical protein CLOHYLEM_04007 [Clostridium hylemonae DSM 15053] Length = 167 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 17/155 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E L CE + K + Y +++L+ T + +I+ +N E+RGID+PT+VL Sbjct: 13 ETVLPIPCEELARKVAEEALD--YTGCPYEAQVNLLLTTNLQIQEMNEEFRGIDRPTDVL 70 Query: 85 SFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP A L+LGDIV++ + + +A G + L Sbjct: 71 SFPMAEYEHPGDFGCLKEQEDCFDPESGELLLGDIVISKDKVISQAEEFGHSLKREYAFL 130 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I H LHL GYDH+++K+ ME +R IL L I Sbjct: 131 IAHSMLHLTGYDHMEEKERLDMEAKQREILNRLNI 165 >gi|325569846|ref|ZP_08145840.1| metal-dependent hydrolase [Enterococcus casseliflavus ATCC 12755] gi|325156969|gb|EGC69137.1| metal-dependent hydrolase [Enterococcus casseliflavus ATCC 12755] Length = 158 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 10/131 (7%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS----------FPTAFASSD 94 + G+ E+S+ F D+ I+ +N EYRG D PT+V+S P F + Sbjct: 27 AAGHLDLPADTEMSVTFMDNAAIQEINREYRGKDMPTDVISFAFEEETAEEMPIIFDEAL 86 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+++ E + +A G ++ L L +HGFLH+ GYDH+ +D M GL Sbjct: 87 EEMPRDLGDIMISIERAKEQAAEYGHTYDRELGFLALHGFLHINGYDHMTPEDEKEMFGL 146 Query: 155 ERSILEDLGIN 165 ++ IL+ G+ Sbjct: 147 QKEILDAYGLK 157 >gi|219847946|ref|YP_002462379.1| hypothetical protein Cagg_1028 [Chloroflexus aggregans DSM 9485] gi|254799905|sp|B8G6K6|RRMF_CHLAD RecName: Full=Probable rRNA maturation factor gi|219542205|gb|ACL23943.1| protein of unknown function UPF0054 [Chloroflexus aggregans DSM 9485] Length = 153 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 8/142 (5%) Query: 32 CEVVFAKAVSNLISKGYFVKENI---VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 ++ A+ ++ E + E+ + T + LN ++RG+D PT+VLSF Sbjct: 11 DDLAVDAALVERAAQAVLTAEQVPAGCEVCIRITTDAELHRLNRDFRGVDAPTDVLSFAD 70 Query: 89 AFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV- 143 SS LGDI ++Y+ + ++A G L +L +HG LHLLGYDH Sbjct: 71 DGNSSQFVTAPNLPRYLGDIAISYDRVLVQAAEYGHSPARELAYLTVHGMLHLLGYDHER 130 Query: 144 DDKDACVMEGLERSILEDLGIN 165 D +M E +++ LG+ Sbjct: 131 GPADEALMRAREEAVMTALGLP 152 >gi|320529428|ref|ZP_08030516.1| conserved hypothetical protein TIGR00043 [Selenomonas artemidis F0399] gi|320138394|gb|EFW30288.1| conserved hypothetical protein TIGR00043 [Selenomonas artemidis F0399] Length = 154 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 11/159 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++++I+ + +E+ + E +AV + G E+S+ T+ I Sbjct: 1 MMEIRISAQ----PEELCIAPGDEAAVRRAVETV---GRLYGAEGAEVSVTLTNDAYIHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +N +YRG+D+PT+V+SF + D + +LGD+V++ E +A G + Sbjct: 54 INRQYRGVDRPTDVISFALMESEEPEILDDPAGDVLGDLVISLERTRAQAEEYGHSYLRE 113 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L +HG LHLLGYDH+++ + ME +R ++E LGI Sbjct: 114 LSFLTVHGMLHLLGYDHMEEAERAEMEEEQRHVMEALGI 152 >gi|20807452|ref|NP_622623.1| putative metalloprotease [Thermoanaerobacter tengcongensis MB4] gi|26006913|sp|Q8RB52|RRMF_THETN RecName: Full=Probable rRNA maturation factor gi|20515977|gb|AAM24227.1| predicted metal-dependent hydrolase [Thermoanaerobacter tengcongensis MB4] Length = 158 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 9/113 (7%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPT---------AFASSDGCSSLMLGDIVLAYEII 111 F D+ I LN YRGID T+VLSFP D +GDIV++ E Sbjct: 44 FVDNEEIRKLNKYYRGIDSSTDVLSFPLMEFEEIEEGEEDEKDAEEIYPIGDIVISLEKA 103 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + +A G FE + +L +H LHLLGYDH +++ +M E ++E LG+ Sbjct: 104 KEQAEEYGHSFEREVAYLTVHSMLHLLGYDHETEEERKLMREKEEKVMERLGL 156 >gi|239623718|ref|ZP_04666749.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521749|gb|EEQ61615.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 165 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 66/139 (47%), Gaps = 16/139 (11%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------------- 88 L + Y E++++ TD+ I +N EYR ID PT+VLSFP Sbjct: 26 LAALDYEECPYEAEVNVILTDNEAIREINREYREIDSPTDVLSFPMVDYGTPSDFDHVEE 85 Query: 89 --AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + LMLGDIV++ + +E +A G L L+ H LHL GYDH+++ Sbjct: 86 AVEDYFNPETGELMLGDIVVSVDKVEEQAEKYGHSETRELAFLVAHSMLHLFGYDHMEEG 145 Query: 147 DACVMEGLERSILEDLGIN 165 + ME +R ILE G Sbjct: 146 EREQMEDRQRKILETRGYT 164 >gi|254392584|ref|ZP_05007761.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294812551|ref|ZP_06771194.1| Putative metalloprotease [Streptomyces clavuligerus ATCC 27064] gi|326440996|ref|ZP_08215730.1| metal-binding heat shock protein [Streptomyces clavuligerus ATCC 27064] gi|197706248|gb|EDY52060.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294325150|gb|EFG06793.1| Putative metalloprotease [Streptomyces clavuligerus ATCC 27064] Length = 165 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDERAILDIARYALARMRIHPLS----------ELSVIVVDAEAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVATRQGAEAPTGHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRAEQGLTGP 158 >gi|91206125|ref|YP_538480.1| putative metalloprotease [Rickettsia bellii RML369-C] gi|122425195|sp|Q1RGX3|RRMF_RICBR RecName: Full=Probable rRNA maturation factor gi|91069669|gb|ABE05391.1| Putative metal-dependent hydrolase [Rickettsia bellii RML369-C] Length = 183 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 26/182 (14%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I + W + + + + + K +S+ F + ELS++ T++ I Sbjct: 1 MINVEIIKNYSKWREH---KQINKALIKKITQKTLSQFDNFSEIKQFELSILLTNNEEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------------------ASSDGCSSLMLGDIVL 106 TLN ++R I+K TNVLSFP + + LGDI Sbjct: 58 TLNKQFRNIEKATNVLSFPANELNWQDLRFSGNEIASSNKPIILENLGDSDYMHLGDIAF 117 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 +++I E+ K FENH +HL+IH LHL+G+DH +D + +ME LE IL GI+ Sbjct: 118 CHDVIYNESYEQQKTFENHFIHLLIHSILHLIGFDHQNDTETKIMENLEIEILAHFGISS 177 Query: 167 PY 168 PY Sbjct: 178 PY 179 >gi|326381614|ref|ZP_08203308.1| metal-binding heat shock protein [Gordonia neofelifaecis NRRL B-59395] gi|326199861|gb|EGD57041.1| metal-binding heat shock protein [Gordonia neofelifaecis NRRL B-59395] Length = 180 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + E + + + ELS+ DS + L Sbjct: 1 MSIELFNESGIDVPEQLIIEAARFAMRRMEVH----------PGAELSIQLIDSESMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ + PT+V+SFP +D MLGDIVL E +A FE+ Sbjct: 51 HMQWMDLPGPTDVMSFPMDELTPGGRPDADDPGPAMLGDIVLCPEFAGEQAKSQHHSFEH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L +HG LHLLG+DH + +D M GL+ I+ + Sbjct: 111 EIAVLTVHGVLHLLGFDHAEPEDEREMFGLQGQIITEW 148 >gi|302560725|ref|ZP_07313067.1| metalloprotease [Streptomyces griseoflavus Tu4000] gi|302478343|gb|EFL41436.1| metalloprotease [Streptomyces griseoflavus Tu4000] Length = 165 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDAGAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAARQGEEAPTRHTMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRAERGLTGP 158 >gi|297588409|ref|ZP_06947052.1| probable metal-dependent hydrolase [Finegoldia magna ATCC 53516] gi|297573782|gb|EFH92503.1| probable metal-dependent hydrolase [Finegoldia magna ATCC 53516] Length = 153 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI+ + + L + E I + ++ E+SL F I+ L Sbjct: 1 MIIQISNRQDYFQIDDELTSDIESSIK------ICLIQELNDDNYEVSLSFVSEEEIKEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR D T+VLSFP + +LGDI++ + +A + +V+L+ Sbjct: 55 NRDYRNKDSVTDVLSFPLEDDFQ--IQTNLLGDIIICCKRAVEQAKEYNHSIKREIVYLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H HLLGYDH+D+ D +M E+S L+++GI Y+ + Sbjct: 113 VHSMFHLLGYDHIDESDKIIMRNKEKSALKEIGI---YKDE 150 >gi|296130045|ref|YP_003637295.1| protein of unknown function UPF0054 [Cellulomonas flavigena DSM 20109] gi|296021860|gb|ADG75096.1| protein of unknown function UPF0054 [Cellulomonas flavigena DSM 20109] Length = 150 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + DE L V + +L + D+ + L Sbjct: 1 MSVEVSNESGVEVDEAEFAALGRYVLDAMHVH----------PQADLFVRLVDTATMTDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + + PT+VLSFP D +LGD+VL E+ +A G + Sbjct: 51 HVRWMDEPGPTDVLSFPMDELTPGREGDPAGPGVLGDVVLCPEVAATQARAAGHSTAEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDHV+ + M L+R +L Sbjct: 111 LLLTTHGILHLLGYDHVEPDEEKEMFALQRRLL 143 >gi|254437107|ref|ZP_05050601.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 307] gi|198252553|gb|EDY76867.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 307] Length = 156 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 85/162 (52%), Gaps = 18/162 (11%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E+ W + L TL + A+S G ++ + E+S++ RI LN ++R Sbjct: 2 IEDDRW---LGLATLADRAAFAALS-----GVGLEASAFEISMLACGDTRISALNADFRQ 53 Query: 77 IDKPTNVLSFPTAFASSDGCSSLM----------LGDIVLAYEIIEIEANVLGKEFENHL 126 TNVLS+P++ +D + LGDI ++Y+ I EA G +H+ Sbjct: 54 KGAATNVLSWPSSERGADVDGDMPVQPQVPQDTQLGDIAISYDTIAREAAQSGTPLVDHV 113 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HLI+HG LHLLG+DHV D D +MEGLE IL L I DPY Sbjct: 114 THLIVHGTLHLLGFDHVRDLDGALMEGLETEILGKLDIRDPY 155 >gi|165933701|ref|YP_001650490.1| metal-binding heat shock protein [Rickettsia rickettsii str. Iowa] gi|189038666|sp|B0BV24|RRMF_RICRO RecName: Full=Probable rRNA maturation factor gi|165908788|gb|ABY73084.1| hypothetical metal-binding protein [Rickettsia rickettsii str. Iowa] Length = 167 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 14/170 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + + + + + K N++ + F K ELS++ T++ I Sbjct: 1 MINVEIVRHYNKWREH---KQINKSLIKKITQNILLRFDNFSKIKQFELSILLTNAAEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 LN ++R I+K TNVLSFP+ + LGDI YE+I E+ Sbjct: 58 ILNKQFRNIEKATNVLSFPSNELNWQDLYSKLEFLGDSDYMHLGDIAFCYEVIYNESCEQ 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI PY Sbjct: 118 HKTFENHFIHLLIHSILHLIGFDHQNDTEANIMENLEIEILSYFGIFPPY 167 >gi|118586861|ref|ZP_01544295.1| metal-dependent hydrolase [Oenococcus oeni ATCC BAA-1163] gi|118432693|gb|EAV39425.1| metal-dependent hydrolase [Oenococcus oeni ATCC BAA-1163] Length = 169 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 10/168 (5%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M+ K+ LD+ I +++ + L + V A A + + E+S+ Sbjct: 8 MNRKRNRKKMLDV-IVLDDKQKELDNDDAKLVKKVLAFAFD------FMQLKQNYEMSVN 60 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LGDIVLAYEIIEIEANVL 118 F + +I +N EYR D+ T+V+SF + + LGD+ ++ + +A Sbjct: 61 FVNDEKIHQINKEYRNTDRATDVISFALEESDRIHIDGVAEELGDLFISLDHAHAQAEEY 120 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDAC-VMEGLERSILEDLGIN 165 + L +L +HGFLHLLGYDH + A M GL+ ILE G+ Sbjct: 121 LHSYNRELAYLAVHGFLHLLGYDHTRSQAAEDEMFGLQDKILEGYGLT 168 >gi|323141990|ref|ZP_08076841.1| translation metalloprotein YbeY [Phascolarctobacterium sp. YIT 12067] gi|322413522|gb|EFY04390.1| translation metalloprotein YbeY [Phascolarctobacterium sp. YIT 12067] Length = 168 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 12/162 (7%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +EN E+ + L + + + +E+ E+ + D I LN EY Sbjct: 3 INLENDQQKLELSAQVLER--LQEGLQAVARLNELPEES--EVDVTIVDDEEIHALNREY 58 Query: 75 RGIDKPTNVLSFPTAFASS--------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 RG+DKPT+VLSF G + GDI+++ E +A G E + Sbjct: 59 RGMDKPTDVLSFALDEDCEDEDEPELIGGPEEHLFGDIIISAETALRQAEEYGHGLEREM 118 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +L +HG HLLGYDH+ ++D M E L + +++ Y Sbjct: 119 TYLAVHGMFHLLGYDHMTEEDKAEMRAKEEEALRAINLSEEY 160 >gi|323342100|ref|ZP_08082333.1| metal-dependent hydrolase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464525|gb|EFY09718.1| metal-dependent hydrolase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 147 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 5/134 (3%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E + + ++K F +N VE+++V D I N E+R ID+PT+VLSF Sbjct: 18 ETYLSPILEETLNKTGF--KNPVEVNVVLVDDPSIHNFNKEFRDIDRPTDVLSF---EDG 72 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 S M+GDI+++ + I +A G + L+ HG+LHLLGYDH ++ VM Sbjct: 73 SMEGEVFMMGDIIISVDAIRRQAEEYGHSIKREFCFLVAHGYLHLLGYDHHTPEEEVVMF 132 Query: 153 GLERSILEDLGIND 166 GL++ IL D+ D Sbjct: 133 GLQKEILHDIARKD 146 >gi|311108331|ref|YP_003981184.1| metalloprotein, YbeY family protein [Achromobacter xylosoxidans A8] gi|310763020|gb|ADP18469.1| metalloprotein, YbeY family protein [Achromobacter xylosoxidans A8] Length = 157 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 46/116 (39%), Positives = 60/116 (51%), Gaps = 4/116 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + ELSL + LN ++RG D TNVL+F + GDIV+ ++ Sbjct: 43 SAAELSLRLVGAAEGRRLNRDFRGRDYATNVLTFEYGVDPL----GVARGDIVMCVPVLV 98 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 EA K +H HL IHG LH LGYDH+ +DA ME LE + L D+ I DPY Sbjct: 99 REAREQRKALLDHAAHLTIHGVLHALGYDHIKARDAKRMEALETATLADMRIADPY 154 >gi|239941042|ref|ZP_04692979.1| putative metalloprotease [Streptomyces roseosporus NRRL 15998] gi|239987521|ref|ZP_04708185.1| putative metalloprotease [Streptomyces roseosporus NRRL 11379] gi|291444482|ref|ZP_06583872.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347429|gb|EFE74333.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 165 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 17/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDTDAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEEAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGW 149 >gi|289450697|ref|YP_003475263.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185244|gb|ADC91669.1| GTP-binding protein Era [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 563 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 16/168 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENI-VELSLVFTDSHRIETLN 71 +Q E W LR + S L Y +E + E ++ F + + +LN Sbjct: 3 IQFQKEKCKWST-AELRQIIRYTLQAGFSYLPFSDYLSEEGLQPEFAVTFIGADAMRSLN 61 Query: 72 FEYRGIDKPTNVLSFPT-------------AFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 E RGIDK T+VLSFP A + +S+ LGDIV+ + E +A Sbjct: 62 KEQRGIDKVTDVLSFPMLAMKKGALEEHLTAADINPENNSVFLGDIVICLDRAEEQALEF 121 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGIN 165 + + L +H LHL+GYDHVD++ D ME ++R +L++LGI Sbjct: 122 NHTMQREVAFLTLHSMLHLVGYDHVDNETDRLEMEEIQRELLDNLGIK 169 >gi|297194455|ref|ZP_06911853.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718735|gb|EDY62643.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 165 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 17/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + ++ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALSRMRIHPLS----------ELSVIVVDAEAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDEEPPQGLLGDIVLCPEVAKKQGEEAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGW 149 >gi|154483546|ref|ZP_02025994.1| hypothetical protein EUBVEN_01250 [Eubacterium ventriosum ATCC 27560] gi|149735456|gb|EDM51342.1| hypothetical protein EUBVEN_01250 [Eubacterium ventriosum ATCC 27560] Length = 166 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 22/170 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I E D + + V +AV + E+++ D++ I + Sbjct: 1 MNIYIENEYDREID-VDYTDIINKVVCQAVD------FIKCPYECEVNVTIVDNNTIHEI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEA 115 N E R ID+PT+VLSFP + L+LGDIV++Y+ + +A Sbjct: 54 NREQRKIDRPTDVLSFPMLDYEVAGDFSMAEDDISNFNPDSGELILGDIVISYDKVIEQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L+ H LHL G+DH+ D + ME + IL +LGI Sbjct: 114 AEYNHSRKRELAFLVAHSMLHLFGFDHMVDDERIEMEEKQNIILNNLGIT 163 >gi|294085155|ref|YP_003551915.1| putative metal-dependent hydrolase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664730|gb|ADE39831.1| Predicted metal-dependent hydrolase [Candidatus Puniceispirillum marinum IMCC1322] Length = 240 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 77/169 (45%), Gaps = 18/169 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I ++ W + + F + + +S +SL+ +I LN Sbjct: 38 IDIMTDHDCWS--AAMLGDVKAHFCQILDRALSAHDM---KDCAVSLLLCSDAKIRQLNH 92 Query: 73 EYRGIDKPTNVLSFPTAFASSDG-------------CSSLMLGDIVLAYEIIEIEANVLG 119 ++RGIDK TNVLSFP A LGDI +AY I EA Sbjct: 93 DHRGIDKATNVLSFPAADDDDMPYAMGAMDADDDNAPQRQELGDIAIAYGICAREAEESS 152 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HL HG LHLLGYDH D +A ME LE S+LE LGI +PY Sbjct: 153 IRISDHITHLFGHGVLHLLGYDHDQDAEADAMEALEISLLEALGIANPY 201 >gi|261364225|ref|ZP_05977108.1| putative metalloprotease [Neisseria mucosa ATCC 25996] gi|288567840|gb|EFC89400.1| putative metalloprotease [Neisseria mucosa ATCC 25996] Length = 171 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 15/175 (8%) Query: 4 KKVNLPRLDLQ-----IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + P L LQ + ENA + L + E F + + Y ++S Sbjct: 3 RAKKYPFLSLQRQRFCLNFENA--STAVDLPS--ERDFYRWAWAALKSEY----RRTDIS 54 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEAN 116 L+ D N +YRG D TNVLSF D S + GD+++ +++ EA Sbjct: 55 LILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPDQVSDDLCGDLIICPQVVLKEAA 114 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 GK E H HL +HG LHL+GYDH+++ +A ME LE +++ G +PY+ D Sbjct: 115 EQGKTAEQHFAHLTMHGTLHLMGYDHIEEAEAEEMEALEIRLMQAAGYPNPYQED 169 >gi|302518989|ref|ZP_07271331.1| metal-dependent hydrolase [Streptomyces sp. SPB78] gi|318062407|ref|ZP_07981128.1| metal-binding heat shock protein [Streptomyces sp. SA3_actG] gi|318079398|ref|ZP_07986730.1| metal-binding heat shock protein [Streptomyces sp. SA3_actF] gi|333027184|ref|ZP_08455248.1| putative metalloprotease [Streptomyces sp. Tu6071] gi|302427884|gb|EFK99699.1| metal-dependent hydrolase [Streptomyces sp. SPB78] gi|332747036|gb|EGJ77477.1| putative metalloprotease [Streptomyces sp. Tu6071] Length = 165 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + + + +S ELS++ D +E L Sbjct: 1 MSIDVNNESGTEADEEAILDIARYALGRMRIHPLS----------ELSVILVDGPAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ E + + Sbjct: 51 HVQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAERQGREAPTEHSTD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+++I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQQAIVDGWRGERGLTGP 158 >gi|294629266|ref|ZP_06707826.1| metalloprotease [Streptomyces sp. e14] gi|292832599|gb|EFF90948.1| metalloprotease [Streptomyces sp. e14] Length = 165 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPGKDEEEPPQGLLGDIVLCPEVAAKQGAEAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++D G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDDWRAEKGLTGP 158 >gi|229916329|ref|YP_002884975.1| hypothetical protein EAT1b_0598 [Exiguobacterium sp. AT1b] gi|259647091|sp|C4L408|RRMF_EXISA RecName: Full=Probable rRNA maturation factor gi|229467758|gb|ACQ69530.1| protein of unknown function UPF0054 [Exiguobacterium sp. AT1b] Length = 158 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 8/150 (5%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 DE L T ++ +++ ++ V+E ELS+ + + I +N E+RG D PT+ Sbjct: 6 NDEHELLTTSQIELVESILQHAAQLEGVEE-PSELSVTYLTNAEIHEVNREWRGKDAPTD 64 Query: 83 VLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 V+SF D +LGD+V++ E +A G FE L L IHGFL Sbjct: 65 VISFAFDEMGDEEMDFMLDEDEPHLLGDLVISVERCREQAADYGHSFERELGFLAIHGFL 124 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HLLGYDH+ ++ M + +L + Sbjct: 125 HLLGYDHMTPEEEAEMTARQEEVLTHFELK 154 >gi|225027038|ref|ZP_03716230.1| hypothetical protein EUBHAL_01294 [Eubacterium hallii DSM 3353] gi|224955502|gb|EEG36711.1| hypothetical protein EUBHAL_01294 [Eubacterium hallii DSM 3353] Length = 169 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 18/148 (12%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E V + + Y ++ ++ TD+ I +N E+R ID+PT+VLSFP A Sbjct: 18 ETVIKNVIEAALD--YEKCPYEAQVYVLLTDNEEIHEINKEHRQIDRPTDVLSFPMADYP 75 Query: 93 SDG----------------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 G L+LGDI+++ + ++ +A G L L+ H LH Sbjct: 76 VPGDFSDIEERDPDAFHPETGELILGDIIISMDKVKEQAKAYGHSNTRELAFLVAHSMLH 135 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGI 164 L+GYDH+ D++ VME + IL++ G Sbjct: 136 LMGYDHMVDEERKVMEAKQEEILKNCGY 163 >gi|331001780|ref|ZP_08325302.1| hypothetical protein HMPREF0491_00164 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412754|gb|EGG92137.1| hypothetical protein HMPREF0491_00164 [Lachnospiraceae oral taxon 107 str. F0167] Length = 164 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 22/170 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I+ E+ +I L E + K V + S + E+S+ D I + Sbjct: 1 MTIEISYES-----KIKLDIPYEDIINKMV--VASLDFEDCPYEAEVSVTIVDDDEIRRI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEA 115 N EYRGIDK T+VLSFP + L+LGDI+L+ E I +A Sbjct: 54 NNEYRGIDKSTDVLSFPFNEFDIPGNFDNVEENVDAFNPESGELLLGDIILSTEHIIEQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L L++H LHL+GYDH+ D + ME +R ILE GI+ Sbjct: 114 REYGHSETRELAFLVVHSMLHLMGYDHMIDDERKDMEDRQRKILEFEGIS 163 >gi|269123310|ref|YP_003305887.1| hypothetical protein Smon_0530 [Streptobacillus moniliformis DSM 12112] gi|268314636|gb|ACZ01010.1| protein of unknown function UPF0054 [Streptobacillus moniliformis DSM 12112] Length = 154 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 11/159 (6%) Query: 10 RLDLQIA---VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 L+L I+ ++N + +E + E V + + K + +SL+ TD+ Sbjct: 1 MLNLDISFKDIDNKEYINEDKILEFSEFVIKNEREDYLDKELY-------ISLLLTDNKN 53 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 I+ +N EYR D PT+V+SF + G ++GDIV++ + +E ++ Sbjct: 54 IQEINREYREKDSPTDVISFAYNETENFG-GVEVVGDIVISLDRVEEQSKEYNHSVIREF 112 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++++HG LH+LGYDH+++ D +M E L Sbjct: 113 YYVLVHGLLHILGYDHIEEDDKKIMREKEEYYLSKFNYT 151 >gi|227504551|ref|ZP_03934600.1| metalloprotease [Corynebacterium striatum ATCC 6940] gi|227198871|gb|EEI78919.1| metalloprotease [Corynebacterium striatum ATCC 6940] Length = 201 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 20/162 (12%) Query: 11 LDLQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + ++ E+ G +E L + F N E ++ D I Sbjct: 1 MSIEFINESGFEGVNEEMLIDVASFAFGAMDIN----------PDAECTITAVDLETIAD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF---------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 L+ + ++ PT+V+SFP + MLGDIVL E +AN G Sbjct: 51 LHVRWMDLEGPTDVMSFPMDEITPGALGTRPDAPEMGPAMLGDIVLCPEFALRQANAAGH 110 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLGYDH + M L+ +L D Sbjct: 111 SLGHELALLTVHGCLHLLGYDHATPAEEKEMFSLQNELLADW 152 >gi|229824092|ref|ZP_04450161.1| hypothetical protein GCWU000282_01396 [Catonella morbi ATCC 51271] gi|229786446|gb|EEP22560.1| hypothetical protein GCWU000282_01396 [Catonella morbi ATCC 51271] Length = 176 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 30/170 (17%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+ +L E + + + + Y +EL L + I+ LN +YRG+DKPT+V Sbjct: 8 DQAYLAAGQEKLLHEVIEA--AAKYLKLPGGIELDLSIVSNEEIQALNRDYRGLDKPTDV 65 Query: 84 LSFPTAFASSD----------------------------GCSSLMLGDIVLAYEIIEIEA 115 LSF SS+ LGDI+++Y + +A Sbjct: 66 LSFALTEVSSEYDVDFAHLDLAEEAEETEDLEETEFEEEEAIPQHLGDIIISYPRAQEQA 125 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + L L +HGFLHL GYDH +++A M ++ +L G+ Sbjct: 126 QDYGHSLDRELAFLAVHGFLHLNGYDHQTEEEAQEMFRIQEEVLTTYGLT 175 >gi|269956974|ref|YP_003326763.1| hypothetical protein Xcel_2187 [Xylanimonas cellulosilytica DSM 15894] gi|269305655|gb|ACZ31205.1| protein of unknown function UPF0054 [Xylanimonas cellulosilytica DSM 15894] Length = 153 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 11/153 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + L E FA ++ + + ELS++F D+ + L Sbjct: 1 MSIEVANESGY-----DVEGLDEAEFAALARYVLDAMHVHPQ--AELSILFVDTTVMTDL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + + PT+VLSFP D LGDIVL E+ +A G + Sbjct: 54 HVRWMDEPGPTDVLSFPMDELRPGREGDLTPPGTLGDIVLCPEVATQQALTAGHSAIEEM 113 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH + ++ M GL+R +L Sbjct: 114 LLLTTHGILHLLGYDHAEPEEEKEMFGLQRRLL 146 >gi|317404693|gb|EFV85085.1| hypothetical protein HMPREF0005_04068 [Achromobacter xylosoxidans C54] Length = 157 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY 108 V+ + ELSL + LN ++R D TNVL+F + GDIV+ Sbjct: 39 LVEFSAAELSLRLVGAAEGRRLNRDFRQRDYATNVLTFEYGVDPL----GVARGDIVMCV 94 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++ EA K +H HL +HG LH LGYDH+ +DA ME LE + L +GI DPY Sbjct: 95 PVLVREAREQRKALLDHAAHLTLHGVLHSLGYDHIKARDARRMEALETATLARMGIADPY 154 >gi|229824784|ref|ZP_04450853.1| hypothetical protein GCWU000182_00133 [Abiotrophia defectiva ATCC 49176] gi|229791113|gb|EEP27227.1| hypothetical protein GCWU000182_00133 [Abiotrophia defectiva ATCC 49176] Length = 168 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 18/159 (11%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVK--ENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 E + + + + +I K + +E++++ T + I+ N +R ID+PT+ Sbjct: 6 ENEAEREPDFDYEEVIKAVIEKTVETENCPYEIEVNVLLTGNDEIQEANRNFRDIDRPTD 65 Query: 83 VLSFPTAFAS----------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 VLSFP S + L+LGDI+++ + + +A G + Sbjct: 66 VLSFPMVDYSSPSDFSTVNESPECYLNPETDELVLGDIMISVDKVYEQAEEYGHSRKREF 125 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LI H LHLLGYDH++D++ VME + ++LE LGI Sbjct: 126 AFLIAHSMLHLLGYDHMEDEERVVMEAKQEAVLEALGIT 164 >gi|229829053|ref|ZP_04455122.1| hypothetical protein GCWU000342_01138 [Shuttleworthia satelles DSM 14600] gi|229792216|gb|EEP28330.1| hypothetical protein GCWU000342_01138 [Shuttleworthia satelles DSM 14600] Length = 164 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 68/162 (41%), Gaps = 21/162 (12%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + L E V KA+ Y E+S+ D R+ +N EYR I Sbjct: 7 EECGLDLPFDYKKLLETVIRKALD------YERFPFEAEVSVTLVDLDRMHQINREYRQI 60 Query: 78 DKPTNVLSFPTAFASSDGC---------------SSLMLGDIVLAYEIIEIEANVLGKEF 122 D+PT+VLSFP + G +LGDIVL + +A G Sbjct: 61 DRPTDVLSFPFIDYPAPGDFSEIEKTDDFFNPDSGEAVLGDIVLCIPRLVSQAQDYGHST 120 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LI H LHL+GYDH+ D + ME + +L+ LGI Sbjct: 121 RREFAFLIAHSMLHLMGYDHMTDAERIDMERRQSEMLDQLGI 162 >gi|296269140|ref|YP_003651772.1| hypothetical protein Tbis_1157 [Thermobispora bispora DSM 43833] gi|296091927|gb|ADG87879.1| protein of unknown function UPF0054 [Thermobispora bispora DSM 43833] Length = 156 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 17/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DE L L E V + N + ELS++ D + L Sbjct: 1 MSIELANESGVEIDESALVDLAEHVLHRMGIN----------PLAELSILVVDEAAMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + G PT+VL+FP + +LGD+VL ++ +A G + Sbjct: 51 HERWMGEPGPTDVLAFPMDELRPHSTRDEEHPPNPALLGDVVLCPQVAAKQAAEAGHGAQ 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L HG LHLLGYDH + ++ M GL+ +L Sbjct: 111 EELELLCTHGILHLLGYDHAEPEEHAEMFGLQEELLNSW 149 >gi|323340792|ref|ZP_08081044.1| metalloprotease [Lactobacillus ruminis ATCC 25644] gi|323091915|gb|EFZ34535.1| metalloprotease [Lactobacillus ruminis ATCC 25644] Length = 159 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 23/168 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIE 68 +DL+I + +E K + +++ + Y E+S+ D+ I Sbjct: 1 MDLEIYDDTKNVPEEK----------IKLIEDILNFAGSYLKLPENTEMSVTLMDNEHIH 50 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANV 117 +N +YRG+DKPT+V+SF D +GDI+++ + ++ +A Sbjct: 51 EINKKYRGVDKPTDVISFAIEEDDPDEVPIILPEDEEFDIPKNIGDIMVSMDKVKEQAEY 110 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG + L L++HGFLHL GYDH+ ++D M GL+R IL+ G+ Sbjct: 111 LGHSEDRELGFLVVHGFLHLNGYDHMKEEDEKEMFGLQREILDSYGLT 158 >gi|84502866|ref|ZP_01000979.1| hypothetical protein OB2597_14786 [Oceanicola batsensis HTCC2597] gi|84388849|gb|EAQ01719.1| hypothetical protein OB2597_14786 [Oceanicola batsensis HTCC2597] Length = 164 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 16/166 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E+ W L L E +++L + E+SL+ D RI LN Sbjct: 4 IDIIIEDERW-TATDLGPLAEAAATATLAHL-----GLDPGDWEISLLACDDARIAALNG 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLM----------LGDIVLAYEIIEIEANVLGKEF 122 ++RG PTNVLS+P+ +++ + LGDI +A+E + EA G+ Sbjct: 58 DFRGRRAPTNVLSWPSEERAAEAPGQVPTPPDPDGDPELGDIAIAFETCDREAREAGRPM 117 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HLI+H LHLLGYDH D DA +MEG E IL +G+ +PY Sbjct: 118 ADHVTHLIVHATLHLLGYDHESDLDATLMEGSEVEILGKMGLPNPY 163 >gi|254450088|ref|ZP_05063525.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 238] gi|198264494|gb|EDY88764.1| conserved hypothetical protein TIGR00043 [Octadecabacter antarcticus 238] Length = 156 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 73/132 (55%), Gaps = 10/132 (7%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM------ 100 G ++ E+SL+ D RI LN ++R PTNVLS+P+ ++ + Sbjct: 24 GVGLEAAAFEISLLACDDARICVLNADFRQKGTPTNVLSWPSNERGAEADGDMPVQPQLP 83 Query: 101 ----LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LGDI ++Y+ EA G F +H+ HLI+HG LHLLG+DH+ D D +MEGLE Sbjct: 84 QDTELGDIAISYDTCAREAAQSGTPFADHVTHLIVHGTLHLLGFDHLRDLDGALMEGLET 143 Query: 157 SILEDLGINDPY 168 IL L I DPY Sbjct: 144 EILGKLDIADPY 155 >gi|114571574|ref|YP_758254.1| hypothetical protein Mmar10_3035 [Maricaulis maris MCS10] gi|122314893|sp|Q0AK77|RRMF_MARMM RecName: Full=Probable rRNA maturation factor gi|114342036|gb|ABI67316.1| protein of unknown function UPF0054 [Maricaulis maris MCS10] Length = 160 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 11/156 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + VE+ W L E + A L + V ++++ + ++N Sbjct: 4 VDLIVEDDAWSSLAGKTRLVEEAISAACKELPDRTPGV------VAILLGGDEGVASMNA 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++RG TNVLSFP + LGDI LA+ +I+ EA +HL HLIIH Sbjct: 58 QFRGKAGATNVLSFPAGEHAD-----NHLGDIALAHGVIQREAEDRDIALADHLRHLIIH 112 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 GFLHL G+DH D +A VME +ER L LG+ DPY Sbjct: 113 GFLHLQGFDHQQDDEAEVMEAIERRALARLGVADPY 148 >gi|83313564|ref|YP_423828.1| metal-dependent hydrolase [Magnetospirillum magneticum AMB-1] gi|123540295|sp|Q2VYQ6|RRMF_MAGSA RecName: Full=Probable rRNA maturation factor gi|82948405|dbj|BAE53269.1| Predicted metal-dependent hydrolase [Magnetospirillum magneticum AMB-1] Length = 164 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 3/132 (2%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--- 96 ++ + + + +VELS+V D ++ LN ++RG D+PTNVLSF + Sbjct: 30 LAAIALGAVDLPDGVVELSIVLADDATVQGLNRDWRGKDQPTNVLSFASLDDEDAPVVPG 89 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + L+LGD++LA+E EA+ GK +H HL++HG LHLLGYDH+DD++A ME LE Sbjct: 90 APLLLGDVILAFETCAAEAHDQGKTLADHFSHLVVHGVLHLLGYDHMDDEEAAEMEALET 149 Query: 157 SILEDLGINDPY 168 ++L LGI+DPY Sbjct: 150 TLLAALGIDDPY 161 >gi|156744199|ref|YP_001434328.1| hypothetical protein Rcas_4283 [Roseiflexus castenholzii DSM 13941] gi|189040181|sp|A7NRW4|RRMF_ROSCS RecName: Full=Probable rRNA maturation factor gi|156235527|gb|ABU60310.1| protein of unknown function UPF0054 [Roseiflexus castenholzii DSM 13941] Length = 159 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + +AV+ + VE+S++ TD + LN YRG+D PT+VLSF S Sbjct: 23 TLVERAVAQTLRTDDVAGP--VEISILITDDADVHRLNQTYRGVDAPTDVLSFAEDDDHS 80 Query: 94 ---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDAC 149 + LGDI ++++ + +A G E L L++HG LHLLGYDH D Sbjct: 81 FVRPPDAPRYLGDIAISWDRVVAQAAEYGHSRERELAFLVVHGVLHLLGYDHERGPVDEA 140 Query: 150 VMEGLERSILEDLGIN 165 M E +IL LG++ Sbjct: 141 DMRAREEAILGALGLS 156 >gi|229552358|ref|ZP_04441083.1| possible metal-dependent hydrolase [Lactobacillus rhamnosus LMS2-1] gi|258539729|ref|YP_003174228.1| metalloprotease [Lactobacillus rhamnosus Lc 705] gi|229314340|gb|EEN80313.1| possible metal-dependent hydrolase [Lactobacillus rhamnosus LMS2-1] gi|257151405|emb|CAR90377.1| Metalloprotease [Lactobacillus rhamnosus Lc 705] Length = 152 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLG 102 N E+S+ I+ +N EYR D+ T+V+SF D + +G Sbjct: 29 QQLALPNDTEMSITIVGDDAIQKINREYRDTDRATDVISFAIEDGEDDLPLMPGMAKNIG 88 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 D+ + + A G FE L + ++HGFLHL GYDH+ +D VM L++ IL Sbjct: 89 DLFIDPLTVRRHAKEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKILTAY 148 Query: 163 GIN 165 G+ Sbjct: 149 GLT 151 >gi|199599322|ref|ZP_03212720.1| Predicted metal-dependent hydrolase [Lactobacillus rhamnosus HN001] gi|258508548|ref|YP_003171299.1| metalloprotease [Lactobacillus rhamnosus GG] gi|199589761|gb|EDY97869.1| Predicted metal-dependent hydrolase [Lactobacillus rhamnosus HN001] gi|257148475|emb|CAR87448.1| Metalloprotease [Lactobacillus rhamnosus GG] gi|259649855|dbj|BAI42017.1| conserved hypothetical protein [Lactobacillus rhamnosus GG] Length = 152 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLG 102 N E+S+ I+ +N EYR D+ T+V+SF D + +G Sbjct: 29 QQLALPNDTEMSITIVGDDAIQKINREYRDTDRATDVISFAIEDGEDDLPLLPGMAKNIG 88 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 D+ + + A G FE L + ++HGFLHL GYDH+ +D VM L++ IL Sbjct: 89 DLFIDPLTVRRHAKEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKILTAY 148 Query: 163 GIN 165 G+ Sbjct: 149 GLT 151 >gi|187925304|ref|YP_001896946.1| hypothetical protein Bphyt_3331 [Burkholderia phytofirmans PsJN] gi|238689582|sp|B2SYI7|RRMF_BURPP RecName: Full=Probable rRNA maturation factor gi|187716498|gb|ACD17722.1| protein of unknown function UPF0054 [Burkholderia phytofirmans PsJN] Length = 153 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 78/163 (47%), Gaps = 14/163 (8%) Query: 8 LPRLDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 P+L L + A W + L V+ I F EL++ F D+ Sbjct: 4 APKLTLNLQFPAARSWPEHKALLP------RATVAGWIKAALFAD---GELTVRFVDADE 54 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 TLN YRG D TNVL+F A + D + GD++L ++E EA GK H Sbjct: 55 GRTLNRTYRGKDYSTNVLTFAYAESEDDPVT----GDLILCCPVVEKEAAEQGKPLIAHY 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL++HG LH GYDH +++A ME +E IL LG DPY+ Sbjct: 111 AHLLVHGTLHAQGYDHEVEEEAEEMEAIETEILAKLGFPDPYQ 153 >gi|332670852|ref|YP_004453860.1| hypothetical protein Celf_2346 [Cellulomonas fimi ATCC 484] gi|332339890|gb|AEE46473.1| protein of unknown function UPF0054 [Cellulomonas fimi ATCC 484] Length = 150 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ DE L V + ELS++ + + L Sbjct: 1 MSIEVNNESGHDVDEAEFAALARFVLDAMHVH----------PQTELSIMLVGTDVMTDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP + + +LGD+VL E+ +A G L Sbjct: 51 HVKWMDEPGPTDVLSFPMDELRPGREGEPTPAGLLGDVVLCPEVAAQQARAAGHSTAEEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDHV+ ++ M L+R +L Sbjct: 111 LLLTTHGILHLLGYDHVEPEEEKEMFALQRRLL 143 >gi|300866177|ref|ZP_07110895.1| putative metalloprotease Tery_5027 [Oscillatoria sp. PCC 6506] gi|300335833|emb|CBN56055.1| putative metalloprotease Tery_5027 [Oscillatoria sp. PCC 6506] Length = 177 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 25/177 (14%) Query: 11 LDLQIAVENALWGD----------------EIHLRTLCEVVFAKAVSNLISKGYFVKENI 54 ++++++V++ W +IH T E F + L V Sbjct: 1 MEIEVSVQDYFWEANESTSATISPKSIAEGQIHPETW-ETWFQTWLETLSPDIGPVP--S 57 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAY 108 ELSL T ++TLN +YR ++PT+VL+F + L LGDIV++ Sbjct: 58 CELSLRLTGDPEMQTLNSQYRQQNQPTDVLAFAALEVNCPHPQEMVASMPLYLGDIVISV 117 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A L L HGFLHLLG+DH D+ M + +L+ +G+ Sbjct: 118 DTAHRQAQQQHHPLTTELAWLAAHGFLHLLGWDHPDEDSLNSMLNQQEILLKTIGLT 174 >gi|257055401|ref|YP_003133233.1| putative metalloprotease [Saccharomonospora viridis DSM 43017] gi|256585273|gb|ACU96406.1| conserved hypothetical protein TIGR00043 [Saccharomonospora viridis DSM 43017] Length = 183 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + DE + + + + + ELS+V +E L Sbjct: 1 MSIEIANESGIDVDEASIVSAARFALDRMEVS----------PLAELSIVLVTLDVMEDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V++FP + S +LGDIVL + +A G + Sbjct: 51 HERWMDLPGPTDVMAFPMDELEVGRRPDAAEPSPALLGDIVLCPAFAKDQARKAGHSLLD 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + ++ M L+ IL D Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPEEEREMFALQNRILADF 148 >gi|220920279|ref|YP_002495580.1| hypothetical protein Mnod_0233 [Methylobacterium nodulans ORS 2060] gi|219944885|gb|ACL55277.1| protein of unknown function UPF0054 [Methylobacterium nodulans ORS 2060] Length = 159 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 12 DLQIAVENALWGDEI-HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++ + VE+ W + L A++ L G VE+S+V TD ++ L Sbjct: 4 EIDVVVEDERWDRAVPDLGGFVRGAVEAALAVLPPGG------PVEVSVVLTDDAAVQEL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +RG DKPTNVLSFP G LGD+VLAY+ + E+ K +HL HL+ Sbjct: 58 NRTWRGKDKPTNVLSFPAGH--PHGGDLRPLGDVVLAYDTMLRESGEQSKPLGHHLAHLL 115 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSI-LEDLGINDPY 168 +HG LHLLG DH + + L LG+ DPY Sbjct: 116 VHGTLHLLGQDHETGEAEAEAMEALEVVALRRLGVPDPY 154 >gi|260890435|ref|ZP_05901698.1| putative metalloprotease [Leptotrichia hofstadii F0254] gi|260860055|gb|EEX74555.1| putative metalloprotease [Leptotrichia hofstadii F0254] Length = 157 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVE--LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 E + VS ++ Y + + E LSL+ T + +I+ +N EYR D PT+V+SF Sbjct: 21 FDEEKIKEFVSYILKDEYKEEFDKNEYYLSLLITTNAQIQEINHEYRQKDTPTDVISFAY 80 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G + MLGDIV++ E ++ +++ G E +++ HG LHLLGYDH+++KD Sbjct: 81 NETENFGAMN-MLGDIVISIERVKEQSSEYGHSDEREFYYVLCHGMLHLLGYDHIEEKDK 139 Query: 149 CVMEGLERSILEDLGI 164 VM E IL Sbjct: 140 VVMRRREEEILSKFNY 155 >gi|182438796|ref|YP_001826515.1| putative metalloprotease [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779451|ref|ZP_08238716.1| metalloprotease ybeY [Streptomyces cf. griseus XylebKG-1] gi|238689002|sp|B1VY47|RRMF_STRGG RecName: Full=Probable rRNA maturation factor gi|178467312|dbj|BAG21832.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659784|gb|EGE44630.1| metalloprotease ybeY [Streptomyces cf. griseus XylebKG-1] Length = 165 Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 17/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDTDAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEEAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGW 149 >gi|328465884|gb|EGF37067.1| hypothetical protein AAULH_07516 [Lactobacillus helveticus MTCC 5463] Length = 174 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + + DE+ + + L+ +K K+N +E+S+ F D +R +N +YR Sbjct: 5 DVTYHDEVGFLDDKNRDWRDWIMKLLLLAKKEIGKDNNLEMSINFVDEYRSHEINLKYRD 64 Query: 77 IDKPTNVLSFPTAFASS---------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 D+PT+V+SF D +GD+ + +I+ + G F+ Sbjct: 65 KDRPTDVISFAIQDGEDAIDLSAFEDDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFG 124 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + ++HGFLHL GYDH+ +A M G++ +LE+ G+ Sbjct: 125 YTVVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEECGLP 162 >gi|227513293|ref|ZP_03943342.1| metal-dependent hydrolase [Lactobacillus buchneri ATCC 11577] gi|227083494|gb|EEI18806.1| metal-dependent hydrolase [Lactobacillus buchneri ATCC 11577] Length = 161 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 19/167 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E + + +V+ + Y + E+S+ +++ I + Sbjct: 1 MDLEIYDKTEKGISEKDEKLIRDVLN-------FAGSYIHLADNTEMSVTLVNNNEIHKI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM------------LGDIVLAYEIIEIEANVL 118 N EYRG+D+ T+V+SF + D ++ +GDI ++ + + +A+ L Sbjct: 54 NREYRGVDRATDVISFAIEDEAEDDDFPIVMDEDMQESIPENIGDIFVSVDKVAEQADYL 113 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F+ L L++HGFLHL GYDH++ DA +M L++ IL G+ Sbjct: 114 GHSFQRELGFLVVHGFLHLNGYDHMEKADADIMFPLQKEILNAYGLK 160 >gi|297617803|ref|YP_003702962.1| hypothetical protein Slip_1638 [Syntrophothermus lipocalidus DSM 12680] gi|297145640|gb|ADI02397.1| protein of unknown function UPF0054 [Syntrophothermus lipocalidus DSM 12680] Length = 158 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 7/121 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-------SLMLGDI 104 E+SLV D I + N EYRG+D+PT+VLSF +SD +LGDI Sbjct: 36 PPETEVSLVLVDEEEIRSFNREYRGVDRPTDVLSFALNEGTSDEPGYEAPEEMEPVLGDI 95 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +++ E E + G + +L +HG LHLLGYDH D++ M +E +L+D+G+ Sbjct: 96 IISLETAEDQGRDYGHGLAREVAYLAVHGMLHLLGYDHQDEEARTEMRLMEERVLKDVGL 155 Query: 165 N 165 + Sbjct: 156 D 156 >gi|260574095|ref|ZP_05842100.1| protein of unknown function UPF0054 [Rhodobacter sp. SW2] gi|259023561|gb|EEW26852.1| protein of unknown function UPF0054 [Rhodobacter sp. SW2] Length = 168 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 76/165 (46%), Gaps = 19/165 (11%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E+ W D L A A + + L L+ D RI LN +R Sbjct: 10 EDPRWQD------LNLATLADAAAQATLTAVGLDPQGFTLCLMGCDDARIAELNAAFRAK 63 Query: 78 DKPTNVLSFPTAFASSD-------------GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + TNVLS+P+ +++ LGDI +A+E EA GK Sbjct: 64 GQATNVLSWPSEDRAAEVPGGVPELPEPGTADDPEELGDIAIAWETCAREAAEQGKPQVA 123 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 H+ HLI+HG LHLLGYDHVDD DA +ME E IL LGI DPY Sbjct: 124 HVTHLIVHGVLHLLGYDHVDDADAELMETTEAGILAGLGIADPYA 168 >gi|315640635|ref|ZP_07895741.1| metalloprotease [Enterococcus italicus DSM 15952] gi|315483663|gb|EFU74153.1| metalloprotease [Enterococcus italicus DSM 15952] Length = 160 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 17/158 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLI-----SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 EI E V AK + + + + E+S+ F D++ I+ +N YR D Sbjct: 2 EIAFIDENERVTAKKMQEIDDLLQYAASHLDLPEDTEMSITFMDNNEIQEINRVYRNKDM 61 Query: 80 PTNVLSFPTAFASSDGCS------------SLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 PT+V+SF D LGD++++ E +A G + L Sbjct: 62 PTDVISFALEEEGEDELPIIFDEEFDDSQFPRNLGDLMISVERANEQAEEYGHSVDRELG 121 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLHL GYDH+ +D VM GL++ IL+ G+ Sbjct: 122 FLALHGFLHLNGYDHMTPEDEKVMFGLQKEILDAYGLK 159 >gi|21220993|ref|NP_626772.1| putative metalloprotease [Streptomyces coelicolor A3(2)] gi|256787845|ref|ZP_05526276.1| putative metalloprotease [Streptomyces lividans TK24] gi|289771730|ref|ZP_06531108.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|26006934|sp|Q9L2L4|RRMF_STRCO RecName: Full=Probable rRNA maturation factor gi|6723881|emb|CAB66427.1| conserved hypothetical protein SCC117.06 [Streptomyces coelicolor A3(2)] gi|289701929|gb|EFD69358.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 165 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDAEAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDEEEAPQGLLGDIVLCPEVAAKQGAEAPTEHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRAEKGLTGP 158 >gi|302545480|ref|ZP_07297822.1| putative metalloprotease [Streptomyces hygroscopicus ATCC 53653] gi|302463098|gb|EFL26191.1| putative metalloprotease [Streptomyces himastatinicus ATCC 53653] Length = 165 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELSL+ D+ +E L Sbjct: 1 MAIDVNNESGTDIDERAILDVARYALARMRIHPLS----------ELSLIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP D +LGDIVL ++ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPVKDDDEPPQGLLGDIVLCPDVAKKQGEEAPTGHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL----EDLGINDP 167 L L +HG LHLLGYDH + + M GL+ +I+ + G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDERAEMFGLQAAIIDGWRAEYGLTGP 158 >gi|163814101|ref|ZP_02205493.1| hypothetical protein COPEUT_00254 [Coprococcus eutactus ATCC 27759] gi|158450550|gb|EDP27545.1| hypothetical protein COPEUT_00254 [Coprococcus eutactus ATCC 27759] Length = 170 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 21/173 (12%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + +EN EI E V + + + + + E++++ TD+ I +N Sbjct: 1 MSVNIENEYGDIEI---KNYETVINEIIQASLD--FLKCPYVCEVNVLLTDNDSIHEINN 55 Query: 73 EYRGIDKPTNVLSFPTAFASSDG----------------CSSLMLGDIVLAYEIIEIEAN 116 + R ID+ T+VLSFP + G L+LGDIV++ + + +A Sbjct: 56 QQRNIDRATDVLSFPLIDYTIPGNFDGLEDSRCDNFDLTTGELLLGDIVISIDKVYEQAA 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L L+ H LHL GYDH+++ + VME ++ IL G YE Sbjct: 116 EYNHSKTRELAFLVAHSMLHLSGYDHMEEDERKVMEDMQEKILTTKGYTRDYE 168 >gi|302670671|ref|YP_003830631.1| hypothetical protein bpr_I1311 [Butyrivibrio proteoclasticus B316] gi|302395144|gb|ADL34049.1| hypothetical protein bpr_I1311 [Butyrivibrio proteoclasticus B316] Length = 167 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 17/131 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----------- 100 VE+SL TD I +N E+R ID PT+VLSFP G S++ Sbjct: 35 PYEVEISLTITDDEGIREINNEFRQIDSPTDVLSFPNVSYDEPGDFSVIDGEQKVDLLNP 94 Query: 101 ------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 GDIV+ + +A G + L+ H LHL GYDH+++++A VMEG Sbjct: 95 DTGNISFGDIVINVNRVRSQALEYGHSEKREFAFLVAHSMLHLCGYDHMEEQEAAVMEGK 154 Query: 155 ERSILEDLGIN 165 + IL LGI Sbjct: 155 QNDILTYLGIT 165 >gi|33866843|ref|NP_898402.1| hypothetical protein SYNW2313 [Synechococcus sp. WH 8102] gi|46577382|sp|Q7U3W4|RRMF_SYNPX RecName: Full=Probable rRNA maturation factor gi|33639444|emb|CAE08828.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 185 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 16/177 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAK-----------AVSNLISKGYFVKENIVELSL 59 ++L +A++ A +L E + A +L + + V L L Sbjct: 1 MELDLALDAAGPWSPEDPSSLIETQTWQITLVDWIQTICADPSLPCPALVCQADEVSLGL 60 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANV 117 FTD I LN +R ++ T+VLSF + S + LGDIV++ + +A+ Sbjct: 61 RFTDDATITALNSTWRQRNQATDVLSFAALEEAPGLPDVSCVELGDIVISLDTARRQASE 120 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE---DLGINDPYEVD 171 G L L+ HG LHLLG+DH D++ M L+ +L+ ++ I DP+ VD Sbjct: 121 HGHNLTRELRWLVSHGLLHLLGWDHPDEESLVAMLQLQEQLLDGGSNVRIRDPHSVD 177 >gi|227510286|ref|ZP_03940335.1| metal-dependent hydrolase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189938|gb|EEI70005.1| metal-dependent hydrolase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 161 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E + + +V+ + Y + E+S+ ++ I + Sbjct: 1 MDLEIYDKTEKGISEKDEKMIRDVLN-------FAGSYIHLADNTEMSVTLVNNDEIHKI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM------------LGDIVLAYEIIEIEANVL 118 N EYRG+D+ T+V+SF + D ++ +GDI ++ + + +A+ L Sbjct: 54 NREYRGVDRATDVISFAIEDEAEDDDFPIVMDEDMQESIPENIGDIFVSVDKVAEQADYL 113 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F+ L L++HGFLHL GYDH++ DA +M L++ IL G+ Sbjct: 114 GHSFQRELGFLVVHGFLHLNGYDHMEKADADIMFPLQKEILNAYGLK 160 >gi|332981673|ref|YP_004463114.1| hypothetical protein Mahau_1094 [Mahella australiensis 50-1 BON] gi|332699351|gb|AEE96292.1| protein of unknown function UPF0054 [Mahella australiensis 50-1 BON] Length = 161 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 18/165 (10%) Query: 13 LQIAVENALWGDEI--HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + I +++ EI + L E V +++ E +E+S++ D+ +I+ L Sbjct: 1 MNILIDDRQSVMEIRDDVYDLLEQVVKRSIE------LEGLEPDIEVSIILIDNEQIKEL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS----------LMLGDIVLAYEIIEIEANVLGK 120 N ++RGID+ T+VLSFP SD L+LGDI ++ E +A G Sbjct: 55 NRDFRGIDRETDVLSFPAIDYESDEGEPVEDINMDTGDLILGDIAISVEKAAQQAEEYGH 114 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + L +HG HLLGYDH D+++A +M E +L LG+ Sbjct: 115 SFYREMGFLTVHGMFHLLGYDHEDEEEATIMRQREEMVLSSLGLE 159 >gi|15606551|ref|NP_213931.1| hypothetical protein aq_1354 [Aquifex aeolicus VF5] gi|6686198|sp|O67367|RRMF_AQUAE RecName: Full=Probable rRNA maturation factor gi|37927359|pdb|1OZ9|A Chain A, Crystal Structure Of Aq_1354, A Hypothetical Protein From Aquifex Aeolicus gi|2983779|gb|AAC07338.1| hypothetical protein aq_1354 [Aquifex aeolicus VF5] Length = 150 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 4/111 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 N VELS+ TD I LN YR DKPT+VLSFP + +LGD+V++ + E Sbjct: 39 NNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPMG---EEFGGYKILGDVVISQDTAE 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDL 162 +A LG E + LI+HG +HLLGYDH ++ LE +L L Sbjct: 96 RQARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFRELENYVLSKL 146 >gi|238927459|ref|ZP_04659219.1| metal-dependent hydrolase [Selenomonas flueggei ATCC 43531] gi|238884741|gb|EEQ48379.1| metal-dependent hydrolase [Selenomonas flueggei ATCC 43531] Length = 153 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 9/157 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++IA+ D + + +AV ++ G E+S+ T+ I LN Sbjct: 1 MEIAI--GKEPDTLEVPQEDVDAVRRAV---LTVGRLYGALDAEVSVTLTNDAHIHVLNR 55 Query: 73 EYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +YRG+D+PT+VLSF + D ++LGD+V++ E +A G F L Sbjct: 56 DYRGVDRPTDVLSFALTESEEPEIIDAPCGVVLGDLVISLERAAAQAEEYGHSFLRELSF 115 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HG LHLLGYDH+++++ ME +R +++ LGI Sbjct: 116 LTVHGMLHLLGYDHIEEEERLEMEEEQRHVMDALGIA 152 >gi|254411860|ref|ZP_05025636.1| conserved hypothetical protein TIGR00043, putative [Microcoleus chthonoplastes PCC 7420] gi|196181582|gb|EDX76570.1| conserved hypothetical protein TIGR00043, putative [Microcoleus chthonoplastes PCC 7420] Length = 169 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 9/143 (6%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F++ + L + EL+L TD I+ LN ++R ++PT+VLSF Sbjct: 28 WEHWFSQWLETLHPDNPPAPTH--ELTLRLTDDAEIQALNSQFRHKNQPTDVLSFAALEV 85 Query: 92 SSDGCSSLM-------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 S M LGD+V++ E +A G L L HG LHLLG+DH D Sbjct: 86 DSPQIPPDMQAAESVYLGDLVISVETAYRQAQHQGHPLSIELAWLATHGLLHLLGWDHPD 145 Query: 145 DKDACVMEGLERSILEDLGINDP 167 ++ M ++++L+ + + P Sbjct: 146 EESLQRMLNQQQALLQIVNLTLP 168 >gi|117927998|ref|YP_872549.1| putative metalloprotease [Acidothermus cellulolyticus 11B] gi|145558839|sp|A0LT03|RRMF_ACIC1 RecName: Full=Probable rRNA maturation factor gi|117648461|gb|ABK52563.1| protein of unknown function UPF0054 [Acidothermus cellulolyticus 11B] Length = 164 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 18/160 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + DE+ L L V + + ELS++ D + L Sbjct: 1 MTVEIANESGVDVDELRLLDLARYVLDRM----------RIHPLAELSILLVDEGEMAVL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF--------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 + + PT+VLSFP +LGD+VL + + +A G Sbjct: 51 HERWMDEPGPTDVLSFPMDELRPGRLDVEIDPDAEPAVLGDVVLCPAVAKQQARHAGHST 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++ L L +HG LHLLGYDH ++ M L+ +L Sbjct: 111 QDELELLTVHGILHLLGYDHAEEDAEREMFALQSELLTAW 150 >gi|310659081|ref|YP_003936802.1| yqfg [Clostridium sticklandii DSM 519] gi|308825859|emb|CBH21897.1| YqfG [Clostridium sticklandii] Length = 157 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 14/161 (8%) Query: 13 LQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 LQ+ EN + + L + E V K++ VE+SL FT I+ +N Sbjct: 2 LQLLFENDSNYIPANDLLKMLESVMLKSLE------LEGVAKEVEISLTFTTDELIKEIN 55 Query: 72 FEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 ++R IDK T+VLSFP + LGDIV++ E +A G FE Sbjct: 56 SKHRNIDKATDVLSFPMYEKQELSDINTSISNFPVALGDIVVSVERTFSQAEEYGHSFER 115 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L+ H HLLGYDH+ ++ +M + +LE LGIN Sbjct: 116 EMAFLVCHSMFHLLGYDHMTKQEEGLMMEKQNKVLEALGIN 156 >gi|256396155|ref|YP_003117719.1| hypothetical protein Caci_7048 [Catenulispora acidiphila DSM 44928] gi|256362381|gb|ACU75878.1| protein of unknown function UPF0054 [Catenulispora acidiphila DSM 44928] Length = 159 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 12/158 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + IA E +G E + V A+ V G + ELS++ D+ +E L Sbjct: 1 MSIDIANETD-YGTEQGVDAEELVGVARYV-----LGEMGIHPMAELSILLVDTAAMEQL 54 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ PT+VLSFP + +LGD+VL E+ E + G Sbjct: 55 HIQWMDEPGPTDVLSFPMDELRPARAEDDNEPVPGLLGDVVLCPEVAERQGKDAGHSTAE 114 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L HG LHLLGYDH + ++ M GL++ +L Sbjct: 115 ELRLLTTHGILHLLGYDHAEPEEEAEMFGLQKQLLRGW 152 >gi|311895962|dbj|BAJ28370.1| putative metallopeptidase [Kitasatospora setae KM-6054] Length = 164 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + IA E+ DE + + K ELS++ DS + L Sbjct: 1 MSIDIANESGWDVDEESILDVARYALDKM----------RIHPQSELSVILYDSESMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIE--ANVLGKEFEN 124 + ++ + PT+V+SFP + +LGDIVL E+ + + A + Sbjct: 51 HVQWMDLPGPTDVMSFPMDELRPGKEGEDLPEGLLGDIVLCPEVAKEQGLAAPTKHSMDE 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LH+LGYDH + + M L++ IL+D Sbjct: 111 ELQLLTVHGVLHVLGYDHEEPDEEREMFALQKRILDDW 148 >gi|34763927|ref|ZP_00144826.1| Hypothetical Metal-Binding Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886298|gb|EAA23575.1| Hypothetical Metal-Binding Protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 162 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 1/127 (0%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + ++ + + LSL+ TD+ I+ +N EYR + PT+V+SF Sbjct: 33 IKKVLELEEVESDRPLYLSLLLTDNENIQVINREYRDKNAPTDVISFAYHETEDFNIGPY 92 Query: 100 M-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LGDI+++ E +E +A FE +++ HG LH+LGYDH+++ D +M E +I Sbjct: 93 DTLGDIIISLERVEEQATEYNHLFEREFYYVLTHGILHILGYDHIEEDDKKLMREREEAI 152 Query: 159 LEDLGIN 165 L G Sbjct: 153 LSSFGYT 159 >gi|227524437|ref|ZP_03954486.1| metal-dependent hydrolase [Lactobacillus hilgardii ATCC 8290] gi|227088396|gb|EEI23708.1| metal-dependent hydrolase [Lactobacillus hilgardii ATCC 8290] Length = 161 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 19/167 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E + + +V+ + Y + E+S+ +++ I + Sbjct: 1 MDLEIYDKTEKGISEKDEKLIRDVLN-------FAGSYIHLADNTEMSVTLVNNNEIHKI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM------------LGDIVLAYEIIEIEANVL 118 N EYRG+D+ T+V+SF + D ++ +GDI ++ + + +A+ L Sbjct: 54 NREYRGVDRATDVISFAIEDEAEDDDFPIVMDEDMQESIPENIGDIFVSVDKVAEQADYL 113 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G F+ L L++HGFLHL GYDH++ DA +M L+ IL G+ Sbjct: 114 GHSFQRELGFLVVHGFLHLNGYDHMEKADADIMFPLQEEILNAYGLK 160 >gi|290960550|ref|YP_003491732.1| hypothetical protein SCAB_61701 [Streptomyces scabiei 87.22] gi|260650076|emb|CBG73192.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 165 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 17/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + + + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALTRMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVL--GKEFE 123 + ++ + PT+V+SFP D +LGDIVL E+ E + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPSKDDDEPPQGLLGDIVLCPEVAEKQGKDADTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGW 149 >gi|157826181|ref|YP_001493901.1| putative metalloprotease [Rickettsia akari str. Hartford] gi|166229073|sp|A8GPR8|RRMF_RICAH RecName: Full=Probable rRNA maturation factor gi|157800139|gb|ABV75393.1| hypothetical protein A1C_05790 [Rickettsia akari str. Hartford] Length = 167 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 14/170 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIE 68 ++++I W + + + + + K N++ + F K ELS++ T++ I Sbjct: 1 MINVEIIKNYDKWREH---KQINKSLIQKITQNILLRFNNFSKIKQFELSMLLTNTAEIL 57 Query: 69 TLNFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 TLN ++R I+K TNVL+FP+ + LGD+ YE+I E+ Sbjct: 58 TLNKQFRNIEKATNVLAFPSNELNWQDLYSKLEFLGDSDYMHLGDVAFCYEVIYNESCEQ 117 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K FENH +HL+IH LHL+G+DH +D +A +ME LE IL GI+ PY Sbjct: 118 QKTFENHFIHLLIHSILHLIGFDHQNDTEAHIMENLEIEILSYFGISSPY 167 >gi|289642692|ref|ZP_06474832.1| protein of unknown function UPF0054 [Frankia symbiont of Datisca glomerata] gi|289507522|gb|EFD28481.1| protein of unknown function UPF0054 [Frankia symbiont of Datisca glomerata] Length = 158 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 17/155 (10%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 +A E+ + DE+ L L V N + ELS++ + +E L+ Y Sbjct: 5 VANESGVEADEVTLTALARFVLDTMKVN----------PLAELSVMLVEQAAMEELHVRY 54 Query: 75 RGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 G + PT+VL+FP S + +L+LGDIVL E+ +A G E+ + Sbjct: 55 MGEEGPTDVLAFPQDDAFDPSAPDSGEDDPTLLLGDIVLCPEVARRQAAKAGHSTEHEMH 114 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L HG LHLLGYDH + + M ++ +L Sbjct: 115 LLCTHGILHLLGYDHAEPDEEREMWAVQSRLLTSW 149 >gi|220928028|ref|YP_002504937.1| hypothetical protein Ccel_0576 [Clostridium cellulolyticum H10] gi|219998356|gb|ACL74957.1| protein of unknown function UPF0054 [Clostridium cellulolyticum H10] Length = 161 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +EN +++ + E + K + + + E++++ D I +N E+ Sbjct: 2 IIIENEQ--NKVIVDKKIESLIEKTIK--LCMKSEKLDKDYEVNVLIVDDEEIRGINKEH 57 Query: 75 RGIDKPTNVLSFPT-----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 R DK T+VLSFP L+LGDI+++ E + +A G FE Sbjct: 58 RDTDKSTDVLSFPMVNFKDGKLISDEGDYDLEMGELILGDIIISAETAQRQAEAYGHSFE 117 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L H HLLGYDH++ + +M + IL ++G+ Sbjct: 118 REMAFLTAHSCFHLLGYDHMEKNEEEIMFKKQEDILIEIGLP 159 >gi|227498625|ref|ZP_03928769.1| cytidine deaminase [Acidaminococcus sp. D21] gi|226904081|gb|EEH89999.1| cytidine deaminase [Acidaminococcus sp. D21] Length = 160 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 7/147 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +++ + E KA++ + + E+ + D I LN YRGID+PT+V Sbjct: 10 EKVSIPEALEADLTKAMNVVAELEALSPQ--TEVDITLVDDAAIHELNRTYRGIDRPTDV 67 Query: 84 LSFPTAFASSDGCSSL-----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 LSF + +LGD++++ + G E + +L +HG LHLL Sbjct: 68 LSFALDEGEEEPEVDDDEIEHLLGDVIISAPTAVRQGEEYGHGLEREMTYLAVHGMLHLL 127 Query: 139 GYDHVDDKDACVMEGLERSILEDLGIN 165 GYDH+++KD +M E +L L + Sbjct: 128 GYDHMEEKDKLIMRKREEEVLRRLDLA 154 >gi|239979364|ref|ZP_04701888.1| putative metalloprotease [Streptomyces albus J1074] gi|291451239|ref|ZP_06590629.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354188|gb|EFE81090.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 165 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D +E L Sbjct: 1 MSIDVNNESGTEVDERAILDIARYALARMRIHPLS----------ELSVIVVDPEAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL ++ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPVKDEEEPPQGLLGDIVLCPDVARQQGQDAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+++I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPGEKAEMFGLQQAIVDGWREENGLTGP 158 >gi|291459261|ref|ZP_06598651.1| putative metalloprotease [Oribacterium sp. oral taxon 078 str. F0262] gi|291418515|gb|EFE92234.1| putative metalloprotease [Oribacterium sp. oral taxon 078 str. F0262] Length = 165 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 70/162 (43%), Gaps = 18/162 (11%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + E L E + + +I Y E+S++FTD+ I +N + RGID Sbjct: 4 NLDFETEKRLELPLEEIITEICGAVI--AYEHCPFSCEISVLFTDNEGIRAINRDSRGID 61 Query: 79 KPTNVLSFPTAFASSDG----------------CSSLMLGDIVLAYEIIEIEANVLGKEF 122 PT+VLSFP A G LGDIVL + IE +A G Sbjct: 62 APTDVLSFPMAEYKRPGDFSIFREGDPELFNPDTGDFFLGDIVLNLDRIESQAREYGHSE 121 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L H LHL GYDH+ + + ME +R ILE G Sbjct: 122 RRELAFLTAHSMLHLFGYDHMAEGERSEMERRQREILEGKGY 163 >gi|257126606|ref|YP_003164720.1| hypothetical protein Lebu_1864 [Leptotrichia buccalis C-1013-b] gi|257050545|gb|ACV39729.1| protein of unknown function UPF0054 [Leptotrichia buccalis C-1013-b] Length = 153 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVE--LSLVFTDSHRI 67 LD+ I + E E + V ++ Y + + E LSL+ T + +I Sbjct: 1 MLDIDIT-----YDIEKIDNFFDEEKIKEFVGYILKDEYKEEFDKNEYYLSLLITTNEQI 55 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + +N EYR D PT+V+SF + G + MLGDIV++ E ++ +++ G E Sbjct: 56 QEINCEYRQKDAPTDVISFAYNETENFGAVN-MLGDIVISIERVKEQSSEYGHSDEREFY 114 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +++ HG LHLLGYDH++++D VM E IL Sbjct: 115 YVLCHGMLHLLGYDHIEEQDKVVMRKREEEILSKFNYK 152 >gi|293376336|ref|ZP_06622573.1| metalloprotein, YbeY family [Turicibacter sanguinis PC909] gi|325843425|ref|ZP_08167983.1| translation metalloprotein YbeY [Turicibacter sp. HGF1] gi|292645025|gb|EFF63098.1| metalloprotein, YbeY family [Turicibacter sanguinis PC909] gi|325489347|gb|EGC91721.1| translation metalloprotein YbeY [Turicibacter sp. HGF1] Length = 157 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 7/156 (4%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 +AV+ + E + + V + + E +E S +F D+ +I +N Y Sbjct: 1 MAVDIQFYNQTDEAVERYEQMIERVVVETLKQENLAHE-FIECSFIFVDNEQIREINANY 59 Query: 75 RGIDKPTNVLSFPTAFASSDGC------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 R D T+V++F + MLGD+ ++ +A G F+ L Sbjct: 60 RQKDAVTDVITFAIEDETPGEIKIQGVPMPRMLGDVFISLPRTREQAERFGHSFDRELSF 119 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L +HG LHLLGYDH+ ++ +M + +L LGI Sbjct: 120 LAVHGCLHLLGYDHLVKEEEEIMFAKQEDVLNALGI 155 >gi|255262455|ref|ZP_05341797.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255104790|gb|EET47464.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 163 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 20/170 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ +++A W + L ++ + + ++ +S++ D RI+ LN Sbjct: 2 IEVQIDDARW---VGFEALASRA-----ADAVFDAVGLDRDVWLVSVLACDDARIQVLNA 53 Query: 73 EYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 ++R D TNVLS+P D LGD+ ++++ EA Sbjct: 54 DFREKDGATNVLSWPAQDLAAVGAGDKPDAPVPDPMGESELGDVAISFDTCAREAAEAAC 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 +F++H+ HL+IHG LHLLGYDH+ D DA +ME LE IL LG+ DPY V Sbjct: 114 DFDDHVAHLMIHGTLHLLGYDHIRDADATLMETLEVQILGKLGLCDPYTV 163 >gi|302391406|ref|YP_003827226.1| hypothetical protein Acear_0619 [Acetohalobium arabaticum DSM 5501] gi|302203483|gb|ADL12161.1| protein of unknown function UPF0054 [Acetohalobium arabaticum DSM 5501] Length = 141 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 8/110 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S+ D+ I+ LN EYRG+D+PT+VLSFP MLGDI+++ E E +A Sbjct: 39 EVSIALVDNEYIKELNAEYRGLDEPTDVLSFPLGEE--------MLGDIIISLERAESQA 90 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + + L +HG LHLLGYDH +++ M E +L L + Sbjct: 91 EEYNHSLDREMGFLTVHGMLHLLGYDHKEEEAKEEMRNREEKVLNKLDLE 140 >gi|160947548|ref|ZP_02094715.1| hypothetical protein PEPMIC_01483 [Parvimonas micra ATCC 33270] gi|158446682|gb|EDP23677.1| hypothetical protein PEPMIC_01483 [Parvimonas micra ATCC 33270] Length = 156 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 2/144 (1%) Query: 19 NALWGDEIHLRTLCEVVFAKAVS--NLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 N + D + + + + K + K + + +E+S+ F + I+ +N +R Sbjct: 2 NVFFDDRQDIFVISDTLKKKIIKCIETALKVENKRMSNIEVSVSFVTNEEIKNINSRFRN 61 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 IDK T+VLSFP F S+ +LGDI+++ E +A G + +++L+ H H Sbjct: 62 IDKETDVLSFPMDFEFSEEGMPFILGDIIISTEKSIEQAQEFGHSIDREILYLVCHSVFH 121 Query: 137 LLGYDHVDDKDACVMEGLERSILE 160 LLGYDH+++ D +M E+ ++ Sbjct: 122 LLGYDHIEESDRIIMRNKEKETMK 145 >gi|302528837|ref|ZP_07281179.1| metal-dependent hydrolase [Streptomyces sp. AA4] gi|302437732|gb|EFL09548.1| metal-dependent hydrolase [Streptomyces sp. AA4] Length = 183 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + DE + + K + + ELS++ +E L Sbjct: 1 MSIEIANESGVDVDEASIVSAARYTLEKMEVS----------PLAELSILCVTLEVMEDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V++FP + S +LGDIVL + +A G + Sbjct: 51 HERWMDLPGPTDVMAFPMDELDSSRRPDAPDSSPALLGDIVLCPAFAKDQAKTAGHRLID 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M GL++ IL + Sbjct: 111 ELHLLTVHGCLHLLGYDHAEPAEEREMFGLQKRILGEF 148 >gi|320010900|gb|ADW05750.1| protein of unknown function UPF0054 [Streptomyces flavogriseus ATCC 33331] Length = 165 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDTAAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEAN--VLGKEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEDAETQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAAMFGLQAAIVDGWRGERGLTGP 158 >gi|282882469|ref|ZP_06291090.1| putative metalloprotease [Peptoniphilus lacrimalis 315-B] gi|281297611|gb|EFA90086.1| putative metalloprotease [Peptoniphilus lacrimalis 315-B] Length = 146 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 3/108 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+ F D + I+ LN +YR +DK T+VLSFP D +LGDIV+ + +A Sbjct: 40 VSVSFVDDNEIKNLNRDYRNVDKVTDVLSFPMDEEYEDKI---ILGDIVINMARVLSQAK 96 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G L +L +H LHLLGYDH++++D +M E+ I++ L I Sbjct: 97 EFGHSNRRELSYLCVHSTLHLLGYDHIEEEDRIIMRAKEKEIMDKLKI 144 >gi|210612672|ref|ZP_03289420.1| hypothetical protein CLONEX_01622 [Clostridium nexile DSM 1787] gi|210151474|gb|EEA82482.1| hypothetical protein CLONEX_01622 [Clostridium nexile DSM 1787] Length = 164 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 17/154 (11%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L CE + K + + Y E++L+ T + I+ +N +RGID+ T+VLS Sbjct: 11 LKLSLPCEELAVKVIEMALD--YAKCPYEAEVNLLLTMNDEIQEMNRNFRGIDRATDVLS 68 Query: 86 FPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 FP + LMLGDIV++ E + +A G E LI Sbjct: 69 FPMVDYETAGSFSFLEDALEYFNPESGELMLGDIVISKEKVVSQAEEYGHSIEREYAFLI 128 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H LHL G+DH+++++ VME + ILE L I Sbjct: 129 AHSMLHLFGFDHMEEEERAVMERKQAEILERLQI 162 >gi|300813825|ref|ZP_07094130.1| translation metalloprotein YbeY [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512012|gb|EFK39207.1| translation metalloprotein YbeY [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 146 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 3/113 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + +S+ F D + I+ LN +YR +DK T+VLSFP D +LGDIV+ + Sbjct: 35 DKEYYVSVSFVDDNEIKNLNRDYRNVDKVTDVLSFPMDEEYEDKI---ILGDIVINMARV 91 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A G L +L +H LHLLGYDH++++D +M E+ I++ L I Sbjct: 92 LSQAKEFGHSNRRELSYLCVHSTLHLLGYDHIEEEDRIIMRAKEKEIMDKLKI 144 >gi|294012045|ref|YP_003545505.1| putative metal-dependent hydrolase [Sphingobium japonicum UT26S] gi|292675375|dbj|BAI96893.1| putative metal-dependent hydrolase [Sphingobium japonicum UT26S] Length = 166 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 83/162 (51%), Gaps = 6/162 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++AV + + L + A+++ + E + E+++ T + LN Sbjct: 2 IEVAVLHEQGWPDTDWELLAQRAVVAAITHSPYAAFAADEALYEVAVKLTTDEEVHQLNR 61 Query: 73 EYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 YR DKPTNVLSFP ++ ++LGDIVLA + EA G +H Sbjct: 62 AYRDKDKPTNVLSFPMVQSDLLETTANTDDGEVLLGDIVLAEGVCAREAAEKGVSVADHA 121 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HLI+HG HLLGYDH++D +A ME LE L LGI+DPY Sbjct: 122 THLIVHGTFHLLGYDHMEDAEAEAMEALETQSLISLGISDPY 163 >gi|88811724|ref|ZP_01126978.1| hypothetical protein NB231_04945 [Nitrococcus mobilis Nb-231] gi|88791115|gb|EAR22228.1| hypothetical protein NB231_04945 [Nitrococcus mobilis Nb-231] Length = 154 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 14/161 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQ+A N + ++ + E+++ D Sbjct: 3 EIDLQLASCNPDVPELEQFERW------------VAAALAGARDAAEIAIRIVDEEEGRE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D TN+L+FP +G +++LGD+V+ ++ EA+ K H HL Sbjct: 51 LNAIYRGYDYATNILAFPAEL--PEGVEAVLLGDLVICAPLVAREADEQDKRLAAHWAHL 108 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 ++HG LHLLGYDH ++ A VME ER IL LG DPY Sbjct: 109 VVHGVLHLLGYDHEEEAAAAVMEAQERVILAKLGYPDPYAD 149 >gi|332638285|ref|ZP_08417148.1| metal-dependent hydrolase [Weissella cibaria KACC 11862] Length = 160 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 18/166 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL I ++ + G L E V + Y + E+S+ F ++ I+ Sbjct: 1 MDLAI-IDQSKPGVPAEQIELVEKVLD------YAGKYMKLPDDTEMSVTFVNNDEIQRY 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL----------MLGDIVLAYEIIEIEANVLGK 120 N EYRG+DKPT+V+SF D + +GDI+++ + I +A L Sbjct: 54 NREYRGLDKPTDVISFAIEEDGDDMPLMMDEDMAEDLAKNIGDIIVSVDKIGEQAEYLEH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 +E L L++HGFLHL GYDH+ D+D +M L+R IL+ G+ Sbjct: 114 SYERELGFLVVHGFLHLNGYDHMRSDEDEKIMFDLQREILDSYGLT 159 >gi|254382694|ref|ZP_04998051.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194341596|gb|EDX22562.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 165 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ + DE + + + + +S ELS++ D +E L Sbjct: 1 MSIDVNNESGIEVDEQAILDIARYALTRMRIHPLS----------ELSVIVVDEGAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEDAPTQHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ GI P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRGERGITGP 158 >gi|295094824|emb|CBK83915.1| conserved hypothetical protein TIGR00043 [Coprococcus sp. ART55/1] Length = 170 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 16/144 (11%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------- 95 S + E++++ TD+ I +N + R ID+ T+VLSFP + G Sbjct: 27 ASLEFVGCPYPCEVNVLLTDNDSIHEINNQQRNIDRATDVLSFPLIDYTIPGNFDGLEDS 86 Query: 96 --------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 L+LGDIV++ + + +A L L+ H LHL GYDH++D + Sbjct: 87 RCDYFDLTTDELLLGDIVISIDKVYEQATEYNHSKTRELAFLVAHSMLHLSGYDHMEDDE 146 Query: 148 ACVMEGLERSILEDLGINDPYEVD 171 VME ++ IL G YE + Sbjct: 147 RRVMEEMQEKILTMKGYTRDYEEN 170 >gi|302380695|ref|ZP_07269160.1| translation metalloprotein YbeY [Finegoldia magna ACS-171-V-Col3] gi|303233630|ref|ZP_07320284.1| translation metalloprotein YbeY [Finegoldia magna BVS033A4] gi|302311638|gb|EFK93654.1| translation metalloprotein YbeY [Finegoldia magna ACS-171-V-Col3] gi|302495064|gb|EFL54816.1| translation metalloprotein YbeY [Finegoldia magna BVS033A4] Length = 153 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 + ++ E+SL F I LN +YR D T+VLSFP + +LGDI++ + Sbjct: 34 LNDDNYEISLSFVSEAEIRKLNRDYRDKDSVTDVLSFP--LDDDFAIQTNLLGDIIICCK 91 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 +A + +V+L++H HLLGYDH+D+ D +M E+ L+++GI Y+ Sbjct: 92 RAIEQAKEYNHSIKREIVYLVVHSMFHLLGYDHIDESDRIIMRNKEKLALKEIGI---YK 148 Query: 170 VD 171 + Sbjct: 149 DE 150 >gi|296137315|ref|YP_003644557.1| protein of unknown function UPF0054 [Thiomonas intermedia K12] gi|295797437|gb|ADG32227.1| protein of unknown function UPF0054 [Thiomonas intermedia K12] Length = 175 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 11/166 (6%) Query: 9 PRLDLQIAVENALWGDEIH---LRTLCEVVFAKAVSNLISKGYFVKENIV-ELSLVFTDS 64 P L L + + D++ L + +L + +++L F + Sbjct: 10 PALRLSVQFADTTHRDQLPRALLLRWVRAALRVGLESLDALPQAGASPEAHQITLRFVAA 69 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D TNVL+F D + DIVL ++ EA K + Sbjct: 70 DEGRALNRAYRGKDYATNVLTF-------DYSHWPVQADIVLCCPVVAGEALAQHKPLGS 122 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 H HL+IHG LH G+DH + +A ME E ++L+ GI+DPY Sbjct: 123 HYAHLVIHGLLHAQGWDHQTELEAQEMERHEVTVLQRFGISDPYAD 168 >gi|325963343|ref|YP_004241249.1| hypothetical protein Asphe3_19600 [Arthrobacter phenanthrenivorans Sphe3] gi|323469430|gb|ADX73115.1| conserved hypothetical protein TIGR00043 [Arthrobacter phenanthrenivorans Sphe3] Length = 157 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L L +F + + ELS++ D +E L Sbjct: 1 MSIEVNNESGVQVDEAELVMLSRYIFEQLFIH----------PQAELSILLVDEPAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + E T+VLS P MLGDI + ++ +++A G ++ + Sbjct: 51 HIELMDEPGSTDVLSVPMDELTPGTPDRPTPQGMLGDIAICPQVAQMQAKNAGHTLQDEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH + ++ M GL+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEPEEKAEMFGLQRELLSGF 146 >gi|116670778|ref|YP_831711.1| putative metalloprotease [Arthrobacter sp. FB24] gi|145572771|sp|A0JX41|RRMF_ARTS2 RecName: Full=Probable rRNA maturation factor gi|116610887|gb|ABK03611.1| protein of unknown function UPF0054 [Arthrobacter sp. FB24] Length = 157 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L L VF + ELS++ D +E L Sbjct: 1 MSIEVNNESGVTVDEAQLVALARFVFER----------LYIHPQAELSILLVDEPAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + E T+VLS P MLGDI + ++ E++A G ++ + Sbjct: 51 HLELMDEPGATDVLSVPMDELTPGTPDKPTPQGMLGDIAVCPQVAEVQARNAGHSTQDEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH D ++ M GL+R +LE Sbjct: 111 LLLTTHGILHLLGYDHADPEEKEEMFGLQRELLEGF 146 >gi|227514587|ref|ZP_03944636.1| metal-dependent hydrolase [Lactobacillus fermentum ATCC 14931] gi|227086998|gb|EEI22310.1| metal-dependent hydrolase [Lactobacillus fermentum ATCC 14931] Length = 157 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 10/149 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E L+ E + KA++ + E+SL F + I LN +YRGID+ T+V+ Sbjct: 10 EGKLQPSQERLAEKALAQ--AAERLDVPEQAEMSLTFVLNPEIRELNRDYRGIDRATDVI 67 Query: 85 SFPTAFASS--------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 SF + LGD+V++ + + +A L + L +L++HGFLH Sbjct: 68 SFAIEDDDDLANLPAEIRAELPVELGDLVISIDKVTEQALFLNHSADRELGYLLVHGFLH 127 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGIN 165 L GYDH + D M L+ IL+ LG++ Sbjct: 128 LNGYDHEEPADEKKMFTLQEEILDGLGLS 156 >gi|111221447|ref|YP_712241.1| putative metalloprotease [Frankia alni ACN14a] gi|122954432|sp|Q0RP74|RRMF_FRAAA RecName: Full=Probable rRNA maturation factor gi|111148979|emb|CAJ60659.1| conserved hypothetical protein [Frankia alni ACN14a] Length = 181 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 18/156 (11%) Query: 15 IAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +A E+ DE+ L L V N + ELS++ + + L+ Sbjct: 5 VANESGANDVDEVRLTALARFVLDAMKVN----------PLAELSVMLVEEKAMADLHVR 54 Query: 74 YRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 Y G + PT+VLSF A D + +LGD+VL ++ +A G E L Sbjct: 55 YMGEEGPTDVLSFAQDDAFDASWSESVDDDPTTLLGDVVLCPDVARRQAEQAGHSHEREL 114 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L HG LHLLGYDH + + M ++ +L Sbjct: 115 HLLCTHGILHLLGYDHAEPDEEREMWKIQNKLLASW 150 >gi|86739975|ref|YP_480375.1| putative metalloprotease [Frankia sp. CcI3] gi|123765131|sp|Q2JDJ6|RRMF_FRASC RecName: Full=Probable rRNA maturation factor gi|86566837|gb|ABD10646.1| protein of unknown function UPF0054 [Frankia sp. CcI3] Length = 201 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 18/156 (11%) Query: 15 IAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +A E+ DE+ L L V N + ELS++ + + L+ Sbjct: 5 VANESGASDVDEVRLAALARFVLDAMKVN----------PLAELSVMLVEPKAMTDLHVR 54 Query: 74 YRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 Y G + PT+VLSFP A D + +LGD+VL ++ +A G F+ L Sbjct: 55 YMGEEGPTDVLSFPQDDAFDASWSESVDDDPTTLLGDVVLCPDVARRQAEQAGHSFDREL 114 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L HG LHLLGYDH + + M ++ +L Sbjct: 115 SLLCTHGILHLLGYDHAEPDEEREMWKVQSQLLASW 150 >gi|158320283|ref|YP_001512790.1| hypothetical protein Clos_1248 [Alkaliphilus oremlandii OhILAs] gi|166977843|sp|A8MG66|RRMF_ALKOO RecName: Full=Probable rRNA maturation factor gi|158140482|gb|ABW18794.1| protein of unknown function UPF0054 [Alkaliphilus oremlandii OhILAs] Length = 151 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 5/153 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ ++N EI L E++ + LI +G+ E E+SL F D+ I+ LN Sbjct: 1 MELLIDNRQDRYEIT-DALIELINKAVEACLIYEGW---EIDYEVSLSFVDNQEIQALNH 56 Query: 73 EYRGIDKPTNVLSFPTAFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 YRG D T+VLSFP + +LGDIV++ E +A FE + L++ Sbjct: 57 TYRGKDYATDVLSFPLIEENQGLDLEEKLLGDIVISVEKAAEQAKEYNHSFEREMGFLVV 116 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H HL+GYDH D+ M E ++L + + Sbjct: 117 HSMFHLMGYDHDHDEATADMRKREEAVLTAINL 149 >gi|226325256|ref|ZP_03800774.1| hypothetical protein COPCOM_03048 [Coprococcus comes ATCC 27758] gi|225206604|gb|EEG88958.1| hypothetical protein COPCOM_03048 [Coprococcus comes ATCC 27758] Length = 164 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 17/155 (10%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L+ E + K ++ E VEL + T + I +N E+RGID+ T+VLS Sbjct: 11 LDLKLPYEELATKVADAVLDYEKCPYEAQVEL--LLTMNEEIRQMNLEFRGIDRATDVLS 68 Query: 86 FPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 FP LMLG+IV++ E + +A G E LI Sbjct: 69 FPMTEFPSPADYAYLDTDDSSFDPETGELMLGNIVISKERAKEQAEEYGHSVEREFAFLI 128 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 H LHLLGYDH++D++ VME +R +LE LGI Sbjct: 129 AHSMLHLLGYDHMEDEERLVMEKKQREVLEMLGIT 163 >gi|169824430|ref|YP_001692041.1| putative metal-dependent hydrolase [Finegoldia magna ATCC 29328] gi|238687740|sp|B0S1B1|RRMF_FINM2 RecName: Full=Probable rRNA maturation factor gi|167831235|dbj|BAG08151.1| putative metal-dependent hydrolase [Finegoldia magna ATCC 29328] Length = 153 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 11/161 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI+ + + L + E I + ++ E+SL F I L Sbjct: 1 MIIQISNRQEDFQIDDELTSDIEKSIR------ICLLQELNDDNYEISLSFVSESEIRKL 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YR D T+VLSFP + +LGDI++ + +A + +V+L+ Sbjct: 55 NSDYRDKDSVTDVLSFP--LDDDFAIQTNLLGDIIICCKRAIEQAKEYNHSIKREIVYLV 112 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +H HLLGYDH+D+ D +M E+S L+++GI Y+ + Sbjct: 113 VHSMFHLLGYDHIDESDRIIMRNKEKSALKEIGI---YKDE 150 >gi|255291932|dbj|BAH90420.1| hypothetical protein [uncultured bacterium] Length = 155 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 7/130 (5%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 V+ + + E+++ LN ++R D TNVL+F + A L Sbjct: 30 VARWLRAALGEQVQAAEITVRIVGDDEGRQLNRDFRARDYATNVLTFDYSGA------PL 83 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSI 158 + D+VL ++ EA GK +H HL++HG LH G++H D+DA ME E ++ Sbjct: 84 VAADLVLCAPVVAREAAEQGKPLADHYAHLLVHGALHAQGWEHETSDEDAEAMEAHESAV 143 Query: 159 LEDLGINDPY 168 L LG+ DPY Sbjct: 144 LTGLGLPDPY 153 >gi|269794667|ref|YP_003314122.1| hypothetical protein Sked_13480 [Sanguibacter keddieii DSM 10542] gi|269096852|gb|ACZ21288.1| conserved hypothetical protein TIGR00043 [Sanguibacter keddieii DSM 10542] Length = 153 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ DE L V + + + ELS++F + + L Sbjct: 1 MSIEVNNESGYEVDEAEFAALGRFVLDEMHVH----------SQTELSILFVGTEVMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP + + +LGD+V+ E+ I+A G + Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGREGEVTPAGLLGDVVVCPEVAAIQAQGAGHSTVEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH + ++ M GL+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEPEEEKEMFGLQRRLL 143 >gi|297520691|ref|ZP_06939077.1| putative metalloprotease [Escherichia coli OP50] Length = 107 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 51/107 (47%), Positives = 66/107 (61%), Gaps = 2/107 (1%) Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E Sbjct: 1 AESHSLNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEA 58 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I+ LG DPY + Sbjct: 59 HWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAE 105 >gi|159899181|ref|YP_001545428.1| hypothetical protein Haur_2662 [Herpetosiphon aurantiacus ATCC 23779] gi|159892220|gb|ABX05300.1| protein of unknown function UPF0054 [Herpetosiphon aurantiacus ATCC 23779] Length = 174 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 20/154 (12%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF--- 86 L + + V+ +++ + E+ + T+ + LN +YRG+D+PT+VLSF Sbjct: 16 ALDTSLLEQVVAQVLADEG--QTGTWEIGIRITNDQELHELNRQYRGVDRPTDVLSFGEY 73 Query: 87 ---------------PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 F + + LGD+ ++YE + +A L +L+ Sbjct: 74 EDDDDDFIVPDGVYDDDEFDDPEADEAAYLGDLAISYERVLAQAQEYAHSSRRELCYLVA 133 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HG LHLLGYDH D++ M E L LGI Sbjct: 134 HGTLHLLGYDHETDEEREDMRQREEKALSTLGIT 167 >gi|311741361|ref|ZP_07715185.1| metalloprotease [Corynebacterium pseudogenitalium ATCC 33035] gi|311303531|gb|EFQ79610.1| metalloprotease [Corynebacterium pseudogenitalium ATCC 33035] Length = 205 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 22/164 (13%) Query: 11 LDLQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + ++ E+ G +E L + F N E ++ D IE Sbjct: 1 MSIEFLNESGFEGVNEEMLIDVASYAFGAMDIN----------PDAECTVTCVDLKTIED 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-----------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 L+ + ++ PT+V+SFP + MLGDIVL E +A Sbjct: 51 LHVRWMDLEGPTDVMSFPMDELTPGAIAGGGRPDAADPGPAMLGDIVLCPEFALRQAEAA 110 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 G + L L +HG LHLLGYDH + M G + +L D Sbjct: 111 GHSLGHELALLTVHGCLHLLGYDHSTPAEEKEMFGRQNELLADW 154 >gi|297160576|gb|ADI10288.1| putative metalloprotease [Streptomyces bingchenggensis BCW-1] Length = 165 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 17/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MAIDVNNESGTEIDERAVLDVARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEEAPTGHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M GL+ +I++ Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDERAEMFGLQAAIVDGW 149 >gi|255323734|ref|ZP_05364862.1| putative metalloprotease [Corynebacterium tuberculostearicum SK141] gi|255299224|gb|EET78513.1| putative metalloprotease [Corynebacterium tuberculostearicum SK141] Length = 205 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 22/164 (13%) Query: 11 LDLQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + ++ E+ G +E L + F N E ++ D IE Sbjct: 1 MSIEFLNESGFEGVNEEMLIDVASYAFGAMDIN----------PDAECTITCVDLKTIED 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-----------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 L+ + ++ PT+V+SFP + MLGDIVL E +A Sbjct: 51 LHVRWMDLEGPTDVMSFPMDELTPGAIAGGGRPDAADPGPAMLGDIVLCPEFALRQAEAA 110 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 G + L L +HG LHLLGYDH + M G + +L D Sbjct: 111 GHSLGHELALLTVHGCLHLLGYDHSTPAEEKEMFGRQNELLADW 154 >gi|91789935|ref|YP_550887.1| hypothetical protein Bpro_4096 [Polaromonas sp. JS666] gi|123164394|sp|Q124Q3|RRMF_POLSJ RecName: Full=Probable rRNA maturation factor gi|91699160|gb|ABE45989.1| protein of unknown function UPF0054 [Polaromonas sp. JS666] Length = 154 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 15/164 (9%) Query: 7 NLPRLDLQIAVENALWGDEI-HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++P L ++++ + H L + +S+ + + E+++ D+ Sbjct: 4 DVPLRQLDLSLQFGQFPGVARHRAALPRRRVQRWISHAL-------KTDAEITVRIVDAE 56 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++LN +YR D TNVL+F ++ D+VL ++E EA GK E H Sbjct: 57 EGQSLNRDYRRKDYATNVLTFDYTR------EPVVTADLVLCAPVVEREAREQGKTLEAH 110 Query: 126 LVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDLGINDPY 168 HL++H LH GYDH ++ DA ME LE +L L +PY Sbjct: 111 YAHLLVHATLHAQGYDHETNERDALEMEALEILLLASLRFANPY 154 >gi|18311000|ref|NP_562934.1| putative metalloprotease [Clostridium perfringens str. 13] gi|26006929|sp|Q8XIU5|RRMF_CLOPE RecName: Full=Probable rRNA maturation factor gi|18145682|dbj|BAB81724.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 168 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 17/131 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------------- 94 + E+SLVF D+ I +N E RGIDK T+VLSFP D Sbjct: 35 KEDCEVSLVFVDNEEIRGINNETRGIDKATDVLSFPMIDYPEDKVYKDVYLEHEFDKCYF 94 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 L+LGDIVL+ E + ++ FE +L+ H LHLLGYDH+++++ M G Sbjct: 95 DGDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGR 154 Query: 155 ERSILEDLGIN 165 E +L L I Sbjct: 155 EEELLGKLNIT 165 >gi|300933262|ref|ZP_07148518.1| putative metalloprotease [Corynebacterium resistens DSM 45100] Length = 194 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 18/160 (11%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ E+ +E L + + ELS+ D I Sbjct: 1 MSIEVFNESGRGEVNEEELIDVARYALWT----------LDVHSAAELSIHIVDLDTIAD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ + + PT+V+SFP S MLGDI+L + E +AN G Sbjct: 51 LHERWLDLPGPTDVMSFPMDELTPGWGRKDGPPPSPAMLGDIMLCPDFAERQANRAGHSL 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLG+DH ++ M L+ IL + Sbjct: 111 AHELDLLTVHGVLHLLGFDHTTPEEEQRMFSLQNEILANW 150 >gi|260436620|ref|ZP_05790590.1| putative metalloprotease [Synechococcus sp. WH 8109] gi|260414494|gb|EEX07790.1| putative metalloprotease [Synechococcus sp. WH 8109] Length = 172 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 64/164 (39%), Gaps = 12/164 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLI----------SKGYFVKENIVELSL 59 LDL + E + L E V+ + + + L L Sbjct: 2 ELDLALDREGVTLQPSDSIDLLDETVWLQQFDRWLNGICGDASLACPPLVRSAEELSLGL 61 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--MLGDIVLAYEIIEIEANV 117 FTD I LN +R PT+VLSF + D LGDIV++ E +A Sbjct: 62 RFTDDAAIADLNSAWRQKTGPTDVLSFAALDDAGDWMEGPSIELGDIVVSLETARRQAQE 121 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 G L L+ HG LHLLG+DH D+ M L+ +L D Sbjct: 122 QGHSLNRELRWLVSHGLLHLLGWDHPDEDSLAAMLALQERLLGD 165 >gi|50955089|ref|YP_062377.1| putative metalloprotease [Leifsonia xyli subsp. xyli str. CTCB07] gi|59799105|sp|Q6AEC4|RRMF_LEIXX RecName: Full=Probable rRNA maturation factor gi|50951571|gb|AAT89272.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 153 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+A+ DE L+ L F EL+++ D +E L Sbjct: 1 MSIEVNNESAIAADEAKLQRLAGYTFD----------IMHVHPDAELAILLVDEAAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP + + +LGD+VL ++ +++A G + L Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGTEDEPSPAGLLGDVVLCPQVAQVQAETTGHTLMDEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L+ HG LHLLG+DH + + M G++R IL Sbjct: 111 LLLMTHGILHLLGFDHAEPAEEREMFGIQRDIL 143 >gi|332652573|ref|ZP_08418318.1| putative metalloprotease [Ruminococcaceae bacterium D16] gi|332517719|gb|EGJ47322.1| putative metalloprotease [Ruminococcaceae bacterium D16] Length = 322 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L+ +I +E + G E + L +V+ A + + E+ ++FTD I + Sbjct: 162 LNHEIIIETEVDGAEEYADLLRQVIPAALAAEGVDV-------PCEVDVLFTDDEGIHQI 214 Query: 71 NFEYRGIDKPTNVLSFPT----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N E R +D+PT+VLSFP + G + + LGD+V++ E + + G Sbjct: 215 NLEQREVDRPTDVLSFPMFDLQPGEHPTQEDADPGDNLVPLGDMVISLERAKAQGEEYGH 274 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDLGI 164 + +L +H LHLLGYDH+D+ M E IL LGI Sbjct: 275 GTRREVAYLAVHSVLHLLGYDHMDEGPMKKQMRQREEEILGTLGI 319 >gi|294789474|ref|ZP_06754710.1| putative metalloprotease [Simonsiella muelleri ATCC 29453] gi|294482554|gb|EFG30245.1| putative metalloprotease [Simonsiella muelleri ATCC 29453] Length = 174 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 5/171 (2%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M + + P L +Q + I+ + ++ K I E+SLV Sbjct: 7 MKKQTKHFPFLRIQ---QQRFALSYINESSATDLPTEKQFYQWIWHALKNFYYRAEISLV 63 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVL 118 D N +YRG D TNVLSF ++ GD+++ ++ EA Sbjct: 64 LLDEAAARQYNHDYRGKDYATNVLSFAHNEGEFLFVEQDDVLRGDLIICPRVVAKEATEQ 123 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK +H HL+IHG LHL+G+DH++D +A ME LE +L L I +PYE Sbjct: 124 GKALHDHYAHLVIHGTLHLIGFDHMEDDEAEEMENLETELLAQLNIVNPYE 174 >gi|302534335|ref|ZP_07286677.1| conserved hypothetical protein [Streptomyces sp. C] gi|302443230|gb|EFL15046.1| conserved hypothetical protein [Streptomyces sp. C] Length = 165 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ DE + + + + +S ELS++ D +E L Sbjct: 1 MSIDVNNESGTEVDEQAILDIARYALTRMRIHPLS----------ELSVIVIDEDAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGDEAPTRHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ GI P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPDEKAEMFGLQAAIVDGWRAERGITGP 158 >gi|184155314|ref|YP_001843654.1| hypothetical protein LAF_0838 [Lactobacillus fermentum IFO 3956] gi|238692971|sp|B2GBZ2|RRMF_LACF3 RecName: Full=Probable rRNA maturation factor gi|183226658|dbj|BAG27174.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] Length = 157 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 10/149 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E L+ E + KA++ + E+SL F + I LN +YRGID+ T+V+ Sbjct: 10 EGKLQPSQERLAEKALAQ--AAERLDVPEQAEMSLTFVLNPEIRELNRDYRGIDRATDVI 67 Query: 85 SFPTAFASS--------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 SF + LGD+V++ + + +A L + L +L++HGFLH Sbjct: 68 SFAIEDDDDLANLPAEIRAELPVELGDLVISIDKVTEQALFLNHSADRELGYLLVHGFLH 127 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGIN 165 L GYDH + D M L+ IL+ LG++ Sbjct: 128 LNGYDHEEPADEEKMFTLQEEILDGLGLS 156 >gi|126730911|ref|ZP_01746720.1| hypothetical protein SSE37_13898 [Sagittula stellata E-37] gi|126708627|gb|EBA07684.1| hypothetical protein SSE37_13898 [Sagittula stellata E-37] Length = 178 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 83/170 (48%), Gaps = 23/170 (13%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 VE+ W +++ FV + E++++ RI LN ++RG Sbjct: 7 VEDDRWEAAGLAALAEAAA-----QETLAQLGFV-ADDYEIAVMGCSDGRIAILNADFRG 60 Query: 77 IDKPTNVLSFPTAFASSDGC-----------------SSLMLGDIVLAYEIIEIEANVLG 119 PTNVLS+PT +S LGD+ LA+E E EA Sbjct: 61 RPAPTNVLSWPTQELTSPDAGGDPFLPHLDDDFEAMGEPHHLGDLALAWETCEREAAEQD 120 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 K +H+ HL++HG LHL+GYDH+ D DA +MEGLER IL +LGI DPY Sbjct: 121 KSMADHVTHLLVHGVLHLMGYDHIRDADATLMEGLERGILGNLGIADPYR 170 >gi|167465835|ref|ZP_02330924.1| hypothetical protein Plarl_25263 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 150 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 19/128 (14%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS----------------- 98 E++L F ++ I LN +YRGID+PT+VLSF D Sbjct: 21 EVTLTFVNNDMIHELNRQYRGIDRPTDVLSFAMQEMGEDELIISYGELDEDGIEAVLEDK 80 Query: 99 --LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LGDI+++ +A G FE L L +HGFLHL+GYDH + + M + Sbjct: 81 IVEPLGDIIISIPKTIEQAEEYGHSFERELGFLFVHGFLHLVGYDHQTEDEEKKMFAKQE 140 Query: 157 SILEDLGI 164 IL G+ Sbjct: 141 LILSQAGL 148 >gi|114567084|ref|YP_754238.1| metal-dependent hydrolase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317921|sp|Q0AWN7|RRMF_SYNWW RecName: Full=Probable rRNA maturation factor gi|114338019|gb|ABI68867.1| metal-dependent hydrolase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 156 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 V+N ++K + N ELS++ D+ I+ LN YRG + PT+VLSF S + Sbjct: 25 VANAVAKMVKLSPN-TELSVMIVDNSYIKELNLIYRGENNPTDVLSFAMNELSEEEMDLD 83 Query: 100 M------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 + LGDIV++ E ++ G E L +LI HG LHLLGYDH ++++ +M Sbjct: 84 LPGEVNVLGDIVVSLEKAVSQSEEYGHSAERELGYLIAHGMLHLLGYDHENEEERNLMRN 143 Query: 154 LERSILEDLGIN 165 LE I+ + + Sbjct: 144 LEERIMHKVKLE 155 >gi|289548111|ref|YP_003473099.1| hypothetical protein Thal_0337 [Thermocrinis albus DSM 14484] gi|289181728|gb|ADC88972.1| protein of unknown function UPF0054 [Thermocrinis albus DSM 14484] Length = 161 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 4/117 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VELSL T I LN EYRG DKPT+VLSFP S +LGDIV++++ + + Sbjct: 38 VELSLYITTDQVIRELNREYRGKDKPTDVLSFPIGEKVG---SFTLLGDIVISWDTAKKQ 94 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYEV 170 A G E + L +HG +HLLGYDH ++ LE +L +L P+ Sbjct: 95 AKEYGHSTEEEIKRLALHGLVHLLGYDHELGGEEERKFFSLENYLLSELSHIAPWSW 151 >gi|289423899|ref|ZP_06425692.1| putative metalloprotease [Peptostreptococcus anaerobius 653-L] gi|289155676|gb|EFD04348.1| putative metalloprotease [Peptostreptococcus anaerobius 653-L] Length = 158 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LGDIV 105 Y ++ E+SL F D+ I LN E+R ID+ T+VLSFP + LGDIV Sbjct: 32 YEDYDDNYEVSLSFVDNEEIRNLNREFRNIDRVTDVLSFPMLSDDEFDIEYEVESLGDIV 91 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + + +A E + L+ H HLLGYDH+++++A M E +L L I Sbjct: 92 ISIQRADEQAEEFDHSLEREICFLVCHSMFHLLGYDHMEEEEAKDMHRREEEVLNGLDIT 151 >gi|300788461|ref|YP_003768752.1| metalloprotease [Amycolatopsis mediterranei U32] gi|299797975|gb|ADJ48350.1| putative metalloprotease [Amycolatopsis mediterranei U32] Length = 190 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + DE + + K + + ELS++ +E L Sbjct: 1 MSIEIANESGVDVDETSIVSAARYALDKMEVS----------PLAELSILLVTLEVMEDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V++FP + S +LGDIVL + +A G + Sbjct: 51 HERWMDLPGPTDVMAFPMDELDSSRRPDAPDASPALLGDIVLCPAFAKDQAKTAGHALID 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M L++ IL + Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPAEEREMFALQKRILGEY 148 >gi|168281735|ref|ZP_02689402.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675946|gb|EDT87851.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 155 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 5/136 (3%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L F + + +K K+ E F D I+ +N YR D T+V+SF Sbjct: 16 KLYSQRFKQITDLVSTKLNIDKKRFFECH--FVDEKTIQEINRNYRNKDYITDVISFAF- 72 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + +LG++ + Y+ + +AN FE L L HG LHLLGYDH+ +D Sbjct: 73 --DDGEIITPLLGEMYICYQKVVDQANQFAHSFERELCFLFTHGLLHLLGYDHMKIEDEK 130 Query: 150 VMEGLERSILEDLGIN 165 +M L+ IL +L I Sbjct: 131 IMFALQDEILNELKIT 146 >gi|260587672|ref|ZP_05853585.1| putative metalloprotease [Blautia hansenii DSM 20583] gi|331084038|ref|ZP_08333145.1| hypothetical protein HMPREF0992_02069 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541937|gb|EEX22506.1| putative metalloprotease [Blautia hansenii DSM 20583] gi|330402400|gb|EGG81970.1| hypothetical protein HMPREF0992_02069 [Lachnospiraceae bacterium 6_1_63FAA] Length = 164 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 17/156 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E +L E + K + + Y E++LV T + I+ N E+R ID+ T+VL Sbjct: 10 EENLDFDYEELAKKVIEAALD--YEGCPYETEINLVLTGNEEIQQTNREFRNIDRVTDVL 67 Query: 85 SFPTAF---------ASSDGC------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP A D L+LGDI++ ++ +A G L Sbjct: 68 SFPMLDFTAPADFSVAEEDDTCFHPESGELILGDIMICIPRMQEQAESYGHGQIREFAFL 127 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 I H LHL+GYDH++ ++A ME + IL LGI Sbjct: 128 IAHSMLHLMGYDHMEPEEAKEMERKQEEILASLGIT 163 >gi|291279469|ref|YP_003496304.1| hypothetical protein DEFDS_1079 [Deferribacter desulfuricans SSM1] gi|290754171|dbj|BAI80548.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 154 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 13/153 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +L++ I +N + + + E+VF + L + E+SL+ T+S I+ Sbjct: 6 KLNILINKKNPVQVSDDFFYKVSELVFEQINYPL---------SEAEISLLLTNSEEIKI 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R D PT+VLSFP + +LGDIV+ + +E + +E L L Sbjct: 57 LNKNFRDKDYPTDVLSFPMN---DECLEDSILGDIVINLDKVEEYSKENDIPYERELAFL 113 Query: 130 IIHGFLHLLGYDH-VDDKDACVMEGLERSILED 161 IHG LHLLGYDH +++++ +M L+ IL+ Sbjct: 114 YIHGLLHLLGYDHEINEEEEKIMFDLQEDILKK 146 >gi|168204743|ref|ZP_02630748.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens E str. JGS1987] gi|170663561|gb|EDT16244.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens E str. JGS1987] Length = 168 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 17/131 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------------- 94 + E+SLVF D+ I +N E RGID+ T+VLSFP D Sbjct: 35 KEDCEVSLVFVDNEEIRGINSETRGIDRATDVLSFPMIDYPEDKVYKDVYLEHEFDKCYF 94 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 L+LGDIVL+ E + ++ FE +L+ H LHLLGYDH+++++ M G Sbjct: 95 DGDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGR 154 Query: 155 ERSILEDLGIN 165 E +L L I Sbjct: 155 EEELLGKLNIT 165 >gi|307634994|gb|ADI85044.2| protein of unknown function UPF0054 [Geobacter sulfurreducens KN400] Length = 150 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 10/152 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++A+ N I R L + V+ I ++ ELS+V T I +N Sbjct: 1 MKVAITNRQKRHPIGTRRL------RKVAETILGALGYPDS--ELSVVITGDLGIRRVNR 52 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +Y G D+PTNV+SF + +LGD++++ + EA G F + L L++H Sbjct: 53 DYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREAEEAGIAFWSRLCFLLLH 112 Query: 133 GFLHLLGYDHV--DDKDACVMEGLERSILEDL 162 G LH+ GYDH + +A ME ER I L Sbjct: 113 GTLHITGYDHERSGEAEARRMEAKEREIFALL 144 >gi|328882369|emb|CCA55608.1| metal-dependent hydrolase [Streptomyces venezuelae ATCC 10712] Length = 165 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ + DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MSIDVNNESGIEVDEQAILDIARYALARMRIHPLS----------ELSVIVVDAEAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVATQQGKDAPTEHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + ++ M GL+ +I++ G+ P Sbjct: 111 EELQLLTVHGVLHLLGYDHEEPEEKAEMFGLQAAIVDGWREEKGLTGP 158 >gi|220912722|ref|YP_002488031.1| metalloprotease [Arthrobacter chlorophenolicus A6] gi|254801508|sp|B8H8R4|RRMF_ARTCA RecName: Full=Probable rRNA maturation factor gi|219859600|gb|ACL39942.1| protein of unknown function UPF0054 [Arthrobacter chlorophenolicus A6] Length = 157 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L L +F + ELS++ D +E L Sbjct: 1 MSIEVNNESGVEVDEAGLVALSRYIFEQ----------LYIHPQAELSILLVDEPAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + E T+VLS P MLGDI + ++ +++A G ++ + Sbjct: 51 HIELMDEPGATDVLSVPMDDLTPGTPDRPTPQGMLGDIAICPQVAQVQAKNAGHALQDEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLGYDH + ++ M GL+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEPEEKEEMFGLQRELLTGF 146 >gi|169343547|ref|ZP_02864546.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens C str. JGS1495] gi|169298107|gb|EDS80197.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens C str. JGS1495] Length = 168 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 17/131 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------------- 94 + E+SLVF D+ I +N E RGID+ T+VLSFP D Sbjct: 35 KEDCEVSLVFVDNEEIRGINNETRGIDRATDVLSFPMIDYPEDKVYKDVYLEHEFDKCYF 94 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 L+LGDIVL+ E + ++ FE +L+ H LHLLGYDH+++++ M G Sbjct: 95 DGDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGR 154 Query: 155 ERSILEDLGIN 165 E +L L I Sbjct: 155 EEELLGKLNIT 165 >gi|326692991|ref|ZP_08229996.1| putative metalloprotease [Leuconostoc argentinum KCTC 3773] Length = 157 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 9/138 (6%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--- 92 +V N + + +N E+S+ F ++ I+ N EYRG+DKPT+V+SF Sbjct: 20 LVTSVINFAGQALALPDN-TEMSITFVNNDDIQRYNREYRGVDKPTDVISFAIEEGDDVF 78 Query: 93 ----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKD 147 + +GDI+++ ++I +A LG +E L L++HGFLHL GYDH+ D + Sbjct: 79 EQFAEIDEIAKNIGDIIVSVDVIATQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAE 138 Query: 148 ACVMEGLERSILEDLGIN 165 M L+R IL+D G+ Sbjct: 139 EKEMFDLQRKILDDYGLK 156 >gi|291519462|emb|CBK74683.1| conserved hypothetical protein TIGR00043 [Butyrivibrio fibrisolvens 16/4] Length = 165 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 77/168 (45%), Gaps = 20/168 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E+ + E V V+ + F E E+S+ TD+ I+ +N Sbjct: 1 MTIFIESEC---DFDFDFDYEKVAKDVVNTAMDHLGFPFE--AEISITITDNDGIQAINK 55 Query: 73 EYRGIDKPTNVLSFPTAFASSDG---------------CSSLMLGDIVLAYEIIEIEANV 117 E+R ID PT+VLSFP + G ++LGDIVL+ I +A Sbjct: 56 EFRNIDAPTDVLSFPMIDYPAPGKFDHIENDDDLFNPETGEVILGDIVLSVPRILSQAEE 115 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LI H LHL G+DH+ + DA VME +R IL+ L I+ Sbjct: 116 YGHSVLREYAFLIAHSMLHLFGFDHMTESDASVMEQKQREILDILNIS 163 >gi|206891031|ref|YP_002248706.1| hypothetical protein THEYE_A0868 [Thermodesulfovibrio yellowstonii DSM 11347] gi|254806638|sp|B5YKE1|RRMF_THEYD RecName: Full=Probable rRNA maturation factor gi|206742969|gb|ACI22026.1| conserved hypothetical protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 159 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 3/107 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S++F +++ LN +YRG + T++LSFP ++ +L LG+I++ + + +A Sbjct: 53 ISVIFVGDQKMKELNSKYRGKNSVTDILSFPY--LENEPSGNLFLGEIIINPKKVFSQAK 110 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDL 162 K F L ++ HG LHLLGYDH D +A M LE+ IL +L Sbjct: 111 QYNKTFWQELDRILAHGILHLLGYDHEVSDSEARKMRKLEQKILSNL 157 >gi|259046833|ref|ZP_05737234.1| metalloprotease [Granulicatella adiacens ATCC 49175] gi|259036456|gb|EEW37711.1| metalloprotease [Granulicatella adiacens ATCC 49175] Length = 169 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 11/132 (8%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-----------SS 93 + + E S+ F S RI +N ++R IDK T+V+SF Sbjct: 34 AADFLKIPQTKECSISFVSSERIREINRDFRNIDKVTDVISFALDDDDDDLASMQSIMEE 93 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 D +GDIV++ + + +A G E L L +HGFLHL GYDH +++ M G Sbjct: 94 DDSFVTSIGDIVISLDRAKEQAEDYGHSLERELGFLALHGFLHLNGYDHQTEEEEAEMTG 153 Query: 154 LERSILEDLGIN 165 L++ ILE G+ Sbjct: 154 LQQEILEAYGLT 165 >gi|163848855|ref|YP_001636899.1| hypothetical protein Caur_3323 [Chloroflexus aurantiacus J-10-fl] gi|222526810|ref|YP_002571281.1| hypothetical protein Chy400_3584 [Chloroflexus sp. Y-400-fl] gi|189039853|sp|A9WJ51|RRMF_CHLAA RecName: Full=Probable rRNA maturation factor gi|254765075|sp|B9LD66|RRMF_CHLSY RecName: Full=Probable rRNA maturation factor gi|163670144|gb|ABY36510.1| protein of unknown function UPF0054 [Chloroflexus aurantiacus J-10-fl] gi|222450689|gb|ACM54955.1| protein of unknown function UPF0054 [Chloroflexus sp. Y-400-fl] Length = 154 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLA 107 E+ + T + LN ++RG+D PT+VLSF S LGDI ++ Sbjct: 34 PEGCEVGIRITTDDELHRLNRDFRGVDAPTDVLSFADDGHDSRFVVAPDQPRYLGDIAIS 93 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGIN 165 Y+ + +A G L +L +HG LHLLGYDH +A M E I+ LG+ Sbjct: 94 YQRVLAQAAEYGHSPARELAYLTVHGVLHLLGYDHEQGPAEAARMRTREEEIMTILGLP 152 >gi|110800128|ref|YP_696698.1| putative metalloprotease [Clostridium perfringens ATCC 13124] gi|168208720|ref|ZP_02634345.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens B str. ATCC 3626] gi|168212945|ref|ZP_02638570.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens CPE str. F4969] gi|182624386|ref|ZP_02952170.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens D str. JGS1721] gi|122958755|sp|Q0TNU2|RRMF_CLOP1 RecName: Full=Probable rRNA maturation factor gi|110674775|gb|ABG83762.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens ATCC 13124] gi|170713197|gb|EDT25379.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens B str. ATCC 3626] gi|170715613|gb|EDT27795.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens CPE str. F4969] gi|177910389|gb|EDT72766.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens D str. JGS1721] Length = 168 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 17/131 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------------- 94 + E+SLVF D+ I +N E RGID+ T+VLSFP D Sbjct: 35 KEDCEVSLVFVDNEEIRGINNETRGIDRATDVLSFPMIDYPEDKVYKDVYLEHEFDKCYF 94 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 L+LGDIVL+ E + ++ FE +L+ H LHLLGYDH+++++ M G Sbjct: 95 DGDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGR 154 Query: 155 ERSILEDLGIN 165 E +L L I Sbjct: 155 EEELLGKLNIT 165 >gi|209542256|ref|YP_002274485.1| hypothetical protein Gdia_0068 [Gluconacetobacter diazotrophicus PAl 5] gi|209529933|gb|ACI49870.1| protein of unknown function UPF0054 [Gluconacetobacter diazotrophicus PAl 5] Length = 202 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 15/158 (9%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D + V +A W + A+ ++ + + ++++ + I LN Sbjct: 46 DCDVVVTDARWHGAVPG--------IAALVRRTARAAWGGDAPGPVTIMLDNDRAIRRLN 97 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +R +KPTNVL+F D L GDI++A E + EA G+ +HL+HL++ Sbjct: 98 ARHRDRNKPTNVLTF-------DYPGGLPGGDIMIALETVRREAQAAGRPIRHHLMHLVV 150 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HG LHL G+DH +A ME E IL L + +P++ Sbjct: 151 HGILHLRGHDHHQAGEARRMEMEEARILGRLSVPNPWK 188 >gi|168307881|ref|ZP_02690556.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902725|gb|EDT49014.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 155 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 5/136 (3%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L F + + +K K+ E F D I+ +N YR D T+V+SF Sbjct: 16 KLYSQRFKQITDLVSTKLNIDKKRFFECH--FVDEKTIQKINKNYRNKDYITDVISFAF- 72 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + +LG++ + Y+ + +A+ FE L L HG LHLLGYDH+ +D Sbjct: 73 --DDGEIITPLLGEMYICYQKVVDQASQFAHSFERELCFLFTHGLLHLLGYDHIKIEDEK 130 Query: 150 VMEGLERSILEDLGIN 165 +M L+ IL +L I Sbjct: 131 IMFALQDEILNELKIT 146 >gi|13358053|ref|NP_078327.1| hypothetical protein UU490 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971447|ref|ZP_02553724.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|170762010|ref|YP_001752574.1| hypothetical protein UPA3_0508 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|29428267|sp|Q9PQ00|RRMF_UREPA RecName: Full=Probable rRNA maturation factor gi|189040230|sp|B1AJD0|RRMF_UREP2 RecName: Full=Probable rRNA maturation factor gi|11356818|pir||A82884 conserved hypothetical UU490 [imported] - Ureaplasma urealyticum gi|6899488|gb|AAF30902.1|AE002147_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827587|gb|ACA32849.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|186701087|gb|EDU19369.1| conserved hypothetical protein TIGR00043 [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 155 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 5/136 (3%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L F + + +K K+ E F D I+ +N YR D T+V+SF Sbjct: 16 KLYSQRFKQITDLVSTKLNIDKKRFFECH--FVDEKTIQEINKNYRNKDYITDVISFAF- 72 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + +LG++ + Y+ + +A+ FE L L HG LHLLGYDH+ +D Sbjct: 73 --DDGEIITPLLGEMYICYQKVVDQASQFAHSFERELCFLFTHGLLHLLGYDHIKIEDEK 130 Query: 150 VMEGLERSILEDLGIN 165 +M L+ IL +L I Sbjct: 131 IMFALQDEILNELKIT 146 >gi|260662172|ref|ZP_05863068.1| metal-dependent hydrolase [Lactobacillus fermentum 28-3-CHN] gi|260553555|gb|EEX26447.1| metal-dependent hydrolase [Lactobacillus fermentum 28-3-CHN] Length = 157 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L E V A+A L E+SL F + I LN +YRGID+ T+V+SF Sbjct: 18 ERLAEKVLAQAAERLDVPEQ------AEMSLTFVLNPEIRELNRDYRGIDRATDVISFAI 71 Query: 89 AFASS--------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 + LGD+V++ + + +A L + L +L++HGFLHL GY Sbjct: 72 EDDDDLANLPAEIRAELPVELGDLVISIDKVTEQALFLNHSADRELGYLLVHGFLHLNGY 131 Query: 141 DHVDDKDACVMEGLERSILEDLGIN 165 DH + D M L+ IL+ LG++ Sbjct: 132 DHEEPADEEKMFTLQEEILDGLGLS 156 >gi|17227767|ref|NP_484315.1| putative metalloprotease [Nostoc sp. PCC 7120] gi|26006906|sp|Q8Z032|RRMF_NOSS1 RecName: Full=Probable rRNA maturation factor gi|17135249|dbj|BAB77795.1| all0271 [Nostoc sp. PCC 7120] Length = 184 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 7/155 (4%) Query: 16 AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 A + + + D + F + + L S E+ L TD I+ +N +YR Sbjct: 27 AAQASGYMDSQVSPATWQDWFHRWLEILDSS--LPPAPSYEIGLRLTDDTEIQAINAQYR 84 Query: 76 GIDKPTNVLSFPTAFASSDG-----CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +KPT+VL+F L LGDIV++ + +A L L Sbjct: 85 QQNKPTDVLAFAALEVDLPQNPEMVAEPLYLGDIVVSINTAQRQAGQQEHSLSTELAWLT 144 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HG LHLLG+DH D++ M + +LE +GIN Sbjct: 145 AHGLLHLLGWDHPDEESLIAMLQQQVVLLEAIGIN 179 >gi|119960557|ref|YP_947971.1| metalloprotease [Arthrobacter aurescens TC1] gi|166227688|sp|A1R6V9|RRMF_ARTAT RecName: Full=Probable rRNA maturation factor gi|119947416|gb|ABM06327.1| putative uncharacterized protein family UPF0054 [Arthrobacter aurescens TC1] Length = 157 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 15/165 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L TL +F + ELS++ D +E L Sbjct: 1 MSIEVNNESGVVVDEAQLVTLSRFIFER----------LYIHPQAELSILLVDEPAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + E T+VLS P MLGDI + ++ E++A G ++ + Sbjct: 51 HIELMDEPGATDVLSVPMDELTPGTPEKPTPQGMLGDIAICPQVAEVQARNAGHPTQDEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDPYEV 170 + L HG LHLLG+DH + ++ M GL+R +L + LG + P E Sbjct: 111 LLLTTHGILHLLGFDHAEPEEKEEMFGLQRELLSEFLGKDAPMET 155 >gi|262203048|ref|YP_003274256.1| hypothetical protein Gbro_3158 [Gordonia bronchialis DSM 43247] gi|262086395|gb|ACY22363.1| protein of unknown function UPF0054 [Gordonia bronchialis DSM 43247] Length = 188 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ A E+ + E+ + E V+ ++ LS++ D + + Sbjct: 1 MSIEFANESGV---EVPAELIIEAARFAIVAMDVNPAAL-------LSVLCVDEDTMADM 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ + PT+V+SFP + +LGDIVL E +A + F++ Sbjct: 51 HVQWMDLPGPTDVMSFPMDELVPGGRPDAADLGPAILGDIVLCPEFAAQQAKTAKRSFDH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHLLG+DH D + M GL+ IL+ Sbjct: 111 ELSMLTIHGVLHLLGFDHADPDEEREMFGLQNEILDAF 148 >gi|85859387|ref|YP_461589.1| metal-dependent hydrolase [Syntrophus aciditrophicus SB] gi|123516585|sp|Q2LTL4|RRMF_SYNAS RecName: Full=Probable rRNA maturation factor gi|85722478|gb|ABC77421.1| predicted metal-dependent hydrolase [Syntrophus aciditrophicus SB] Length = 160 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 10/156 (6%) Query: 5 KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 K R+ + IA+ N +I LR + + V L+ V E+SL+F D Sbjct: 2 KRAFERMSMAIAIRNQQKKVKIDLRQI-----RRRVQKLL---RLVDCREKEISLLFVDD 53 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 I+ +N Y G + PTNV+SF + + +LGDIV++ + +A + Sbjct: 54 EEIQEINQRYLGRNYPTNVISFSLSEGEFSSVNPDVLGDIVISVDTASRDAERGNIPVSD 113 Query: 125 HLVHLIIHGFLHLLGYDHV--DDKDACVMEGLERSI 158 L LIIHG LH+LGY+H + ++ M+ E+ + Sbjct: 114 ELDFLIIHGLLHILGYNHENNNPEETACMQKKEQEL 149 >gi|312869122|ref|ZP_07729296.1| translation metalloprotein YbeY [Lactobacillus oris PB013-T2-3] gi|311095368|gb|EFQ53638.1| translation metalloprotein YbeY [Lactobacillus oris PB013-T2-3] Length = 159 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 17/164 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL I E L + V ++ +K++ E+S+ + I L Sbjct: 1 MDLTIYDETDGQVSPAQL------ALVRDVLQFAARQLSLKDS-TEMSVTMMTNPAIRKL 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC----------SSLMLGDIVLAYEIIEIEANVLGK 120 N +YRG+D+ T+VLSF + + LGD+ ++ + +E +A LG Sbjct: 54 NQQYRGVDRATDVLSFAAEESGDETPIIMDPELAAELPENLGDLFVSIDKVEEQAKFLGH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L++HGFLHL GYDH D M L+R IL++ G+ Sbjct: 114 SVDRELGFLVVHGFLHLNGYDHEKQADEQRMFDLQREILDEYGL 157 >gi|110801968|ref|YP_699299.1| putative metalloprotease [Clostridium perfringens SM101] gi|122956576|sp|Q0SRF8|RRMF_CLOPS RecName: Full=Probable rRNA maturation factor gi|110682469|gb|ABG85839.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens SM101] Length = 168 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 17/131 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------------- 94 + E+SLVF D+ I +N E RGIDK T+VLSFP D Sbjct: 35 KEDCEVSLVFVDNEEIRGINNETRGIDKTTDVLSFPMIDYPEDKVYKDVYLEHEFDKCYF 94 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 L+LGDIVL+ E + ++ FE +L+ H LHLLGYDH+++++ M G Sbjct: 95 DGDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGR 154 Query: 155 ERSILEDLGIN 165 E +L L I Sbjct: 155 EEELLGKLNIT 165 >gi|116491017|ref|YP_810561.1| metal-dependent hydrolase [Oenococcus oeni PSU-1] gi|290890498|ref|ZP_06553573.1| hypothetical protein AWRIB429_0963 [Oenococcus oeni AWRIB429] gi|122276801|sp|Q04F76|RRMF_OENOB RecName: Full=Probable rRNA maturation factor gi|116091742|gb|ABJ56896.1| Predicted metal-dependent hydrolase [Oenococcus oeni PSU-1] gi|290479894|gb|EFD88543.1| hypothetical protein AWRIB429_0963 [Oenococcus oeni AWRIB429] Length = 153 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 9/154 (5%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +++ + L + V A A + + E+S+ F + +I +N EY Sbjct: 5 IVLDDKQKELDNDDAKLVKKVLAFAFD------FMQLKQNYEMSVNFVNDEKIHQINKEY 58 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLM--LGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 R D+ T+V+SF + + LGD+ ++ + +A + L +L +H Sbjct: 59 RNTDRATDVISFALEESDRIHIDGVAEELGDLFISLDHAHAQAEEYLHSYNRELAYLAVH 118 Query: 133 GFLHLLGYDHVDDKDAC-VMEGLERSILEDLGIN 165 GFLHLLGYDH + A M GL+ ILE G+ Sbjct: 119 GFLHLLGYDHTRSQAAEDEMFGLQDKILEGYGLT 152 >gi|86159141|ref|YP_465926.1| hypothetical protein Adeh_2719 [Anaeromyxobacter dehalogenans 2CP-C] gi|123498733|sp|Q2ILG1|RRMF_ANADE RecName: Full=Probable rRNA maturation factor gi|85775652|gb|ABC82489.1| protein of unknown function UPF0054 [Anaeromyxobacter dehalogenans 2CP-C] Length = 193 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 3/112 (2%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ELS++ RI TLN E+R D+ T+VLSFP + G +LGD+V++ + Sbjct: 33 EDAELSILLVTDRRIRTLNREWRQKDQATDVLSFPISEPPGAGA---LLGDVVISLDTAA 89 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A G+ L + HG LHLLGYDH DA M E + G+ Sbjct: 90 RRARSDGRRVGAELDRYLAHGILHLLGYDHERPADARAMAEKEAELARAEGL 141 >gi|225429386|ref|XP_002278343.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1499 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + + RLD+ IA+ ++ + + + + + G F VELS++ Sbjct: 1037 LNIAEMLRLDVPIAM-------KLAFEGIKDSEYKTRDTTISDLGGF---ENVELSVLLC 1086 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 + I LN E+R D T+VLS LMLGDIV++ E +A G Sbjct: 1087 NDEFIRKLNKEWRDEDHATDVLSMSQHIPEL-KLPILMLGDIVISVETAARQAEERGHTL 1145 Query: 123 ENHLVHLIIHGFLHLLGYDHV 143 + + L++HG LHLLG+DH Sbjct: 1146 LDEIRILMVHGLLHLLGFDHE 1166 >gi|300780717|ref|ZP_07090571.1| metalloprotease [Corynebacterium genitalium ATCC 33030] gi|300532424|gb|EFK53485.1| metalloprotease [Corynebacterium genitalium ATCC 33030] Length = 195 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVL 106 E+++ DS + L+ + + PT+V+SFP + MLGDI+L Sbjct: 35 DTEVTITCVDSPTMADLHMRWMDLPGPTDVMSFPMDELSPGSARPDAAAIGPAMLGDIIL 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + +A G + + L +HG LHLLGYDH D M GL+ IL D Sbjct: 95 CPDYDRKQAEAAGHPLGHEMALLTVHGVLHLLGYDHATPADEREMFGLQNEILADW 150 >gi|241895553|ref|ZP_04782849.1| metal-dependent hydrolase [Weissella paramesenteroides ATCC 33313] gi|241871131|gb|EER74882.1| metal-dependent hydrolase [Weissella paramesenteroides ATCC 33313] Length = 160 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 18/166 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL I ++ E ++ + +V+ + Y E+S+ F ++ I+ Sbjct: 1 MDLAIIDQSKPGVPEEQVKLVNDVLNY-------AGKYLSLPENTEMSVTFVNNDEIQRY 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD----------GCSSLMLGDIVLAYEIIEIEANVLGK 120 N EYRG+DK T+V+SF D + +GDI+++ + I +A L Sbjct: 54 NREYRGLDKATDVISFAIEDDGDDLPLLIDDEMADDIAKNIGDIIVSVDKIGEQAEYLEH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 +E L L++HGFLHL GYDH+ + D +M L+R IL+ G+ Sbjct: 114 SYERELGFLVVHGFLHLNGYDHMRSEADEKIMFDLQREILDSYGLK 159 >gi|210623872|ref|ZP_03294107.1| hypothetical protein CLOHIR_02058 [Clostridium hiranonis DSM 13275] gi|210153298|gb|EEA84304.1| hypothetical protein CLOHIR_02058 [Clostridium hiranonis DSM 13275] Length = 153 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 4/144 (2%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+I ++ V ++ + + ++S+ F D+ I LN ++RG+D+ T+V Sbjct: 10 DKIDIKDELYEKIEDIVEEVLDYEGYS--DDYDISISFVDNKEIHELNKQFRGVDRATDV 67 Query: 84 LSFPTAFASSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 LSFP + + LGDIV++ E ++ G FE + L+ H HLLGYD Sbjct: 68 LSFPMLSDEFEDVEYEEMSLGDIVVSLERALEQSIEYGHSFEREVCFLVCHSMFHLLGYD 127 Query: 142 HVDDKDACVMEGLERSILEDLGIN 165 H D++ M E ++L L I Sbjct: 128 HDTDENTREMREKEEAVLTKLNIT 151 >gi|269127453|ref|YP_003300823.1| hypothetical protein Tcur_3246 [Thermomonospora curvata DSM 43183] gi|268312411|gb|ACY98785.1| protein of unknown function UPF0054 [Thermomonospora curvata DSM 43183] Length = 156 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 19/161 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L L V + + ELSL+ D + L Sbjct: 1 MSIEVLNESGVEVDEQALVRLARHVLDE----------LRVHPLAELSLLLVDEEAMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF---------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + ++ G PT+VL+FP + +LGD+VL + E + G Sbjct: 51 HVKWMGEPGPTDVLAFPMDELRPGHRPGGGEEEDPDPALLGDVVLCPAVAERQGAEAGHG 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L HG LHLLGYDH D ++ M GL+ +L Sbjct: 111 TQAELELLCTHGILHLLGYDHADPEEHKEMFGLQERLLNSW 151 >gi|125973584|ref|YP_001037494.1| hypothetical protein Cthe_1069 [Clostridium thermocellum ATCC 27405] gi|256003403|ref|ZP_05428394.1| protein of unknown function UPF0054 [Clostridium thermocellum DSM 2360] gi|281417789|ref|ZP_06248809.1| protein of unknown function UPF0054 [Clostridium thermocellum JW20] gi|166228137|sp|A3DEC2|RRMF_CLOTH RecName: Full=Probable rRNA maturation factor gi|125713809|gb|ABN52301.1| protein of unknown function UPF0054 [Clostridium thermocellum ATCC 27405] gi|255992693|gb|EEU02784.1| protein of unknown function UPF0054 [Clostridium thermocellum DSM 2360] gi|281409191|gb|EFB39449.1| protein of unknown function UPF0054 [Clostridium thermocellum JW20] gi|316940174|gb|ADU74208.1| protein of unknown function UPF0054 [Clostridium thermocellum DSM 1313] Length = 162 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 15/164 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I +EN D+I + + KA+ + F E E+S++ TD+ +I +N+ Sbjct: 1 MEIFIENIQ--DKIEITDEILELMEKAIKMCLEHEKF--EYPYEVSIILTDNEKIREINY 56 Query: 73 EYRGIDKPTNVLSFPTAFASSD-----------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 E R IDKPT+VLSFP ++LGDI+++ E + ++ G Sbjct: 57 EQRNIDKPTDVLSFPIVDMYDGVIKSSQGDFDLDEGRIILGDILISMEKAKEQSMEYGHS 116 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 FE L+ L+ HG HLLGYDH + M + +IL+ L + Sbjct: 117 FERELIFLLTHGVFHLLGYDHDTPEREKKMFEKQEAILKSLNLE 160 >gi|168181634|ref|ZP_02616298.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum Bf] gi|237796401|ref|YP_002863953.1| putative metalloprotease [Clostridium botulinum Ba4 str. 657] gi|259646946|sp|C3L3F6|RRMF_CLOB6 RecName: Full=Probable rRNA maturation factor gi|182675188|gb|EDT87149.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum Bf] gi|229263327|gb|ACQ54360.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum Ba4 str. 657] Length = 166 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 17/128 (13%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSD-GC 96 E+S+VF D++ I+ +N +YR IDK T+VLSFP F SD Sbjct: 37 DYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEEGKVFKDVYLNYEFDESDLDE 96 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +L+LGDI L+ E E ++ G F +L IH LHLLGYDH+++++ +M E Sbjct: 97 GNLILGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEEEKAIMRQREE 156 Query: 157 SILEDLGI 164 IL+ + Sbjct: 157 EILKSFNL 164 >gi|260583649|ref|ZP_05851397.1| metalloprotease [Granulicatella elegans ATCC 700633] gi|260158275|gb|EEW93343.1| metalloprotease [Granulicatella elegans ATCC 700633] Length = 161 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 13/153 (8%) Query: 26 IHLRTLCEVVFAKAVSNLISKG--YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 I + + + K V +++S Y E + F S RI +N ++R IDK T+V Sbjct: 6 IDETEVVKEEYQKLVEDVVSFASDYLHYPENRECCISFVSSERIREINRDFRNIDKVTDV 65 Query: 84 LSFPTAFASSDGCSSLM-----------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +SF D +GDI+++ + + +A G E L L +H Sbjct: 66 ISFALDDEDEDMDPIKNFMASDENFVTSIGDIIISVDRAKEQAEEYGHSLERELGFLALH 125 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLHL GYDH +++ M GL+ IL G+ Sbjct: 126 GFLHLNGYDHQTEEEEKEMTGLQTEILTAYGLT 158 >gi|258645788|ref|ZP_05733257.1| putative metalloprotease [Dialister invisus DSM 15470] gi|260403159|gb|EEW96706.1| putative metalloprotease [Dialister invisus DSM 15470] Length = 164 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 4/139 (2%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + ++SKG ++ ELSL+ D+ I LN YRG+D PT+VLSF Sbjct: 11 EQFYSEELETLILRVLSKGAELQNVAEDAELSLLICDADTIHELNKTYRGVDAPTDVLSF 70 Query: 87 PTAFASSDGCSSL--MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + +LGDI++ +A G E + +L +HGFLH+LGYDH D Sbjct: 71 ALNEGEEEDGMEEEKVLGDIIINLYRAVEQAEEFGHSKEREMAYLSVHGFLHILGYDHYD 130 Query: 145 DKDACVMEGLERSILEDLG 163 ++ M E IL G Sbjct: 131 PEEKRKMREKEEEILGACG 149 >gi|227432227|ref|ZP_03914223.1| metal-dependent hydrolase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352000|gb|EEJ42230.1| metal-dependent hydrolase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 160 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 11/132 (8%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----- 99 + Y + E+S+ F ++ I N +YRGIDKPT+V+SF D Sbjct: 28 AGKYLELPDNTEMSVTFMNNEEIHQYNKKYRGIDKPTDVISFAIEEDGDDLPVLPDEFMD 87 Query: 100 -----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEG 153 +GDI+++ +II +A LG +E L L++HGFLHL GYDH+ D + M Sbjct: 88 AVLAKNIGDILVSVDIINSQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFD 147 Query: 154 LERSILEDLGIN 165 L+R IL++ G+ Sbjct: 148 LQREILDNYGLK 159 >gi|168215645|ref|ZP_02641270.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens NCTC 8239] gi|182382067|gb|EDT79546.1| conserved hypothetical protein TIGR00043 [Clostridium perfringens NCTC 8239] Length = 168 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 17/131 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------------- 94 + E+SLVF D+ I +N E RGID+ T+VLSFP D Sbjct: 35 KEDCEVSLVFVDNEEIRGINNETRGIDRATDVLSFPMIDYPEDKVYKDVYLEHEFDKCYF 94 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 L+LGDIVL+ E + ++ FE +L+ H LHLLGYDH+++++ M G Sbjct: 95 DEDELILGDIVLSLERTKEQSIEFNHSFEREACYLVTHSVLHLLGYDHMEEEEKARMRGR 154 Query: 155 ERSILEDLGIN 165 E +L L I Sbjct: 155 EEELLGKLNIT 165 >gi|313892397|ref|ZP_07825989.1| translation metalloprotein YbeY [Dialister microaerophilus UPII 345-E] gi|329121359|ref|ZP_08249985.1| putative metalloprotease [Dialister micraerophilus DSM 19965] gi|313119256|gb|EFR42456.1| translation metalloprotein YbeY [Dialister microaerophilus UPII 345-E] gi|327469768|gb|EGF15234.1| putative metalloprotease [Dialister micraerophilus DSM 19965] Length = 169 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 3/139 (2%) Query: 29 RTLCEVVFAKAVSNLISKGYFVK--ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + C + + ++ KG ++ EL ++ + RI LN +YRGID PT+VLSF Sbjct: 10 QKYCNEETEQLILKVLKKGAELQKLPEDAELGVLICGAERIHELNRDYRGIDAPTDVLSF 69 Query: 87 PTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 LGDI+L + + +A++ G E + +L +HGFLH+LGYDH + Sbjct: 70 ALNEGEDYIPEEEKALGDIILNIDRAKEQAHMYGHSEEREMAYLSVHGFLHILGYDHYEA 129 Query: 146 KDACVMEGLERSILEDLGI 164 ++ M E IL G+ Sbjct: 130 EEKKEMRKAEEDILGACGL 148 >gi|25028742|ref|NP_738796.1| putative metalloprotease [Corynebacterium efficiens YS-314] gi|259507803|ref|ZP_05750703.1| metalloprotease [Corynebacterium efficiens YS-314] gi|29428209|sp|Q8FNF8|RRMF_COREF RecName: Full=Probable rRNA maturation factor gi|23494028|dbj|BAC18996.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164596|gb|EEW49150.1| metalloprotease [Corynebacterium efficiens YS-314] Length = 200 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCS 97 + G E S+ DS I L+ ++ ++ PT+V+SFP Sbjct: 26 ALGEMDIHPDAEASIHIVDSDTIAELHVKWLDLEGPTDVMSFPMDELTPGYSRPDGGAPG 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 MLGDIVL E E +A G + + L L +HG LHLLGYDHV+ M L+ Sbjct: 86 PAMLGDIVLCPEFAEKQATKAGHDLSHELALLTVHGCLHLLGYDHVEPAQEREMFALQNE 145 Query: 158 ILEDL 162 +L D Sbjct: 146 LLADW 150 >gi|113478351|ref|YP_724412.1| putative metalloprotease [Trichodesmium erythraeum IMS101] gi|122964299|sp|Q10UY5|RRMF_TRIEI RecName: Full=Probable rRNA maturation factor gi|110169399|gb|ABG53939.1| protein of unknown function UPF0054 [Trichodesmium erythraeum IMS101] Length = 183 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 24/175 (13%) Query: 11 LDLQIAVENALWGDEIHLRTL----------------CEVVFAKAVSNLISKGYFVKENI 54 + L++ +++ W ++ L E F K + I + Sbjct: 1 MYLKVNIQDYFWSSSSEVKKLKLQEDRDQKCPIFFYRWEYWFQKWLE--ILQPNIPPAQN 58 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAY 108 ELSL TD I+ LN +YR ++PT+VL+F L LGDIV++ Sbjct: 59 YELSLRLTDDSEIQILNNKYRYQNQPTDVLAFANLEVDIPQPEVVDSDLQLYLGDIVISV 118 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E +A G L L HGFLHLLG+DH+D + M + +L +G Sbjct: 119 ETAFQQAKQQGHPLITELTWLAAHGFLHLLGWDHLDQESWQKMVKQQLFLLNAVG 173 >gi|170017068|ref|YP_001727987.1| metal-dependent hydrolase [Leuconostoc citreum KM20] gi|238688965|sp|B1MYE1|RRMF_LEUCK RecName: Full=Probable rRNA maturation factor gi|169803925|gb|ACA82543.1| Predicted metal-dependent hydrolase [Leuconostoc citreum KM20] Length = 160 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 11/122 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------GCSSLMLGDI 104 E+S+ F ++ I+ N +YRG+DKPT+V+SF D + +GDI Sbjct: 38 TEMSVTFVNNDEIQRYNRDYRGVDKPTDVISFAIEEGEDDFNIISDDAWTEDIAKNIGDI 97 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLG 163 +++ +II +A LG +E L L++HGFLHL GYDH+ D + M L+R IL++ G Sbjct: 98 IVSVDIIGAQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQREILDNYG 157 Query: 164 IN 165 + Sbjct: 158 LK 159 >gi|171743045|ref|ZP_02918852.1| hypothetical protein BIFDEN_02170 [Bifidobacterium dentium ATCC 27678] gi|283455944|ref|YP_003360508.1| hypothetical protein BDP_1043 [Bifidobacterium dentium Bd1] gi|171278659|gb|EDT46320.1| hypothetical protein BIFDEN_02170 [Bifidobacterium dentium ATCC 27678] gi|283102578|gb|ADB09684.1| Conserved hypothetical protein [Bifidobacterium dentium Bd1] Length = 181 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|238809604|dbj|BAH69394.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 173 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 3/136 (2%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L E + + + NL + F V + + T++ I+ LN EYR D PT++LSF Sbjct: 37 LFEKEYKQILENLAKE--FGLNQTVSVDVTITNNDEIQKLNKEYRNKDYPTDILSFGLED 94 Query: 91 AS-SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + LG++V+++E +E +A +L HG +HL+GYDH + + Sbjct: 95 WELFENMPIYPLGELVISHEKVEAQAQEFVHSIRREYCYLFAHGLIHLMGYDHETEVERA 154 Query: 150 VMEGLERSILEDLGIN 165 M L I E L I+ Sbjct: 155 EMNKLVDLIFEPLKIS 170 >gi|291563244|emb|CBL42060.1| conserved hypothetical protein TIGR00043 [butyrate-producing bacterium SS3/4] Length = 165 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 18/158 (11%) Query: 25 EIHLRTLCEVVFAKAVSNLISKG--YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 E ++ + + + N+I + Y E++++ TD+ I +N + RGID PT+ Sbjct: 6 EYEAEEKLDLPYEEIIKNVIEESLDYVECPYDAEVNVLLTDNAGIHQINLDMRGIDNPTD 65 Query: 83 VLSFPT----------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 VLSFP L++GDIV++ + ++ +A G L Sbjct: 66 VLSFPMCDFETPGDFSHLEETPEEYFDPDTGELLMGDIVISVDKVKEQAEKYGHSQTREL 125 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L+ H LHL GYDH++D + ME ++R ILE G Sbjct: 126 AFLVAHSMLHLSGYDHMEDDERIQMEDMQREILERRGY 163 >gi|313888895|ref|ZP_07822555.1| translation metalloprotein YbeY [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845068|gb|EFR32469.1| translation metalloprotein YbeY [Peptoniphilus harei ACS-146-V-Sch2b] Length = 148 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 4/141 (2%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+I + + + K++++++ E VE+S+ F I+ LN +YRG+D+ T+V Sbjct: 10 DDIEITDEIKSLVEKSIASVLKVEGLDDE--VEVSVSFVGDEEIKNLNRDYRGVDRSTDV 67 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 LSFP +LGD+++ + +A LG E L +L +H LHLLGYDH+ Sbjct: 68 LSFPM--DDEFIIDKRILGDVIINTRRVMEQAEELGHSHERELSYLTVHSILHLLGYDHM 125 Query: 144 DDKDACVMEGLERSILEDLGI 164 +D+D M E+ +++L I Sbjct: 126 EDEDKREMREREKLSMKELEI 146 >gi|162447804|ref|YP_001620936.1| hypothetical protein ACL_0950 [Acholeplasma laidlawii PG-8A] gi|189040645|sp|A9NGT0|RRMF_ACHLI RecName: Full=Probable rRNA maturation factor gi|161985911|gb|ABX81560.1| conserved hypothetical protein [Acholeplasma laidlawii PG-8A] Length = 137 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 5/128 (3%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 ++ + + + ++F D+ +I +N YR IDKPT+V+SFP D Sbjct: 14 TQFEVILETVFKDIKEEKSMQVIFVDNDQIRDINKMYRNIDKPTDVISFPNDDEKDDS-- 71 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 LGDI ++ + +I+A G E + L +HG+LHLLGYDH + + M L+ Sbjct: 72 ---LGDIFISIDQAKIQALDYGHTLEREIGFLAVHGYLHLLGYDHHTEAEEKEMFTLQEE 128 Query: 158 ILEDLGIN 165 IL + Sbjct: 129 ILNKANLK 136 >gi|253577936|ref|ZP_04855208.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850254|gb|EES78212.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 164 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 22/170 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++QI E E L E + K ++ +++LV TD+ IE + Sbjct: 1 MNMQIDYET-----ERELGIDYETLAVKVADKVLEME--KCPYDAQVNLVLTDNEEIERV 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------------GCSSLMLGDIVLAYEIIEIEA 115 N E+R I +PT+VLSFP + L+LGDI+++ + + +A Sbjct: 54 NTEFRDIARPTDVLSFPMIPFETPAGYDIVEEDESYFDLDTDELLLGDIMISVDKVFAQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G L+ H LHLLGYDH+ +A VME + LE+LGI Sbjct: 114 EEYGHSVTREFCFLVAHSMLHLLGYDHMTPGEATVMEAKQAKALEELGIT 163 >gi|160892625|ref|ZP_02073415.1| hypothetical protein CLOL250_00155 [Clostridium sp. L2-50] gi|156865666|gb|EDO59097.1| hypothetical protein CLOL250_00155 [Clostridium sp. L2-50] Length = 170 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 23/177 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L I E + E V +A+ + E+ ++ TD+ I+T+ Sbjct: 1 MSLNIENEFGEIRVP-DYEHVIETVIGQALD------FIKCPYECEIYVLLTDNSGIQTI 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC----------------SSLMLGDIVLAYEIIEIE 114 N R ID PT+VLSFP G LMLGDI+++ + + + Sbjct: 54 NNCQRNIDAPTDVLSFPLIDYKEPGDFSVVDGDTCDYFNPESGELMLGDIIISMDRVYEQ 113 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 A L L+ H LHL GYDH+D+++ ME L+ IL + G YE + Sbjct: 114 AKSYNHSNTRELAFLVAHSMLHLFGYDHIDEEERKQMEDLQEQILNEKGYTRDYEEN 170 >gi|227833630|ref|YP_002835337.1| hypothetical protein cauri_1806 [Corynebacterium aurimucosum ATCC 700975] gi|262184633|ref|ZP_06044054.1| putative metalloprotease [Corynebacterium aurimucosum ATCC 700975] gi|254800637|sp|C3PHU5|RRMF_CORA7 RecName: Full=Probable rRNA maturation factor gi|227454646|gb|ACP33399.1| hypothetical protein cauri_1806 [Corynebacterium aurimucosum ATCC 700975] Length = 191 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 20/162 (12%) Query: 11 LDLQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + ++ E+ G +E L +C G E ++ D I Sbjct: 1 MSIEFINESGYDGVNEEMLIDVCSYAL----------GCLDVNPDAECTITAVDLDTIAD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGK 120 L+ + ++ PT+V+SFP + MLGDIVL E + +A G Sbjct: 51 LHVRWMDLEGPTDVMSFPMDELTPGASAGRPDAVEAGPAMLGDIVLCPEFAQRQATAAGH 110 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLGYDH + M GL+ +L D Sbjct: 111 SLGHELALLTVHGCLHLLGYDHTTAAEEKEMFGLQNELLADW 152 >gi|282899045|ref|ZP_06307026.1| protein of unknown function UPF0054 [Cylindrospermopsis raciborskii CS-505] gi|281195961|gb|EFA70877.1| protein of unknown function UPF0054 [Cylindrospermopsis raciborskii CS-505] Length = 174 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 10/172 (5%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS--KGYFVKENIVELS 58 MS + +L +++ +EN+ D + E + S ++ + E+ Sbjct: 1 MSSQTKVQTQLQVELFIENSY--DLNLTNQVSEEKWYMWFSQWLTLLAVKLPRALSYEIG 58 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIE 112 L T+ +I+ LN +YR D+PT+VL+F + L LGDIV++ + Sbjct: 59 LQLTNDAQIQELNAQYRQKDQPTDVLAFAALENNFPYTEEMLASQPLYLGDIVISIDTAI 118 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +A L L HG LHLLG+DH D++ M + +L+ +GI Sbjct: 119 CQAQEREHNLTTELAWLSAHGLLHLLGWDHPDEQSLIEMLNKQSMLLKSVGI 170 >gi|15827258|ref|NP_301521.1| metalloprotease [Mycobacterium leprae TN] gi|221229736|ref|YP_002503152.1| putative metalloprotease [Mycobacterium leprae Br4923] gi|2851628|sp|Q49752|RRMF_MYCLE RecName: Full=Probable rRNA maturation factor gi|254806550|sp|B8ZUT0|RRMF_MYCLB RecName: Full=Probable rRNA maturation factor gi|13092807|emb|CAC30136.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932843|emb|CAR70721.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 178 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ E+ L ++ V K N ELS+V D+ + L Sbjct: 1 MSVEVSNESGFDVSEVELVSVARFVIIKMDVN----------PAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDEFEPGGRPDAAEPGPSMLGDIVLCPEFAAQQAAAEGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEKEMFALQGRLLEEW 148 >gi|306822850|ref|ZP_07456226.1| probable metalloprotease [Bifidobacterium dentium ATCC 27679] gi|309801136|ref|ZP_07695265.1| translation metalloprotein YbeY [Bifidobacterium dentium JCVIHMP022] gi|304553482|gb|EFM41393.1| probable metalloprotease [Bifidobacterium dentium ATCC 27679] gi|308222025|gb|EFO78308.1| translation metalloprotein YbeY [Bifidobacterium dentium JCVIHMP022] Length = 181 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|300173400|ref|YP_003772566.1| putative metalloprotease [Leuconostoc gasicomitatum LMG 18811] gi|299887779|emb|CBL91747.1| Putative metalloprotease [Leuconostoc gasicomitatum LMG 18811] Length = 160 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 11/125 (8%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----------DGCSSLML 101 + E+S+ F +S I+ N EYRG+DKPT+V+SF + Sbjct: 35 PDNTEMSVTFVNSDEIQRYNREYRGVDKPTDVISFALEEGDDTFDLSPEGDWADDIPKNI 94 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILE 160 GDI+++ +II +A+ LG +E L L++HGFLHL GYDH+ D + M L+R IL+ Sbjct: 95 GDILVSVDIIASQADYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFDLQRKILD 154 Query: 161 DLGIN 165 D G+ Sbjct: 155 DYGLK 159 >gi|126700056|ref|YP_001088953.1| hypothetical protein CD2440 [Clostridium difficile 630] gi|254976033|ref|ZP_05272505.1| hypothetical protein CdifQC_11999 [Clostridium difficile QCD-66c26] gi|255093421|ref|ZP_05322899.1| hypothetical protein CdifC_12284 [Clostridium difficile CIP 107932] gi|255101599|ref|ZP_05330576.1| hypothetical protein CdifQCD-6_12369 [Clostridium difficile QCD-63q42] gi|255307468|ref|ZP_05351639.1| hypothetical protein CdifA_12817 [Clostridium difficile ATCC 43255] gi|255315166|ref|ZP_05356749.1| hypothetical protein CdifQCD-7_12477 [Clostridium difficile QCD-76w55] gi|255517835|ref|ZP_05385511.1| hypothetical protein CdifQCD-_12036 [Clostridium difficile QCD-97b34] gi|255650951|ref|ZP_05397853.1| hypothetical protein CdifQCD_12241 [Clostridium difficile QCD-37x79] gi|260684020|ref|YP_003215305.1| hypothetical protein CD196_2285 [Clostridium difficile CD196] gi|260687680|ref|YP_003218814.1| hypothetical protein CDR20291_2332 [Clostridium difficile R20291] gi|306520831|ref|ZP_07407178.1| hypothetical protein CdifQ_14166 [Clostridium difficile QCD-32g58] gi|123362995|sp|Q182C6|RRMF_CLOD6 RecName: Full=Probable rRNA maturation factor gi|115251493|emb|CAJ69326.1| putative metal-dependent hydrolase [Clostridium difficile] gi|260210183|emb|CBA64380.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213697|emb|CBE05571.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 153 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIV 105 Y ++ E+SL F D+ I LN EYRG+D+ T+VLSFP + LGDIV Sbjct: 32 YEGYDDNYEVSLSFVDNKEIHELNREYRGVDRVTDVLSFPLLSDDFEDVELEEESLGDIV 91 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ E ++ FE + LI H HLLGYDH D++ M E IL L I Sbjct: 92 VSLERALEQSIEYNHSFEREVCFLICHSMFHLLGYDHDTDENTKEMREKEEHILNKLNIT 151 >gi|28378612|ref|NP_785504.1| hypothetical protein lp_1969 [Lactobacillus plantarum WCFS1] gi|254556827|ref|YP_003063244.1| hypothetical protein JDM1_1660 [Lactobacillus plantarum JDM1] gi|300768140|ref|ZP_07078045.1| metal-dependent hydrolase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180768|ref|YP_003924896.1| hypothetical protein LPST_C1586 [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258751|sp|Q88VR8|RRMF_LACPL RecName: Full=Probable rRNA maturation factor gi|28271448|emb|CAD64353.1| unknown [Lactobacillus plantarum WCFS1] gi|254045754|gb|ACT62547.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|300494204|gb|EFK29367.1| metal-dependent hydrolase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046259|gb|ADN98802.1| hypothetical protein LPST_C1586 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 159 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 10/132 (7%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC------- 96 ++ + E+S+ ++ I+ +N +YRG+D+PT+V+SF D Sbjct: 27 LAGQTLKLRDDTEVSVTLMNNDAIQKINEQYRGVDRPTDVISFAMHDDDEDDLIVMDPEM 86 Query: 97 ---SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 L LGDI+++ + + +A L L +L++HGFLHL GYDH+ D M Sbjct: 87 AAEMPLNLGDIMISVDKVSEQAAFLNHSEARELGYLVVHGFLHLNGYDHLQPADETEMFT 146 Query: 154 LERSILEDLGIN 165 L+R IL+ G+ Sbjct: 147 LQRQILDAYGLE 158 >gi|288916972|ref|ZP_06411344.1| protein of unknown function UPF0054 [Frankia sp. EUN1f] gi|288351681|gb|EFC85886.1| protein of unknown function UPF0054 [Frankia sp. EUN1f] Length = 159 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 18/159 (11%) Query: 15 IAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +A E+ + DE+ L L V N + ELS++ + + L+ Sbjct: 5 VANESGVTDFDEVTLAALARFVLDTMKVN----------PLAELSVMLVEVDAMTDLHVR 54 Query: 74 YRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 Y G D PT+VL+FP A + + +LGD+VL E+ +A G E L Sbjct: 55 YMGEDGPTDVLAFPQDEAFEPSWSESVEEDPTTLLGDVVLCPEVARRQAGQAGHGMEREL 114 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L HG LHLLGYDH + ++ M L+ S+L I Sbjct: 115 HILCTHGILHLLGYDHAEPEEEREMWKLQNSLLASWDIA 153 >gi|291287436|ref|YP_003504252.1| hypothetical protein Dacet_1527 [Denitrovibrio acetiphilus DSM 12809] gi|290884596|gb|ADD68296.1| protein of unknown function UPF0054 [Denitrovibrio acetiphilus DSM 12809] Length = 151 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 12/154 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + I + +G+ E VF V + E+SL+ T RI+ Sbjct: 2 EISILITDDTEAYGNSQLFSDCAEAVF---------SMLKVDFDDCEISLLLTTDDRIKE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN EYR D+ T+VLSFP + MLGDIV++ E + +A+ + + L Sbjct: 53 LNGEYRQKDRSTDVLSFPM--SEDPLSEGGMLGDIVISLETAKEQADEAAIMPDREIAFL 110 Query: 130 IIHGFLHLLGYDHVDD-KDACVMEGLERSILEDL 162 IHG LHL+GY+H +D + M L+ IL +L Sbjct: 111 FIHGLLHLMGYEHENDPDEEEEMFDLQEEILRNL 144 >gi|258651805|ref|YP_003200961.1| hypothetical protein Namu_1577 [Nakamurella multipartita DSM 44233] gi|258555030|gb|ACV77972.1| protein of unknown function UPF0054 [Nakamurella multipartita DSM 44233] Length = 186 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DEI L ++ V + N + ELS++ D + L Sbjct: 1 MTIEVANESGVPVDEIVLVSVARYVLDRMRIN----------PLAELSILLVDVEAMTEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ PT+V+SFP G +LGD+VL + +A G ++ Sbjct: 51 HVKWMDEPGPTDVMSFPMDELDTARRPDESGPGPALLGDVVLCPAVAAEQATAAGHSVQD 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + M L+ +L+ Sbjct: 111 ELHLLTVHGVLHLLGYDHAEPAQEREMFRLQNELLDTW 148 >gi|315925212|ref|ZP_07921426.1| metal dependent hydrolase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621446|gb|EFV01413.1| metal dependent hydrolase [Pseudoramibacter alactolyticus ATCC 23263] Length = 156 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L I EN DE+ L + L S+ V + I+E+SL I LN Sbjct: 2 LTIQFENQT--DEVLSEALWAKMQTCIRKTLASENVLVDKLILEVSLTLVSPETIRMLNA 59 Query: 73 EYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 YRGID+ T+VLSFP ++LGDIVL + G FE Sbjct: 60 NYRGIDRVTDVLSFPMLVFPEGMAALTAPSDLPILLGDIVLNPRRAAEQGETYGTGFERE 119 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + +L +H LHLLGYDH+D D M E++I++D Sbjct: 120 MCYLTVHSVLHLLGYDHMDPDDKQAMRAREKAIMDD 155 >gi|307155325|ref|YP_003890709.1| hypothetical protein Cyan7822_5562 [Cyanothece sp. PCC 7822] gi|306985553|gb|ADN17434.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 7822] Length = 181 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 8/137 (5%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + L++ + ELSL TD I+ N +YR ++PT+VL+F Sbjct: 41 WESWFQIWLEMLVAA--LPSSDSYELSLRLTDDQEIQYYNAQYRHKNQPTDVLAFAALEV 98 Query: 92 S------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 L LGDI+++ E +A G L +L HGFLHLLG+DH DD Sbjct: 99 EVPYQIDEFSDEPLYLGDIIISVETASRQATEQGHSLTRELANLAAHGFLHLLGWDHPDD 158 Query: 146 KDACVMEGLERSILEDL 162 + M + +L L Sbjct: 159 ESLMAMLSQQEILLNHL 175 >gi|225021772|ref|ZP_03710964.1| hypothetical protein CORMATOL_01800 [Corynebacterium matruchotii ATCC 33806] gi|305681061|ref|ZP_07403868.1| translation metalloprotein YbeY [Corynebacterium matruchotii ATCC 14266] gi|224945468|gb|EEG26677.1| hypothetical protein CORMATOL_01800 [Corynebacterium matruchotii ATCC 33806] gi|305659266|gb|EFM48766.1| translation metalloprotein YbeY [Corynebacterium matruchotii ATCC 14266] Length = 205 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 18/157 (11%) Query: 11 LDLQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ E+ G +E L + V + + E+++ D + Sbjct: 1 MSIEVVNESGYDGVNEESLADVATFVLREMDIH----------PSAEVTVSVVDVPTMSE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ + G++ PT+V+SFP S G MLGDI+L E +A G + Sbjct: 51 LHLRWMGLEGPTDVMSFPMDELTPNMGRPDSAGFGPAMLGDIILCPEFAHKQATKAGHDL 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L L HG LHLLGYDH+ + M L+ +L Sbjct: 111 GHELCLLTTHGCLHLLGYDHITPEQEQKMFALQNELL 147 >gi|87123560|ref|ZP_01079411.1| hypothetical protein RS9917_06855 [Synechococcus sp. RS9917] gi|86169280|gb|EAQ70536.1| hypothetical protein RS9917_06855 [Synechococcus sp. RS9917] Length = 196 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 + +A + L G + L L F D I LN +R K T+VLSF Sbjct: 43 AWLTLLRADTELTCPGPVRTAQAISLGLQFCDDATIAALNGTWRQKPKATDVLSFAALDG 102 Query: 92 SSDGCSSL--MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + LGDI+++ + +A G + L L+ HG LHLLG+DH D+ Sbjct: 103 DGPMPDAPCVELGDIIVSVDTAGRQAMEQGHGLVHELRWLVSHGLLHLLGWDHPDEAQLT 162 Query: 150 VMEGLERSILE 160 M + +L Sbjct: 163 AMLQCQERLLA 173 >gi|15841879|ref|NP_336916.1| putative metalloprotease [Mycobacterium tuberculosis CDC1551] gi|167968755|ref|ZP_02551032.1| hypothetical protein MtubH3_12240 [Mycobacterium tuberculosis H37Ra] gi|215404293|ref|ZP_03416474.1| putative metalloprotease [Mycobacterium tuberculosis 02_1987] gi|215412113|ref|ZP_03420877.1| putative metalloprotease [Mycobacterium tuberculosis 94_M4241A] gi|215427743|ref|ZP_03425662.1| putative metalloprotease [Mycobacterium tuberculosis T92] gi|215431307|ref|ZP_03429226.1| putative metalloprotease [Mycobacterium tuberculosis EAS054] gi|215446611|ref|ZP_03433363.1| putative metalloprotease [Mycobacterium tuberculosis T85] gi|218754095|ref|ZP_03532891.1| putative metalloprotease [Mycobacterium tuberculosis GM 1503] gi|219558359|ref|ZP_03537435.1| putative metalloprotease [Mycobacterium tuberculosis T17] gi|254232509|ref|ZP_04925836.1| hypothetical protein TBCG_02311 [Mycobacterium tuberculosis C] gi|254365144|ref|ZP_04981190.1| hypothetical protein TBHG_02306 [Mycobacterium tuberculosis str. Haarlem] gi|254551414|ref|ZP_05141861.1| putative metalloprotease [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187370|ref|ZP_05764844.1| putative metalloprotease [Mycobacterium tuberculosis CPHL_A] gi|260201491|ref|ZP_05768982.1| putative metalloprotease [Mycobacterium tuberculosis T46] gi|260205668|ref|ZP_05773159.1| putative metalloprotease [Mycobacterium tuberculosis K85] gi|294994529|ref|ZP_06800220.1| putative metalloprotease [Mycobacterium tuberculosis 210] gi|297634969|ref|ZP_06952749.1| putative metalloprotease [Mycobacterium tuberculosis KZN 4207] gi|297731961|ref|ZP_06961079.1| putative metalloprotease [Mycobacterium tuberculosis KZN R506] gi|298525849|ref|ZP_07013258.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313659295|ref|ZP_07816175.1| metal-binding heat shock protein [Mycobacterium tuberculosis KZN V2475] gi|54040529|sp|P67135|RRMF_MYCBO RecName: Full=Probable rRNA maturation factor gi|54042953|sp|P67134|RRMF_MYCTU RecName: Full=Probable rRNA maturation factor gi|171704548|sp|A1KL57|RRMF_MYCBP RecName: Full=Probable rRNA maturation factor gi|172048108|sp|A5U560|RRMF_MYCTA RecName: Full=Probable rRNA maturation factor gi|13882146|gb|AAK46730.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|124601568|gb|EAY60578.1| hypothetical protein TBCG_02311 [Mycobacterium tuberculosis C] gi|134150658|gb|EBA42703.1| hypothetical protein TBHG_02306 [Mycobacterium tuberculosis str. Haarlem] gi|298495643|gb|EFI30937.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length = 177 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + E L ++ V AK N ELS++ D+ + L Sbjct: 1 MSIEVANESGIDVSEAELVSVARFVIAKMDVN----------PCAELSMLLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAEQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEEW 148 >gi|170782109|ref|YP_001710442.1| putative metalloprotease [Clavibacter michiganensis subsp. sepedonicus] gi|189038996|sp|B0RCR5|RRMF_CLAMS RecName: Full=Probable rRNA maturation factor gi|169156678|emb|CAQ01836.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 153 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+A+ DE ++ L EL++V D +E L Sbjct: 1 MSIEINNESAVEVDEPLIQRLATYALDT----------LHVHPDAELAIVMVDEGAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP + +LGDIV+ ++ +A G + Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGTEDRPTPAGLLGDIVVCPQVAAEQAVTAGHSTMEEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLG+DH + + M GL+R IL Sbjct: 111 LLLTAHGILHLLGFDHAEPDEEREMFGLQRDIL 143 >gi|191638507|ref|YP_001987673.1| Putative metalloprotease LSEI_1518 [Lactobacillus casei BL23] gi|238693043|sp|B3WEL4|RRMF_LACCB RecName: Full=Probable rRNA maturation factor gi|190712809|emb|CAQ66815.1| Putative metalloprotease LSEI_1518 [Lactobacillus casei BL23] gi|327385739|gb|AEA57213.1| Probable rRNA maturation factor [Lactobacillus casei BD-II] Length = 152 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD- 94 K + K + EN E+S+ IE +N EYR D+ T+V+SF D Sbjct: 19 LIKKLVAFCGKQLKLPEN-TEMSITLVGDDEIERINREYRETDRVTDVISFAIEEGEDDL 77 Query: 95 ---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + +GD+ + + A G FE L + ++HGFLHL GYDH+ +D VM Sbjct: 78 PLLPGMAKNIGDLFIDPLTVRRHAEEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVM 137 Query: 152 EGLERSILEDLGIN 165 L++ IL G+ Sbjct: 138 IPLQKKILAAYGLT 151 >gi|317500212|ref|ZP_07958443.1| hypothetical protein HMPREF1026_00385 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087560|ref|ZP_08336491.1| metalloprotease [Lachnospiraceae bacterium 3_1_46FAA] gi|316898383|gb|EFV20423.1| hypothetical protein HMPREF1026_00385 [Lachnospiraceae bacterium 8_1_57FAA] gi|330400700|gb|EGG80304.1| metalloprotease [Lachnospiraceae bacterium 3_1_46FAA] Length = 164 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 21/154 (13%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 R + E+V ++ Y E+SL+ T I+ +N R ID+ T+VLSF Sbjct: 16 DARKIAELVIETSLD------YVKCPYETEVSLLLTTDEEIKEINRMQRQIDRATDVLSF 69 Query: 87 PTAFASSDG---------------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 P A + G LMLGDIV++ + + +A G LI Sbjct: 70 PMADYETPGDFSHLDEDAGLFHPDTGELMLGDIVISVDKVFEQAEEYGHSLLREYAFLIA 129 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 H LHL GYDH+++ + ME ++ I+E + I Sbjct: 130 HSMLHLFGYDHMEEVERKEMEMHQKKIMELVNIT 163 >gi|154487439|ref|ZP_02028846.1| hypothetical protein BIFADO_01291 [Bifidobacterium adolescentis L2-32] gi|154083957|gb|EDN83002.1| hypothetical protein BIFADO_01291 [Bifidobacterium adolescentis L2-32] Length = 181 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP + M LGDIVL + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGGTEMEGVLGDIVLCPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|78223573|ref|YP_385320.1| hypothetical protein Gmet_2370 [Geobacter metallireducens GS-15] gi|123742815|sp|Q39T29|RRMF_GEOMG RecName: Full=Probable rRNA maturation factor gi|78194828|gb|ABB32595.1| protein of unknown function UPF0054 [Geobacter metallireducens GS-15] Length = 150 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 5/129 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K ++S + ELS+V T I +N EY D+PTNV+SF A Sbjct: 19 LRKVAERILSA---LGYPDSELSVVITGDLGIRRVNREYLHKDRPTNVISFAMAEGEFGA 75 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV--DDKDACVMEG 153 + MLGD++++ + EA G F + L L++HG LH+ GYDH + +A ME Sbjct: 76 LNPAMLGDVIISADTAAREAEEGGVSFWSRLCFLLLHGILHITGYDHERSGEAEARRMEA 135 Query: 154 LERSILEDL 162 ER I L Sbjct: 136 KEREIFAIL 144 >gi|38234288|ref|NP_940055.1| putative metalloprotease [Corynebacterium diphtheriae NCTC 13129] gi|59799118|sp|Q6NG17|RRMF_CORDI RecName: Full=Probable rRNA maturation factor gi|38200551|emb|CAE50246.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 196 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 16/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ L +V G E ++ D + L Sbjct: 1 MSIEVVNESGF--DGVNEEALIDVA-------TFVLGEMDVHPDAEATISVVDVATMSDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + ++ PT+V+SFP + MLGDI+L E +A G + Sbjct: 52 HVRWMDLEGPTDVMSFPMDELTPGMGRPDAQPFGPAMLGDIILCPEFAAKQAAKAGHDMG 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L HG LHLLGYDH++ +D M L+ +L+D Sbjct: 112 HELALLTTHGCLHLLGYDHIEPEDEQEMFALQNELLQDW 150 >gi|75908994|ref|YP_323290.1| putative metalloprotease [Anabaena variabilis ATCC 29413] gi|123609226|sp|Q3M9E1|RRMF_ANAVT RecName: Full=Probable rRNA maturation factor gi|75702719|gb|ABA22395.1| Protein of unknown function UPF0054 [Anabaena variabilis ATCC 29413] Length = 176 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 7/155 (4%) Query: 16 AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 A + + + D E F + + L S E+ L TD I+ +N +YR Sbjct: 19 AAQASGYIDSQVSSATWEDWFHRWLEILDSS--LPPAPSYEIGLRLTDDTEIQAINAQYR 76 Query: 76 GIDKPTNVLSFPTAFASSDG-----CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 +KPT+VL+F A L LGDIV++ + +A L L Sbjct: 77 QQNKPTDVLAFAALEADLPQNPEMVAEPLYLGDIVVSINTAQRQAGQQEHSLSTELAWLT 136 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HG LHLLG+DH D++ M + +L+ +GI Sbjct: 137 AHGLLHLLGWDHPDEESLIAMLQQQVVLLDAVGIK 171 >gi|331701378|ref|YP_004398337.1| metalloprotease ybeY [Lactobacillus buchneri NRRL B-30929] gi|329128721|gb|AEB73274.1| metalloprotease ybeY [Lactobacillus buchneri NRRL B-30929] Length = 161 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 19/167 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E + + +V+ + Y + E+S+ ++ I + Sbjct: 1 MDLEIYDKTEKGVSEKDQKLIRDVL-------EFAGSYIHLADNTEMSMTLVNNDEIHQI 53 Query: 71 NFEYRGIDKPTNVLSFPTA------------FASSDGCSSLMLGDIVLAYEIIEIEANVL 118 N +YRG+D+ T+V+SF +GDI ++ + + +A+ L Sbjct: 54 NKKYRGVDRATDVISFAIEDDDDDDDFPIVMDEELKESIPENIGDIFVSVDKVAEQADYL 113 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G FE L L +HGFLHL GYDH+ DA VM L++ IL G+ Sbjct: 114 GHSFERELGFLCVHGFLHLNGYDHMKKADADVMFPLQKEILNAYGLK 160 >gi|148272750|ref|YP_001222311.1| putative metalloprotease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166231413|sp|A5CRB1|RRMF_CLAM3 RecName: Full=Probable rRNA maturation factor gi|147830680|emb|CAN01620.1| putative metal-dependent hydrolase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 153 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+A+ DE ++ L EL++V D +E L Sbjct: 1 MSIEINNESAIEVDEPVIQRLVTYALDT----------LHVHPDAELAIVMVDEGAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP + +LGDIV+ ++ +A G + Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGTEDRPTPAGLLGDIVVCPQVAAEQAVTAGHSTMEEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLG+DH + + M GL+R IL Sbjct: 111 LLLTAHGILHLLGFDHAEPDEEREMFGLQRDIL 143 >gi|187778471|ref|ZP_02994944.1| hypothetical protein CLOSPO_02065 [Clostridium sporogenes ATCC 15579] gi|187772096|gb|EDU35898.1| hypothetical protein CLOSPO_02065 [Clostridium sporogenes ATCC 15579] Length = 166 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 19/158 (12%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DEI + E + + + + + E+S+VF D++ I+ +N +YR IDK T+V Sbjct: 9 DEIKVNEEFENKIKEIIDYALKEERVNID--YEISVVFIDNNSIKEINKDYRNIDKVTDV 66 Query: 84 LSFPT----------------AFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LSFP F SD +L+LGDI L+ E E ++ F Sbjct: 67 LSFPMLDYEEGKVFKDIYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFEHSFLRET 126 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L IH LHLLGYDH+ + + +M E IL++ + Sbjct: 127 CYLTIHSVLHLLGYDHIKEDEKAIMRQREEEILKNFNL 164 >gi|169351077|ref|ZP_02868015.1| hypothetical protein CLOSPI_01856 [Clostridium spiroforme DSM 1552] gi|169292139|gb|EDS74272.1| hypothetical protein CLOSPI_01856 [Clostridium spiroforme DSM 1552] Length = 152 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--MLG 102 + + +ELS + D +I +N EYR ID+ T+V+SF + + +G Sbjct: 29 ASKQLEISDDLELSCILVDDQKIHEINKEYRNIDRATDVISFALEDSEQYYVEGMARNIG 88 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI ++ + ++AN G + + L HG LHLLG+DH++ +D M +++ IL L Sbjct: 89 DIFISVDHALMQANEYGHSLKREMCFLFTHGLLHLLGFDHMEKEDEEKMIAMQKKILNAL 148 Query: 163 GIN 165 I Sbjct: 149 KIE 151 >gi|116617889|ref|YP_818260.1| metal-dependent hydrolase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271910|sp|Q03Y35|RRMF_LEUMM RecName: Full=Probable rRNA maturation factor gi|116096736|gb|ABJ61887.1| Predicted metal-dependent hydrolase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 160 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 11/132 (8%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----- 99 + Y + E+S+ F ++ I N +YRGIDKPT+V+SF D Sbjct: 28 AGKYLELPDNTEMSVTFMNNEEIHQYNKKYRGIDKPTDVISFAIEEDGDDLPVLPDELMD 87 Query: 100 -----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEG 153 +GDI+++ +II +A LG +E L L++HGFLHL GYDH+ D + M Sbjct: 88 AELAKNIGDILVSVDIINSQAEYLGHSYERELGFLVVHGFLHLNGYDHMLGDAEEKEMFD 147 Query: 154 LERSILEDLGIN 165 L+R IL++ G+ Sbjct: 148 LQREILDNYGLK 159 >gi|306819834|ref|ZP_07453488.1| possible metal-dependent hydrolase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552081|gb|EFM40018.1| possible metal-dependent hydrolase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 158 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 65/136 (47%), Gaps = 9/136 (6%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K +S + +N E+SL FTD+ I +N EYR ID T+VLSFP Sbjct: 23 IEKVISECEDEEGLNFDN--EISLTFTDNENIRQINKEYRDIDDKTDVLSFPMYEIEDLE 80 Query: 96 CSSL-------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 LGDIV++ E + +A G FE + +LI H HL+GYDH+ D + Sbjct: 81 EEKKSKSKNLKPLGDIVISMEQADEQAKQFGHSFEREVCYLICHSMFHLMGYDHMTDDEK 140 Query: 149 CVMEGLERSILEDLGI 164 +M E I+ L I Sbjct: 141 KIMREKEEKIMTKLNI 156 >gi|182418401|ref|ZP_02949695.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237666831|ref|ZP_04526816.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377783|gb|EDT75327.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237658030|gb|EEP55585.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 168 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 19/158 (12%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +I + E K + + + E E+SL+F D+ I +N E R ID+ T+VL Sbjct: 10 KIEVDNRLEEELKKVIEFALKEEEV--EIPCEVSLLFVDNEEIREINNETRNIDRETDVL 67 Query: 85 SFPT----------------AFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 SFP F+ SD L+LGDIVL+ E ++ FE Sbjct: 68 SFPMLDYDNKKIFKEMYKGYEFSQSDFDGEELVLGDIVLSLEKALEQSLEFNHSFEREAS 127 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +L++H LHLLGYDH++++D +M E IL +L I Sbjct: 128 YLVVHSVLHLLGYDHMEEEDKVIMRKREEEILNELNIT 165 >gi|291545856|emb|CBL18964.1| conserved hypothetical protein TIGR00043 [Ruminococcus sp. SR1/5] Length = 164 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 17/158 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVE--LSLVFTDSHRIETLNFEYRGIDKPTN 82 E + +A S + K +++ + ++LV TD+ I+ +N E+R I PT+ Sbjct: 6 EYETDQELGIDYAALASQVADKVLEMEKCPYDGQVNLVLTDNEEIKRVNTEFRNIQAPTD 65 Query: 83 VLSFPTAFASSD---------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 VLSFP + L+LGDI+++ + +A G Sbjct: 66 VLSFPMIPFETPADYSVVEEDESYFDLDSDELLLGDIMISVPKVFAQAEEYGHSVTREFC 125 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L+ H LHLLGYDH+ + +A VME + + L++LGIN Sbjct: 126 FLVAHSMLHLLGYDHMTEDEAKVMEAKQAAALKELGIN 163 >gi|58040435|ref|YP_192399.1| hypothetical protein GOX2007 [Gluconobacter oxydans 621H] gi|62901405|sp|Q5FPF3|RRMF_GLUOX RecName: Full=Probable rRNA maturation factor gi|58002849|gb|AAW61743.1| Hypothetical protein GOX2007 [Gluconobacter oxydans 621H] Length = 168 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I +E+A W + E +A+ + +G S++ ++ LN Sbjct: 11 DIIIEDARWRASVPG---TERAIRRALVAVARQGGPDFTQSPAPSILLATDRIVKRLNAR 67 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +R +KPTNVL+F + S + GDIVL YE + EA + HL HL++HG Sbjct: 68 FRDKNKPTNVLTF-------EPLSPMHGGDIVLGYETVRREAAAARRSLRAHLSHLVVHG 120 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL GYDH +A MEG+E L LG DP+ Sbjct: 121 ALHLAGYDHHHPGEAREMEGIETRTLRSLGFGDPWR 156 >gi|119025739|ref|YP_909584.1| putative metalloprotease [Bifidobacterium adolescentis ATCC 15703] gi|145558837|sp|A1A1B9|RRMF_BIFAA RecName: Full=Probable rRNA maturation factor gi|118765323|dbj|BAF39502.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 181 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP + M LGDIVL + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGGTEMEGVLGDIVLCPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|118443989|ref|YP_878555.1| metalloprotease [Clostridium novyi NT] gi|145572747|sp|A0Q1Q3|RRMF_CLONN RecName: Full=Probable rRNA maturation factor gi|118134445|gb|ABK61489.1| conserved hypothetical protein [Clostridium novyi NT] Length = 166 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 24/165 (14%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 ++ + DE L TL E++ + E+S++ D+ I+ +N E R I Sbjct: 8 QDKIKIDEKTLNTLDEIIKYALKEEEVYVN-------TEVSVILIDNDTIKEINKETRDI 60 Query: 78 DKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEIIEIEANVLGK 120 DK T+VLSFP L+LGDIVL+ E E ++ G Sbjct: 61 DKVTDVLSFPMLDYPKGKTYKEVYKDYEFDASYLDEGELVLGDIVLSLERAEEQSKEFGH 120 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + +L IH LHLLGYDH++D + +M E IL I Sbjct: 121 SFLREVCYLTIHSVLHLLGYDHMEDDEKAIMRKREEEILNKFSIK 165 >gi|15673068|ref|NP_267242.1| putative metalloprotease [Lactococcus lactis subsp. lactis Il1403] gi|281491585|ref|YP_003353565.1| hypothetical protein LLKF_1113 [Lactococcus lactis subsp. lactis KF147] gi|29428253|sp|Q9CGL0|RRMF_LACLA RecName: Full=Probable rRNA maturation factor gi|12724042|gb|AAK05184.1|AE006341_3 hypothetical protein L94534 [Lactococcus lactis subsp. lactis Il1403] gi|281375303|gb|ADA64816.1| Hypothetical protein LLKF_1113 [Lactococcus lactis subsp. lactis KF147] gi|326406636|gb|ADZ63707.1| Putative metalloprotease [Lactococcus lactis subsp. lactis CV56] Length = 162 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 22/169 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +T + FA NL + E+S+ F D+ R L Sbjct: 1 MYVELVDETGQVPSEIIEQTKEVLAFAAKKLNL--------KESTEMSVTFVDNARSHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS--------------LMLGDIVLAYEIIEIEAN 116 N +YR D+PT+V+S S+ +G++ ++ + +A Sbjct: 53 NLQYRETDRPTDVISLEYKPDESEFFFDEDMELPEELLEEMDPFIGELFISIDKAAEQAA 112 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 113 DYGHSIEREYGWLAVHGFLHINGYDHYTPEEESEMFGLQEEILTAYGLT 161 >gi|308189661|ref|YP_003922592.1| transcriptional regulator [Mycoplasma fermentans JER] gi|319776821|ref|YP_004136472.1| putative metalloprotease [Mycoplasma fermentans M64] gi|307624403|gb|ADN68708.1| putative transcriptional regulator [Mycoplasma fermentans JER] gi|318037896|gb|ADV34095.1| Putative metalloprotease [Mycoplasma fermentans M64] Length = 151 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 3/136 (2%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L E + + + NL + F V + + T++ I+ LN EYR D PT++LSF Sbjct: 15 LFEKEYKQILENLAKE--FGLNQTVSVDVTITNNDEIQKLNKEYRNKDYPTDILSFGLED 72 Query: 91 AS-SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + LG++V+++E +E +A G +L HG +HL+GYDH + + Sbjct: 73 WELFENMPIYPLGELVISHEKVEAQAQEFGHSIRREYCYLFAHGLIHLMGYDHETEVERA 132 Query: 150 VMEGLERSILEDLGIN 165 M L I E L I+ Sbjct: 133 EMNKLVDLIFEPLKIS 148 >gi|212716038|ref|ZP_03324166.1| hypothetical protein BIFCAT_00950 [Bifidobacterium catenulatum DSM 16992] gi|212661405|gb|EEB21980.1| hypothetical protein BIFCAT_00950 [Bifidobacterium catenulatum DSM 16992] Length = 181 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 96 QQALAAGHSTMEEMMLLTIHGILHLLGYDHATPEQERQMFGLQRQLL 142 >gi|300310056|ref|YP_003774148.1| metal-dependent hydrolase [Herbaspirillum seropedicae SmR1] gi|300072841|gb|ADJ62240.1| metal-dependent hydrolase protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 13/163 (7%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +P+ L ++V+ + DE +T+ + + V + +L+L F S Sbjct: 1 MPKHKLTLSVQ---YADERLKKTITTTLLRRWVQAALFA-------PAQLTLRFVGSEEG 50 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 LN +YRG D TNVL+F + DI+ +++E EA K E H Sbjct: 51 RDLNRDYRGKDYATNVLTFAYTEDEDSEVTEA---DIIFCTDVLEKEAAEQKKSVEEHTA 107 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 HL++HG LH GYDH DD++A ME LE IL LG +PY Sbjct: 108 HLVVHGVLHAQGYDHEDDEEADEMEALETEILAGLGYANPYAA 150 >gi|227548791|ref|ZP_03978840.1| metalloprotease [Corynebacterium lipophiloflavum DSM 44291] gi|227079121|gb|EEI17084.1| metalloprotease [Corynebacterium lipophiloflavum DSM 44291] Length = 187 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVL 106 E+++ D + L+ + ++ PT+V+SFP + G MLGDI+L Sbjct: 35 DTEVTVTLVDEPTMADLHVRWMDLEGPTDVMSFPMDELTPGGGRPDAAQPGPAMLGDIIL 94 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +A + G + + L L +HG LHLLGYDHV +D M L+ IL D Sbjct: 95 CPAFDRRQAEIAGHDLGHELALLTVHGVLHLLGYDHVAPEDEREMFSLQNEILADW 150 >gi|213965812|ref|ZP_03394004.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213951571|gb|EEB62961.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length = 177 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 17/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ +E L + G ELS+ D IE L Sbjct: 1 MSIEVFNESGQGVNEESLIDVARYAL----------GRLDVHPAAELSIHIVDLKTIEDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + + PT+V+SFP + MLGDIVL E +A G Sbjct: 51 HVRWLDLPGPTDVMSFPMDELTPGSGRPDAASPGPAMLGDIVLCPEFAAGQAERAGHPLS 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + LV L +HG LHLLGYDHV ++ M L+ +L D Sbjct: 111 HELVLLTVHGVLHLLGYDHVTAEEERQMFSLQNGLLADW 149 >gi|218189024|gb|EEC71451.1| hypothetical protein OsI_03674 [Oryza sativa Indica Group] Length = 593 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 5/145 (3%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N +I L L + + +++ G + K VE+S++ + + I+ LN E+RG D Sbjct: 138 NVPMAMKIALDGLLDSNYKTRDTSISDVGRYDK---VEVSVLLCNDNFIQNLNKEWRGED 194 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 +LS D LMLGDIV++ E +A G + + L + G L LL Sbjct: 195 SCIEMLSMSQYIPDLD-VPILMLGDIVISVETAARQAEERGHTLLDEVRILAVRGILRLL 253 Query: 139 GYDHVD-DKDACVMEGLERSILEDL 162 G+DH D+ A ME E+ IL+ L Sbjct: 254 GFDHQTSDESAVEMEKEEQLILKSL 278 >gi|255656420|ref|ZP_05401829.1| hypothetical protein CdifQCD-2_12149 [Clostridium difficile QCD-23m63] gi|296450133|ref|ZP_06891894.1| metal-dependent hydrolase [Clostridium difficile NAP08] gi|296878514|ref|ZP_06902519.1| metal-dependent hydrolase [Clostridium difficile NAP07] gi|296260896|gb|EFH07730.1| metal-dependent hydrolase [Clostridium difficile NAP08] gi|296430321|gb|EFH16163.1| metal-dependent hydrolase [Clostridium difficile NAP07] Length = 153 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 9/150 (6%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 ++ L E L + +++ Y ++ E+SL F D+ I LN EYRG+ Sbjct: 9 QDKLEVSEELLEKIKDIILE-------CLDYEGYDDNYEVSLSFVDNKEIHELNREYRGV 61 Query: 78 DKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 D+ T+VLSFP + LGDIV++ E ++ FE + LI H Sbjct: 62 DRVTDVLSFPLLSDDFEDVELEEESLGDIVVSLERALEQSIEYNHSFEREVCFLICHSMF 121 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HLLGYDH D++ M E IL L I Sbjct: 122 HLLGYDHDTDENTKEMREKEEHILNKLNIT 151 >gi|242061044|ref|XP_002451811.1| hypothetical protein SORBIDRAFT_04g008060 [Sorghum bicolor] gi|241931642|gb|EES04787.1| hypothetical protein SORBIDRAFT_04g008060 [Sorghum bicolor] Length = 457 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 16/149 (10%) Query: 10 RLDLQIAVENALWGDEI------HLRTLCEVVFAKAVSNLISKGYFVKENIV-------- 55 L +QI +E AL D LRT A+++L Y ++ V Sbjct: 93 ELSVQIGIEEALPDDPEILGIAETLRTDVGKAVKLALNDLEGSDYITRDPSVCNVNKYAS 152 Query: 56 -ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+SL+ D I LN E+R D T+VLS D L LGDIV++ E + Sbjct: 153 IEVSLLLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPELD-IPILQLGDIVISVETARRQ 211 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 A G + + L++HG LHLLG+DH Sbjct: 212 AEERGHTLLDEIRILMVHGLLHLLGFDHE 240 >gi|153953547|ref|YP_001394312.1| metalloprotease [Clostridium kluyveri DSM 555] gi|219854169|ref|YP_002471291.1| hypothetical protein CKR_0826 [Clostridium kluyveri NBRC 12016] gi|189040636|sp|A5N6N3|RRMF_CLOK5 RecName: Full=Probable rRNA maturation factor gi|254806620|sp|B9E052|RRMF_CLOK1 RecName: Full=Probable rRNA maturation factor gi|146346428|gb|EDK32964.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219567893|dbj|BAH05877.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 164 Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 19/155 (12%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+I + E + ++ + + E+S+VF D+ I+ +N E R ID+ T+V Sbjct: 9 DKIEVTDKLEKIVTSSIECALKEEKVNFP--CEISVVFVDNENIKDINRENRNIDRVTDV 66 Query: 84 LSFPTAFASS-----------------DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LSFP +L+LGDIV++ E E ++ G F Sbjct: 67 LSFPMLEYPESKVFKEVYLNYKFPEYDMNDGNLVLGDIVVSLEKCEEQSREFGHSFFRET 126 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +LI+H LHLLGYDH +D D +M E IL+ Sbjct: 127 CYLIVHSVLHLLGYDHTEDSDKKIMREREEYILKK 161 >gi|307293144|ref|ZP_07572990.1| protein of unknown function UPF0054 [Sphingobium chlorophenolicum L-1] gi|306881210|gb|EFN12426.1| protein of unknown function UPF0054 [Sphingobium chlorophenolicum L-1] Length = 166 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 6/162 (3%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++AV + + L + A+ + + E + E+++ T + LN Sbjct: 2 IEVAVLHEQGWPDTDWELLAQRAVVAAIMHSPYAAFAADEALYEVAVKLTSDEEVHQLNR 61 Query: 73 EYRGIDKPTNVLSFPT------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 YR DKPTNVLSFP ++ ++LGDIVLA + EA G +H Sbjct: 62 AYRDKDKPTNVLSFPMVQADLLEATANTDDGEVILGDIVLAEGVCAAEAAEKGISVADHA 121 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 HLI+HG HLLGYDH++D +A ME LE L LGI+DPY Sbjct: 122 THLIVHGTFHLLGYDHMEDAEAEAMEALETQSLVSLGISDPY 163 >gi|253681848|ref|ZP_04862645.1| conserved hypothetical protein YbeY [Clostridium botulinum D str. 1873] gi|253561560|gb|EES91012.1| conserved hypothetical protein YbeY [Clostridium botulinum D str. 1873] Length = 166 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 24/165 (14%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 ++ + DE L T+ E++ N K VK N E+S++F D++ I+ +N E R I Sbjct: 8 QDKINIDEKILETVKEII------NYTLKEEEVKVN-TEVSVIFIDNNTIKEINKETRDI 60 Query: 78 DKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEIIEIEANVLGK 120 DK T+VLSFP L+LGDIVL+ E E ++ Sbjct: 61 DKVTDVLSFPMLDYPQGKVYKDTYKDYEFDASYLDEGELVLGDIVLSLEKAEEQSTEFRH 120 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + +L +H LHLLGYDH++D D M E ILE I Sbjct: 121 SFLREVCYLTVHSVLHLLGYDHMEDDDKVRMRKREEEILERFSIT 165 >gi|153816465|ref|ZP_01969133.1| hypothetical protein RUMTOR_02718 [Ruminococcus torques ATCC 27756] gi|145846207|gb|EDK23125.1| hypothetical protein RUMTOR_02718 [Ruminococcus torques ATCC 27756] Length = 160 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 21/154 (13%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 R + E+V ++ Y E+SL+ T I+ +N R ID+ T+VLSF Sbjct: 12 DARKIAELVIETSLD------YVKCPYETEVSLLLTTDEEIKEINRMQRQIDRATDVLSF 65 Query: 87 PTAFASSDG---------------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 P A + G LMLGDIV++ + + +A G LI Sbjct: 66 PMADYETPGDFSHLDEDAGLFHPDTGELMLGDIVISVDKVFEQAEEYGHSLLREYAFLIA 125 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 H LHL GYDH+++ + ME ++ I+E + I Sbjct: 126 HSMLHLFGYDHMEEVERKEMEMHQKKIMELVNIT 159 >gi|170741365|ref|YP_001770020.1| hypothetical protein M446_3180 [Methylobacterium sp. 4-46] gi|168195639|gb|ACA17586.1| protein of unknown function UPF0054 [Methylobacterium sp. 4-46] Length = 159 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 85/159 (53%), Gaps = 10/159 (6%) Query: 12 DLQIAVENALWGDEI-HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++ + +E+ W I L A++ L VE+S++ TD ++ L Sbjct: 4 EIDVVLEDERWEAAIPDLGPFVRRAVEAALAILPPAE------AVEVSVLLTDDEAVQEL 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +RG DKPTNVLSFP A G + LGD+VLAY+ + E+ K +HL HL+ Sbjct: 58 NRTWRGKDKPTNVLSFPAGHA--HGGAPRPLGDVVLAYDTMLRESGEQSKPLGHHLAHLL 115 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 +HG LHLLG DH + +A ME LE + L LG+ DPY Sbjct: 116 VHGTLHLLGQDHETGEAEAEAMEALEAAALARLGVPDPY 154 >gi|113866555|ref|YP_725044.1| unkown domain/putative metalloprotease fusion protein [Ralstonia eutropha H16] gi|113525331|emb|CAJ91676.1| diacylglycerol kinase [Ralstonia eutropha H16] Length = 248 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L++ ++N + + + + + + L++ F D TLN Sbjct: 99 LELEIQNGD-----GVGKRAGLPPRRKIETWVKSALYADAA---LTIRFVDEEEGRTLNR 150 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 YRG D TNVL+F A D + GDIVL ++E EA K E H HLI+H Sbjct: 151 TYRGKDYATNVLTFAYAENEEDPVT----GDIVLCCPVVETEAREQRKPLEAHYAHLIVH 206 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 G LH GY+H +D +A ME +E L+ LG DPY+ D Sbjct: 207 GVLHAQGYEHEEDAEAEEMEAIETETLQALGYADPYQGD 245 >gi|168179379|ref|ZP_02614043.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum NCTC 2916] gi|182669701|gb|EDT81677.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum NCTC 2916] Length = 166 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 17/128 (13%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSD-GC 96 E+S+VF D++ I+ +N +YR IDK T+VLSFP F SD Sbjct: 37 DYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEKGEVFKDIYLNYEFDESDLDE 96 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +L+LGDI L+ E E ++ G F +L IH LHLLGYDH+++ + +M E Sbjct: 97 GNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREE 156 Query: 157 SILEDLGI 164 IL+ + Sbjct: 157 EILKSFNL 164 >gi|153938871|ref|YP_001392225.1| putative metalloprotease [Clostridium botulinum F str. Langeland] gi|170757065|ref|YP_001782581.1| putative metalloprotease [Clostridium botulinum B1 str. Okra] gi|166228940|sp|A7GHG5|RRMF_CLOBL RecName: Full=Probable rRNA maturation factor gi|229553944|sp|B1ILL2|RRMF_CLOBK RecName: Full=Probable rRNA maturation factor gi|152934767|gb|ABS40265.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum F str. Langeland] gi|169122277|gb|ACA46113.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum B1 str. Okra] gi|295320223|gb|ADG00601.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum F str. 230613] Length = 166 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 17/128 (13%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSD-GC 96 E+S+VF D++ I+ +N +YR IDK T+VLSFP F SD Sbjct: 37 DYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEEGKVFKDIYLNYEFDESDLDE 96 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +L+LGDI L+ E E ++ G F +L IH LHLLGYDH+++ + +M E Sbjct: 97 GNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREE 156 Query: 157 SILEDLGI 164 IL+ + Sbjct: 157 EILKSFNL 164 >gi|256825018|ref|YP_003148978.1| hypothetical protein Ksed_11740 [Kytococcus sedentarius DSM 20547] gi|256688411|gb|ACV06213.1| conserved hypothetical protein TIGR00043 [Kytococcus sedentarius DSM 20547] Length = 166 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ VE+ D + + EL + F D+ IE L Sbjct: 1 MTIEVLVEDDPLTDPDDVVAAAQFAMDT----------LHVNPAAELCIRFVDAAAIEVL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP +LGDIVL + +A+ LG L Sbjct: 51 HEQWMDLAGPTDVMSFPMDELRPGTPERPSEPGVLGDIVLCPTVAAEQASRLGHPVGEEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L +HG LHLLGYDH D D M L+ +L Sbjct: 111 LMLTVHGVLHLLGYDHADPDDEREMFTLQAELLTAY 146 >gi|118462943|ref|YP_881245.1| metalloprotease [Mycobacterium avium 104] gi|254774751|ref|ZP_05216267.1| putative metalloprotease [Mycobacterium avium subsp. avium ATCC 25291] gi|145572765|sp|A0QEA7|RRMF_MYCA1 RecName: Full=Probable rRNA maturation factor gi|118164230|gb|ABK65127.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 177 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V AK N ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSEAELISVARFVIAKMDVN----------PAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAADQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEKEMFALQDRLLEEW 148 >gi|15609504|ref|NP_216883.1| putative metalloprotease [Mycobacterium tuberculosis H37Rv] gi|31793544|ref|NP_856037.1| putative metalloprotease [Mycobacterium bovis AF2122/97] gi|121638246|ref|YP_978470.1| putative metalloprotease [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662199|ref|YP_001283722.1| putative metalloprotease [Mycobacterium tuberculosis H37Ra] gi|148823570|ref|YP_001288324.1| putative metalloprotease [Mycobacterium tuberculosis F11] gi|224990740|ref|YP_002645427.1| hypothetical protein JTY_2375 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798555|ref|YP_003031556.1| hypothetical protein TBMG_01608 [Mycobacterium tuberculosis KZN 1435] gi|289443888|ref|ZP_06433632.1| metalloprotease [Mycobacterium tuberculosis T46] gi|289448009|ref|ZP_06437753.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289553843|ref|ZP_06443053.1| hypothetical protein TBXG_01593 [Mycobacterium tuberculosis KZN 605] gi|289570510|ref|ZP_06450737.1| hypothetical protein TBJG_00877 [Mycobacterium tuberculosis T17] gi|289575061|ref|ZP_06455288.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289746145|ref|ZP_06505523.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289750966|ref|ZP_06510344.1| hypothetical protein TBDG_01176 [Mycobacterium tuberculosis T92] gi|289754472|ref|ZP_06513850.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289758490|ref|ZP_06517868.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289762533|ref|ZP_06521911.1| hypothetical protein TBIG_01770 [Mycobacterium tuberculosis GM 1503] gi|308232114|ref|ZP_07414969.2| hypothetical protein TMAG_02926 [Mycobacterium tuberculosis SUMu001] gi|308369698|ref|ZP_07418742.2| hypothetical protein TMBG_00911 [Mycobacterium tuberculosis SUMu002] gi|308370990|ref|ZP_07423477.2| hypothetical protein TMCG_00467 [Mycobacterium tuberculosis SUMu003] gi|308372215|ref|ZP_07427838.2| hypothetical protein TMDG_00845 [Mycobacterium tuberculosis SUMu004] gi|308373392|ref|ZP_07432143.2| hypothetical protein TMEG_02734 [Mycobacterium tuberculosis SUMu005] gi|308374561|ref|ZP_07436540.2| hypothetical protein TMFG_01331 [Mycobacterium tuberculosis SUMu006] gi|308375864|ref|ZP_07445354.2| hypothetical protein TMGG_00928 [Mycobacterium tuberculosis SUMu007] gi|308376991|ref|ZP_07440782.2| hypothetical protein TMHG_01561 [Mycobacterium tuberculosis SUMu008] gi|308377993|ref|ZP_07481176.2| hypothetical protein TMIG_01044 [Mycobacterium tuberculosis SUMu009] gi|308379183|ref|ZP_07485405.2| hypothetical protein TMJG_00637 [Mycobacterium tuberculosis SUMu010] gi|308380346|ref|ZP_07489619.2| hypothetical protein TMKG_00630 [Mycobacterium tuberculosis SUMu011] gi|308404861|ref|ZP_07494158.2| hypothetical protein TMLG_02116 [Mycobacterium tuberculosis SUMu012] gi|2078032|emb|CAB08472.1| UNKNOWN [Mycobacterium tuberculosis H37Rv] gi|31619137|emb|CAD97249.1| FUNCTION UNKNOWN [Mycobacterium bovis AF2122/97] gi|121493894|emb|CAL72369.1| Function unknown [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148506351|gb|ABQ74160.1| hypothetical protein MRA_2391 [Mycobacterium tuberculosis H37Ra] gi|148722097|gb|ABR06722.1| hypothetical protein TBFG_12393 [Mycobacterium tuberculosis F11] gi|224773853|dbj|BAH26659.1| hypothetical protein JTY_2375 [Mycobacterium bovis BCG str. Tokyo 172] gi|253320058|gb|ACT24661.1| hypothetical protein TBMG_01608 [Mycobacterium tuberculosis KZN 1435] gi|289416807|gb|EFD14047.1| metalloprotease [Mycobacterium tuberculosis T46] gi|289420967|gb|EFD18168.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289438475|gb|EFD20968.1| hypothetical protein TBXG_01593 [Mycobacterium tuberculosis KZN 605] gi|289539492|gb|EFD44070.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289544264|gb|EFD47912.1| hypothetical protein TBJG_00877 [Mycobacterium tuberculosis T17] gi|289686673|gb|EFD54161.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289691553|gb|EFD58982.1| hypothetical protein TBDG_01176 [Mycobacterium tuberculosis T92] gi|289695059|gb|EFD62488.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289710039|gb|EFD74055.1| hypothetical protein TBIG_01770 [Mycobacterium tuberculosis GM 1503] gi|289714054|gb|EFD78066.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|308214951|gb|EFO74350.1| hypothetical protein TMAG_02926 [Mycobacterium tuberculosis SUMu001] gi|308326727|gb|EFP15578.1| hypothetical protein TMBG_00911 [Mycobacterium tuberculosis SUMu002] gi|308330140|gb|EFP18991.1| hypothetical protein TMCG_00467 [Mycobacterium tuberculosis SUMu003] gi|308334001|gb|EFP22852.1| hypothetical protein TMDG_00845 [Mycobacterium tuberculosis SUMu004] gi|308337782|gb|EFP26633.1| hypothetical protein TMEG_02734 [Mycobacterium tuberculosis SUMu005] gi|308341463|gb|EFP30314.1| hypothetical protein TMFG_01331 [Mycobacterium tuberculosis SUMu006] gi|308344949|gb|EFP33800.1| hypothetical protein TMGG_00928 [Mycobacterium tuberculosis SUMu007] gi|308349260|gb|EFP38111.1| hypothetical protein TMHG_01561 [Mycobacterium tuberculosis SUMu008] gi|308353880|gb|EFP42731.1| hypothetical protein TMIG_01044 [Mycobacterium tuberculosis SUMu009] gi|308357825|gb|EFP46676.1| hypothetical protein TMJG_00637 [Mycobacterium tuberculosis SUMu010] gi|308361771|gb|EFP50622.1| hypothetical protein TMKG_00630 [Mycobacterium tuberculosis SUMu011] gi|308365393|gb|EFP54244.1| hypothetical protein TMLG_02116 [Mycobacterium tuberculosis SUMu012] gi|323719034|gb|EGB28182.1| hypothetical protein TMMG_01659 [Mycobacterium tuberculosis CDC1551A] gi|326903983|gb|EGE50916.1| hypothetical protein TBPG_01872 [Mycobacterium tuberculosis W-148] gi|328458323|gb|AEB03746.1| hypothetical protein TBSG_01617 [Mycobacterium tuberculosis KZN 4207] Length = 182 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + E L ++ V AK N ELS++ D+ + L Sbjct: 6 MSIEVANESGIDVSEAELVSVARFVIAKMDVN----------PCAELSMLLLDTAAMADL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G + Sbjct: 56 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAEQAAAAGHSLGH 115 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 116 ELALLTIHGVLHLLGYDHAEPDEEKEMFALQDRLLEEW 153 >gi|300853994|ref|YP_003778978.1| hypothetical protein CLJU_c08080 [Clostridium ljungdahlii DSM 13528] gi|300434109|gb|ADK13876.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 164 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 17/128 (13%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSDGCS 97 E+S++F D+ I+ +N E R IDK T+VLSFP F SD Sbjct: 37 PCEISVIFIDNEEIKNINRENRNIDKVTDVLSFPMLEYPEGSVFKQVYVNHEFEESDMDD 96 Query: 98 S-LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 L+LGDI L+ E E +A G F +L +H LHLLGYDH+++ D +M E Sbjct: 97 GNLVLGDIALSLERAEEQAQEFGHSFLREACYLTVHSVLHLLGYDHMEESDKKIMRQREE 156 Query: 157 SILEDLGI 164 IL + Sbjct: 157 EILSGFKL 164 >gi|310828432|ref|YP_003960789.1| hypothetical protein ELI_2845 [Eubacterium limosum KIST612] gi|308740166|gb|ADO37826.1| hypothetical protein ELI_2845 [Eubacterium limosum KIST612] Length = 156 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 14/159 (8%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDL+I + + D + E + + E+S I+ Sbjct: 4 ELDLEIDNRSGVELDASVYEKVEEYIIITLQQENVLV-------PCEISFSLVIPEEIQE 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCS-------SLMLGDIVLAYEIIEIEANVLGKEF 122 LN EYR IDK T+VLSFP D +MLGDIV++ +A G Sbjct: 57 LNAEYRNIDKETDVLSFPMLEFPEDEDMLTYETGIPVMLGDIVISTTRAAEQAEAYGHSL 116 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E + +L +H LHLLGYDH+++ + VM E++I+ D Sbjct: 117 EREICYLSVHSVLHLLGYDHMEEDEKRVMRAREKAIMGD 155 >gi|262370521|ref|ZP_06063846.1| metal-dependent hydrolase [Acinetobacter johnsonii SH046] gi|262314321|gb|EEY95363.1| metal-dependent hydrolase [Acinetobacter johnsonii SH046] Length = 159 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 8/161 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + L ++++ E+ L+ K V ++ + ++ E+ + D L Sbjct: 1 MKLSLSLQQDFQAPELVLK---RGYLKKVVETVLR--HIGTQSNCEIGIACVDHDESHKL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N EYRG DK TNVLSFP+ S +GD+V+ ++ +EA K H H Sbjct: 56 NLEYRGKDKSTNVLSFPSDLPDEMAQILDSFPIGDLVICIPVVLLEAKEQNKAPLTHFTH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPY 168 +++HG LHL+GYDH + DA MEG+E IL LG +PY Sbjct: 116 MLVHGTLHLMGYDHETSEADAEEMEGIEIEILAKLGFENPY 156 >gi|256847124|ref|ZP_05552570.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715788|gb|EEU30763.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 157 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 9/141 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + A+ + + +KEN E+SL F + I+ LN +YRG+D+ T+V+SF Sbjct: 17 QKQLAEKLLAFAAHQLGLKEND-EMSLTFVRNPEIKALNAKYRGVDRATDVISFAMGDGD 75 Query: 93 SDGCS--------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + LGD+ ++ + ++ +A LG + L L++HGFLHL GYDH Sbjct: 76 EEIVMDDAMAAELPHDLGDLFISVDKVKEQALFLGHSADRELGFLVVHGFLHLNGYDHEQ 135 Query: 145 DKDACVMEGLERSILEDLGIN 165 D M L+ IL+D G+ Sbjct: 136 PDDEKKMFSLQEKILDDYGLA 156 >gi|254519867|ref|ZP_05131923.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226913616|gb|EEH98817.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 166 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 17/130 (13%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------------- 94 E ++SL+F D+ I +N E R ID+ T+VLSFP Sbjct: 35 ECQYQISLLFVDNEEIREINNETRNIDRATDVLSFPMLDFEDKKVFNEMYLNYDFDETFK 94 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 L+LGD+VL+ E ++ G +E + +L++H LHLLGYDH+++ D M Sbjct: 95 DGDELILGDMVLSLERALEQSEEYGHSYEREVSYLVVHSILHLLGYDHMEEDDKKRMRKR 154 Query: 155 ERSILEDLGI 164 E IL L I Sbjct: 155 EEEILNKLQI 164 >gi|170759303|ref|YP_001788261.1| putative metalloprotease [Clostridium botulinum A3 str. Loch Maree] gi|238688538|sp|B1KZM6|RRMF_CLOBM RecName: Full=Probable rRNA maturation factor gi|169406292|gb|ACA54703.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum A3 str. Loch Maree] Length = 166 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 19/152 (12%) Query: 32 CEVVFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + F + +I ++ E+S++F D++ I+ +N +YR IDK T+VLSFP Sbjct: 13 VDEEFENKIKEIIDYALKEEKVNIDYEISVIFIDNNSIKEINKDYRNIDKATDVLSFPML 72 Query: 89 ---------------AFASSD-GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 F SD +L+LGDI L+ E E ++ G F +L IH Sbjct: 73 DYEEGEVFKDVYLNYEFDESDLDEGNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIH 132 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHLLGYDH+++ + +M E IL+ + Sbjct: 133 SVLHLLGYDHMEEDEKAIMRQREEEILKSFNL 164 >gi|118618894|ref|YP_907226.1| putative metalloprotease [Mycobacterium ulcerans Agy99] gi|183983657|ref|YP_001851948.1| metal-dependent hydrolase [Mycobacterium marinum M] gi|145558814|sp|A0PTT6|RRMF_MYCUA RecName: Full=Probable rRNA maturation factor gi|238690927|sp|B2HLB7|RRMF_MYCMM RecName: Full=Probable rRNA maturation factor gi|118571004|gb|ABL05755.1| conserved hypothetical metal-dependent hydrolase [Mycobacterium ulcerans Agy99] gi|183176983|gb|ACC42093.1| conserved hypothetical metal-dependent hydrolase [Mycobacterium marinum M] Length = 178 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V K N ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSETELVSVARFVIGKMDVN----------PGAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAEQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEKEMFALQDRLLEEW 148 >gi|237747923|ref|ZP_04578403.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379285|gb|EEO29376.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 166 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 25/168 (14%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + DE TL + V + ++L F D+ TLN EYR D Sbjct: 6 QYPDERLKTTLTRPKLRRWVQAALQM-------PAVITLRFVDAEEGRTLNREYREKDYA 58 Query: 81 TNVLSFPTAFASS------------------DGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 TNVL+FP D + DIVL +++E EA GK Sbjct: 59 TNVLTFPYDDMDEFDLTDAVPSRPEPEADRDDIPEQMAQADIVLCTDVLEKEAKEQGKSL 118 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 E H HL++HG LH GYDH++D++A ME LE+ IL LGI +PYE Sbjct: 119 EAHAAHLVVHGTLHAQGYDHLNDEEAEEMETLEKQILAKLGIANPYED 166 >gi|220909854|ref|YP_002485165.1| hypothetical protein Cyan7425_4494 [Cyanothece sp. PCC 7425] gi|254803919|sp|B8HK54|RRMF_CYAP4 RecName: Full=Probable rRNA maturation factor gi|219866465|gb|ACL46804.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 7425] Length = 169 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 8/163 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQ A ++ I T F + L EL L TD I + Sbjct: 4 DVDLQDAYSSSTAQVPIAAETWL-TWFNRWFELLHPS--LPPACSYELCLRLTDDGEIAS 60 Query: 70 LNFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YR +PT+VL+F + D L LGDIV++ + + ++ Sbjct: 61 LNSFYRQQPQPTDVLAFAALEVEVPRSPPDQTELLHLGDIVISVDTAQRQSLAGQHSLTV 120 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 L L HGFLHLLG+DH D M + +L +G+ +P Sbjct: 121 ELAWLAAHGFLHLLGWDHPDPASLEQMLKQQSILLAAVGLENP 163 >gi|15617041|ref|NP_240254.1| hypothetical protein BU442 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681793|ref|YP_002468179.1| hypothetical protein BUAP5A_435 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682348|ref|YP_002468732.1| hypothetical protein BUAPTUC7_436 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|25403623|pir||D84981 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039106|dbj|BAB13140.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622081|gb|ACL30237.1| hypothetical protein BUAPTUC7_436 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624636|gb|ACL30791.1| hypothetical protein BUAP5A_435 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 111 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 49/107 (45%), Positives = 64/107 (59%), Gaps = 2/107 (1%) Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 D I+ LNF YR +KPTN+LSFP F + +LGD+VL IIE E+ K Sbjct: 2 VDEWEIKKLNFNYRKKNKPTNILSFP--FNKFIKINYKLLGDLVLCKNIIEKESLKYNKS 59 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+H H+ IHG LHLLGYDH ++K+A +ME LE I+ L P+ Sbjct: 60 LESHWAHITIHGTLHLLGYDHQNNKEADIMERLENKIMLSLNYKKPH 106 >gi|329113344|ref|ZP_08242125.1| Putative metalloprotease [Acetobacter pomorum DM001] gi|326697169|gb|EGE48829.1| Putative metalloprotease [Acetobacter pomorum DM001] Length = 179 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 16/156 (10%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +I + + W +H E + +A++ G ++V + LN Sbjct: 37 EILIRDRRWRSYVHNP---EQLVWRALAACSEYGGLPD------TVVLATDREVRELNGR 87 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +RG +PTNVL+F + + GDI+LA E + EA GK +HL HL+IHG Sbjct: 88 HRGKQRPTNVLTF-------EPPPGINGGDIILALETVVREARKAGKPVADHLAHLVIHG 140 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL GYDH +A ME LE +L L + +P++ Sbjct: 141 SLHLAGYDHHHPGEAREMEMLESRLLSRLRVPNPWK 176 >gi|126656865|ref|ZP_01728043.1| hypothetical protein CY0110_01764 [Cyanothece sp. CCY0110] gi|126621703|gb|EAZ92412.1| hypothetical protein CY0110_01764 [Cyanothece sp. CCY0110] Length = 172 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 9/137 (6%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-- 92 F ++L+S Y + EL+L T I++LN +YR ++PT+VL+F T + Sbjct: 38 WFQIWGNSLLS--YLPIASHYELTLRLTGDQEIQSLNAQYRHKNQPTDVLAFATLEENFP 95 Query: 93 -----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + L +GDIV++ E E +A G L L HGFLHLLG+DH D++ Sbjct: 96 KITNQPEFLEPLYIGDIVISIETAEKQAQKEGHTLNRELPWLASHGFLHLLGWDHPDEQS 155 Query: 148 ACVMEGLERSILEDLGI 164 M + ++L+ +G+ Sbjct: 156 LQKMLQQQETLLKIIGL 172 >gi|167755644|ref|ZP_02427771.1| hypothetical protein CLORAM_01159 [Clostridium ramosum DSM 1402] gi|237734392|ref|ZP_04564873.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704583|gb|EDS19162.1| hypothetical protein CLORAM_01159 [Clostridium ramosum DSM 1402] gi|229382622|gb|EEO32713.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 153 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LG 102 + E +ELS + D +I +N EYR ID+ T+V+SF + +G Sbjct: 29 AAKQLGIEEDLELSCILVDDSKIHEINKEYRKIDRATDVISFALEDNEQFYVPGMPRSIG 88 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI ++ + +++A G + + + L HG LHLLG+DH+ ++D M +++SIL+ L Sbjct: 89 DIFISVDHAKVQAEEYGHDLKREMCFLFTHGLLHLLGFDHMIEEDEIQMIAMQKSILDAL 148 Query: 163 GIN 165 I Sbjct: 149 NIT 151 >gi|292669777|ref|ZP_06603203.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648574|gb|EFF66546.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 153 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 7/152 (4%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E +++ + +AV + G E+S+ TD + LN EYR Sbjct: 3 IEIRREPEDLPVPDSDIAAVRRAVETV---GRLYGAEDAEVSVTLTDDAHVHVLNREYRN 59 Query: 77 IDKPTNVLSFPTAFASSDGC----SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +D+PT+VLSF A + ++LGD+V++ E +A G L L +H Sbjct: 60 VDRPTDVLSFALAESEEPEIIGADGGMVLGDLVISLERTAAQAEEYGHSMLRELSFLTVH 119 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G LHLLGYDH+++++ ME +R ++E+LGI Sbjct: 120 GMLHLLGYDHMEEEERLEMEEEQRHVMEELGI 151 >gi|301300991|ref|ZP_07207154.1| translation metalloprotein YbeY [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851407|gb|EFK79128.1| translation metalloprotein YbeY [Lactobacillus salivarius ACS-116-V-Col5a] Length = 159 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E ++ K V K + E+ E+S+ ++ +I + Sbjct: 1 MDLEIFDDTNSVPAE-------KIQLVKDVLEFSGKYLELPED-TEMSVTLMNNEQIHEI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLG 119 N +YRG+DK T+V+SF D +GD++++ + ++ +A LG Sbjct: 53 NLKYRGVDKATDVISFAIEEDDPDELPIILPDYVDFEEPKNIGDMMISMDKVKEQAEYLG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L +HGFLHL GYDH+ +D VM L+R IL+ G+ Sbjct: 113 HSEDRELGFLTVHGFLHLNGYDHMKAEDEKVMFKLQRDILDAYGLK 158 >gi|217967710|ref|YP_002353216.1| protein of unknown function UPF0054 [Dictyoglomus turgidum DSM 6724] gi|217336809|gb|ACK42602.1| protein of unknown function UPF0054 [Dictyoglomus turgidum DSM 6724] Length = 142 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E K + K N ++S+V D +I LN +YRG D PT+VLSF Sbjct: 16 EEDRVKNFVKEVFKKEGFLPNKYDISVVLVDDEKIRELNSKYRGKDTPTDVLSFSL---- 71 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 ++G+I ++ + +I+A K + + L +HG LH+LGYDH +D++ ME Sbjct: 72 GKDPKGRIVGEIYISIDTAKIQAKENNKTLIDEVAFLTLHGLLHILGYDHENDEEYEKME 131 Query: 153 GLERSILEDL 162 E L L Sbjct: 132 -KETKKLISL 140 >gi|296188183|ref|ZP_06856575.1| metalloprotein, YbeY/ UPF0054family [Clostridium carboxidivorans P7] gi|296047309|gb|EFG86751.1| metalloprotein, YbeY/ UPF0054family [Clostridium carboxidivorans P7] Length = 166 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 19/159 (11%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 ++I + E + + + E+S++F D+ +I+ +N E R IDK T+V Sbjct: 9 NKIEISDEIEKNIVSIIEYALQEEKVNIP--CEVSVIFVDNEKIKEINKENRNIDKVTDV 66 Query: 84 LSFPTAFAS-----------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LSFP SL+LGDIVL+ E + ++ F + Sbjct: 67 LSFPMLDYEKGKVFKDTYKDFNFSHVDLDEGSLVLGDIVLSLEKAKEQSLEFNHSFIREV 126 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 V+L IH LHLLGYDH+++ + +M E ILE + Sbjct: 127 VYLTIHSVLHLLGYDHMEEDEKSIMRKREEQILEKFHLT 165 >gi|28211644|ref|NP_782588.1| putative metalloprotease [Clostridium tetani E88] gi|46577461|sp|Q892R9|RRMF_CLOTE RecName: Full=Probable rRNA maturation factor gi|28204086|gb|AAO36525.1| metal-binding protein [Clostridium tetani E88] Length = 167 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 19/153 (12%) Query: 32 CEVVFAKAVSNLISKGYFVKENIV--ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + K ++ +I +E + E+S+++ D+ I+ +N + RGI+K T+VLSFP Sbjct: 13 AQEDLDKLINEIIDYALKKEEVDIGYEISVIYVDNEIIKEINNDTRGINKETDVLSFPML 72 Query: 90 FASSD-----------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +L+LGDIVL+ E ++ F + +L++H Sbjct: 73 EYPKGRVFSESYREYSFGVEYLNEGNLVLGDIVLSLEKALEQSKEYNHSFLREVCYLVVH 132 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LHLLGYDH+D+++ +M E ILE I+ Sbjct: 133 SVLHLLGYDHIDEEEKVIMRKKEEEILESFNIS 165 >gi|162147625|ref|YP_001602086.1| hypothetical protein GDI_1841 [Gluconacetobacter diazotrophicus PAl 5] gi|161786202|emb|CAP55784.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 152 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 7/132 (5%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 A+ ++ + + ++++ + I LN +R +KPTNVL+F D Sbjct: 14 AALVRRTARAAWGGDAPGPVTIMLDNDRAIRRLNARHRDRNKPTNVLTF-------DYPG 66 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 L GDI++A E + EA G+ +HL+HL++HG LHL G+DH +A ME E Sbjct: 67 GLPGGDIMIALETVRREAQAAGRPIRHHLMHLVVHGILHLRGHDHHQAGEARRMEMEEAR 126 Query: 158 ILEDLGINDPYE 169 IL L + +P++ Sbjct: 127 ILGRLSVPNPWK 138 >gi|146296844|ref|YP_001180615.1| hypothetical protein Csac_1839 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166980486|sp|A4XKI9|RRMF_CALS8 RecName: Full=Probable rRNA maturation factor gi|145410420|gb|ABP67424.1| protein of unknown function UPF0054 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 158 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 8/125 (6%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--------SSLM 100 F+ + E+S++ D+ I+ LN YR IDK T+VLSFP + + Sbjct: 33 FMDDENYEISVMIVDNQFIKELNKHYRSIDKETDVLSFPIFEFKNGELQEDIAIVEEEIP 92 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDIV++ E +A G E + +L +H LHLLG+DH++++D +M E +LE Sbjct: 93 LGDIVISIEKAYEQAKEFGHSVEREIAYLTVHSVLHLLGFDHIEEEDRMLMRKYEEMVLE 152 Query: 161 DLGIN 165 +G+ Sbjct: 153 GMGLT 157 >gi|172041012|ref|YP_001800726.1| putative metalloprotease [Corynebacterium urealyticum DSM 7109] gi|171852316|emb|CAQ05292.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 200 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 16/164 (9%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P + +++ E+ WG+ + + ++ + ELS+ D Sbjct: 1 MENPLVSIEVFNESG-WGEINEEELIDVARYTLWTMDV--------HSSAELSIHIVDEE 51 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVL 118 I L+ + + PT+V+SFP S MLGDI+L + +A Sbjct: 52 TIADLHLRWLNLPGPTDVMSFPMDELTPGWGRKDGPPVSPAMLGDIMLCPSFAKGQAERA 111 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 G + L L +HG LHLLG+DHV ++ M ++ +L + Sbjct: 112 GHSLAHELDLLTVHGVLHLLGFDHVTPEEEQQMFSIQNEVLANW 155 >gi|33519779|ref|NP_878611.1| hypothetical protein Bfl316 [Candidatus Blochmannia floridanus] gi|46577400|sp|Q7VRA3|RRMF_BLOFL RecName: Full=Probable rRNA maturation factor gi|33504124|emb|CAD83386.1| predicted metal-dependent hydrolase [Candidatus Blochmannia floridanus] Length = 153 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 2/110 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL++ D + LN+ Y G PTNVLSFP F + +LGDIV+ +IIE E Sbjct: 41 ELTIRIVDIQEMLYLNWYYLGKKYPTNVLSFP--FEPPSEIQTSLLGDIVICKQIIEYEN 98 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + H H+IIHG LHLLGYDH+ D+DA +M +E +I+ LG Sbjct: 99 RKNNIFSDVHWAHMIIHGSLHLLGYDHICDEDAELMNAMELNIIRTLGYK 148 >gi|148380900|ref|YP_001255441.1| putative metalloprotease [Clostridium botulinum A str. ATCC 3502] gi|153933017|ref|YP_001385208.1| putative metalloprotease [Clostridium botulinum A str. ATCC 19397] gi|153936466|ref|YP_001388677.1| putative metalloprotease [Clostridium botulinum A str. Hall] gi|166228924|sp|A7FXK4|RRMF_CLOB1 RecName: Full=Probable rRNA maturation factor gi|166228931|sp|A5I629|RRMF_CLOBH RecName: Full=Probable rRNA maturation factor gi|148290384|emb|CAL84511.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929061|gb|ABS34561.1| metal-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932380|gb|ABS37879.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum A str. Hall] Length = 166 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 17/128 (13%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSD-GC 96 E+S+VF D++ I+ +N +YR IDK T+VLSFP F SD Sbjct: 37 DYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEDGEVFKDIYLNYEFDESDLDE 96 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +L+LGDI L+ E E ++ G F +L IH LHLLGYDH+++ + +M E Sbjct: 97 GNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREE 156 Query: 157 SILEDLGI 164 IL+ + Sbjct: 157 EILKSFNL 164 >gi|296133914|ref|YP_003641161.1| protein of unknown function UPF0054 [Thermincola sp. JR] gi|296032492|gb|ADG83260.1| protein of unknown function UPF0054 [Thermincola potens JR] Length = 153 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 7/146 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +++ + + + ++ + F E+ +V D I LN +YRG+D PT+V Sbjct: 10 EKVEVPPELGETIERVANAVLEQSEFPG---AEVGIVLVDDDYIHQLNKQYRGVDSPTDV 66 Query: 84 LSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 LSF + L+LGD+ ++ E + +A G F + +L HG HLLG Sbjct: 67 LSFALIEDGEEEFFEEEEDLLLGDVFISVERAQNQAEEYGHSFTREMAYLTAHGMFHLLG 126 Query: 140 YDHVDDKDACVMEGLERSILEDLGIN 165 YDH +++ +M E +L L I Sbjct: 127 YDHNTEEERDIMREKEEQVLTGLNIT 152 >gi|317497353|ref|ZP_07955676.1| hypothetical protein HMPREF0996_00656 [Lachnospiraceae bacterium 5_1_63FAA] gi|316895422|gb|EFV17581.1| hypothetical protein HMPREF0996_00656 [Lachnospiraceae bacterium 5_1_63FAA] Length = 170 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 22/169 (13%) Query: 13 LQIAVENALWGD-EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I +EN G+ I + V A+ Y E++L+ TD+ I +N Sbjct: 1 MSIIIENEYEGEINIPYEKIAHEVIEAAID------YVDCPYECEVNLMLTDNETIHAIN 54 Query: 72 FEYRGIDKPTNVLSFPTAFASSD---------------GCSSLMLGDIVLAYEIIEIEAN 116 E R ID+PT+VLSFP A +LGDIV++ + + +A Sbjct: 55 KEQREIDRPTDVLSFPMAEYEEPADFSKIEEDPMAFDPESGEFLLGDIVISMDKVWEQAE 114 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E LI H LHL GYDH+++++ ME + IL Sbjct: 115 NYGHSREREYAFLIAHSMLHLFGYDHMEEEERKDMEKRQEEILTKTKYT 163 >gi|227495126|ref|ZP_03925442.1| metalloprotease [Actinomyces coleocanis DSM 15436] gi|226831578|gb|EEH63961.1| metalloprotease [Actinomyces coleocanis DSM 15436] Length = 169 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E D R + E V A+ + EL+L+F + +E L Sbjct: 1 MTIEVANETEYQVDIDEFRAVVEFVLAQMHVST----------EAELALMFIEPEPMEEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGC----SSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP LGDIV+ + +A G + Sbjct: 51 HIKWMDLPGPTDVMSFPMDELRPGTPGRVTPPGTLGDIVICPTVAAAQALKAGHSAAEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +HG LHLLGYDHV+ ++ VM L+R +L Sbjct: 111 LLLTVHGVLHLLGYDHVEPEEEKVMFELQRKLL 143 >gi|227543020|ref|ZP_03973069.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51866] gi|227181242|gb|EEI62214.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51866] Length = 174 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 18/160 (11%) Query: 11 LDLQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ E+ DE L T+ E + VE+++ D IE Sbjct: 1 MSIEVLNESGNTDVDEKQLSTVAEFALTTMDVH----------PSVEVTITCVDLDTIED 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ + ++ PT+V+SFP + LGDI+L + + +A+ G Sbjct: 51 LHVRWLDLEGPTDVMSFPMDDISSTGGRPDAADPGPAYLGDIILCPDFAQKQADKAGHSL 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLGYDH + M L+ IL+ Sbjct: 111 NHELDLLTVHGCLHLLGYDHAKPNEEQHMFALQNDILKRW 150 >gi|78213952|ref|YP_382731.1| hypothetical protein Syncc9605_2444 [Synechococcus sp. CC9605] gi|123577427|sp|Q3AGV6|RRMF_SYNSC RecName: Full=Probable rRNA maturation factor gi|78198411|gb|ABB36176.1| Protein of unknown function UPF0054 [Synechococcus sp. CC9605] Length = 166 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 66/164 (40%), Gaps = 12/164 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS----------KGYFVKENIVELSL 59 LDL + E L E V+ + + + + + L L Sbjct: 2 ELDLALDREEGALQASEIGDLLDETVWLQQLEHWLQIVCGDESLDCPTLVRSAEELSLGL 61 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--MLGDIVLAYEIIEIEANV 117 F D I LN +R PT+VLSF + D LGDIV++ E +A Sbjct: 62 RFIDDATIADLNSTWRQKTGPTDVLSFAALDDAGDWMEGPSIELGDIVVSLETARRQAQE 121 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 G + L L+ HG LHLLG+DH D+K M L+ +L D Sbjct: 122 QGHSLQQELRWLVSHGLLHLLGWDHPDEKSLATMLALQERLLGD 165 >gi|149194504|ref|ZP_01871600.1| hypothetical protein CMTB2_00634 [Caminibacter mediatlanticus TB-2] gi|149135248|gb|EDM23728.1| hypothetical protein CMTB2_00634 [Caminibacter mediatlanticus TB-2] Length = 137 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + L F+ + VEL + T I+ LN EYR DKPT+VLSFP + + Sbjct: 14 IEKLYEIYNFLTDKDVEL--ILTTDEEIQKLNKEYRNKDKPTDVLSFPL-----EDFPGM 66 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LG IV++ + + EA G ++ + L IHG LHLLGYDH + D M E+ I+ Sbjct: 67 PLGSIVISIDTAKKEAEKFGHSIDDEIKLLFIHGLLHLLGYDH--EVDNGEMREKEKEII 124 Query: 160 EDLGIN 165 E + Sbjct: 125 EKFNLP 130 >gi|225572106|ref|ZP_03780970.1| hypothetical protein RUMHYD_00400 [Blautia hydrogenotrophica DSM 10507] gi|225040440|gb|EEG50686.1| hypothetical protein RUMHYD_00400 [Blautia hydrogenotrophica DSM 10507] Length = 164 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 18/142 (12%) Query: 41 SNLISKGYFVKE---NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-- 95 +NL+++ E V+++LV TD+ I+ +N ++R I+ PT+VLSFP + G Sbjct: 21 ANLVAEKVLDMEGCPYEVQINLVLTDNEEIQRVNQQFRDINAPTDVLSFPMIPFPTPGDY 80 Query: 96 -------------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 L+LGDI+++ +E +A G L+ H LHLLGYDH Sbjct: 81 KILEEEDSYFDLDTGELILGDIMISIPRMETQAQEFGHSQVREFSFLVAHSILHLLGYDH 140 Query: 143 VDDKDACVMEGLERSILEDLGI 164 + K+A VME + LE+L I Sbjct: 141 MTPKEAAVMEAKQSQALEELQI 162 >gi|41408257|ref|NP_961093.1| putative metalloprotease [Mycobacterium avium subsp. paratuberculosis K-10] gi|59799130|sp|Q73XZ9|RRMF_MYCPA RecName: Full=Probable rRNA maturation factor gi|41396612|gb|AAS04476.1| hypothetical protein MAP_2159c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 177 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V AK N ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSEAELISVARFVIAKMDVN----------PAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAADQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEKEMFALQDRLLEEW 148 >gi|226950374|ref|YP_002805465.1| hypothetical protein TIGR00043 [Clostridium botulinum A2 str. Kyoto] gi|254801658|sp|C1FVS9|RRMF_CLOBJ RecName: Full=Probable rRNA maturation factor gi|226841958|gb|ACO84624.1| conserved hypothetical protein TIGR00043 [Clostridium botulinum A2 str. Kyoto] gi|322807265|emb|CBZ04839.1| metal-dependent hydrolase [Clostridium botulinum H04402 065] Length = 166 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 17/128 (13%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----------------AFASSD-GC 96 E+S+VF D++ I+ +N +YR IDK T+VLSFP F SD Sbjct: 37 DYEISVVFIDNNSIKEINKDYRNIDKATDVLSFPMLDYEEGEVFKDIYLNYEFDESDLDE 96 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +L+LGDI L+ E E ++ G F +L IH LHLLGYDH+++ + +M E Sbjct: 97 GNLVLGDIALSLEKAEEQSKEFGHSFLRETCYLTIHSVLHLLGYDHMEEDEKVIMRQREE 156 Query: 157 SILEDLGI 164 IL+ + Sbjct: 157 EILKSFNL 164 >gi|148243345|ref|YP_001228502.1| metal-dependent hydrolase [Synechococcus sp. RCC307] gi|172047894|sp|A5GW90|RRMF_SYNR3 RecName: Full=Probable rRNA maturation factor gi|147851655|emb|CAK29149.1| Predicted metal-dependent hydrolase [Synechococcus sp. RCC307] Length = 160 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 5/152 (3%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++L +A E L A+ + L S +K + L L F D I L Sbjct: 7 IELDLAYLGPDPLGEDRWVELLSSWLAQLQAELPSP---LKADAYSLGLQFCDDAAIAEL 63 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM--LGDIVLAYEIIEIEANVLGKEFENHLVH 128 N ++R KPT+VLSF + + L LGDIV++ E +A G + L+ Sbjct: 64 NGQWRQQPKPTDVLSFAAQEDAPEPLEGLPIELGDIVISIPTAERQAPEHGHSLQQELLF 123 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L HG LHLLG+DH D+ M + ++++ Sbjct: 124 LASHGLLHLLGWDHPDEASLAAMLSRQDALVQ 155 >gi|148653768|ref|YP_001280861.1| hypothetical protein PsycPRwf_1971 [Psychrobacter sp. PRwf-1] gi|148572852|gb|ABQ94911.1| protein of unknown function UPF0054 [Psychrobacter sp. PRwf-1] Length = 185 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Query: 3 VKKVNLPRLDLQIAVE--NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVE---- 56 + +P +D+ A E + ++ + L + V + + ++ V E Sbjct: 1 MTSAAIPLIDIS-ASELVDTQIIEQFYTPQLLQKVLTTTLDFMQAQSDVVLPYFSEVEPS 59 Query: 57 --------LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVL 106 L + TD+ LN E R D TN+LS+P+ + + L LG++++ Sbjct: 60 VWQHKPKQLGVYITDAVEGRALNLEARDKDYATNILSYPSELPAFIIEQMPELALGELIV 119 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 +++++ +A K H+ HL++HG LHLLG+DH MEG E +ILE LGI Sbjct: 120 CHDVVKQQAAEQHKTVAEHVTHLLVHGILHLLGFDHELGQAQQDEMEGFEIAILEQLGIG 179 Query: 166 DPY 168 +PY Sbjct: 180 NPY 182 >gi|307330993|ref|ZP_07610124.1| protein of unknown function UPF0054 [Streptomyces violaceusniger Tu 4113] gi|306883379|gb|EFN14434.1| protein of unknown function UPF0054 [Streptomyces violaceusniger Tu 4113] Length = 165 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 21/168 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ + DE + + A+ + +S ELS++ D+ +E L Sbjct: 1 MAIDVNNESGIDIDERAVLDVARYALARMRIHPLS----------ELSVIVVDADAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-----ASSDGCSSLMLGDIVLAYEIIEIEANVLG--KEFE 123 + ++ + PT+V+SFP + +LGDIVL E+ + + + Sbjct: 51 HIQWMDLPGPTDVMSFPMDELRPPAKDDEEPPQGLLGDIVLCPEVAKKQGEEAPTEHSMD 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL----GINDP 167 L L +HG LHLLGYDH + + M GL+ +I++ G+ P Sbjct: 111 EELHLLTVHGVLHLLGYDHEEADERAEMFGLQAAIVDGWRAEQGLTGP 158 >gi|57899484|dbj|BAD86945.1| haloacid dehalogenase-like hydrolase-like [Oryza sativa Japonica Group] Length = 593 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 5/145 (3%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N +I L L + + +++ G + K VE+S++ + + I+ LN E+RG D Sbjct: 138 NVPMAMKIALDGLLDSNYKTRDTSISDVGRYDK---VEVSVLLCNDNFIQNLNKEWRGED 194 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 +LS D LMLGDIV++ E +A G + + L + G L LL Sbjct: 195 SCIEMLSMSQYIPDLD-VPILMLGDIVISVETAARQAEERGHTLLDEVRILAVRGILRLL 253 Query: 139 GYDHVDDKD-ACVMEGLERSILEDL 162 G+DH + A ME E+ IL+ L Sbjct: 254 GFDHQTSHESAVEMEKEEQLILKSL 278 >gi|227488408|ref|ZP_03918724.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51867] gi|227091622|gb|EEI26934.1| metalloprotease [Corynebacterium glucuronolyticum ATCC 51867] Length = 174 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 18/160 (11%) Query: 11 LDLQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ E+ DE L T+ E + VE+++ D IE Sbjct: 1 MSIEVLNESGNTDVDEKQLSTVAEFALTTMDVH----------PSVEVTITCVDLDTIED 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ + ++ PT+V+SFP + LGDI+L + + +A+ G Sbjct: 51 LHVRWLDLEGPTDVMSFPMDDISSTSGRPDAADPGPAYLGDIILCPDFAQKQADKAGHSL 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLGYDH + M L+ IL+ Sbjct: 111 NHELDLLTVHGCLHLLGYDHAKPNEEQHMFALQNDILKRW 150 >gi|116495001|ref|YP_806735.1| metal-dependent hydrolase [Lactobacillus casei ATCC 334] gi|227534992|ref|ZP_03965041.1| metal-dependent hydrolase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631405|ref|ZP_04674436.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066563|ref|YP_003788586.1| putative metal-dependent hydrolase [Lactobacillus casei str. Zhang] gi|122263582|sp|Q038S9|RRMF_LACC3 RecName: Full=Probable rRNA maturation factor gi|116105151|gb|ABJ70293.1| Predicted metal-dependent hydrolase [Lactobacillus casei ATCC 334] gi|227187383|gb|EEI67450.1| metal-dependent hydrolase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525870|gb|EEQ64871.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438970|gb|ADK18736.1| Predicted metal-dependent hydrolase [Lactobacillus casei str. Zhang] Length = 152 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 5/134 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD- 94 K + K + EN E+S+ IE +N EYR D+ T+V+SF D Sbjct: 19 LIKKLVAFCGKQLKLPEN-TEMSITLVGDDEIERINREYRETDRVTDVISFAIEEGEDDL 77 Query: 95 ---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + +GD+ + + A G FE L + ++HGFLHL GYDH+ +D VM Sbjct: 78 PLLPGMAKNIGDLFIDPLTVRRHAEDYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVM 137 Query: 152 EGLERSILEDLGIN 165 L++ IL G+ Sbjct: 138 IPLQKKILAAYGLT 151 >gi|299144158|ref|ZP_07037238.1| putative metalloprotease [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518643|gb|EFI42382.1| putative metalloprotease [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 148 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 4/130 (3%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + K++ +I + + +S+ F D I+ LN +RG+D T+VLSFP Sbjct: 21 LIKKSILEVIKSEKLDENIM--VSVSFVDDEEIQELNKNFRGVDSSTDVLSFPI--DDEF 76 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 +LGD+V+ + + +A E + +L +H LHLLGYDH++++D +M Sbjct: 77 QIEERILGDVVINTKRVIEQAQEFRHSNEREMSYLTVHSVLHLLGYDHIEEEDRLIMRSK 136 Query: 155 ERSILEDLGI 164 E+ I+++L I Sbjct: 137 EKIIMDNLKI 146 >gi|297243341|ref|ZP_06927274.1| metal-dependent hydrolase [Gardnerella vaginalis AMD] gi|296888588|gb|EFH27327.1| metal-dependent hydrolase [Gardnerella vaginalis AMD] Length = 186 Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D I L+ + ++ PT+V+SFP S + S MLGD+V+ + + Sbjct: 36 DLSITFVDPEPIACLHERWMNLEGPTDVMSFPMDELTPGSDEKVSEGMLGDLVICPWVAQ 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH ++ M GL+R ++ Sbjct: 96 QQALAAGHSTMEEMLLLTIHGILHLLGYDHTTPEEEKQMFGLQRQLM 142 >gi|296081586|emb|CBI20591.3| unnamed protein product [Vitis vinifera] Length = 570 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + + RLD+ IA+ ++ + + + + + G F VELS++ Sbjct: 108 LNIAEMLRLDVPIAM-------KLAFEGIKDSEYKTRDTTISDLGGF---ENVELSVLLC 157 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 + I LN E+R D T+VLS LMLGDIV++ E +A G Sbjct: 158 NDEFIRKLNKEWRDEDHATDVLSMSQHIPEL-KLPILMLGDIVISVETAARQAEERGHTL 216 Query: 123 ENHLVHLIIHGFLHLLGYDHV 143 + + L++HG LHLLG+DH Sbjct: 217 LDEIRILMVHGLLHLLGFDHE 237 >gi|332969799|gb|EGK08810.1| metal-dependent hydrolase [Psychrobacter sp. 1501(2011)] Length = 184 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--GCSSLMLGDIVLAYE 109 + +L + TDS LN E R D TN+LS+P+ + + LG++V+ +E Sbjct: 62 QKPKQLGVYLTDSVEGRELNLEARDKDYATNILSYPSDLPAFILTEMLEIALGELVICHE 121 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPY 168 ++E +A K +H HL++HG LHLLG+DH ++ MEG E +ILE LGI +PY Sbjct: 122 VVEQQAREQHKTVADHATHLLVHGILHLLGFDHELGQEEQDEMEGFEIAILEKLGIANPY 181 >gi|240172994|ref|ZP_04751652.1| putative metalloprotease [Mycobacterium kansasii ATCC 12478] Length = 178 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V K N ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSETELVSVARFVIDKMDVN----------PGAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAEQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLLGYDHGEPDEEREMFALQERLLEEW 148 >gi|90961874|ref|YP_535790.1| hypothetical protein LSL_0897 [Lactobacillus salivarius UCC118] gi|122449026|sp|Q1WTU0|RRMF_LACS1 RecName: Full=Probable rRNA maturation factor gi|90821068|gb|ABD99707.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118] Length = 159 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E ++ K V K + E+ E+S+ ++ +I + Sbjct: 1 MDLEIFDDTNSVPAE-------KIQLVKDVLEFSGKYLELPED-TEMSVTLMNNEQIHEI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLG 119 N +YRG+DK T+V+SF D +GD++++ + ++ +A LG Sbjct: 53 NLKYRGVDKATDVISFAIEEDDPDELPIILPDDVDFEEPKNIGDMMISMDKVKEQAEYLG 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L +HGFLHL GYDH+ +D VM L+R IL+ G+ Sbjct: 113 HSEDRELGFLTVHGFLHLNGYDHMKAEDEKVMFKLQRDILDAYGLK 158 >gi|302206650|gb|ADL10992.1| Putative metalloprotease [Corynebacterium pseudotuberculosis C231] gi|308276893|gb|ADO26792.1| Putative metalloprotease [Corynebacterium pseudotuberculosis I19] Length = 196 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 16/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ L +V G E+++ D + L Sbjct: 1 MSIEVVNESGC--DGVNEEALIDVA-------TFVLGEMDVHPDAEVTISVVDVPTMSDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + ++ PT+V+SFP + +LGDI+L + +A G + Sbjct: 52 HVRWMDLEGPTDVMSFPMDELTPGMGRPDAGAPGPALLGDIILCPDFAMKQAEKAGHDLG 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L HG LHLLGYDH++ D M L+ +L D Sbjct: 112 HELALLTTHGCLHLLGYDHIEPADEQTMFSLQNELLSDW 150 >gi|300858949|ref|YP_003783932.1| hypothetical protein cpfrc_01532 [Corynebacterium pseudotuberculosis FRC41] gi|300686403|gb|ADK29325.1| hypothetical protein cpfrc_01532 [Corynebacterium pseudotuberculosis FRC41] gi|302331199|gb|ADL21393.1| Putative metalloprotease [Corynebacterium pseudotuberculosis 1002] Length = 196 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 16/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ D ++ L +V G E+++ D + L Sbjct: 1 MSIEVVNESGC--DGVNEEALIDVA-------TFVLGEMDVHPDAEVTISVVDVPTMSDL 51 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + ++ PT+V+SFP + +LGDI+L + +A G + Sbjct: 52 HVRWMDLEGPTDVMSFPMDELTPGMGRPDAGAPGPALLGDIILCPDFAMKQAEKAGHDLG 111 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L HG LHLLGYDH++ D M L+ +L D Sbjct: 112 HELALLTTHGCLHLLGYDHIEPADEQTMFSLQNELLSDW 150 >gi|194476814|ref|YP_002048993.1| hypothetical protein PCC_0342 [Paulinella chromatophora] gi|171191821|gb|ACB42783.1| hypothetical protein PCC_0342 [Paulinella chromatophora] Length = 186 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 15/174 (8%) Query: 7 NLPRLDLQIAVE-----NALWGDEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLV 60 + P LDL +E +W D L +F +S+L S+ + I L L Sbjct: 4 SFPDLDLAFRIECKELSTGIWTDPNKGYKLWHELFRVWLSDLSSELPTIFQAEIYTLGLR 63 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFP---------TAFASSDGCSSLMLGDIVLAYEII 111 + +I+ +N ++R DKPT+VLSF + ++ + LGDI+++ E Sbjct: 64 LINDTQIQKINRDWRQNDKPTDVLSFAANSAEVFHSMSESNIQLNKLVELGDIIISLESA 123 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A L E L L HG LHLLG+DH ++ M + ++ L Sbjct: 124 ARQARELNHSLEEELHWLASHGLLHLLGWDHPNEILLNTMLRRQEKLILKLEYK 177 >gi|258542172|ref|YP_003187605.1| hypothetical protein APA01_10760 [Acetobacter pasteurianus IFO 3283-01] gi|256633250|dbj|BAH99225.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256636309|dbj|BAI02278.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256639362|dbj|BAI05324.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256642418|dbj|BAI08373.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256645473|dbj|BAI11421.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256648526|dbj|BAI14467.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256651579|dbj|BAI17513.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654570|dbj|BAI20497.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 168 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 16/156 (10%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +I + + W +H E + +A++ G ++V + LN Sbjct: 26 EILIRDRRWRSYVHNP---EQLVWRALAACSEYGGLPD------TVVLATDREVRELNGR 76 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +RG +PTNVL+F + + GDI+LA E + EA GK +HL HL+IHG Sbjct: 77 HRGKHRPTNVLTF-------EPPPGITGGDIILALETVVREARKAGKPVADHLAHLVIHG 129 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 LHL GYDH +A ME LE +L L + +P++ Sbjct: 130 SLHLAGYDHHHPGEAREMEMLESRLLSRLRVPNPWK 165 >gi|291550420|emb|CBL26682.1| conserved hypothetical protein TIGR00043 [Ruminococcus torques L2-14] Length = 165 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 16/158 (10%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 +E +++ + A+ + E++L+ T++ +I +N E RGID+PT+ Sbjct: 6 EEEGNIKLDFDTEEIAALVIDAALELADCPYEAEINLLLTENAQIHEMNLEQRGIDRPTD 65 Query: 83 VLSFPTAFASSDGC----------------SSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 VLSFP G LMLGDIV++ E + +A G + Sbjct: 66 VLSFPMIEYEEPGDFSVIDEESAEAFNPESGELMLGDIVISKEKVLSQAEEYGHLPKREY 125 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LI H LHL GYDH+ D++ VME ++ I+E +GI Sbjct: 126 AFLIAHSMLHLFGYDHMVDEERVVMEAKQKEIMEKVGI 163 >gi|186681803|ref|YP_001864999.1| metalloprotease [Nostoc punctiforme PCC 73102] gi|186464255|gb|ACC80056.1| protein of unknown function UPF0054 [Nostoc punctiforme PCC 73102] Length = 179 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 16/171 (9%) Query: 11 LDLQIAVENALWGD--------EIHLRTLCEVVFAKAVSNLIS--KGYFVKENIVELSLV 60 L +++ VE++ + E + + ++ + + E+ L Sbjct: 3 LSVELYVEDSFYDLSPTTSVKIEDTDTRIPSETWENWFNHWLEILQPQIPPAPSYEIGLC 62 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------SLMLGDIVLAYEIIEIE 114 TD +I+ LN +YR +KPT+VL+F L LGDI+++ + + + Sbjct: 63 LTDDSQIQELNAQYRQQNKPTDVLAFAALEVDFPQSKEMLASVPLYLGDIIVSVDTAQRQ 122 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 A L L HG LHLLG+DH D++ M + +L +GI Sbjct: 123 AKQQEHSLPTELAWLASHGLLHLLGWDHPDEESLGRMLKQQVRLLNAIGIA 173 >gi|283783326|ref|YP_003374080.1| metalloprotein, YbeY family [Gardnerella vaginalis 409-05] gi|283441013|gb|ADB13479.1| metalloprotein, YbeY family [Gardnerella vaginalis 409-05] Length = 186 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D I L+ + ++ PT+V+SFP S + S MLGD+V+ + + Sbjct: 36 DLSITFVDPEPIACLHERWMNLEGPTDVMSFPMDELTPGSDEKVSEGMLGDLVICPWVAQ 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH ++ M GL+R ++ Sbjct: 96 QQALAAGHSTMEEMLLLTIHGILHLLGYDHTTPEEEKQMFGLQRQLM 142 >gi|262037729|ref|ZP_06011171.1| putative metalloprotease [Leptotrichia goodfellowii F0264] gi|261748201|gb|EEY35598.1| putative metalloprotease [Leptotrichia goodfellowii F0264] Length = 154 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 E + DE + + + S EN LSL+ D+ I +N EYR Sbjct: 11 NEIEEFLDEKKIENFIKFILENEFKEEYS------ENDYYLSLLIADNKIIRKINKEYRN 64 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 D T+V+SF + G +LGDI+++ E ++ +A G E +++ HG LH Sbjct: 65 KDLETDVISFAYNETENIG-GMNVLGDIIISLERVKSQAEDYGHSEEREFYYVLCHGMLH 123 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGIN 165 LLGYDH++++D VM E IL+ Sbjct: 124 LLGYDHIEEEDKKVMREKEEKILKQFNYT 152 >gi|291302084|ref|YP_003513362.1| hypothetical protein Snas_4626 [Stackebrandtia nassauensis DSM 44728] gi|290571304|gb|ADD44269.1| protein of unknown function UPF0054 [Stackebrandtia nassauensis DSM 44728] Length = 156 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ G E+ ++C+V + + +LS++ D + L Sbjct: 1 MPIEVANES---GAEVGTESICDVARH-------ALSEMGVHPLADLSILVVDETYMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF--------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 N + G PT+VL+FP S+ + +LGD+VL E+ E +A G Sbjct: 51 NHRWMGAAGPTDVLAFPMDELSVGRGPSNDSEPAAETLLGDVVLCPEVAERQAAKAGHST 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LH+LGYDH + +A M GL++S+L+ Sbjct: 111 ADELHMLTVHGVLHILGYDHAEPDEAKQMFGLQQSLLDSW 150 >gi|227503130|ref|ZP_03933179.1| metalloprotease [Corynebacterium accolens ATCC 49725] gi|227076191|gb|EEI14154.1| metalloprotease [Corynebacterium accolens ATCC 49725] Length = 206 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 11/119 (9%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-----------ASSDGCSSLMLGD 103 E ++ D IE L+ + ++ PT+V+SFP + MLGD Sbjct: 36 AECTITCVDLKSIEDLHIRWMDLEGPTDVMSFPMDELTPGATSGGGRPDAADPGPAMLGD 95 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 IVL E +A+ G + L L +HG LHLLGYDH + M + +L D Sbjct: 96 IVLCPEFALRQADAAGHSLGHELALLTVHGCLHLLGYDHATAAEEKEMFARQNELLADW 154 >gi|329118104|ref|ZP_08246816.1| metal-dependent hydrolase [Neisseria bacilliformis ATCC BAA-1200] gi|327465764|gb|EGF12037.1| metal-dependent hydrolase [Neisseria bacilliformis ATCC BAA-1200] Length = 165 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 78/161 (48%), Gaps = 12/161 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 RLDL +++ + E F + + + Y E+SL+ D Sbjct: 16 RLDLHFDNQSSA-------QAPAENQFRLWIWQAVKRHY----RRAEISLILLDEPAARA 64 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YRG D TNVLSF + S + GD+V+ +I+ EA GK E H H Sbjct: 65 CNRDYRGKDYATNVLSFALDEGETCAPLSDGLHGDLVICPQIVLKEAAEQGKTPEQHYAH 124 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 L IHG LHL+GYDH++D +A ME LE +L L DPY+ Sbjct: 125 LTIHGTLHLMGYDHIEDTEAEEMETLETELLNQLAYPDPYK 165 >gi|227495952|ref|ZP_03926263.1| metalloprotease [Actinomyces urogenitalis DSM 15434] gi|226834506|gb|EEH66889.1| metalloprotease [Actinomyces urogenitalis DSM 15434] Length = 152 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E + D L + V N EL+++F D + L Sbjct: 1 MTTEVNNETDVEIDGAEFAALADHVLRAMHVN----------PQAELNILFIDPEPMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + + + PT+V+SFP + LGDIVL ++ +A G + Sbjct: 51 HVRWLDLPGPTDVMSFPMDELRPGTEDSETPAGTLGDIVLCPQVAAKQALEAGHSAPEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH ++++ M L+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEEEEKKEMFALQRQLL 143 >gi|222152665|ref|YP_002561840.1| putative metalloprotease [Streptococcus uberis 0140J] gi|254803968|sp|B9DRF7|RRMF_STRU0 RecName: Full=Probable rRNA maturation factor gi|222113476|emb|CAR41204.1| conserved hypothetical protein [Streptococcus uberis 0140J] Length = 166 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E L EI +TL + FA ++ E+S+ F + R L Sbjct: 1 MYIEMIDETGLVSQEIMEQTLDLLNFA---------ARKTGKDEKEMSVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSF------PTAFASSDGCSSLML-----------GDIVLAYEIIEI 113 N EYR D+PT+V+S P F D + L G++ ++ + + Sbjct: 52 NLEYRDTDRPTDVISLEYKPESPILFDERDLEENPDLAEMLSEFDAYIGELFISIDKAKE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAQEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLT 163 >gi|125624293|ref|YP_001032776.1| putative metalloprotease [Lactococcus lactis subsp. cremoris MG1363] gi|166231388|sp|A2RL98|RRMF_LACLM RecName: Full=Probable rRNA maturation factor gi|124493101|emb|CAL98065.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071075|gb|ADJ60475.1| putative metalloprotease [Lactococcus lactis subsp. cremoris NZ9000] Length = 162 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 22/169 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +T + FA +L + E+S+ F D+ R L Sbjct: 1 MYVELVDETGQVPSEIIEQTKEVLAFAAKKLDL--------KESTEMSVTFVDNARSHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS--------------LMLGDIVLAYEIIEIEAN 116 N +YR D+PT+V+S S+ +G++ ++ + +A Sbjct: 53 NLQYRETDRPTDVISLEYKPDESEFFFDEDMELPEELLEEMDPFIGELFISIDKAAEQAA 112 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 113 DYGHSIEREYGWLAVHGFLHINGYDHYTPEEESEMFALQEEILTAYGLT 161 >gi|167767292|ref|ZP_02439345.1| hypothetical protein CLOSS21_01811 [Clostridium sp. SS2/1] gi|167711267|gb|EDS21846.1| hypothetical protein CLOSS21_01811 [Clostridium sp. SS2/1] gi|291559398|emb|CBL38198.1| conserved hypothetical protein TIGR00043 [butyrate-producing bacterium SSC/2] Length = 170 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 22/169 (13%) Query: 13 LQIAVENALWGD-EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + I +EN G+ I + V A+ Y E++L+ T++ I +N Sbjct: 1 MSIIIENEYEGEINIPYEKIAHEVIEAAID------YVDCPYECEVNLMLTNNETIHAIN 54 Query: 72 FEYRGIDKPTNVLSFPTAFASSD---------------GCSSLMLGDIVLAYEIIEIEAN 116 E R ID+PT+VLSFP A +LGDIV++ + + +A Sbjct: 55 KEQREIDRPTDVLSFPMAEYEEPADFSKIEEDPMAFDPESGEFLLGDIVISMDKVWEQAE 114 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E LI H LHL GYDH+++++ ME + IL Sbjct: 115 NYGHSREREYAFLIAHSMLHLFGYDHMEEEERKDMEKRQEEILTKTKYT 163 >gi|306836631|ref|ZP_07469597.1| metalloprotease [Corynebacterium accolens ATCC 49726] gi|304567461|gb|EFM43060.1| metalloprotease [Corynebacterium accolens ATCC 49726] Length = 206 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 11/120 (9%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-----------ASSDGCSSLMLG 102 E ++ D IE L+ + ++ PT+V+SFP + MLG Sbjct: 35 DAECTITCVDLKSIEDLHIRWMDLEGPTDVMSFPMDELTPGATSGGGRPDAADPGPSMLG 94 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DIVL E +A+ G + L L +HG LHLLGYDH + M + +L D Sbjct: 95 DIVLCPEFALRQADAAGHSLGHELALLTVHGCLHLLGYDHATAAEEKEMFARQNELLADW 154 >gi|225351948|ref|ZP_03742971.1| hypothetical protein BIFPSEUDO_03553 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157195|gb|EEG70534.1| hypothetical protein BIFPSEUDO_03553 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 181 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAQLHMRWMNLEGPTDVMSFPMDELRPGDGRTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 96 QQALAAGHNTMEEMMLLTIHGILHLLGYDHATPEQERQMFGLQRQLL 142 >gi|118580450|ref|YP_901700.1| hypothetical protein Ppro_2034 [Pelobacter propionicus DSM 2379] gi|118503160|gb|ABK99642.1| protein of unknown function UPF0054 [Pelobacter propionicus DSM 2379] Length = 127 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 2/113 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 ELS+ I +N +Y D+PTNV+SF SL LGD+V++ + Sbjct: 4 PEGTELSISIVGDRAIRRINRDYLNRDRPTNVISFSLQEGECGAIPSLALGDVVISADTA 63 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHV--DDKDACVMEGLERSILEDL 162 EA G EF L L++HG LHL GYDH +++A ME E + L Sbjct: 64 LREAEEGGMEFFERLCFLLLHGTLHLCGYDHERSGEEEAARMEAREVELFSVL 116 >gi|21909871|ref|NP_664139.1| putative metalloprotease [Streptococcus pyogenes MGAS315] gi|21904058|gb|AAM78942.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] Length = 175 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 26/182 (14%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M + + + +++ E EI +TL + FA + E+S+ Sbjct: 1 MGSPSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFA---------AQKTGKEEKEMSVT 51 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLS----------FPTAFASSDGCSSLM-------LGD 103 F + R LN EYR D+PT+V+S F ++D + M +G+ Sbjct: 52 FVTNERSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGE 111 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + ++ + ++ G FE + L +HGFLH+ GYDH ++ M L+ IL G Sbjct: 112 LFISIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYG 171 Query: 164 IN 165 + Sbjct: 172 LT 173 >gi|237785903|ref|YP_002906608.1| putative metalloprotease [Corynebacterium kroppenstedtii DSM 44385] gi|259646826|sp|C4LJR0|RRMF_CORK4 RecName: Full=Probable rRNA maturation factor gi|237758815|gb|ACR18065.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 202 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 18/160 (11%) Query: 11 LDLQIAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ E+ G +E L + + + + ++++ D IE Sbjct: 1 MSIEVFNESGYDGVNEEALIDVAQFALMRMDIH----------PAADMTISIVDEPTIED 50 Query: 70 LNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ + ++ PT+V+SFP +D MLGDIVL E +A+ G Sbjct: 51 LHVRWLNLEGPTDVMSFPMDELTPGSGRPDADAPGPAMLGDIVLCPAFAERQAHRAGHGL 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLGYDHV ++ M L+ IL D Sbjct: 111 GHELSLLTVHGILHLLGYDHVAPEEERRMFALQNDILADW 150 >gi|145352030|ref|XP_001420362.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580596|gb|ABO98655.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 411 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 5/110 (4%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELS+ I +LN YR D T+VLSFP +LGD++++ + + Sbjct: 4 CELSVALCSDEYIRSLNAGYREKDSATDVLSFPAES----FGPMAVLGDVIVSVDTASAQ 59 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLG 163 A +G + L++HG LHLLG DH + +A VM E+ +L+ LG Sbjct: 60 AREVGHSLRDECRVLLVHGTLHLLGMDHEVSESEAEVMAAAEQEVLKALG 109 >gi|296116297|ref|ZP_06834913.1| hypothetical protein GXY_10882 [Gluconacetobacter hansenii ATCC 23769] gi|295977116|gb|EFG83878.1| hypothetical protein GXY_10882 [Gluconacetobacter hansenii ATCC 23769] Length = 192 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 12 DLQIAVENALWGDEIHLRTL-CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 D+ +++ W + + A+ L G +++V D + L Sbjct: 26 DIDVSITERRWHRAMPNPAREVQRAVRAAMRELDVSGA--------VTVVLADDLTVRRL 77 Query: 71 NFEYRGIDKPTNVLSF---PTAFASSDGCSSLML--GDIVLAYEIIEIEANVLGKEFENH 125 N +RG +KPTNVL+F P +A +D S + L GDI+LA+ +E EA G+ NH Sbjct: 78 NHLHRGRNKPTNVLTFEYAPADYAPTDSGSGIWLWGGDIILAFATVEREARAAGRSVRNH 137 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 ++HL++HG LHL GYDH DA ME E IL +GI +P++ Sbjct: 138 MMHLLVHGVLHLSGYDHHHAGDARAMEMEESRILGRMGIPNPWK 181 >gi|296119867|ref|ZP_06838421.1| putative metalloprotease [Corynebacterium ammoniagenes DSM 20306] gi|295967021|gb|EFG80292.1| putative metalloprotease [Corynebacterium ammoniagenes DSM 20306] Length = 191 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF---------ASSDGCSSLMLG 102 VEL++ D IE L+ + ++ PT+V+SFP + MLG Sbjct: 33 NPDVELTMTCVDLETIEELHVRWMDLEGPTDVMSFPIDEITPGAMTPRPDAPDMGPAMLG 92 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DIVL E +A+ G + L L HG LHLLGYDH + M L+ +L D Sbjct: 93 DIVLCPAFAERQADAAGHSLSHELALLTTHGCLHLLGYDHGTPSEEQEMFALQNELLADW 152 >gi|254432649|ref|ZP_05046352.1| hypothetical protein CPCC7001_2542 [Cyanobium sp. PCC 7001] gi|197627102|gb|EDY39661.1| hypothetical protein CPCC7001_2542 [Cyanobium sp. PCC 7001] Length = 194 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 19/177 (10%) Query: 2 SVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYF-VKENIVELSLV 60 + +P + L +A E A + ++ L + ++ LSL Sbjct: 9 TADSAEVPAVALDLAFEAAPGLATGLSANAWQQELQGWLTQLRPELPPRLQARAYSLSLS 68 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------------------MLG 102 D I LN E+R PT+VL+F DG L LG Sbjct: 69 LVDDAGIAALNQEWREKPGPTDVLAFAAQDDDLDGLPPLAPGPASAGLEDELEEEPLELG 128 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 DIV++ + +A G E L L HG LHLLG+DH D+ M + ++L Sbjct: 129 DIVISVDTALRQAPEHGHSLEEELRFLASHGLLHLLGWDHPDEASLATMLARQDALL 185 >gi|251781164|ref|ZP_04824084.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085479|gb|EES51369.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 166 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 19/146 (13%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF----- 90 K + + + + E+SL+F D+ I +N E R ID+ T+VLSFP Sbjct: 21 LEKVIEFALKEEDVNIPS--EISLLFVDNEEIREINNETRNIDRATDVLSFPMLDYPDKK 78 Query: 91 ------------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 + L+LGDIVL+ E ++ +E +L++H LHLL Sbjct: 79 VFKEVYTENDFSEADFDGDDLVLGDIVLSLERALEQSKEYNHSYEREASYLVVHSVLHLL 138 Query: 139 GYDHVDDKDACVMEGLERSILEDLGI 164 GYDH++++D M E IL L I Sbjct: 139 GYDHMEEEDKVKMRKREEEILTALDI 164 >gi|227890900|ref|ZP_04008705.1| metal-dependent hydrolase [Lactobacillus salivarius ATCC 11741] gi|227867309|gb|EEJ74730.1| metal-dependent hydrolase [Lactobacillus salivarius ATCC 11741] Length = 159 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 19/166 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DL+I + E ++ K V K + E+ E+S+ ++ +I + Sbjct: 1 MDLEIFDDTNSVPAE-------KIQLVKDVLEFSGKYLELPED-TEMSVTLMNNEQIHEI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCS-----------SLMLGDIVLAYEIIEIEANVLG 119 N +YRG+DK T+V+SF D +GD++++ + ++ +A L Sbjct: 53 NLKYRGVDKATDVISFAIEEDDPDELPIILPDDVDFEEPKNIGDMMISMDKVKEQAEYLD 112 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L +HGFLHL GYDH+ +D VM L+R IL+ G+ Sbjct: 113 HSEDRELGFLTVHGFLHLNGYDHMKAEDEKVMFKLQRDILDAYGLK 158 >gi|288905824|ref|YP_003431046.1| hypothetical protein GALLO_1631 [Streptococcus gallolyticus UCN34] gi|306831913|ref|ZP_07465068.1| probable metalloprotease [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834027|ref|ZP_07467148.1| probable metalloprotease [Streptococcus bovis ATCC 700338] gi|325978859|ref|YP_004288575.1| putative metalloprotease [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732550|emb|CBI14122.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304423815|gb|EFM26960.1| probable metalloprotease [Streptococcus bovis ATCC 700338] gi|304425839|gb|EFM28956.1| probable metalloprotease [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178787|emb|CBZ48831.1| putative metalloprotease [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 165 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV------ 83 + E + + + L ++ E+++ F + R LN EYR D+PT+V Sbjct: 11 QVSEAIKKQTLDLLQFAAEKTGKDNKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 84 ----LSFPTAFASSDGCSSLML-------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 LSF + + ML G++ ++ + +A G FE + L +H Sbjct: 71 PESSLSFSEEDLEENPELAEMLDEFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M L+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEKEMFTLQEEILTAYGLK 163 >gi|332522950|ref|ZP_08399202.1| translation metalloprotein YbeY [Streptococcus porcinus str. Jelinkova 176] gi|332314214|gb|EGJ27199.1| translation metalloprotein YbeY [Streptococcus porcinus str. Jelinkova 176] Length = 165 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 19/159 (11%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE L + + K + N +K E E+S+ F + R LN EYR D+PT+V Sbjct: 7 DETGLVSQEIMEQTKDLLNFAAKKTGKAEK--EMSVTFVTNERSHELNLEYRDTDRPTDV 64 Query: 84 LSF------PTAFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHL 126 +S P F SD + L G++ ++ + +A G FE + Sbjct: 65 ISLEYKPERPILFDESDLEDNPDLAEMLAEFDAYIGELFISIDKAREQAQEYGHSFEREM 124 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 125 GFLAVHGFLHITGYDHYTPEEEKEMFTLQEEILTAYGLT 163 >gi|320527302|ref|ZP_08028487.1| conserved hypothetical protein TIGR00043 [Solobacterium moorei F0204] gi|320132326|gb|EFW24871.1| conserved hypothetical protein TIGR00043 [Solobacterium moorei F0204] Length = 152 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGCSSLMLGD 103 + +E+S+ F S I +N +YRGID+PT+V+SF + LGD Sbjct: 28 EKELKLAKDLEISITFVRSRTIHIINRDYRGIDRPTDVISFAIRDGLEAFIPDEEKDLGD 87 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + + + +A G + + L HG LH LGYDH++ D M L+ IL+ Sbjct: 88 LFINIDYARKQAREYGHSEKREMGFLFTHGLLHCLGYDHMNPDDEKKMFALQDRILD 144 >gi|116333396|ref|YP_794923.1| metal-dependent hydrolase [Lactobacillus brevis ATCC 367] gi|122269917|sp|Q03SD0|RRMF_LACBA RecName: Full=Probable rRNA maturation factor gi|116098743|gb|ABJ63892.1| Predicted metal-dependent hydrolase [Lactobacillus brevis ATCC 367] Length = 162 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 13/134 (9%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------- 97 + Y + E+S+ ++ I +N +YRG+D+ T+V+SF + Sbjct: 28 AGKYLKLADNTEMSVTLMNNEDIHRINQQYRGVDRATDVISFAIEDDDEEAADFPLVMDD 87 Query: 98 ------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 +GDI ++ + + +A+ LG +E L L++HGFLHL GYDH++ +D VM Sbjct: 88 ELAAEIPENIGDIFVSMDKVAEQADYLGHSYERELGFLVVHGFLHLNGYDHMEPEDEKVM 147 Query: 152 EGLERSILEDLGIN 165 L+ IL+ G+ Sbjct: 148 FKLQADILDAYGLK 161 >gi|81428486|ref|YP_395486.1| hypothetical protein LSA0876 [Lactobacillus sakei subsp. sakei 23K] gi|123564327|sp|Q38XA4|RRMF_LACSS RecName: Full=Probable rRNA maturation factor gi|78610128|emb|CAI55177.1| Hypothetical protein LCA_0876 [Lactobacillus sakei subsp. sakei 23K] Length = 158 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 18/165 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D+QI DE + ++ + V + + E+ E+S+ F + RI + Sbjct: 1 MDIQII-------DETKIVPEAQIKLVEDVLEFAGQKLELAED-TEMSVTFVTNERIRQI 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----------LGDIVLAYEIIEIEANVLGK 120 N EYR D+ T+V+SF + +GD+ ++ E +A G Sbjct: 53 NQEYRNTDRATDVISFAIEEDPEEEGLPANFEELFDIPKNIGDLFVSLEKAAEQAETYGH 112 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 FE L + ++HGFLHL GYDH+ +D M L+ +IL++ G+ Sbjct: 113 SFERELGYTMVHGFLHLNGYDHIHTEDEVKMIPLQETILDEFGLK 157 >gi|327382542|gb|AEA54018.1| Probable rRNA maturation factor [Lactobacillus casei LC2W] Length = 120 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 4/118 (3%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLA 107 E+S+ IE +N EYR D+ T+V+SF D + +GD+ + Sbjct: 2 PENTEMSITLVGDDEIERINREYRETDRVTDVISFAIEEGEDDLPLLPGMAKNIGDLFID 61 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + A G FE L + ++HGFLHL GYDH+ +D VM L++ IL G+ Sbjct: 62 PLTVRRHAEEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKILAAYGLT 119 >gi|251781920|ref|YP_002996222.1| putative metalloprotease [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390549|dbj|BAH81008.1| hypothetical protein SDEG_0506 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 182 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 26/178 (14%) Query: 5 KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + + + +++ E EI +T+ + FA + E+S+ F + Sbjct: 12 PLTINLMYIEMIDETGQVSQEIMEQTIDLLNFA---------AQKTGKEEKEMSVTFVTN 62 Query: 65 HRIETLNFEYRGIDKPTNVLS----------FPTAFASSDGCSSLM-------LGDIVLA 107 R LN EYR D+PT+V+S F ++D + M +G++ ++ Sbjct: 63 ARSHELNLEYRDTDRPTDVISLEYKPETPILFSQDDLAADPSLAEMMAEFDAYIGELFIS 122 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 123 IDKAREQAEDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLT 180 >gi|94498013|ref|ZP_01304577.1| predicted metal-dependent hydrolase [Sphingomonas sp. SKA58] gi|94422596|gb|EAT07633.1| predicted metal-dependent hydrolase [Sphingomonas sp. SKA58] Length = 169 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 8/165 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ + E W D ++L + A+++ G+ E+++ T + Sbjct: 1 MIDVALLHETG-WPD-ADWQSLADRAVTAAIAHSPYAGFAAAPTHYEIAVKLTSDEEVHG 58 Query: 70 LNFEYRGIDKPTNVLSFPTAFAS------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LN YR DKPTNVLSFP + ++LGDIVLA + EA G Sbjct: 59 LNRAYRDKDKPTNVLSFPMVQDDLLQATANTDDGEVLLGDIVLAEGVCAAEAADKGISIL 118 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H HLI+HG HLLGYDH+DD +A ME LE + L LG+ DPY Sbjct: 119 DHATHLIVHGTFHLLGYDHMDDAEAEAMEALEIAALASLGLADPY 163 >gi|300088389|ref|YP_003758911.1| hypothetical protein Dehly_1299 [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528122|gb|ADJ26590.1| protein of unknown function UPF0054 [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 161 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 22/165 (13%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++D+ + E + LR+L + + S E+ + T ++ Sbjct: 2 KIDITVDREYKKAVSVLWLRSLARQILVAQCAEAGS----------EMGIYITGQEKMRE 51 Query: 70 LNFEYRGIDKPTNVLSFPTA------------FASSDGCSSLMLGDIVLAYEIIEIEANV 117 LN YRG DKPT+VLSF SL LG++V++ E++A Sbjct: 52 LNRVYRGKDKPTDVLSFSFYVKEASGSAETDVEFPVPEDGSLHLGELVISLPQAELQAAE 111 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LG + L L+IHG +HLLG+DH D DA +ME E IL+ L Sbjct: 112 LGHSVKTELARLLIHGVMHLLGFDHEKDADAEIMEARELEILKQL 156 >gi|304438430|ref|ZP_07398370.1| metal-dependent hydrolase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368513|gb|EFM22198.1| metal-dependent hydrolase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 153 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 9/157 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I + + + + +AV ++ G E+S+ TD I LN Sbjct: 1 MEITI--GKEPENLDVPQEALDAVRRAV---LTVGELYGVMDAEVSVTLTDDAHIHVLNR 55 Query: 73 EYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +YR +D+PT+VLSF + D ++LGD+V++ E + +A G L Sbjct: 56 DYRSVDRPTDVLSFALTESEEPAILDAPYGVVLGDLVISLERVAAQAEEYGHSVLRELSF 115 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HG LHLLGYDH++++D ME +R +++ LGI Sbjct: 116 LTVHGMLHLLGYDHIEEEDRVEMEEEQRHVMDVLGIA 152 >gi|188588423|ref|YP_001920266.1| putative metalloprotease [Clostridium botulinum E3 str. Alaska E43] gi|238689660|sp|B2V2J8|RRMF_CLOBA RecName: Full=Probable rRNA maturation factor gi|188498704|gb|ACD51840.1| conserved hypothetical protein [Clostridium botulinum E3 str. Alaska E43] Length = 166 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 19/146 (13%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD- 94 K + + + + E+SL+F D+ I +N E R ID+ T+VLSFP Sbjct: 21 LEKVIEFALKEEDVNIPS--EISLLFVDNEEIREINNETRNIDRATDVLSFPMLDYPEKK 78 Query: 95 ----------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 L+LGDIVL+ E ++ +E +L++H LHLL Sbjct: 79 VFKEVYTENDFSEADFDGDDLVLGDIVLSLERALEQSKEYNHSYEREASYLVVHSVLHLL 138 Query: 139 GYDHVDDKDACVMEGLERSILEDLGI 164 GYDH+++ D M E IL L I Sbjct: 139 GYDHMEEDDKVKMRKREEEILTALDI 164 >gi|228906475|ref|YP_932284.2| unkown domain/metalloprotease fusion protein [Azoarcus sp. BH72] Length = 271 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 22/172 (12%) Query: 5 KVNLPRLDLQIAV-----ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 LP L L++ + A + +R + E+++ Sbjct: 115 AAKLPVLTLEVQKALDGGDKAAAPKKHQIRRWAQAALRT---------------DAEVTV 159 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEIIEIEANV 117 LN YRG D TNVL+F ++GD+VL ++ EA Sbjct: 160 RLVGETEGRALNLGYRGKDYATNVLTFVYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAE 219 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK + H HL++HG LHL G DH DD +A ME E +IL LG +PY Sbjct: 220 QGKALDAHFAHLVVHGMLHLQGLDHEDDAEAEAMETAETNILRGLGYANPYA 271 >gi|255020723|ref|ZP_05292783.1| hypothetical protein ACA_1687 [Acidithiobacillus caldus ATCC 51756] gi|254969839|gb|EET27341.1| hypothetical protein ACA_1687 [Acidithiobacillus caldus ATCC 51756] Length = 169 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 81/164 (49%), Gaps = 3/164 (1%) Query: 8 LPRLDLQIAVENALWGD--EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 P L L V+ +L D + LC A A++ + + LSL F + Sbjct: 2 TPALRLYRRVDESLEPDLPPPPGQRLCRTAIAAALTVPSPRLANGDGVRIGLSLAFVGAA 61 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + LN ++R PTN LSFPT + LGDIVLA I+ EA GK +H Sbjct: 62 AMAELNGQFRQRPYPTNCLSFPTPSGAG-PYRQDFLGDIVLAPAIVLREAVEQGKRPADH 120 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 HL+IH LHLLG+DH + +A ME LE +L +G+ DPY+ Sbjct: 121 YRHLLIHSTLHLLGFDHEEAAEAAEMEALETHLLAQMGVADPYQ 164 >gi|225873317|ref|YP_002754776.1| conserved hypothetical protein TIGR00043 [Acidobacterium capsulatum ATCC 51196] gi|225791778|gb|ACO31868.1| conserved hypothetical protein TIGR00043 [Acidobacterium capsulatum ATCC 51196] Length = 202 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 4/112 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA--FASSDGCSSLMLGDIVLAYEIIEI 113 ++S++ T +I N E+RG +KPT+VLSFP A + + GD+ ++ E + Sbjct: 37 DVSVLLTGDKQIRRWNREFRGKNKPTDVLSFPAAPLDGPDGPIPAPIAGDLAISVETADR 96 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A L L++HG LHL GYDH D M LE+ + LG+ Sbjct: 97 QAAEHRHTLIEELKVLLLHGTLHLAGYDHETDN--GEMARLEQRLRIKLGLK 146 >gi|293400676|ref|ZP_06644821.1| putative metalloprotease [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305702|gb|EFE46946.1| putative metalloprotease [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 162 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 3/108 (2%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSL-MLGDIVLAYEIIEIE 114 S++F D I +N EYR ID+PT+V+SF + L LGDI + + + + Sbjct: 48 SIIFVDPAMIHEINREYRHIDRPTDVISFALKDEEDTYEMMEGLDELGDIFINVQAVVDQ 107 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 A G + L HG LHLLGYDH++ D +M L+ IL+ + Sbjct: 108 AAEYGHSLRREVCFLFTHGLLHLLGYDHMEKDDEKIMFALQDVILDAI 155 >gi|152992855|ref|YP_001358576.1| metalloprotease [Sulfurovum sp. NBC37-1] gi|172048740|sp|A6Q9R0|RRMF_SULNB RecName: Full=Probable rRNA maturation factor gi|151424716|dbj|BAF72219.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 147 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 3/111 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-GCSSLMLGDIVLAYEIIEIE 114 E+ L+ TD+ I+ LN EYR D PT+VLSFP ++ + LG IV++ + + Sbjct: 31 EIELIITDNENIQELNREYRDRDNPTDVLSFPLETPFTEQSVFDIPLGTIVISADFVRER 90 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 A G ++ L L IHG LHLLGYDH D+ M ER I+E+ G+ Sbjct: 91 AKTYGHTEQDELKLLFIHGLLHLLGYDHETDE--GEMRQKEREIIEEFGLP 139 >gi|125538685|gb|EAY85080.1| hypothetical protein OsI_06436 [Oryza sativa Indica Group] Length = 543 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 16/149 (10%) Query: 10 RLDLQIAVENALWGDEI------HLRTLCEVVFAKAVSNLISKGYFVKEN---------I 54 L++QI +E AL D L+ A +L + Y ++N Sbjct: 99 ELNVQIGIEEALPDDPTILSIAEALQMDVAKAAKVAFDHLENSEYKTRDNCISDVNKYDT 158 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S++ D I LN E+R D T+VLS D L LGDIV++ + + + Sbjct: 159 VEVSILLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGLD-IPILQLGDIVISIDTAQRQ 217 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 A G + + L++HG LHLLG+DH Sbjct: 218 AEERGHTLHDEIRILMVHGLLHLLGFDHE 246 >gi|68535676|ref|YP_250381.1| putative metalloprotease [Corynebacterium jeikeium K411] gi|260578250|ref|ZP_05846166.1| metalloprotease [Corynebacterium jeikeium ATCC 43734] gi|123651314|sp|Q4JWP4|RRMF_CORJK RecName: Full=Probable rRNA maturation factor gi|68263275|emb|CAI36763.1| conserved hypothetical protein [Corynebacterium jeikeium K411] gi|258603552|gb|EEW16813.1| metalloprotease [Corynebacterium jeikeium ATCC 43734] Length = 182 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 18/160 (11%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ E+ +E L + ELS+ D IE Sbjct: 1 MSIEVFNESGRGEVNEEELIDVARYALWT----------LDVHPAAELSIHIVDLETIED 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ + + PT+V+SFP + S MLGDI+L + E +A G Sbjct: 51 LHVRWMDLPGPTDVMSFPMDELTPGWGRKDAAEPSPAMLGDIMLCPDFAEGQATRAGHSL 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLG+DHV +D M L+ IL + Sbjct: 111 AHELDLLTVHGVLHLLGFDHVTPEDEQKMFALQNEILANW 150 >gi|168335125|ref|ZP_02693233.1| hypothetical protein Epulo_08803 [Epulopiscium sp. 'N.t. morphotype B'] Length = 153 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 9/158 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I + L+ E L V + + N +E+SL D I T+ Sbjct: 1 MHIDIDDQEGLFVLEPKLEQKIIEVIEECL------KLENISNDIEISLSIVDKETIRTI 54 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS---LMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N ++R ID+ T+VLSFP A S+ S ++LGDI++ +I + +A + Sbjct: 55 NRDFREIDRDTDVLSFPQFEAQSEFVDSADVVILGDIIICLDIAKEQAVAYNHSLAREIC 114 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LI H HLLGYDH+ + D +M + +LE L I Sbjct: 115 FLIAHSCFHLLGYDHMTEDDEIIMFAKQDCVLETLKIT 152 >gi|187933939|ref|YP_001885105.1| metalloprotease [Clostridium botulinum B str. Eklund 17B] gi|238691633|sp|B2TM06|RRMF_CLOBB RecName: Full=Probable rRNA maturation factor gi|187722092|gb|ACD23313.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund 17B] Length = 166 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 17/126 (13%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-----------------GCSS 98 E+SL+F D+ I +N E R ID+ T+VLSFP Sbjct: 39 EISLLFVDNEEIREINNETRNIDRATDVLSFPMLDYPEKKVFKEVYTENDFSEADFDGDD 98 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 L+LGD+VL+ E ++ +E +L++H LHLLGYDH++++D M E I Sbjct: 99 LVLGDVVLSLERALEQSKEYNHSYEREASYLVVHSVLHLLGYDHMEEEDKVKMRKREEEI 158 Query: 159 LEDLGI 164 L L I Sbjct: 159 LTALDI 164 >gi|71903040|ref|YP_279843.1| putative metalloprotease [Streptococcus pyogenes MGAS6180] gi|71802135|gb|AAX71488.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS6180] Length = 182 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 26/179 (14%) Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTD 63 + + + +++ E EI +TL + FA + E+S+ F Sbjct: 11 PSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFA---------AQKTGKEEKEMSVTFVT 61 Query: 64 SHRIETLNFEYRGIDKPTNVLSF------PTAFASSDGCSSLML-----------GDIVL 106 + R LN EYR D+PT+V+S P F+ D + L G++ + Sbjct: 62 NERSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDFAADPSLAEMMAEFDAYIGELFI 121 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + + ++ G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 122 SIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGLT 180 >gi|298252735|ref|ZP_06976529.1| metal-dependent hydrolase [Gardnerella vaginalis 5-1] gi|297533099|gb|EFH71983.1| metal-dependent hydrolase [Gardnerella vaginalis 5-1] Length = 188 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D I L+ + ++ PT+V+SFP S + S MLGD+V+ + + Sbjct: 36 DLSITFVDPEPIACLHERWMNLEGPTDVMSFPMDELTPGSDEKVSEGMLGDLVICPWVAQ 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH ++ M GL+R ++ Sbjct: 96 QQALAAGHSTMEEMLLLTIHGILHLLGYDHTTPEEEKQMFGLQRQLM 142 >gi|145558838|sp|A1K3J2|RRMF_AZOSB RecName: Full=Probable rRNA maturation factor gi|119669484|emb|CAL93397.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 252 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 22/172 (12%) Query: 5 KVNLPRLDLQIAV-----ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSL 59 LP L L++ + A + +R + E+++ Sbjct: 96 AAKLPVLTLEVQKALDGGDKAAAPKKHQIRRWAQAALRT---------------DAEVTV 140 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEIIEIEANV 117 LN YRG D TNVL+F ++GD+VL ++ EA Sbjct: 141 RLVGETEGRALNLGYRGKDYATNVLTFVYGEEGGAPAVEGMPLMGDLVLCVPVVVREAAE 200 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 GK + H HL++HG LHL G DH DD +A ME E +IL LG +PY Sbjct: 201 QGKALDAHFAHLVVHGMLHLQGLDHEDDAEAEAMETAETNILRGLGYANPYA 252 >gi|49388540|dbj|BAD25662.1| haloacid dehalogenase-like hydrolase-like [Oryza sativa Japonica Group] gi|49388674|dbj|BAD25858.1| haloacid dehalogenase-like hydrolase-like [Oryza sativa Japonica Group] Length = 543 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 16/149 (10%) Query: 10 RLDLQIAVENALWGDEI------HLRTLCEVVFAKAVSNLISKGYFVKEN---------I 54 L++QI +E AL D L+ A +L + Y ++N Sbjct: 99 ELNVQIGIEEALPDDPTILSIAEALQMDVAKAAKVAFDHLENSEYKTRDNCISDVNKYDT 158 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+S++ D I LN E+R D T+VLS D L LGDIV++ + + + Sbjct: 159 VEVSILLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGLD-IPILQLGDIVISIDTAQRQ 217 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 A G + + L++HG LHLLG+DH Sbjct: 218 AEERGHTLHDEIRILMVHGLLHLLGFDHE 246 >gi|313897363|ref|ZP_07830906.1| translation metalloprotein YbeY [Clostridium sp. HGF2] gi|312957733|gb|EFR39358.1| translation metalloprotein YbeY [Clostridium sp. HGF2] Length = 155 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 3/108 (2%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIE 114 S++F I +N +YRGID+PT+V+SF + LGDI + E I + Sbjct: 41 SVIFVTPQMIHEMNRDYRGIDRPTDVISFAMKDSEDAYEVMEGEEELGDIFINIEAISAQ 100 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 A G + L HG LHLLGYDH+ +D VM L+ IL+D+ Sbjct: 101 AADYGHSLRREVCFLFTHGLLHLLGYDHMTPEDEAVMFQLQDVILDDI 148 >gi|163783493|ref|ZP_02178484.1| hypothetical protein HG1285_08769 [Hydrogenivirga sp. 128-5-R1-1] gi|159881257|gb|EDP74770.1| hypothetical protein HG1285_08769 [Hydrogenivirga sp. 128-5-R1-1] Length = 142 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L + K ++ + ELS++ TD I LN YRG D+PT+VLSFP Sbjct: 11 RRLKKTWLRKRAELIL---RVLGVENSELSILLTDDEEIRELNRVYRGKDRPTDVLSFPI 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKD 147 + L+LGD+V++ + +A LG E + L+ HG +HLLGYDH ++ Sbjct: 68 GE---EVAGRLILGDVVISLDTARRQAEGLGHTLEEEVSRLLAHGIIHLLGYDHELGGEE 124 Query: 148 ACVMEGLERSILEDLG 163 LE + +LG Sbjct: 125 EERFRALEERVNAELG 140 >gi|329116194|ref|ZP_08244911.1| translation metalloprotein YbeY [Streptococcus parauberis NCFD 2020] gi|326906599|gb|EGE53513.1| translation metalloprotein YbeY [Streptococcus parauberis NCFD 2020] Length = 176 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 26/173 (15%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + +++ E EI +T + FA + ++ E+S+ F + R Sbjct: 11 DMYIEMIDETGQVSQEIMKQTKDLLNFAATKT---------GKDQKEMSVTFVTNERSHE 61 Query: 70 LNFEYRGIDKPTNVLS----------FPTAFASSDGCSSLM-------LGDIVLAYEIIE 112 LN EYR D+PT+V+S F +D + M +G++ ++ + + Sbjct: 62 LNLEYRDTDRPTDVISLEYKPEIPILFDQGDMEADPDLAEMMAEFDAYIGELFISIDKAK 121 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH + M L+ IL G+ Sbjct: 122 EQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPAEEKEMFTLQEEILTAYGLT 174 >gi|313891316|ref|ZP_07824934.1| translation metalloprotein YbeY [Streptococcus pseudoporcinus SPIN 20026] gi|313120383|gb|EFR43504.1| translation metalloprotein YbeY [Streptococcus pseudoporcinus SPIN 20026] Length = 165 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 19/159 (11%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 DE L + + K + N +K E E+S+ F + R LN EYR D+PT+V Sbjct: 7 DETGLVSQEIMEQTKDLLNFAAKKTGKSEK--EMSVTFVTTERSHELNLEYRDTDRPTDV 64 Query: 84 LSF------PTAFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHL 126 +S P F SD ++ L G++ ++ + +A G FE + Sbjct: 65 ISLEYKPERPILFEESDLENNPDLAEMLAEFDAYIGELFISVDKAREQAQEYGHSFEREM 124 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 125 GFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLT 163 >gi|218282278|ref|ZP_03488577.1| hypothetical protein EUBIFOR_01159 [Eubacterium biforme DSM 3989] gi|218216746|gb|EEC90284.1| hypothetical protein EUBIFOR_01159 [Eubacterium biforme DSM 3989] Length = 151 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 5/132 (3%) Query: 36 FAKAVSNLISKGYFVKENIVE--LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + K N++ + V E + LS+++ +I +N +YR +D+ T+V+SF S Sbjct: 17 YKKDFENILERACQVLERKGDWSLSVIYVTPEQIHEINRDYRNVDRATDVISFAIQDDMS 76 Query: 94 D---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D LGDI + + I +A+ G L HG LHL+GYDH+ ++D V Sbjct: 77 DMLVDEDQYELGDIFINVQAIRDQASAYGHSIRREACFLFCHGLLHLMGYDHMKEEDEKV 136 Query: 151 MEGLERSILEDL 162 M L+ IL++L Sbjct: 137 MFALQDEILDEL 148 >gi|50913759|ref|YP_059731.1| putative metalloprotease [Streptococcus pyogenes MGAS10394] gi|71910201|ref|YP_281751.1| metalloprotease [Streptococcus pyogenes MGAS5005] gi|94988019|ref|YP_596120.1| putative metalloprotease [Streptococcus pyogenes MGAS9429] gi|94989898|ref|YP_597998.1| putative metalloprotease [Streptococcus pyogenes MGAS10270] gi|94991905|ref|YP_600004.1| putative metalloprotease [Streptococcus pyogenes MGAS2096] gi|94993783|ref|YP_601881.1| metalloprotease [Streptococcus pyogenes MGAS10750] gi|50902833|gb|AAT86548.1| Hypothetical Metal-Binding Protein [Streptococcus pyogenes MGAS10394] gi|71852983|gb|AAZ51006.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS5005] gi|94541527|gb|ABF31576.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS9429] gi|94543406|gb|ABF33454.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS10270] gi|94545413|gb|ABF35460.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS2096] gi|94547291|gb|ABF37337.1| hypothetical metal-binding protein [Streptococcus pyogenes MGAS10750] Length = 182 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 26/179 (14%) Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTD 63 + + + +++ E EI +TL + FA + E+S+ F Sbjct: 11 PSLTINLMYIEMIDETGQVSQEIMEQTLDLLNFA---------AQKTGKEEKEMSVTFVT 61 Query: 64 SHRIETLNFEYRGIDKPTNVLS----------FPTAFASSDGCSSLM-------LGDIVL 106 + R LN EYR D+PT+V+S F ++D + M +G++ + Sbjct: 62 NERSHELNLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFI 121 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + + ++ G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 122 SIDKAREQSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGLT 180 >gi|297598866|ref|NP_001046349.2| Os02g0227000 [Oryza sativa Japonica Group] gi|255670736|dbj|BAF08263.2| Os02g0227000 [Oryza sativa Japonica Group] Length = 361 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 18/151 (11%) Query: 10 RLDLQIAVENALWGDEI--------HLRTLCEVVFAKAVSNLISKGYFVKEN-------- 53 L++QI +E AL D L+ A +L + Y ++N Sbjct: 99 ELNVQIGIEEALPDDPTILVISIAEALQMDVAKAAKVAFDHLENSEYKTRDNCISDVNKY 158 Query: 54 -IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 VE+S++ D I LN E+R D T+VLS D L LGDIV++ + + Sbjct: 159 DTVEVSILLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGLD-IPILQLGDIVISIDTAQ 217 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +A G + + L++HG LHLLG+DH Sbjct: 218 RQAEERGHTLHDEIRILMVHGLLHLLGFDHE 248 >gi|16331480|ref|NP_442208.1| metalloprotease [Synechocystis sp. PCC 6803] gi|2496791|sp|Q55142|RRMF_SYNY3 RecName: Full=Probable rRNA maturation factor gi|1001136|dbj|BAA10278.1| slr0053 [Synechocystis sp. PCC 6803] Length = 179 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 19/170 (11%) Query: 15 IAVENALWGD-----------EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTD 63 IAVE +L D E L + + + L + EL+L+FT Sbjct: 9 IAVELSLQTDLTGSAMASSGVEELLTNPWQGWCQRWLEYLAD--CLPPASSYELTLLFTG 66 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFAS------SDGCSSLMLGDIVLAYEIIEIEANV 117 RI+ LN ++R DKPT+VL+F + L LGDIV++ E + +A Sbjct: 67 DRRIQELNRKFRHQDKPTDVLAFAALEGDFPLIESEETEEPLYLGDIVISLERADHQARE 126 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 G + +V L HG LHLLG+DH D+ M + +L +G N P Sbjct: 127 RGHSAKLEVVWLTAHGLLHLLGWDHPDEASLTTMLSEQSHLLTLIGQNPP 176 >gi|116072020|ref|ZP_01469288.1| hypothetical protein BL107_07709 [Synechococcus sp. BL107] gi|116065643|gb|EAU71401.1| hypothetical protein BL107_07709 [Synechococcus sp. BL107] Length = 180 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 4/138 (2%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 L+ E F ++ +L + V L L FTD I LN E+R PT+VLSF Sbjct: 32 LQQWIE--FIRSNPDLSCPSVVRQAPEVSLGLRFTDDAGITELNSEWRQRSGPTDVLSFA 89 Query: 88 TAFASSDGCSS--LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 + D + LGDI+++ + + +A L LI HG LHLLG+DH D+ Sbjct: 90 ALDDTPDWLEGAAVELGDIIVSLDTAQRQAQDHDHSLGYELHWLISHGLLHLLGWDHPDE 149 Query: 146 KDACVMEGLERSILEDLG 163 + M L+ +L+ G Sbjct: 150 RSLRAMLDLQERLLDSTG 167 >gi|123169874|sp|Q14NW7|RRMF_SPICI RecName: Full=Probable rRNA maturation factor gi|110004475|emb|CAK98812.1| conserved hypothetical upf0054 protein [Spiroplasma citri] Length = 158 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----L 101 K +ELSL+ D+ LN +YR D +V++F + L L Sbjct: 30 KTLLAITEPLELSLIIVDAQEQLELNQKYRHKDYVADVITFALEEENKIDLFELTGLRSL 89 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI + YE +A L HG LH+LGYDH D M L+R +L D Sbjct: 90 GDIFICYEKALAQAAEYNHSPRREFAFLFTHGMLHILGYDHQTPADEEKMFNLQRKVLND 149 Query: 162 LGIN 165 L IN Sbjct: 150 LQIN 153 >gi|312196050|ref|YP_004016111.1| hypothetical protein FraEuI1c_2202 [Frankia sp. EuI1c] gi|311227386|gb|ADP80241.1| protein of unknown function UPF0054 [Frankia sp. EuI1c] Length = 188 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 18/160 (11%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + IA E DE+ L L V N + ELS++ ++ + Sbjct: 1 MSVFIANETGESDVDEVTLAGLARFVLDAMKVN----------PLAELSIMIVETAAMTD 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 L+ Y G D PT+VL+FP A D + +LGD+VL E+ +A G Sbjct: 51 LHVRYMGEDGPTDVLAFPQDEAFESSYADSADNDPATLLGDVVLCPEVARKQAVTAGHSA 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L HG LHLLGYDH + + M L+ +L Sbjct: 111 QRELHLLCTHGILHLLGYDHAEQAEEREMFRLQEDLLTRW 150 >gi|19553485|ref|NP_601487.1| putative metalloprotease [Corynebacterium glutamicum ATCC 13032] gi|62391128|ref|YP_226530.1| metalloprotease [Corynebacterium glutamicum ATCC 13032] gi|26006926|sp|Q8NNB7|RRMF_CORGL RecName: Full=Probable rRNA maturation factor gi|21325058|dbj|BAB99680.1| Predicted metal-dependent hydrolase [Corynebacterium glutamicum ATCC 13032] gi|41326467|emb|CAF20629.1| Predicted metal-dependent hydrolase [Corynebacterium glutamicum ATCC 13032] Length = 196 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 7/125 (5%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCS 97 + G E S+ D I L+ ++ ++ PT+V+SFP Sbjct: 26 ALGEMDIHPDAEASIHIVDVDTIADLHVKWLDLEGPTDVMSFPMDELTPGYSRPDGATPG 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 MLGDIVL E +A G + + L L +HG LHLLGYDHVD + M L+ Sbjct: 86 PAMLGDIVLCPEFAAKQATKAGHDLAHELALLTVHGSLHLLGYDHVDPAEEREMFALQNE 145 Query: 158 ILEDL 162 +L D Sbjct: 146 LLADW 150 >gi|145296242|ref|YP_001139063.1| putative metalloprotease [Corynebacterium glutamicum R] gi|166227674|sp|A4QFZ5|RRMF_CORGB RecName: Full=Probable rRNA maturation factor gi|140846162|dbj|BAF55161.1| hypothetical protein [Corynebacterium glutamicum R] Length = 196 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 7/125 (5%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCS 97 + G E S+ D I L+ ++ ++ PT+V+SFP Sbjct: 26 ALGEMDIHPDAEASIHIVDLDTIADLHVKWLDLEGPTDVMSFPMDELTPGYSRPDGATPG 85 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 MLGDIVL E +A G + + L L +HG LHLLGYDHVD + M L+ Sbjct: 86 PAMLGDIVLCPEFAAKQATKAGHDLAHELALLTVHGSLHLLGYDHVDPAEEREMFALQNE 145 Query: 158 ILEDL 162 +L D Sbjct: 146 LLADW 150 >gi|160915030|ref|ZP_02077243.1| hypothetical protein EUBDOL_01038 [Eubacterium dolichum DSM 3991] gi|158432829|gb|EDP11118.1| hypothetical protein EUBDOL_01038 [Eubacterium dolichum DSM 3991] Length = 155 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIE 114 S++F +I +N EYR ID+PT+V+SF + + S+ LGDI + E I + Sbjct: 41 SVIFVTPQKIHEINREYRHIDRPTDVISFALLDEADEYEIMEDSIELGDIFINIEAIVKQ 100 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A+ G + L HG LHLLGYDH++ ++ VM L+ IL Sbjct: 101 ASEYGHSMRREVCFLFTHGLLHLLGYDHMEQEEERVMFALQDDIL 145 >gi|24379999|ref|NP_721954.1| putative metalloprotease [Streptococcus mutans UA159] gi|29428194|sp|Q8DSY7|RRMF_STRMU RecName: Full=Probable rRNA maturation factor gi|24377987|gb|AAN59260.1|AE014993_4 conserved hypothetical protein [Streptococcus mutans UA159] Length = 164 Score = 137 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +TL + FA + E+++ F + R L Sbjct: 1 MYIEMIDETNQVSEEIKNQTLDILEFA---------AQKTGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNV----------LSFPTAFASSDGCSSLML-------GDIVLAYEIIEI 113 N +YR ++PT+V LSF + D + +L G++ ++ + Sbjct: 52 NLKYRDTNRPTDVISLEYKPESSLSFDEEDLADDPDLAEVLTEFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL+ G+ Sbjct: 112 QAQEYGHSFEREMGFLAVHGFLHINGYDHYTPQEEKEMFSLQEEILDAYGLK 163 >gi|256827192|ref|YP_003151151.1| hypothetical protein Ccur_07650 [Cryptobacterium curtum DSM 15641] gi|256583335|gb|ACU94469.1| conserved hypothetical protein TIGR00043 [Cryptobacterium curtum DSM 15641] Length = 157 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 21/163 (12%) Query: 11 LDLQIAVENALWGDE-IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ I + E + L +L + + A K E+S+ F D RI Sbjct: 1 MDITINYDYGRERVEGMPLESLAQFIIAAE----------GKPASTEVSISFVDDDRIAE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSD----------GCSSLMLGDIVLAYEIIEIEANVLG 119 LN YRG PT+VLSF D G LGDIV+A ++ E + + G Sbjct: 51 LNEAYRGKVGPTDVLSFECDGYDDDFSVNNEADQVGEIPYELGDIVVAVDVAERQTALFG 110 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L+ HG LHL GYDH+ +++A VME E +L Sbjct: 111 TTLAEEIELLVCHGLLHLCGYDHMVEEEAQVMEAREDELLAAW 153 >gi|154498349|ref|ZP_02036727.1| hypothetical protein BACCAP_02338 [Bacteroides capillosus ATCC 29799] gi|150272660|gb|EDM99838.1| hypothetical protein BACCAP_02338 [Bacteroides capillosus ATCC 29799] Length = 164 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 18/166 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++ ++ +E + G E + L +V+ A + ++ + E+ ++FTD I + Sbjct: 1 MNHELIIETEVEGAEPYADLLRQVIPAALEAEGVAVPW-------EVDVLFTDDEGIHQI 53 Query: 71 NFEYRGIDKPTNVLSFPT----------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N E R +D+PT+VLSFP + G + LGD+V++ E + + G Sbjct: 54 NLEQREVDRPTDVLSFPMFDLQPGEHPTEEDADPGTGLVPLGDMVISLERAQAQGEEYGH 113 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKD-ACVMEGLERSILEDLGIN 165 + +L +H LHLLGYDH+D+ M E +ILE LGI Sbjct: 114 GTRREVAYLAVHSVLHLLGYDHMDEGPMKAQMRAREEAILEQLGIT 159 >gi|290580022|ref|YP_003484414.1| hypothetical protein SmuNN2025_0496 [Streptococcus mutans NN2025] gi|254996921|dbj|BAH87522.1| hypothetical protein [Streptococcus mutans NN2025] Length = 166 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +TL + FA + E+++ F + R L Sbjct: 3 MYIEMIDETNQVSEEIKNQTLDILEFA---------AQRTGKEDKEMAVTFVTNERSHEL 53 Query: 71 NFEYRGIDKPTNV----------LSFPTAFASSDGCSSLML-------GDIVLAYEIIEI 113 N +YR ++PT+V LSF + D + +L G++ ++ + Sbjct: 54 NLKYRDTNRPTDVISLEYKPESSLSFDEEDLADDPDLAEVLTEFDAYIGELFISVDKARE 113 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL+ G+ Sbjct: 114 QAQEYGHSFEREMGFLAVHGFLHINGYDHYTPQEEKEMFSLQEEILDAYGLK 165 >gi|294790830|ref|ZP_06755988.1| putative metalloprotease [Scardovia inopinata F0304] gi|294458727|gb|EFG27080.1| putative metalloprotease [Scardovia inopinata F0304] Length = 174 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA---FASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D + L+ + G++ PT+V+SFP D +LGDI+L ++ Sbjct: 36 DLSIAFIDPQPMAELHVRWMGLEGPTDVMSFPMDQLRPGDEDNRPEGLLGDIILCPQVAS 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++A G ++ L IHG LHLLGYDH + M L+R +L Sbjct: 96 MQAAAAGHSTIEEMMLLTIHGVLHLLGYDHKKPDEEKRMFALQRQLL 142 >gi|282898521|ref|ZP_06306511.1| Protein of unknown function UPF0054 [Raphidiopsis brookii D9] gi|281196687|gb|EFA71593.1| Protein of unknown function UPF0054 [Raphidiopsis brookii D9] Length = 174 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 8/137 (5%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 V F++ ++ L K + E+ L T+ +I+ LN +YR D+PT+VL+F + Sbjct: 36 VWFSQWLNLLAVK--LPRALSYEIGLQLTNDAQIQELNAQYRQKDQPTDVLAFAALENNF 93 Query: 94 DGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 L LGDIV++ + +A L L HG LHLLG+DH D++ Sbjct: 94 PYTEEMLASQPLYLGDIVISIDTAIRQAQEREHNLTTELAWLSAHGLLHLLGWDHPDEQS 153 Query: 148 ACVMEGLERSILEDLGI 164 M + +L+ +GI Sbjct: 154 LIEMLNKQSMLLKLVGI 170 >gi|150015729|ref|YP_001307983.1| metalloprotease [Clostridium beijerinckii NCIMB 8052] gi|189040615|sp|A6LRP7|RRMF_CLOB8 RecName: Full=Probable rRNA maturation factor gi|149902194|gb|ABR33027.1| protein of unknown function UPF0054 [Clostridium beijerinckii NCIMB 8052] Length = 167 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 24/164 (14%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 +N + E + L EV + + + + E+SL+F D++ I+ +N E RGI Sbjct: 8 QNKVEASEKLIERLTEV-----IEFALKEEEVNMK--CEISLLFVDNNEIKEINNETRGI 60 Query: 78 DKPTNVLSFPTAFASSD-----------------GCSSLMLGDIVLAYEIIEIEANVLGK 120 ++ T+VLSFP L+LGDIVL+ E ++ Sbjct: 61 NRETDVLSFPMLEYEDKKVFKDMYKDYKFSQSDFDGDELVLGDIVLSLEKALEQSKEFNH 120 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +E +L++H LHLLGYDH++D D +M E IL L I Sbjct: 121 SYEREASYLVVHSVLHLLGYDHMEDDDKIIMRSREEDILNKLNI 164 >gi|320547279|ref|ZP_08041571.1| metalloprotease [Streptococcus equinus ATCC 9812] gi|320448083|gb|EFW88834.1| metalloprotease [Streptococcus equinus ATCC 9812] Length = 165 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +TL + FA E+++ F + R L Sbjct: 1 MYVEMIDETGQVPEEIKNQTLDLLQFA---------AEKTGNENKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNV----------LSFPTAFASSDGCSSLML-------GDIVLAYEIIEI 113 N EYR D+PT+V LSF + + + ML G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPESDLSFSEEDLAENPELAEMLDEFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLK 163 >gi|260892062|ref|YP_003238159.1| protein of unknown function UPF0054 [Ammonifex degensii KC4] gi|260864203|gb|ACX51309.1| protein of unknown function UPF0054 [Ammonifex degensii KC4] Length = 149 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM 100 + ++ VE+ + D I LN YRG D PTNVL+FP L+ Sbjct: 25 AAELALDLLGPRREVEVGVTLLDDTGIRELNRRYRGKDAPTNVLAFPMGEEEP---PVLL 81 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGD+V++ E EA GK E L HL++HG LHLLGYDH D + +M E ++L Sbjct: 82 LGDVVISVETARSEAEEEGKGIEEKLAHLVVHGVLHLLGYDHETDAEEALMREKEEAVLA 141 >gi|322411294|gb|EFY02202.1| putative metalloprotease [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 165 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +T+ + FA + E+S+ F + R L Sbjct: 1 MYIEMIDETGQVSQEIMEQTIDLLNFA---------AQKTGKEEKEMSVTFVTNARSHEL 51 Query: 71 NFEYRGIDKPTNVLS----------FPTAFASSDGCSSLM-------LGDIVLAYEIIEI 113 N EYR D+PT+V+S F ++D + M +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPETPILFSQDDLAADPSLAEMMAEFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAQDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLT 163 >gi|171780164|ref|ZP_02921068.1| hypothetical protein STRINF_01952 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281512|gb|EDT46947.1| hypothetical protein STRINF_01952 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 165 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +TL + FA + E+++ F + R L Sbjct: 1 MYVEMIDETGQVSEEIKNQTLDLLQFA---------AEKTGKENKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLS----------FPTAFASSDGCSSLML-------GDIVLAYEIIEI 113 N EYR D+PT+V+S F + + + ML G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPESDLTFSEEDLAENPELAEMLDEFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L++HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAKEYGHSFEREMGFLVVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLK 163 >gi|145558833|sp|Q0KE95|RRMF_CUPNH RecName: Full=Probable rRNA maturation factor Length = 198 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 12/159 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L++ ++N + + + + + + L++ F D TLN Sbjct: 49 LELEIQNGD-----GVGKRAGLPPRRKIETWVKSALYADAA---LTIRFVDEEEGRTLNR 100 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 YRG D TNVL+F A D + GDIVL ++E EA K E H HLI+H Sbjct: 101 TYRGKDYATNVLTFAYAENEEDPVT----GDIVLCCPVVETEAREQRKPLEAHYAHLIVH 156 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 G LH GY+H +D +A ME +E L+ LG DPY+ D Sbjct: 157 GVLHAQGYEHEEDAEAEEMEAIETETLQALGYADPYQGD 195 >gi|118594512|ref|ZP_01551859.1| hypothetical protein MB2181_02550 [Methylophilales bacterium HTCC2181] gi|118440290|gb|EAV46917.1| hypothetical protein MB2181_02550 [Methylophilales bacterium HTCC2181] Length = 153 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 7/119 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 K+ + L++ + LN YR ++K TNVLSF ++GD+VL + Sbjct: 33 FKDCNLTLTIRLVGESESKNLNNSYRNLNKATNVLSFQIE-------DKPIIGDLVLCHA 85 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 I++ EA + K+ +H HL+IHG LHL+G DH ++ DA ME E +LE LGI +PY Sbjct: 86 IVKKEARIQRKKIHDHYAHLLIHGCLHLMGLDHENEDDADAMEKKEILLLEKLGIKNPY 144 >gi|152967330|ref|YP_001363114.1| metalloprotease [Kineococcus radiotolerans SRS30216] gi|189040137|sp|A6WDG1|RRMF_KINRD RecName: Full=Probable rRNA maturation factor gi|151361847|gb|ABS04850.1| protein of unknown function UPF0054 [Kineococcus radiotolerans SRS30216] Length = 173 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 9/123 (7%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYE 109 + ELS++ D + L+ ++ PT+V+SFP +LGD+V+ + Sbjct: 38 LAELSVLMVDVEAMARLHVQWMDEPGPTDVMSFPMDQLRPGREGRTSEPGLLGDVVVCPQ 97 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI----LEDLGIN 165 + +A G + ++ L+ HG LHLLGYDH + + M L+R + L +G Sbjct: 98 VAAEQAKASGHATADEVLLLVAHGILHLLGYDHAEPDEEREMFTLQRRLVLGFLARIGRP 157 Query: 166 -DP 167 DP Sbjct: 158 GDP 160 >gi|320353408|ref|YP_004194747.1| pyridoxine 5'-phosphate synthase [Desulfobulbus propionicus DSM 2032] gi|320121910|gb|ADW17456.1| pyridoxine 5'-phosphate synthase [Desulfobulbus propionicus DSM 2032] Length = 392 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIV 105 +K ++S+VF + N +YR + PTNVLSFP A + LGDI+ Sbjct: 29 ARLLKLEGADVSVVFLGDAEMAAYNEQYRRKNGPTNVLSFPAAEGGEGFVAPENELGDIL 88 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDL 162 ++ + EA G + L LIIHG LHL+GYDH +++A M E+ + + L Sbjct: 89 ISVDTARREAGQQGHSLHHRLTQLIIHGMLHLIGYDHERSEEEAVRMWDYEQELFQQL 146 >gi|325068590|ref|ZP_08127263.1| hypothetical protein AoriK_12246 [Actinomyces oris K20] gi|326773546|ref|ZP_08232829.1| metalloprotease [Actinomyces viscosus C505] gi|326636776|gb|EGE37679.1| metalloprotease [Actinomyces viscosus C505] Length = 152 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E D L + V EL+++F D +E L Sbjct: 1 MTTEVINETTTVIDAAEFAALADHVLTAM----------HVSPAAELNIMFIDPEPMEEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHL 126 + + + PT+V+SFP S LGDIVL ++ +A G + Sbjct: 51 HVRWLDLPGPTDVMSFPMDELRPGSADSPTPAGTLGDIVLCPQVAAKQALAAGHSAVEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +HG LHLLGYDH + ++ M L+R +L Sbjct: 111 LLLTVHGILHLLGYDHAEPEEKKEMFDLQRRLL 143 >gi|302381346|ref|YP_003817169.1| hypothetical protein Bresu_0231 [Brevundimonas subvibrioides ATCC 15264] gi|302191974|gb|ADK99545.1| protein of unknown function UPF0054 [Brevundimonas subvibrioides ATCC 15264] Length = 153 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 +++ VE W D I + + E + ++ TD + LN Sbjct: 2 IEVEVEADDWTDAID---------DVEAVVERAAVAALGEQAGGVVVLLTDDATVRDLNA 52 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +RG D+PTNVLSFP A D LGDIVLAY + EA GK HL HL++H Sbjct: 53 RFRGKDRPTNVLSFPAADM-PDTGGPRPLGDIVLAYGVCAGEATAQGKTLTGHLTHLVVH 111 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHLLG DH D+ +A ME ER+IL LG+ DPY Sbjct: 112 GVLHLLGRDHEDEAEAETMEAEERTILARLGVADPY 147 >gi|331270001|ref|YP_004396493.1| hypothetical protein CbC4_1822 [Clostridium botulinum BKT015925] gi|329126551|gb|AEB76496.1| protein of unknown function UPF0054 [Clostridium botulinum BKT015925] Length = 166 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 24/164 (14%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 ++ + DE L T+ E++ N K VK N E+S++F D+ I+ +N E R I Sbjct: 8 QDKIKIDEKILETVKEII------NYTLKEEEVKVN-TEVSVIFIDNSTIKEINKETRDI 60 Query: 78 DKPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 DK T+VLSFP AS L+LGDIVL+ E E ++ G Sbjct: 61 DKVTDVLSFPMLDYLQGKIYKETYKDYEFDASYLDEGELVLGDIVLSLERAEEQSKDFGH 120 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 F + +L +H LHLLGYDH++++D M E ILE I Sbjct: 121 SFLREVCYLTVHSVLHLLGYDHMEEEDKVRMRKREEEILEKFSI 164 >gi|331698255|ref|YP_004334494.1| metalloprotease ybeY [Pseudonocardia dioxanivorans CB1190] gi|326952944|gb|AEA26641.1| metalloprotease ybeY [Pseudonocardia dioxanivorans CB1190] Length = 178 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 17/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ + DE + ++ VEL++ + + L Sbjct: 1 MSIEVANESGIAVDESLIVSVARFALDAM----------GVSPAVELAITAVTTEAMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + PT+V++FP + +LGD+VL +A G Sbjct: 51 HERWMDEPGPTDVMAFPMDELAEETRRPDAPDIGPALLGDVVLCPAFARDQARKAGHGLP 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLGYDH + + M L+ +L + Sbjct: 111 DELHLLTVHGVLHLLGYDHAEPEQEREMFSLQDRLLAEW 149 >gi|309775531|ref|ZP_07670531.1| metalloprotease [Erysipelotrichaceae bacterium 3_1_53] gi|308916625|gb|EFP62365.1| metalloprotease [Erysipelotrichaceae bacterium 3_1_53] Length = 155 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIE 114 S++F I +N EYR ID+PT+V+SF + LGDI + E + + Sbjct: 41 SVIFVTKDAIHEINREYRKIDRPTDVISFALKDSEDSYEVMEGGEELGDIFINTEAVVSQ 100 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 A G + L HG LHLLGYDH+ ++ VM L+ IL+D+ Sbjct: 101 AADYGHTLRREVCFLFTHGLLHLLGYDHMTPEEEAVMFQLQDVILDDI 148 >gi|302335756|ref|YP_003800963.1| protein of unknown function UPF0054 [Olsenella uli DSM 7084] gi|301319596|gb|ADK68083.1| protein of unknown function UPF0054 [Olsenella uli DSM 7084] Length = 168 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-- 96 A+ +L+ + V +S+ R+ LN +R D+ T+VLS Sbjct: 25 AICDLVLEQEGVGRPCA-VSVSIVSDERMRELNRTWRDQDRATDVLSLECERPGDPDLAP 83 Query: 97 -SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LGDIVLA I +A L + L++HG LHLLGYDH+DD +A VME E Sbjct: 84 GEPCELGDIVLAPSYIRRQAQRLSTTEADECRLLLVHGMLHLLGYDHLDDAEAEVMEARE 143 Query: 156 RSILE 160 ++L+ Sbjct: 144 DALLD 148 >gi|330718563|ref|ZP_08313163.1| metal-dependent hydrolase [Leuconostoc fallax KCTC 3537] Length = 160 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 11/129 (8%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----------GCS 97 Y E+S+ F ++ I N +YRG+DKPT+V+SF D Sbjct: 31 YLKLPEDTEMSVTFMNNDAIHEYNKQYRGVDKPTDVISFAIEEDGDDLPVLPDEEMAETL 90 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLER 156 + +GDI+++ +I++ +A+ LG FE L L++HGFLHL GYDH+D+ M L+R Sbjct: 91 AKNIGDILVSIDIVDTQADYLGHSFERELGFLVVHGFLHLNGYDHMDEGPQEKEMFELQR 150 Query: 157 SILEDLGIN 165 IL+D G+ Sbjct: 151 KILDDYGLE 159 >gi|269218582|ref|ZP_06162436.1| putative metalloprotease [Actinomyces sp. oral taxon 848 str. F0332] gi|269211693|gb|EEZ78033.1| putative metalloprotease [Actinomyces sp. oral taxon 848 str. F0332] Length = 164 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 16/155 (10%) Query: 11 LDLQIAVENALWG--DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 + + + E+ D + L V + + EL+++F D + Sbjct: 1 MSIDVNDESGFAPGIDLKEVSDLARFVLDRMRVH----------PAAELNVLFEDEESMA 50 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFEN 124 L+ E+ +D PT+VLSFP LGDIV+ ++ +A G Sbjct: 51 RLHVEWMDLDGPTDVLSFPMDELRPAPIGEEPREGVLGDIVVCPQVAARQAYTAGHAVAE 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ L+ HG LHLLGYDH ++ + M L+R +L Sbjct: 111 EVLLLVTHGILHLLGYDHAEEDERREMFDLQRQLL 145 >gi|154509439|ref|ZP_02045081.1| hypothetical protein ACTODO_01970 [Actinomyces odontolyticus ATCC 17982] gi|293189526|ref|ZP_06608246.1| putative metalloprotease [Actinomyces odontolyticus F0309] gi|153799073|gb|EDN81493.1| hypothetical protein ACTODO_01970 [Actinomyces odontolyticus ATCC 17982] gi|292821616|gb|EFF80555.1| putative metalloprotease [Actinomyces odontolyticus F0309] Length = 149 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 14/150 (9%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ E +E L + V + + E++++F + +E L+ Sbjct: 3 EVINETDYEINEAEFSALADYVLDQM----------HVSSDAEVNIIFIEPEPMEDLHVR 52 Query: 74 YRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 + + PT+V+SFP + MLGDI + ++ +A G ++ L Sbjct: 53 WLDLPGPTDVMSFPMDELRPGTADHPTPPGMLGDICICPQVAARQAAESGHSAAEEMLLL 112 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 HG LHLLGYDH D + VM L+R +L Sbjct: 113 ATHGMLHLLGYDHATDAEREVMFALQRKLL 142 >gi|313682547|ref|YP_004060285.1| hypothetical protein Sulku_1423 [Sulfuricurvum kujiense DSM 16994] gi|313155407|gb|ADR34085.1| protein of unknown function UPF0054 [Sulfuricurvum kujiense DSM 16994] Length = 187 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 15/157 (9%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVK--ENIV------ELSLVFTDSHRIE 68 +E+ ++G I ++ +C + N K Y + E I E+ L+ TD+ I Sbjct: 28 IESPIFGTFISIQNICYNTAMIELDNRTDKTYNFQLLEQIADLLSDREIELILTDNVEIA 87 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 +N E+RGIDK T+VLSFP+ D LG IV++ + + AN L ++ + Sbjct: 88 EINREFRGIDKATDVLSFPS-----DPFPGAPLGSIVISVDKVASVANELKHSEDHEIAL 142 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L IHG LHLLG+DH + D M E ++E + Sbjct: 143 LFIHGMLHLLGFDH--EVDNGEMRQKEIELIETFKLP 177 >gi|254819388|ref|ZP_05224389.1| putative metalloprotease [Mycobacterium intracellulare ATCC 13950] Length = 177 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ + E L ++ V AK N ELS+V D+ + L Sbjct: 1 MSIEVSNESGIDVSEAELISVARHVIAKMDVN----------PAAELSMVLLDTAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL E +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPEFAAGQAAAAGHSLGH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IHG LHL+GYDH + + M L+ +LE+ Sbjct: 111 ELALLTIHGVLHLIGYDHGEPDEEKEMFALQDRLLEEW 148 >gi|294101753|ref|YP_003553611.1| protein of unknown function UPF0054 [Aminobacterium colombiense DSM 12261] gi|293616733|gb|ADE56887.1| protein of unknown function UPF0054 [Aminobacterium colombiense DSM 12261] Length = 178 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 16 AVENALWGDEIHLRTL--CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +V++ LR L CE V + V L Y + E+S+ + ++ +N E Sbjct: 9 SVDDGESESIRALRKLEGCEEVLERVVQRLFQGRY--ENQQAEVSISIVSTTEMQEINRE 66 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSS-----LMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 YRGID+PT+VLSFP + C L LGDI++ E++ A + L Sbjct: 67 YRGIDQPTDVLSFPMWEEGEEFCPPSGWEMLPLGDILICEEVVRENARQNNVSYIEELYL 126 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++ HGFLHLLG DH + +M L+ I ++ Sbjct: 127 IVAHGFLHLLGIDHDTVEKQEMMWSLQSIIRDEW 160 >gi|125571963|gb|EAZ13478.1| hypothetical protein OsJ_03394 [Oryza sativa Japonica Group] Length = 425 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 5/139 (3%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +I L L + + +++ G + K VE+S++ + + I+ LN E+RG D +L Sbjct: 4 KIALDGLLDSNYKTRDTSISDVGRYDK---VEVSVLLCNDNFIQNLNKEWRGEDSCIEML 60 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 S D LMLGDIV++ E +A G + + L + G L LLG+DH Sbjct: 61 SMSQYIPDLD-VPILMLGDIVISVETAARQAEERGHTLLDEVRILAVRGILRLLGFDHQT 119 Query: 145 DKD-ACVMEGLERSILEDL 162 + A ME E+ IL+ L Sbjct: 120 SHESAVEMEKEEQLILKSL 138 >gi|323126736|gb|ADX24033.1| putative metalloprotease [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 165 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +T+ + FA + E+S+ F + R L Sbjct: 1 MYIEMIDETGQVSQEIMEQTIDLLNFA---------AQKTGKEEKEMSVTFVTNARSHEL 51 Query: 71 NFEYRGIDKPTNVLS----------FPTAFASSDGCSSLM-------LGDIVLAYEIIEI 113 N EYR D+PT+V+S F ++D + M +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPETPILFSQDDLAADPSLAEMMAEFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QAEDYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLT 163 >gi|227874777|ref|ZP_03992930.1| metalloprotease [Mobiluncus mulieris ATCC 35243] gi|269976805|ref|ZP_06183780.1| putative metalloprotease [Mobiluncus mulieris 28-1] gi|306818070|ref|ZP_07451801.1| probable metalloprotease [Mobiluncus mulieris ATCC 35239] gi|227844552|gb|EEJ54708.1| metalloprotease [Mobiluncus mulieris ATCC 35243] gi|269935002|gb|EEZ91561.1| putative metalloprotease [Mobiluncus mulieris 28-1] gi|304649034|gb|EFM46328.1| probable metalloprotease [Mobiluncus mulieris ATCC 35239] Length = 150 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L F +S + + Y E++L+ D + L+ + + PT+VLSFP Sbjct: 12 DLDATEFVALISFCLEQLYVSPA--AEVNLMMVDMATMTDLHIRWMDLPGPTDVLSFPMD 69 Query: 90 FASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 + MLGDIVL ++ +A G ++ L +HG LHLLG+DHV + Sbjct: 70 ELTPGQEGQPSAGGMLGDIVLCPDVAAEQARDAGHSAVEEMLLLTVHGLLHLLGFDHVTE 129 Query: 146 KDACVMEGLERSILEDL 162 ++ M L+R +L Sbjct: 130 EEEKTMFTLQRRLLLSF 146 >gi|288817391|ref|YP_003431738.1| putative metalloprotease [Hydrogenobacter thermophilus TK-6] gi|288786790|dbj|BAI68537.1| putative metalloprotease [Hydrogenobacter thermophilus TK-6] Length = 147 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 5/139 (3%) Query: 26 IHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 I +R + + + + + E+S+ TD I LN +YRG D+PT+VL Sbjct: 12 IQIRLHKRSIKKAQIEQISERIAELLGLERAEISIYITDDETIRHLNRDYRGKDEPTDVL 71 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV- 143 SFP + L+LGDIV++++ + +A+ +G E + L+ HGF+HLLGYDH Sbjct: 72 SFPICEKVG---NWLILGDIVISFDTAKKQASQMGHSLEEEIKRLLAHGFVHLLGYDHEL 128 Query: 144 DDKDACVMEGLERSILEDL 162 ++ LE +L++L Sbjct: 129 GGEEERKFFELESYVLKNL 147 >gi|255292981|dbj|BAH90078.1| hypothetical protein [uncultured bacterium] gi|255293017|dbj|BAH90113.1| hypothetical protein [uncultured bacterium] Length = 152 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + I E+ + DE L +L V + + ELS+V D + Sbjct: 1 MTVDINNESGVEVDETGLVSLATFVLDQ----------LRIHPMAELSVVLVDEATMSAY 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + +Y PT+VLSFP + + + +LGD+VL I +A G+E + Sbjct: 51 HEKYMNEPGPTDVLSFPMDELRPPSDDEEPPAGLLGDVVLCPTITSAQAAEHGREPDEEA 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +L++HG LHL+G+DH ++ M GL+ +L Sbjct: 111 EYLLVHGILHLVGFDHGTPEEKAEMFGLKDRLLAAW 146 >gi|254419922|ref|ZP_05033646.1| conserved hypothetical protein TIGR00043, putative [Brevundimonas sp. BAL3] gi|196186099|gb|EDX81075.1| conserved hypothetical protein TIGR00043, putative [Brevundimonas sp. BAL3] Length = 154 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 83/159 (52%), Gaps = 14/159 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I VE W E V KA + ++ ++ TD + LN Sbjct: 2 IEIEVEAEAW---TGALPETEAVVTKAAEAALGAVAG------DVVVLLTDDEAVRELNA 52 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +R D+PTNVLSFP ++ + LGDIVLAY + EA GK +HL HL++H Sbjct: 53 RFRDKDRPTNVLSFPAPESA-----APHLGDIVLAYGVCASEAQAQGKTLSDHLSHLVVH 107 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 G LHLLG DH DD +A ME ER IL +LG++DPY D Sbjct: 108 GVLHLLGRDHEDDAEAEEMEAEEREILAELGVSDPYAAD 146 >gi|223985695|ref|ZP_03635742.1| hypothetical protein HOLDEFILI_03048 [Holdemania filiformis DSM 12042] gi|223962306|gb|EEF66771.1| hypothetical protein HOLDEFILI_03048 [Holdemania filiformis DSM 12042] Length = 162 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 6/131 (4%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD- 94 F + + + K+ +S++F S +I +N +YR +D+PT+V+SF + Sbjct: 30 FQRIAEHAL--EVLNKQGDYTISVIFVKSRKIHEINRDYRQVDRPTDVISFAACDDQDEF 87 Query: 95 ---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + + LGDI + E +A G + + L HG LH GYDH+ + +M Sbjct: 88 ELIEEAEVELGDIFINVEAAISQAEEYGHSLQREICFLFTHGLLHCFGYDHMQPDEEKIM 147 Query: 152 EGLERSILEDL 162 L+ IL+ L Sbjct: 148 FDLQHEILDPL 158 >gi|116511926|ref|YP_809142.1| putative metalloprotease [Lactococcus lactis subsp. cremoris SK11] gi|123125607|sp|Q02ZA2|RRMF_LACLS RecName: Full=Probable rRNA maturation factor gi|116107580|gb|ABJ72720.1| Predicted metal-dependent hydrolase [Lactococcus lactis subsp. cremoris SK11] Length = 162 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 22/169 (13%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +T + FA +L + E+S+ F D+ R L Sbjct: 1 MYVELVDETGQVPSEIIEQTKEVLAFAAKKLDL--------KESTEMSVTFVDNARSHEL 52 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSS--------------LMLGDIVLAYEIIEIEAN 116 N +YR D+PT+V+S S+ +G++ ++ + +A Sbjct: 53 NLQYRETDRPTDVISLEYKPDESEFFFDEDMELPEELLEEMDPFIGELFISIDKAAEQAA 112 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 113 DYGHSIEREYGWLAVHGFLHINGYDHYMPEEESEMFALQEEILTAYGLT 161 >gi|298346301|ref|YP_003718988.1| metalloprotease [Mobiluncus curtisii ATCC 43063] gi|304389934|ref|ZP_07371891.1| probable metalloprotease [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654890|ref|ZP_07907795.1| metalloprotease [Mobiluncus curtisii ATCC 51333] gi|315657186|ref|ZP_07910070.1| metalloprotease [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236362|gb|ADI67494.1| metalloprotease [Mobiluncus curtisii ATCC 43063] gi|304326827|gb|EFL94068.1| probable metalloprotease [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490851|gb|EFU80471.1| metalloprotease [Mobiluncus curtisii ATCC 51333] gi|315492289|gb|EFU81896.1| metalloprotease [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 150 Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEI 110 E++++F D + L+ ++ + PT+VLSFP + ++ +LGDIVL ++ Sbjct: 35 AEVNIMFVDIKTMTDLHVKWMDLPGPTDVLSFPMDELTPGREGVPSAAGVLGDIVLCPDV 94 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L +HG LHLLG+DH + ++ M L+R +L Sbjct: 95 AAEQARDAGHAPIEEMLLLTVHGLLHLLGFDHAEPEEEKTMFTLQRKLL 143 >gi|295110094|emb|CBL24047.1| conserved hypothetical protein TIGR00043 [Ruminococcus obeum A2-162] Length = 164 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 22/170 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI + E L E + +K ++++ + V ++LV TD+ I+ + Sbjct: 1 MTIQI-----DYEAERKLDIDYEKLASKVAAHILETEH--CPYDVCVNLVITDNEEIKRV 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------------GCSSLMLGDIVLAYEIIEIEA 115 N E+R I PT+VLSFP + L+LGD++++ + + +A Sbjct: 54 NTEFRSIGAPTDVLSFPMIPFETPADYSVIEGDDSYFDLDTEELILGDVMISVDKVYAQA 113 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G E L H LHLLGYDH++ +A VME + LEDLGI Sbjct: 114 EEYGHSTEREFSFLFAHSMLHLLGYDHMEPDEAAVMEAKQAKALEDLGIT 163 >gi|312113952|ref|YP_004011548.1| hypothetical protein Rvan_1179 [Rhodomicrobium vannielii ATCC 17100] gi|311219081|gb|ADP70449.1| protein of unknown function UPF0054 [Rhodomicrobium vannielii ATCC 17100] Length = 193 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 8/165 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 R+ I++E+ W L L K V+ + + E+ +S+ ++ + Sbjct: 26 RIGTDISIEDDRWVSVDGLEDL----IPKLVAETLREAGLTPEDAC-VSVALMSGEQVRS 80 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN +R D TNVLSFP+ A+ LGD+ L+Y+ + EA K H Sbjct: 81 LNKVFRSKDADTNVLSFPSPEAARSAVLEDEPAFLGDVALSYDAVVGEAQAQAKTPLQHT 140 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL+ HG LHL+G+DH D DA ME ER IL GI DPY D Sbjct: 141 AHLVAHGVLHLVGFDHEADADADAMEAAERVILARFGIPDPYRDD 185 >gi|302874331|ref|YP_003842964.1| hypothetical protein Clocel_1447 [Clostridium cellulovorans 743B] gi|307689402|ref|ZP_07631848.1| putative metalloprotease [Clostridium cellulovorans 743B] gi|302577188|gb|ADL51200.1| protein of unknown function UPF0054 [Clostridium cellulovorans 743B] Length = 166 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 19/158 (12%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E+ + K + + + E+S+++ D+ I +N + R IDK T+V Sbjct: 9 SEVEVDDDFNGTIRKVIDYALKEEGVNIP--YEISIIYVDNETIRNINSDTRKIDKVTDV 66 Query: 84 LSFPTAFAS-----------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LSFP L+LGDIVL+ E + ++ G + Sbjct: 67 LSFPMLDYPKGQVYKNTYEDQSFHVVDLDDGYLVLGDIVLSLEKAKEQSEEYGHSYLRET 126 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 +L+IH LHLLGYDH+++++ +M E +IL + I Sbjct: 127 CYLVIHSVLHLLGYDHMEEEEKGIMRKREETILSEFSI 164 >gi|169628759|ref|YP_001702408.1| putative metalloprotease [Mycobacterium abscessus ATCC 19977] gi|238688929|sp|B1MN42|RRMF_MYCA9 RecName: Full=Probable rRNA maturation factor gi|169240726|emb|CAM61754.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 170 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + E L ++ A + ELS++ D + L Sbjct: 1 MSIEVVNESGIDVAEGELVSVARFAIAAMDVH----------PAAELSMMLVDLAAMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + + + PT+V+SFP G MLGDIVL + +A G + Sbjct: 51 HMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPSMLGDIVLCPQFAAEQAEAAGHSLAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + ++ M L+ +L+D Sbjct: 111 ELALLTVHGVLHLLGYDHAEPEEEREMFALQNQLLQDW 148 >gi|308750998|gb|ADO44481.1| protein of unknown function UPF0054 [Hydrogenobacter thermophilus TK-6] Length = 144 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 5/139 (3%) Query: 26 IHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 I +R + + + + + E+S+ TD I LN +YRG D+PT+VL Sbjct: 9 IQIRLHKRSIKKAQIEQISERIAELLGLERAEISIYITDDETIRHLNRDYRGKDEPTDVL 68 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV- 143 SFP + L+LGDIV++++ + +A+ +G E + L+ HGF+HLLGYDH Sbjct: 69 SFPICEKVG---NWLILGDIVISFDTAKKQASQMGHSLEEEIKRLLAHGFVHLLGYDHEL 125 Query: 144 DDKDACVMEGLERSILEDL 162 ++ LE +L++L Sbjct: 126 GGEEERKFFELESYVLKNL 144 >gi|324998268|ref|ZP_08119380.1| metal-binding heat shock protein [Pseudonocardia sp. P1] Length = 181 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 17/156 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE + ++ N EL++ +E L Sbjct: 1 MSIEVVNESGIAIDEAQIVSVARYALDAMKVN----------PAAELAITAVALDAMEEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDG-------CSSLMLGDIVLAYEIIEIEANVLGKEFE 123 + + PT+V++FP + DG +LGD+VL +A G Sbjct: 51 HVRWMDEPGPTDVMAFPMDSLADDGRRPDAPDLGPALLGDVVLCPAFARDQARKAGHTLA 110 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L L +HG LHLLGYDH++ D M L+ +L Sbjct: 111 DELHLLTVHGILHLLGYDHLEPDDEREMFALQNRLL 146 >gi|320532466|ref|ZP_08033292.1| conserved hypothetical protein TIGR00043 [Actinomyces sp. oral taxon 171 str. F0337] gi|329946932|ref|ZP_08294344.1| translation metalloprotein YbeY [Actinomyces sp. oral taxon 170 str. F0386] gi|320135319|gb|EFW27441.1| conserved hypothetical protein TIGR00043 [Actinomyces sp. oral taxon 171 str. F0337] gi|328526743|gb|EGF53756.1| translation metalloprotein YbeY [Actinomyces sp. oral taxon 170 str. F0386] Length = 152 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ E D L + V EL+++F D +E L Sbjct: 1 MTTEVINETTTVIDAAEFADLADHVLTAM----------HVSPAAELNIMFIDPEPMEEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + + + PT+V+SFP ++ + LGDIVL ++ +A G + Sbjct: 51 HVRWLDLPGPTDVMSFPMDELRPGSADSPTPAGTLGDIVLCPQVAAKQALAAGHSAVEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +HG LHLLGYDH + ++ M L+R +L Sbjct: 111 LLLTVHGILHLLGYDHAEPEEKKEMFDLQRRLL 143 >gi|307700639|ref|ZP_07637667.1| translation metalloprotein YbeY [Mobiluncus mulieris FB024-16] gi|307614169|gb|EFN93410.1| translation metalloprotein YbeY [Mobiluncus mulieris FB024-16] Length = 148 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 L F +S + + Y E++L+ D + L+ + + PT+VLSFP Sbjct: 10 DLDATEFVALISFCLEQLYVSPA--AEVNLMMVDMATMTDLHIRWMDLPGPTDVLSFPMD 67 Query: 90 FASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 + MLGDIVL ++ +A G ++ L +HG LHLLG+DHV + Sbjct: 68 ELTPGQEGQPSAGGMLGDIVLCPDVAAEQARDAGHSAVEEMLLLTVHGLLHLLGFDHVTE 127 Query: 146 KDACVMEGLERSILEDL 162 ++ M L+R +L Sbjct: 128 EEEKTMFTLQRRLLLSF 144 >gi|189425788|ref|YP_001952965.1| hypothetical protein Glov_2732 [Geobacter lovleyi SZ] gi|189422047|gb|ACD96445.1| protein of unknown function UPF0054 [Geobacter lovleyi SZ] Length = 128 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + ELS+ I LN EY G D+PTNV+SF + LGD+V++ + Sbjct: 4 PDETELSVTVVGDRAIHRLNREYLGKDRPTNVISFSLQEGEFGDLTPHALGDVVISADTA 63 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHV--DDKDACVMEGLERSILEDL 162 EA G L+ L++HG LHL GYDH + +A ME ER I + L Sbjct: 64 ADEAQSCGWGGYERLIFLLLHGILHLTGYDHERSGEAEARRMERKEREIWKLL 116 >gi|166366707|ref|YP_001658980.1| putative metalloprotease [Microcystis aeruginosa NIES-843] gi|166089080|dbj|BAG03788.1| putative metalloprotease [Microcystis aeruginosa NIES-843] Length = 170 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 8/135 (5%) Query: 39 AVSNLIS--KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-- 94 + + Y ELSL TD I+T N +YR D+PT+VL+F T Sbjct: 33 WLETWLGYLSDYLPVAAGYELSLRLTDDREIQTYNCQYRHKDQPTDVLAFATLEVDFPVD 92 Query: 95 ----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 L LGDI+++ E + +A L L H LHLLG+DH D+ Sbjct: 93 ERILETEPLYLGDIIISVETAQQQALTQNHSLARELAWLTAHACLHLLGWDHPDETSLLE 152 Query: 151 MEGLERSILEDLGIN 165 M L+ ++L+ + + Sbjct: 153 MLSLQETLLKTVEMP 167 >gi|2749950|gb|AAC38046.1| unknown [Streptococcus mutans] Length = 164 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E + I +TL + FA + E+++ F + R L Sbjct: 1 MYIEMIDETNQVSEGIKNQTLDILEFA---------AQKTGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNV----------LSFPTAFASSDGCSSLML-------GDIVLAYEIIEI 113 N +YR ++PT+V LSF + D + +L G++ ++ + Sbjct: 52 NLKYRDTNRPTDVISLEYKPESSLSFDEEDLADDPDLAEVLTEFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M L+ IL+ G+ Sbjct: 112 QAQEYGHSFEREMGFLAVHGFLHINGYDHYTPQEEKEMFSLQEEILDAYGLK 163 >gi|158313947|ref|YP_001506455.1| putative metalloprotease [Frankia sp. EAN1pec] gi|238686840|sp|A8KYW3|RRMF_FRASN RecName: Full=Probable rRNA maturation factor gi|158109352|gb|ABW11549.1| protein of unknown function UPF0054 [Frankia sp. EAN1pec] Length = 159 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 18/156 (11%) Query: 15 IAVENALWG-DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +A E+ + DE+ L L V N + ELS++ + + L+ Sbjct: 5 VANESGVTDFDEVTLAALARFVLDTMKVN----------PLAELSVMLVEIDAMTDLHVR 54 Query: 74 YRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 Y + PT+VL+FP S + + +LGD+VL E+ +A G E L Sbjct: 55 YMAEEGPTDVLAFPQDEAFEPSWSESPEEDPTTLLGDVVLCPEVARRQAAQAGHGMEREL 114 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L HG LHLLGYDH + ++ M L+ S+L Sbjct: 115 HILCTHGILHLLGYDHAEPEEEREMWKLQNSLLASW 150 >gi|159026769|emb|CAO89056.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 170 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD------GCSSLML 101 Y ELSL TD I+T N +YR D+PT+VL+F L L Sbjct: 44 YLPLAAGYELSLRLTDDREIQTYNSQYRHKDQPTDVLAFAALEVDLPVDEGILETEPLYL 103 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDI+++ E + +A L L H LHLLG+DH D+ M L+ ++L+ Sbjct: 104 GDIIISVETAQQQALTQNHSLARELAWLTAHACLHLLGWDHPDETSLLEMLSLQETLLKT 163 Query: 162 LGIN 165 + + Sbjct: 164 VEMP 167 >gi|288574806|ref|ZP_06393163.1| protein of unknown function UPF0054 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570547|gb|EFC92104.1| protein of unknown function UPF0054 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 165 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 11/163 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK--GYFVKENIVELSLVFTDSHRIE 68 + L+I + N GD L E V + +S L + + + V +S+ D I Sbjct: 1 MKLEIGISNDE-GDPRPSAILDEEVLSLCISQLFDEVWPQWRMRDSVSISIATVDEETIR 59 Query: 69 TLNFEYRGIDKPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D T+VLSFP F+ + + L LGD+V+ I+ A + ++ Sbjct: 60 QLNNSYRGCDSSTDVLSFPQWEDGVFSPPEEWTELPLGDVVICTSIVNRNAEERNESYDR 119 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS----ILEDLG 163 + ++ H LHLLG+DH + M L+ +E LG Sbjct: 120 EMALMVFHSVLHLLGWDHDTQEKEAAMWSLQEKYRDIAMEKLG 162 >gi|257454806|ref|ZP_05620057.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] gi|257447739|gb|EEV22731.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60] Length = 208 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 3/126 (2%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDI 104 G F+ + VEL + T+ +N + RG D TN+LS+ + + + +L LG++ Sbjct: 83 GEFIFQKTVELEIYVTEPVEARAINLDARGKDYATNILSYASELPEAVLELLPALPLGEL 142 Query: 105 VLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLG 163 V+ + ++ +A GK E HL HL++HG LHLLG+DH + ME +E ++L+ L Sbjct: 143 VICHAVVVSQAAEQGKTVEQHLTHLLVHGMLHLLGFDHELGQAEQDEMEAIEIAVLDKLS 202 Query: 164 INDPYE 169 + +PYE Sbjct: 203 VANPYE 208 >gi|116074016|ref|ZP_01471278.1| hypothetical protein RS9916_36237 [Synechococcus sp. RS9916] gi|116069321|gb|EAU75073.1| hypothetical protein RS9916_36237 [Synechococcus sp. RS9916] Length = 193 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--GCSSLMLGDIVLAY 108 K ++ L L TD I LN +R +PT+VLSF + G L LGDI+++ Sbjct: 59 KASMFSLGLQLTDDATIAELNGNWRQKPEPTDVLSFAALEKAPPFSGDPCLELGDIIVSV 118 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 +A G L L+ HGFLHLLG+DH D+ M + +L + G Sbjct: 119 PTARRQATEHGHALLWELRWLVSHGFLHLLGWDHPDEAQLAAMLRRQEQLLNNGG 173 >gi|308513315|ref|NP_953333.3| hypothetical protein GSU2284 [Geobacter sulfurreducens PCA] gi|39984273|gb|AAR35660.1| conserved hypothetical protein TIGR00043 [Geobacter sulfurreducens PCA] Length = 114 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 2/108 (1%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+V T I +N +Y G D+PTNV+SF + +LGD++++ + EA Sbjct: 1 MSVVITGDLGIRRVNRDYLGKDRPTNVISFAMGEGDFGDLNPDVLGDVIISADTAAREAE 60 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHV--DDKDACVMEGLERSILEDL 162 G F + L L++HG LH+ GYDH + +A ME ER I L Sbjct: 61 EAGIAFWSRLCFLLLHGTLHITGYDHERSGEAEARRMEAKEREIFALL 108 >gi|116492868|ref|YP_804603.1| metal-dependent hydrolase [Pediococcus pentosaceus ATCC 25745] gi|122265668|sp|Q03F61|RRMF_PEDPA RecName: Full=Probable rRNA maturation factor gi|116103018|gb|ABJ68161.1| Predicted metal-dependent hydrolase [Pediococcus pentosaceus ATCC 25745] Length = 156 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 8/129 (6%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----- 99 + Y + E+S+ + I +N EYR +D+PT+V+SF A D Sbjct: 27 AGNYLHLDEETEISVTLMHNDEIHQINKEYRNVDRPTDVISFAINDADEDIIMDPEMAEE 86 Query: 100 ---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +GD++++ + + +A LG +E L L +HGFLHL GYDH++ +D M L++ Sbjct: 87 IPANIGDLMISVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMEKEDQEKMFPLQK 146 Query: 157 SILEDLGIN 165 I+ G+ Sbjct: 147 EIMNAYGLK 155 >gi|326532710|dbj|BAJ89200.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 526 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 16/149 (10%) Query: 10 RLDLQIAVENALWGDEI------HLRTLCEVVFAKAVSNLISKGYFVKE---------NI 54 L +QI +E AL D + LRT A NL + Y ++ + Sbjct: 90 ELSVQIGIEEALPDDPLILSIAETLRTDAGKAMKLAFHNLGNSEYKTRDPCISNVDEYDS 149 Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 VE+SL+ D I LN E+R D T+VLS L LGD+V++ E + Sbjct: 150 VEVSLLLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGL-QIPILQLGDLVISVETARRQ 208 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 A G + + L++HG LHLLG+DH Sbjct: 209 AEERGHALLDEIRILMVHGLLHLLGFDHE 237 >gi|119493099|ref|ZP_01624024.1| hypothetical protein L8106_27841 [Lyngbya sp. PCC 8106] gi|119452844|gb|EAW34019.1| hypothetical protein L8106_27841 [Lyngbya sp. PCC 8106] Length = 196 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 32/188 (17%) Query: 8 LPRLDLQIAVENALWGDEIH----------------------LRTLCEVVFAKAVSNLIS 45 + ++ L++ V++ W E E F + S I Sbjct: 1 MSQVSLEVNVQDCFWLSEESETAPKQQKPPVDGSVENLSCPISPQTWEQWFTQWFS--IL 58 Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-------- 97 + EL+L TD+ I+ LN +YR +D PT+VL+F T Sbjct: 59 NPNIPQVRSYELNLRLTDNTEIQQLNAQYRSLDVPTDVLAFATLEVGFPKLPASEMKASQ 118 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 SL LGD+V++ E +A G + L L HGFLHLLG+DH DD+ M + Sbjct: 119 SLDLGDLVISVETAARQAQQQGHSLKIELGWLAAHGFLHLLGWDHPDDRTLIQMLDQQVI 178 Query: 158 ILEDLGIN 165 +L+ +G+ Sbjct: 179 MLQSVGLE 186 >gi|238060558|ref|ZP_04605267.1| metalloprotease [Micromonospora sp. ATCC 39149] gi|237882369|gb|EEP71197.1| metalloprotease [Micromonospora sp. ATCC 39149] Length = 157 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 19/161 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++IA E+ + D + V A A L G + ELS++ D + L Sbjct: 1 MSIEIANESGVDVD-------TDAVLAVARHALDEMGV---NPLAELSVLLVDIDYMTEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------GCSSLMLGDIVLAYEIIEIEANVLGKE 121 N + G D PT+VL+FP S D G +LGDIVL E+ +A G Sbjct: 51 NHRWMGGDGPTDVLAFPMDEGSVDHGPGESSAAGGEPALLGDIVLCPEVAAKQAATAGHS 110 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L L +HG LHLLGYDH + ++ M L+ +L Sbjct: 111 SADELHLLTVHGVLHLLGYDHAEPEEEREMFELQARLLASW 151 >gi|168023436|ref|XP_001764244.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684684|gb|EDQ71085.1| predicted protein [Physcomitrella patens subsp. patens] Length = 268 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 11/160 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK------GYFVKENIVELSLVFTDS 64 +++ + V++ L DE L V K + L K F + + VELS++ Sbjct: 111 VEVPVIVDDDL--DEADSSLLAVVEQLKLDAPLAVKLAIEGFEDFDQSDTVELSVLLCSD 168 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 RI LN E+R D PT+VLSF + G +LGD+V++ E +A G + Sbjct: 169 SRIRELNKEWRRKDSPTDVLSFSQDQPA--GSPLTLLGDLVISVETAARQAEERGHTLID 226 Query: 125 HLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLG 163 L L +HG LH+L YDH + + ME E IL LG Sbjct: 227 ELRILFVHGLLHVLDYDHELGPEASKEMEEEENRILSALG 266 >gi|295099664|emb|CBK88753.1| conserved hypothetical protein TIGR00043 [Eubacterium cylindroides T2-87] Length = 151 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEI 113 LS++F +I +N EYR ID PT+V+SF SD S LGDI + + I Sbjct: 40 LSVIFVTPEQIHEINKEYRKIDCPTDVISFALQDDLSDVLIEESMCELGDIFINVQAIRD 99 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 +A G L HG LHL+GYDH++ ++ VM L+ IL++ Sbjct: 100 QAKEYGHSLRREACFLFCHGLLHLMGYDHMEPEEEKVMFELQDVILDE 147 >gi|298493060|ref|YP_003723237.1| hypothetical protein Aazo_4995 ['Nostoc azollae' 0708] gi|298234978|gb|ADI66114.1| protein of unknown function UPF0054 ['Nostoc azollae' 0708] Length = 178 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 8/139 (5%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 + F K + L E+ L T+ +I+ LN +YR +KPT+VL+F + Sbjct: 36 WKAWFDKWLEILTPD--LPPALSYEIGLRLTNDTQIQELNAQYRQENKPTDVLAFASLET 93 Query: 92 SSDGCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 L LGDI+++ + +A L L HG LHL+G+DH D+ Sbjct: 94 DFPQSEEMLASQPLYLGDIIVSLDTGNRQAQQQEHSLTTELAWLTAHGLLHLVGWDHPDE 153 Query: 146 KDACVMEGLERSILEDLGI 164 + M + +L+ +GI Sbjct: 154 ESLMEMLKQQVILLDGVGI 172 >gi|322389991|ref|ZP_08063530.1| metalloprotease [Streptococcus parasanguinis ATCC 903] gi|321143304|gb|EFX38743.1| metalloprotease [Streptococcus parasanguinis ATCC 903] Length = 165 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E DEI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSDEILKQTQEILEFA---------AQKIGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPT------AFASSDGCSSLML-----------GDIVLAYEIIEI 113 N EYR D+PT+V+S +F D + L G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEMEISFDEEDLTENPELAEMMAEFDTYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEILTAYGLT 163 >gi|145558817|sp|Q48UW8|RRMF_STRPM RecName: Full=Probable rRNA maturation factor Length = 165 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +TL + FA + E+S+ F + R L Sbjct: 1 MYIEMIDETGQVSQEIMEQTLDLLNFA---------AQKTGKEEKEMSVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSF------PTAFASSDGCSSLML-----------GDIVLAYEIIEI 113 N EYR D+PT+V+S P F+ D + L G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPETPILFSQEDFAADPSLAEMMAEFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGLT 163 >gi|323704189|ref|ZP_08115768.1| protein of unknown function UPF0054 [Thermoanaerobacterium xylanolyticum LX-11] gi|323536255|gb|EGB26027.1| protein of unknown function UPF0054 [Thermoanaerobacterium xylanolyticum LX-11] Length = 159 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 16/152 (10%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D L + E V A+ F D+ I LN YR +DK T+V Sbjct: 13 DAQGLDRIVEDVVRTALEVEGVVDDVEVSVS------FVDNEEIHKLNKYYRNVDKETDV 66 Query: 84 LSFPTAFASSDGCSSL----------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 LSFP +GDIV++ E + +A G F + +L H Sbjct: 67 LSFPLVEFEEIYTDIDEEDDDLDEVQPIGDIVISLEKAKQQAEEYGHSFIREVAYLTAHS 126 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HL+GYDH + + VM E ++ L I Sbjct: 127 MFHLMGYDHETEDEKKVMRAKEEEVMRRLKIE 158 >gi|254423789|ref|ZP_05037507.1| conserved hypothetical protein TIGR00043, putative [Synechococcus sp. PCC 7335] gi|196191278|gb|EDX86242.1| conserved hypothetical protein TIGR00043, putative [Synechococcus sp. PCC 7335] Length = 166 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 F +++L K E+SL T I+ LN ++R +KPT+VLSF Sbjct: 34 WFKTWLADLDPK--ISPIGAYEVSLRLTSDAEIQQLNSDFRQQEKPTDVLSFAALETEIP 91 Query: 95 GCS------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + LGDI+++ E +A E L L HG LHLLG+DH ++ Sbjct: 92 QLQNVYQQQPVYLGDIIVSIETASRQAVENRHSLERELAWLCAHGLLHLLGWDHPNEDRL 151 Query: 149 CVMEGLERSILE 160 M + +L Sbjct: 152 TQMLDRQALLLN 163 >gi|319957260|ref|YP_004168523.1| hypothetical protein Nitsa_1526 [Nitratifractor salsuginis DSM 16511] gi|319419664|gb|ADV46774.1| protein of unknown function UPF0054 [Nitratifractor salsuginis DSM 16511] Length = 142 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L E A+ + E+ ++ TD I LN E+R DK T+VLSFP Sbjct: 3 LLENQTDTAIETAHLEPIAKALTDREIEVILTDDATIRELNREHRDKDKATDVLSFPLE- 61 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 LG +V++ + + +A LG E L L IHG LHLLGYDH D Sbjct: 62 ---GDLPGQPLGSLVISLDHVVQKAGELGHAPEEELALLFIHGLLHLLGYDHETD--RGE 116 Query: 151 MEGLERSILEDLGIN 165 M E ++ G+ Sbjct: 117 MRAKEAELIRRFGLP 131 >gi|168187766|ref|ZP_02622401.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] gi|169294380|gb|EDS76513.1| conserved hypothetical protein [Clostridium botulinum C str. Eklund] Length = 166 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 24/165 (14%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 ++ + DE L TL E++ + E+S+V D++ I+ +N + R I Sbjct: 8 QDKIEIDEKILHTLEEIIKYALKEEEVYVN-------TEVSVVLIDNNTIKEINKQTRDI 60 Query: 78 DKPTNVLSFPTAFASSDGC-----------------SSLMLGDIVLAYEIIEIEANVLGK 120 DK T+VLSFP L+LGDIVL+ E E + G Sbjct: 61 DKVTDVLSFPMLDYPKGETYKEVYKDYEFDASYLDEGELVLGDIVLSLERAEEQRKEFGH 120 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F + +L IH LHLLGYDH++D + +M E IL I Sbjct: 121 SFLREVCYLTIHSVLHLLGYDHMEDDEKIIMRKREEEILNKFSIK 165 >gi|15674590|ref|NP_268764.1| putative metalloprotease [Streptococcus pyogenes M1 GAS] gi|19745597|ref|NP_606733.1| metalloprotease [Streptococcus pyogenes MGAS8232] gi|28896434|ref|NP_802784.1| metalloprotease [Streptococcus pyogenes SSI-1] gi|56808802|ref|ZP_00366516.1| COG0319: Predicted metal-dependent hydrolase [Streptococcus pyogenes M49 591] gi|139474289|ref|YP_001129005.1| metalloprotease [Streptococcus pyogenes str. Manfredo] gi|209558957|ref|YP_002285429.1| putative metalloprotease [Streptococcus pyogenes NZ131] gi|306827876|ref|ZP_07461144.1| probable metalloprotease [Streptococcus pyogenes ATCC 10782] gi|54039916|sp|P67141|RRMF_STRP3 RecName: Full=Probable rRNA maturation factor gi|54039950|sp|P67142|RRMF_STRP8 RecName: Full=Probable rRNA maturation factor gi|54042635|sp|P67140|RRMF_STRP1 RecName: Full=Probable rRNA maturation factor gi|73920979|sp|Q5XDG5|RRMF_STRP6 RecName: Full=Probable rRNA maturation factor gi|145558819|sp|Q1J824|RRMF_STRPF RecName: Full=Probable rRNA maturation factor gi|145558820|sp|Q1JN23|RRMF_STRPC RecName: Full=Probable rRNA maturation factor gi|145558822|sp|Q1JI69|RRMF_STRPD RecName: Full=Probable rRNA maturation factor gi|145558825|sp|Q1JD48|RRMF_STRPB RecName: Full=Probable rRNA maturation factor gi|166231383|sp|A2RG22|RRMF_STRPG RecName: Full=Probable rRNA maturation factor gi|226701662|sp|B5XK72|RRMF_STRPZ RecName: Full=Probable rRNA maturation factor gi|13621700|gb|AAK33485.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|19747723|gb|AAL97232.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|28811685|dbj|BAC64617.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|134272536|emb|CAM30801.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] gi|209540158|gb|ACI60734.1| hypothetical protein Spy49_0401 [Streptococcus pyogenes NZ131] gi|304429924|gb|EFM32965.1| probable metalloprotease [Streptococcus pyogenes ATCC 10782] Length = 165 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E EI +TL + FA + E+S+ F + R L Sbjct: 1 MYIEMIDETGQVSQEIMEQTLDLLNFA---------AQKTGKEEKEMSVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLS----------FPTAFASSDGCSSLM-------LGDIVLAYEIIEI 113 N EYR D+PT+V+S F ++D + M +G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPETPILFSQEDLAADPSLAEMMAEFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ G FE + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 112 QSQEYGHSFEREMGFLAVHGFLHINGYDHYTLEEEKEMFTLQEEILTAYGLT 163 >gi|322385837|ref|ZP_08059480.1| metalloprotease [Streptococcus cristatus ATCC 51100] gi|321270122|gb|EFX53039.1| metalloprotease [Streptococcus cristatus ATCC 51100] Length = 165 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEIIKQTQEILEFAAQKTGKENKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLADNPELTEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|301165909|emb|CBW25482.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 206 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 12/145 (8%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 V K + G EL L I+ LN E+R DK T+VLSFP + Sbjct: 58 KVLQKFIQGTELDGRVKNCENFELDLSLCSEDEIKELNSEHRDKDKVTDVLSFPGYDSLR 117 Query: 94 DGCSSLML-------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH-VDD 145 G L + GDIV+ E+ + +A +E LVHL +HGFLHL GYDH + + Sbjct: 118 KGAEDLFIFEENLHFGDIVICREVCQKQAQEFAITYEQELVHLFVHGFLHLCGYDHEISE 177 Query: 146 KDACVMEGLER----SILEDLGIND 166 ++ + LE I E++G+++ Sbjct: 178 EEDKIHFSLEELLVKEIYENMGLDN 202 >gi|291522236|emb|CBK80529.1| conserved hypothetical protein TIGR00043 [Coprococcus catus GD/7] Length = 166 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 19/164 (11%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + + L E + + ++ + + E+++V T + I +N +YR + Sbjct: 4 NIDYEADKKLDFDYEKIIREVINGALD--FEECPYETEVNVVLTTNDEIAMINRDYRDLF 61 Query: 79 KPTNVLSFPT-----------------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 KPT+VLSFP + L+LGDI+L+ + I +A G Sbjct: 62 KPTDVLSFPMIDYVRPGDFSVLEEGLTEDFFNPESGELILGDIILSVDKIIEQAASYGHS 121 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L L+ H LHL GYDH+ D++ VME +R IL L + Sbjct: 122 QQRELGFLVAHSMLHLFGYDHMQDEEREVMEEKQRDILNMLNLK 165 >gi|312868384|ref|ZP_07728584.1| translation metalloprotein YbeY [Streptococcus parasanguinis F0405] gi|311096129|gb|EFQ54373.1| translation metalloprotein YbeY [Streptococcus parasanguinis F0405] Length = 165 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E DEI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSDEILKQTQEILEFA---------AQKIGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPT------AFASSDGCSSLML-----------GDIVLAYEIIEI 113 N EYR D+PT+V+S +F D + L G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEMEISFDEEDLAENPELAEMMAEFDTYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEILTAYGLT 163 >gi|270291319|ref|ZP_06197541.1| metalloprotease [Pediococcus acidilactici 7_4] gi|270280165|gb|EFA26001.1| metalloprotease [Pediococcus acidilactici 7_4] Length = 156 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----- 99 + Y + E+S+ + I+ +N EYR +D+PT+V+SF D Sbjct: 27 AGNYLKLDVATEISVTLMHNDEIQKINREYRNVDRPTDVISFAINDEDEDIIMDPEMAEE 86 Query: 100 ---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +GD++++ + + +A LG +E L L +HGFLHL GYDH+ +D M L++ Sbjct: 87 IPDNIGDLMISVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMKKEDQEKMFPLQK 146 Query: 157 SILEDLGIN 165 I+ G+ Sbjct: 147 EIMSAYGLE 155 >gi|322420984|ref|YP_004200207.1| hypothetical protein GM18_3497 [Geobacter sp. M18] gi|320127371|gb|ADW14931.1| protein of unknown function UPF0054 [Geobacter sp. M18] Length = 121 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 2/111 (1%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 ELS+ I LN EY G DK TNV+SF + +LGD+V++ + Sbjct: 5 EAELSISIVGDRAIRVLNREYLGRDKATNVISFAMQEGEFGSVNPDLLGDVVVSVDTAAR 64 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDD--KDACVMEGLERSILEDL 162 EA G+ F + L L++HG LH+ G+DH +A ME ER I L Sbjct: 65 EAEEGGETFLSRLYFLVLHGILHITGFDHERSGVAEAARMEAKEREIFAFL 115 >gi|55820696|ref|YP_139138.1| putative metalloprotease [Streptococcus thermophilus LMG 18311] gi|55822587|ref|YP_141028.1| putative metalloprotease [Streptococcus thermophilus CNRZ1066] gi|116627504|ref|YP_820123.1| putative metalloprotease [Streptococcus thermophilus LMD-9] gi|62901187|sp|Q5M0P3|RRMF_STRT1 RecName: Full=Probable rRNA maturation factor gi|62901191|sp|Q5M579|RRMF_STRT2 RecName: Full=Probable rRNA maturation factor gi|122267898|sp|Q03LJ5|RRMF_STRTD RecName: Full=Probable rRNA maturation factor gi|55736681|gb|AAV60323.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|55738572|gb|AAV62213.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] gi|116100781|gb|ABJ65927.1| Predicted metal-dependent hydrolase [Streptococcus thermophilus LMD-9] gi|312278022|gb|ADQ62679.1| Putative metalloprotease [Streptococcus thermophilus ND03] Length = 165 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + E + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEIKKQTLELLDFAAQKLGKKDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 F D + L G++ ++ + +A G +E + L +H Sbjct: 71 PELDITFDEEDLAENPELAEMMGEFDSYIGELFISIDKAREQAEEYGHSYEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|304385069|ref|ZP_07367415.1| metal-dependent hydrolase [Pediococcus acidilactici DSM 20284] gi|304329263|gb|EFL96483.1| metal-dependent hydrolase [Pediococcus acidilactici DSM 20284] Length = 157 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL----- 99 + Y + E+S+ + I+ +N EYR +D+PT+V+SF D Sbjct: 28 AGNYLKLDVATEISVTLMHNDEIQKINREYRNVDRPTDVISFAINDEDEDIIMDPEMAEE 87 Query: 100 ---MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +GD++++ + + +A LG +E L L +HGFLHL GYDH+ +D M L++ Sbjct: 88 IPDNIGDLMISVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMKKEDQEKMFPLQK 147 Query: 157 SILEDLGIN 165 I+ G+ Sbjct: 148 EIMSAYGLE 156 >gi|296876079|ref|ZP_06900133.1| probable metalloprotease [Streptococcus parasanguinis ATCC 15912] gi|296432790|gb|EFH18583.1| probable metalloprotease [Streptococcus parasanguinis ATCC 15912] Length = 165 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E DEI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSDEILKQTQEILEFAAK---------KIGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPT------AFASSDGCSSLML-----------GDIVLAYEIIEI 113 N EYR D+PT+V+S +F D + L G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEMEISFDEEDLAENPELAEMMAEFDTYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEILTAYGLT 163 >gi|78185693|ref|YP_378127.1| hypothetical protein Syncc9902_2126 [Synechococcus sp. CC9902] gi|123580639|sp|Q3AUM7|RRMF_SYNS9 RecName: Full=Probable rRNA maturation factor gi|78169987|gb|ABB27084.1| Protein of unknown function UPF0054 [Synechococcus sp. CC9902] Length = 180 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 4/138 (2%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 L+ E+V ++ +L + V L L FT+ I LN ++R PT+VLSF Sbjct: 32 LQQWIELV--RSNPDLSCPSVVRQAPEVSLGLHFTNDAGIAELNSQWRQKSGPTDVLSFA 89 Query: 88 TAFASSDGCSSLM--LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 + D LGDI+++ + + +A L LI HG LHLLG+DH D+ Sbjct: 90 ALDDTPDWLEGEAVELGDIIVSVDTAQRQAQNHNHSLGYELHWLISHGLLHLLGWDHPDE 149 Query: 146 KDACVMEGLERSILEDLG 163 + M L+ +L+ G Sbjct: 150 RRLSGMLALQERLLDSTG 167 >gi|56751122|ref|YP_171823.1| putative metalloprotease [Synechococcus elongatus PCC 6301] gi|81299213|ref|YP_399421.1| putative metalloprotease [Synechococcus elongatus PCC 7942] gi|62901410|sp|Q5N317|RRMF_SYNP6 RecName: Full=Probable rRNA maturation factor gi|123557443|sp|Q31R85|RRMF_SYNE7 RecName: Full=Probable rRNA maturation factor gi|56686081|dbj|BAD79303.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168094|gb|ABB56434.1| Protein of unknown function UPF0054 [Synechococcus elongatus PCC 7942] Length = 174 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 11/166 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + L L +Q+A + L ++ + + L + E L F D Sbjct: 1 MALLDLTVQMACSDRL--PDLPWQDWLDRWLTDIQPQLPED---WQAPTYEACLRFVDDA 55 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFAS----SDGCSSLMLGDIVLAYEIIEIEANVLGKE 121 I+ LN +YR +DKPT+VL+F D L LGD++++ + +A G Sbjct: 56 EIQQLNRDYRQLDKPTDVLAFAALEDELALGFDPEEPLYLGDVIISVPTAQRQA--QGHA 113 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 E LV L HG LHLLG+DH +++ M + L+ + + P Sbjct: 114 LETELVWLSAHGLLHLLGWDHPNEEQLAAMLTQQERWLQLVAVPVP 159 >gi|27904874|ref|NP_778000.1| hypothetical protein bbp393 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29428175|sp|P59478|RRMF_BUCBP RecName: Full=Probable rRNA maturation factor gi|27904272|gb|AAO27105.1| hypothetical protein YbeY [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 154 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 12/158 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++QIA + ++ L C+ + + S V ++ +++ + + I++L Sbjct: 7 LNIQIASKKIIF-----LPKKCQYLIW-----IRSSLMHVYQSNIKVLIRIVEKSEIKSL 56 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N+++R +K TN+LSF + +GD+++ EI+ EA E+H H+ Sbjct: 57 NYKFRQKNKATNILSFSYI--NDKMIDKNYIGDLIICSEIVTEEAKKKNVTLESHWAHIT 114 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 IHG LHLLGY+H + + ME LE I+ L +PY Sbjct: 115 IHGILHLLGYNHDNLNNRIKMEYLETKIMASLNYKNPY 152 >gi|283458061|ref|YP_003362672.1| putative metal-dependent hydrolase [Rothia mucilaginosa DY-18] gi|283134087|dbj|BAI64852.1| predicted metal-dependent hydrolase [Rothia mucilaginosa DY-18] Length = 173 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 10/169 (5%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK------GYFVKENIVELSLVFTDSH 65 +++ E G + F + ++++ + LS+ + Sbjct: 3 EIEFDCEEPATGADPATDAFIRESFEAVDTEVLTRLVEHAFKRMHLADDTYLSIAIVNED 62 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 +E ++ E+ + T+V+SFP + SS MLGDI+L + + G Sbjct: 63 EMERVHIEWMDLPGATDVMSFPMDELEPGTPENPSSGMLGDIILCPPVAARQGADAGHST 122 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDPYEV 170 + L L HG LH LGYDH ++ M G++RSILE+ LG P E Sbjct: 123 LDELCLLTTHGILHCLGYDHGTAEEEAEMFGIQRSILEEFLGRPAPVET 171 >gi|17061811|gb|AAK74138.1| C21orf57 isoform A protein [Homo sapiens] Length = 299 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI Sbjct: 165 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 224 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 225 LGVEYIFHQCKE-NEDYNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 281 >gi|159902741|ref|YP_001550085.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9211] gi|238687124|sp|A9BD43|RRMF_PROM4 RecName: Full=Probable rRNA maturation factor gi|159887917|gb|ABX08131.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9211] Length = 189 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 14/168 (8%) Query: 7 NLPRLDLQIA---------VENALWGDEIHLRTLCEVV--FAKAVSNLISKGYFVKENIV 55 N +DL + + N + +E R+ +V + + N + N + Sbjct: 7 NRFEIDLDLVFHSYQDAHLINNIFFNNEALWRSNLKVWIDYVRRNDNYLCPAIVRSVNCL 66 Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 + L FTD I +N ++R ++PT+VLSFP S LGDI+++ + + Sbjct: 67 SIGLQFTDDKSIMKINQQWRAKEEPTDVLSFPVIDQDSIAPPPNHFLELGDIIVSVQTAQ 126 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +A+ + L L+ HG LHLLG+DH+++ M + +L+ Sbjct: 127 KQADENNHSLDKELCWLVSHGLLHLLGWDHLNEHSLDQMLSFQDKLLQ 174 >gi|319778546|ref|YP_004129459.1| metal-dependent hydrolase [Taylorella equigenitalis MCE9] gi|317108570|gb|ADU91316.1| metal-dependent hydrolase [Taylorella equigenitalis MCE9] Length = 162 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 5/143 (3%) Query: 27 HLRTLCEVVFAKAVSNLISKGY-FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 L + + + FV+ + EL+L F LN YR + N+L+ Sbjct: 23 PFEELPRQTLRTWALAAVKRAHEFVEFDSAELNLRFVGPEEARNLNSVYRKKEYVPNILT 82 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + D ++ DI++ +I+ EA GK + H HL++HG LH G+DH+D+ Sbjct: 83 FDYGVDALD----VLRADIIICKDILLKEALDQGKSIKQHACHLVVHGVLHACGFDHMDE 138 Query: 146 KDACVMEGLERSILEDLGINDPY 168 + A ME LE I++ G PY Sbjct: 139 ESAIEMESLEAEIVQSFGFPHPY 161 >gi|73540218|ref|YP_294738.1| putative metalloprotease [Ralstonia eutropha JMP134] gi|72117631|gb|AAZ59894.1| Protein of unknown function UPF0054 [Ralstonia eutropha JMP134] Length = 255 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K + ++ + L++ F D LN YRG D TNVL+F A + D Sbjct: 122 RKQIETWVTSALYADAA---LTVRFVDEEEGRALNRSYRGKDYATNVLTFAYAESEDDPV 178 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + GDIVL ++E EA K E H HLI+HG LH GY+H DD +A ME +E Sbjct: 179 T----GDIVLCCPVVETEAREQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIET 234 Query: 157 SILEDLGINDPYEVD 171 L+ LG DPY D Sbjct: 235 ETLQALGFEDPYRDD 249 >gi|119716145|ref|YP_923110.1| putative metalloprotease [Nocardioides sp. JS614] gi|166227491|sp|A1SHY8|RRMF_NOCSJ RecName: Full=Probable rRNA maturation factor gi|119536806|gb|ABL81423.1| protein of unknown function UPF0054 [Nocardioides sp. JS614] Length = 149 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+ D L L V + + + EL + D I L Sbjct: 1 MSIEILNESGHPLDVKRLAALSRFVMDRMRVH----------PLAELCIKAVDEPTIAQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 N ++ PT+VL+FP + +LGD+VL ++ + G E + Sbjct: 51 NEQWMEKAGPTDVLAFPMDELRPGLVDEDPEEGVLGDLVLCPDVAARQGETAGHGTEAEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L +HG LHLLGYDH + ++ M GL+ +L Sbjct: 111 ELLTVHGILHLLGYDHAEPEEHREMFGLQDELLAAW 146 >gi|171060619|ref|YP_001792968.1| hypothetical protein Lcho_3949 [Leptothrix cholodnii SP-6] gi|170778064|gb|ACB36203.1| protein of unknown function UPF0054 [Leptothrix cholodnii SP-6] Length = 160 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 14/150 (9%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + D H L A+ + + E E ++ D+ + LN +YRG D Sbjct: 20 QFADPRHRAQLPRHHVARWIRAAL-------ELPGEFTVRIVDAEEAQGLNRDYRGKDYA 72 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 TNVL+F + ++ D+VL ++E EA GK H HL++HG LH GY Sbjct: 73 TNVLTFDYS------AEPVVAADLVLCAPVVEAEAAAAGKTLVAHYAHLLVHGALHAQGY 126 Query: 141 DHVDDKDACV-MEGLERSILEDLGINDPYE 169 DH DD++A ME ER +L LG +DPY Sbjct: 127 DHEDDEEAAECMEAREREVLAALGFDDPYA 156 >gi|320094218|ref|ZP_08026022.1| metalloprotease [Actinomyces sp. oral taxon 178 str. F0338] gi|319978843|gb|EFW10382.1| metalloprotease [Actinomyces sp. oral taxon 178 str. F0338] Length = 149 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 14/150 (9%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 ++ E D L + V + + EL+++F + +E L+ + Sbjct: 3 EVLNETDYDIDCAEFAALADYVLTQM----------HVASDAELNILFIGAGPMEELHVK 52 Query: 74 YRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 + + PT+V+SFP + + MLGDI + E+ +A G ++ L Sbjct: 53 WLDLPGPTDVMSFPMDELKPGTADNPTPPGMLGDICICPEVATRQAADSGHTAAEEMLLL 112 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 HG LHLLGYDH +D + M L+R +L Sbjct: 113 ATHGILHLLGYDHAEDAERAEMFALQRKLL 142 >gi|225868114|ref|YP_002744062.1| hypothetical protein SZO_05050 [Streptococcus equi subsp. zooepidemicus] gi|225701390|emb|CAW98464.1| conserved hypothetical protein [Streptococcus equi subsp. zooepidemicus] Length = 181 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 17/154 (11%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS--- 85 + + + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 26 KQVSQEMMEQTIDLLNFAAKTIGKEDKEMAVTFVTNDRSHALNLEYRDTDRPTDVISLEY 85 Query: 86 -------FPTAFASSDGCSSLML-------GDIVLAYEIIEIEANVLGKEFENHLVHLII 131 F D + ML G++ ++ + +A G FE + L + Sbjct: 86 KPELPIAFSQEDLELDPDLAGMLQEFDAYIGELFISVDKAHEQAEAYGHSFEREMGFLAV 145 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 146 HGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLT 179 >gi|319946538|ref|ZP_08020773.1| metalloprotease [Streptococcus australis ATCC 700641] gi|319747284|gb|EFV99542.1| metalloprotease [Streptococcus australis ATCC 700641] Length = 165 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E DEI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSDEILKQTQEILEFA---------AQKIGKEDKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPT------AFASSDGCSSLML-----------GDIVLAYEIIEI 113 N EYR D+PT+V+S +F D + L G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPEMEISFDEEDLEENPELAEMMAEFDTYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEKEMFGLQEEILTAYGLT 163 >gi|224370644|ref|YP_002604808.1| hypothetical protein HRM2_35790 [Desulfobacterium autotrophicum HRM2] gi|223693361|gb|ACN16644.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 155 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +I L + + +S +++ + + ELS+V TD I LN YRG KPTNVL Sbjct: 11 QIKTPKLSKSQINQKLSKILNA---LGYDNHELSVVITDDAHIMALNQTYRGKAKPTNVL 67 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP + + +LGD+V++ E EA+ G + L L+IHG LHL+G+DH Sbjct: 68 SFPMLDSEFTSIAPQLLGDLVISVETAMREADEAGITLDERLSQLMIHGVLHLVGFDHEQ 127 Query: 145 -DKDACVMEGLERSILE 160 + +A ME +L Sbjct: 128 GEDEAVKMEQRSLELLR 144 >gi|315604802|ref|ZP_07879861.1| probable metalloprotease [Actinomyces sp. oral taxon 180 str. F0310] gi|315313473|gb|EFU61531.1| probable metalloprotease [Actinomyces sp. oral taxon 180 str. F0310] Length = 149 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 4/111 (3%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAY 108 + E++++F + +E L+ + + PT+V+SFP + MLGDI + Sbjct: 32 SDAEVNIIFIEPEPMEELHVRWLDLPGPTDVMSFPMDELKPGTADHPTPPGMLGDICICP 91 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ +A G ++ L HG LHLLGYDH D + VM L+R +L Sbjct: 92 QVAARQAAESGHSVAEEMLLLATHGMLHLLGYDHAHDAEREVMFALQRKLL 142 >gi|255327126|ref|ZP_05368201.1| putative metalloprotease AAur_2230 [Rothia mucilaginosa ATCC 25296] gi|255295744|gb|EET75086.1| putative metalloprotease AAur_2230 [Rothia mucilaginosa ATCC 25296] Length = 173 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 6/147 (4%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 + V + V + + + + LS+ + +E ++ E+ + T+V+SFP Sbjct: 27 FEAVDTEVLTRLVEHAFKRMHLADDTY--LSIAIVNEDEMERVHIEWMDLPGATDVMSFP 84 Query: 88 TAFASS---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + SS MLGDI+L + + G + L L HG LH LGYDH Sbjct: 85 MDELEPGTPENPSSGMLGDIILCPPVAARQGADAGHSTLDELCLLTTHGILHCLGYDHGT 144 Query: 145 DKDACVMEGLERSILED-LGINDPYEV 170 ++ M G++RSILE+ LG P E Sbjct: 145 AEEEAEMFGIQRSILEEFLGRPAPVET 171 >gi|304316656|ref|YP_003851801.1| hypothetical protein Tthe_1198 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778158|gb|ADL68717.1| protein of unknown function UPF0054 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 162 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 13/118 (11%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPT-------------AFASSDGCSSLMLGDIVLA 107 F D+ I LN YR +D+ T+VLSFP + D +GDIV++ Sbjct: 44 FVDNEEIHKLNKYYRNVDRETDVLSFPLVEFEEIYSDIDEENYDEDDAAGPEPIGDIVIS 103 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + +A G F + +L H HL+GYDH D + +M E ++ L I Sbjct: 104 LEKAKQQAEEYGHSFIREVAYLTAHSMFHLMGYDHETDDERKIMREKEDEVMRRLKIE 161 >gi|188591271|ref|YP_001795871.1| unkown domain/ metalloprotease fusion protein [Cupriavidus taiwanensis LMG 19424] gi|170938165|emb|CAP63151.1| putative metal-dependent hydrolase, COG0319; putative diacylglycerol kinase [Cupriavidus taiwanensis LMG 19424] Length = 251 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 7/135 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + + + + L++ F TLN YRG D TNVL+F A D Sbjct: 118 RRKLETWVKSALYADAA---LTIRFVGEEEGRTLNRTYRGKDYATNVLTFAYAEREDDPV 174 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + GDIVL ++E EA K E H HL++HG LH GY+H DD +A ME +E Sbjct: 175 T----GDIVLCCPVVEAEARAQRKPLEAHYAHLVVHGVLHAQGYEHEDDAEAEEMEAIET 230 Query: 157 SILEDLGINDPYEVD 171 L+ LG DPY + Sbjct: 231 ETLQALGYADPYRAE 245 >gi|222622464|gb|EEE56596.1| hypothetical protein OsJ_05956 [Oryza sativa Japonica Group] Length = 549 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K + VE+S++ D I LN E+R D T+VLS D L LGDIV++ + Sbjct: 161 KYDTVEVSILLCDDDFIRKLNKEWRDEDHATDVLSMSQHIPGLD-IPILQLGDIVISIDT 219 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +A G + + L++HG LHLLG+DH Sbjct: 220 AQRQAEERGHTLHDEIRILMVHGLLHLLGFDHE 252 >gi|197294661|ref|YP_001799202.1| hypothetical protein PAa_0617 [Candidatus Phytoplasma australiense] gi|226707789|sp|B1VAH8|RRMF_PHYAS RecName: Full=Probable rRNA maturation factor gi|171853988|emb|CAM11951.1| Conserved hypothetical protein [Candidatus Phytoplasma australiense] Length = 144 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 66/125 (52%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM 100 L+ + + + ++ LVF +I+ LN +R + T+VLSFP F+ + Sbjct: 17 QQLLIQLFSQIKENNQMHLVFVTKEKIKQLNTFFRKKNFVTDVLSFPNEFSFNPNLKDDS 76 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGD+ + +E +++A L E + L++HGFLHL GY H ++++ M L+ IL+ Sbjct: 77 LGDVFICFEQAQLQAQKLLHSLEREIAFLVVHGFLHLKGYQHNNEEELEKMIHLQEKILK 136 Query: 161 DLGIN 165 + + Sbjct: 137 KINLE 141 >gi|284106930|ref|ZP_06386310.1| metalloprotease [Candidatus Poribacteria sp. WGA-A3] gi|283830003|gb|EFC34280.1| metalloprotease [Candidatus Poribacteria sp. WGA-A3] Length = 151 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 3/113 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 E E+ + R+ LN YR D+ T+VL+F A + S +LGD+V++ Sbjct: 31 DEAEAEVCIGLVGDTRMRRLNRTYRNQDRTTDVLAFAYREAQTGA--SPLLGDVVISVPA 88 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDL 162 +A + ++ L+IHG LHL+GYDH + A M E E Sbjct: 89 ARRQAKARSHSLDEEVLRLLIHGVLHLVGYDHERSQWQARRMRRKETECFETF 141 >gi|222056179|ref|YP_002538541.1| protein of unknown function UPF0054 [Geobacter sp. FRC-32] gi|221565468|gb|ACM21440.1| protein of unknown function UPF0054 [Geobacter sp. FRC-32] Length = 126 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS+ I +N +Y DK TNV+SF + MLGD+++ + EA Sbjct: 12 ELSISIVGDRTIRRINRDYLDRDKTTNVISFAMHEGDFSEINPQMLGDVIICADTASREA 71 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHV--DDKDACVMEGLERSILEDLG 163 F + L L++HG LH+ GYDH + +A ME ER I +L Sbjct: 72 EEGDMPFFSRLSFLLLHGILHITGYDHERSGETEAARMEFREREIFGNLN 121 >gi|317508757|ref|ZP_07966408.1| hypothetical protein HMPREF9336_02780 [Segniliparus rugosus ATCC BAA-974] gi|316252951|gb|EFV12370.1| hypothetical protein HMPREF9336_02780 [Segniliparus rugosus ATCC BAA-974] Length = 180 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++A E+ L E L + + + N ELS++ D+ + L Sbjct: 1 MSVELANESGLAAPEGMLIHVAQFALDQMRVN----------PAAELSMLLVDTSTMAHL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ + PT+VLSFP A DG +LGDIVL E+ +A G E+ Sbjct: 51 HQQWMNLPGPTDVLSFPMDDAEPDGRPDAVEAAQTLLGDIVLCPEVAAEQAEAAGHSTEH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L+ L +HG LH+LGYDH + ++ M GL+ ++E Sbjct: 111 ELIVLTVHGVLHILGYDHAEPEEEAEMFGLQGKLVERW 148 >gi|260886787|ref|ZP_05898050.1| putative metalloprotease [Selenomonas sputigena ATCC 35185] gi|330839401|ref|YP_004413981.1| protein of unknown function UPF0054 [Selenomonas sputigena ATCC 35185] gi|260863386|gb|EEX77886.1| putative metalloprotease [Selenomonas sputigena ATCC 35185] gi|329747165|gb|AEC00522.1| protein of unknown function UPF0054 [Selenomonas sputigena ATCC 35185] Length = 179 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 7/146 (4%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 +++ L E +AV + G E+S+ TD I LN EYR ID+PT+V Sbjct: 10 EDLPLDEGLEAEIRRAVEKV---GEIYDVADAEVSITLTDDAHIHVLNREYRRIDRPTDV 66 Query: 84 LSFPTAFASSDGCSSLM----LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 +SF + + LGDIVL+ E +A G +V L +HG LHLLG Sbjct: 67 ISFALNESEEPAIAGGPAVNVLGDIVLSVERAAAQAADYGHSLRREIVFLTVHGMLHLLG 126 Query: 140 YDHVDDKDACVMEGLERSILEDLGIN 165 YDHV++ + ME +R ++ LG+ Sbjct: 127 YDHVEEAERQEMEEEQRHVMAALGVT 152 >gi|254467928|ref|ZP_05081334.1| conserved hypothetical protein TIGR00043 [beta proteobacterium KB13] gi|207086738|gb|EDZ64021.1| conserved hypothetical protein TIGR00043 [beta proteobacterium KB13] Length = 144 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 74/117 (63%), Gaps = 6/117 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + E+++ T + + LN YR +KPTN+LSF + + ++GD+VL ++I+ Sbjct: 30 KKDAEITVRITAASESQELNHHYRNQNKPTNILSF------NIESNKSLIGDLVLCHDIV 83 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 + EA K+ ++H +HL++HGFLHL+G+DH+++KD +ME +E L+ I +PY Sbjct: 84 KKEAKAQNKKIKDHYIHLVLHGFLHLMGHDHINEKDRLIMEKIEIKTLKLFNIQNPY 140 >gi|157150959|ref|YP_001450012.1| putative metalloprotease [Streptococcus gordonii str. Challis substr. CH1] gi|189040587|sp|A8AW52|RRMF_STRGC RecName: Full=Probable rRNA maturation factor gi|157075753|gb|ABV10436.1| conserved hypothetical protein TIGR00043 [Streptococcus gordonii str. Challis substr. CH1] Length = 165 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E L +EI +T + FA + E+++ F + R L Sbjct: 1 MYIEIVDETGLVSEEIIKQTQDILEFA---------AQKTGKEKKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLML-----------------GDIVLAYEIIEI 113 N EYR D+PT+V+S L G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELDIAVDEEDLLNHPELAEMLDDFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G F+ + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFKREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|15894575|ref|NP_347924.1| putative metalloprotease [Clostridium acetobutylicum ATCC 824] gi|26006917|sp|Q97JI7|RRMF_CLOAB RecName: Full=Probable rRNA maturation factor gi|15024222|gb|AAK79264.1|AE007641_10 Uncharacterized conserved predicted metal-binding protein, YQFG ortholog [Clostridium acetobutylicum ATCC 824] gi|325508707|gb|ADZ20343.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 166 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 60/128 (46%), Gaps = 17/128 (13%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-----------------AFASSDGCS 97 E+S++F D+ I +N E R +DK T+VLSFP Sbjct: 38 YEVSVIFVDNETIREINRENREVDKVTDVLSFPMLEYGEGKVFKDIYEECDFEDEYFDEG 97 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +L+LGDI L+ E E ++ G F +L +H LHL+GYDH+ D+D M E Sbjct: 98 NLVLGDIALSLERAEEQSKEYGHSFLREAAYLTVHSVLHLMGYDHMVDEDKIKMRKREEE 157 Query: 158 ILEDLGIN 165 IL IN Sbjct: 158 ILSHFDIN 165 >gi|306829341|ref|ZP_07462531.1| probable metalloprotease [Streptococcus mitis ATCC 6249] gi|304428427|gb|EFM31517.1| probable metalloprotease [Streptococcus mitis ATCC 6249] Length = 165 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYRG D+PT+V+S Sbjct: 11 QVSQEILQQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRGTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +F D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELDISFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|226443168|ref|NP_001140067.1| metalloprotease C21orf57 [Salmo salar] gi|221221630|gb|ACM09476.1| metalloprotease C21orf57 [Salmo salar] Length = 168 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 7/144 (4%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +L+ + + A+ ++ + + + +L ++ D+ +I+ +N YR + PT+VLSF Sbjct: 7 NLQNVVPLRRARLRKDVETLRHILGIQKFDLGVICVDNRKIQRINNIYRKKNMPTDVLSF 66 Query: 87 PTAFASSDGC-------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 P G L LGDI L E + + ++ L + HG HLLG Sbjct: 67 PFYEELRPGKLPCPLYRDELNLGDIFLGVEYVMKQCQQQSQDLHGILTSVTAHGICHLLG 126 Query: 140 YDHVDDKDACVMEGLERSILEDLG 163 Y H +++ M E IL + Sbjct: 127 YRHETEEEWKEMLQKESYILNEFN 150 >gi|77405165|ref|ZP_00782263.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae H36B] gi|77411675|ref|ZP_00788014.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae CJB111] gi|77162247|gb|EAO73219.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae CJB111] gi|77176167|gb|EAO78938.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae H36B] gi|319745495|gb|EFV97799.1| metalloprotease [Streptococcus agalactiae ATCC 13813] Length = 165 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + E + + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEDIKKQTLDLLEFAAQKTGKENKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +F D + L G++ ++ + + +A G +E + L +H Sbjct: 71 PEVDISFDEEDLTENPELAEMLEDFDSYIGELFISIDKAKEQAEEYGHSYEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M L+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEKEMFSLQEEILTAYGLK 163 >gi|322372541|ref|ZP_08047077.1| putative metalloprotease Str0617 [Streptococcus sp. C150] gi|321277583|gb|EFX54652.1| putative metalloprotease Str0617 [Streptococcus sp. C150] Length = 165 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + E + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEIKKQTLELLDFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 F D + L G++ ++ + +A G +E + L +H Sbjct: 71 PEVDITFDEEDLAENPELAEMMGEFDSYIGELFISVDKAHEQAEEYGHSYEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|325694803|gb|EGD36708.1| metalloprotease [Streptococcus sanguinis SK150] gi|332362401|gb|EGJ40201.1| metalloprotease [Streptococcus sanguinis SK1056] Length = 165 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKGNKEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|83319995|ref|YP_424481.1| hypothetical protein MCAP_0508 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535679|sp|Q2SRY2|RRMF_MYCCT RecName: Full=Probable rRNA maturation factor gi|83283881|gb|ABC01813.1| conserved hypothetical protein, TIGR00043 [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 164 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--GCSSLML 101 I+ YF +ELS+ F D + + +N +YR +V SFP ++ L Sbjct: 27 IAYNYFNFNYDIELSITFVDDLKAQQINQQYRNHSYIADVTSFPVEMTENEIKAIGFREL 86 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 GD+ + + +A + + + L +HGFLHLLGYDH + D +M L+ IL+ Sbjct: 87 GDMFINLSEAKRKAIKYNHDLNSEMGFLFVHGFLHLLGYDHENLDDEKIMFDLQDQILK 145 >gi|22537644|ref|NP_688495.1| metalloprotease [Streptococcus agalactiae 2603V/R] gi|76788021|ref|YP_330133.1| metalloprotease [Streptococcus agalactiae A909] gi|22534530|gb|AAN00368.1|AE014260_24 conserved hypothetical protein TIGR00043 [Streptococcus agalactiae 2603V/R] gi|76563078|gb|ABA45662.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae A909] Length = 161 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS---- 85 + E + + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 7 QVSEDIKKQTLDLLEFAAQKTGKENKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 66 Query: 86 ------FPTAFASSDGCSSLML-------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 F + + + ML G++ ++ + + +A G +E + L +H Sbjct: 67 PEVDISFDEEDLAENPELAEMLEDFDSYIGELFISIDKAKEQAEEYGHSYEREMGFLAVH 126 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M L+ IL G+ Sbjct: 127 GFLHINGYDHYTPEEEKEMFSLQEEILTAYGLK 159 >gi|311113631|ref|YP_003984853.1| metalloprotease [Rothia dentocariosa ATCC 17931] gi|310945125|gb|ADP41419.1| probable metalloprotease [Rothia dentocariosa ATCC 17931] Length = 173 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 10/168 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK------GYFVKENIVELSLVFTDSHR 66 L VE+ L FA + ++S LS+ + Sbjct: 4 LDFHVEDPNEKPGNVTTQLIHDAFASVDTEVLSNLVDYIFAKLFISKDTYLSIAVVGEKQ 63 Query: 67 IETLNFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 +E ++ E+ + T+V+SFP + D + MLGDIVL + + G Sbjct: 64 MEKIHLEWMDLPGATDVMSFPMDELVPGTEDELAQGMLGDIVLCPPVAARQGADAGHSTL 123 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDPYEV 170 + L L HG LH LGYDH ++ M GL+RS+LE LG P E Sbjct: 124 DELCLLTTHGILHCLGYDHGTAQEEAEMFGLQRSLLEGFLGRAAPVET 171 >gi|291401045|ref|XP_002716899.1| PREDICTED: C21orf57 isoform A protein-like [Oryctolagus cuniculus] Length = 164 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L +V D+ I+ +N YRG + PT+VLSFP F D LGDI Sbjct: 33 QTFDLGVVCVDNRSIQRINRVYRGKNAPTDVLSFPFHENLKAGEFPQPDSPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I + +++ + L HG HLLG+ H + + M E +L++L Sbjct: 93 LGVEYIFQQCKD-KEDYYDALAVTATHGLCHLLGFTHSTEAEWRKMYQKEEQVLQEL 148 >gi|86606284|ref|YP_475047.1| hypothetical protein CYA_1624 [Synechococcus sp. JA-3-3Ab] gi|86554826|gb|ABC99784.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab] Length = 198 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E + + + + + ELSL T I LN E+R ID PT+VL+F S Sbjct: 54 EATWHRWFEVWLRELGVT--DPCELSLCLTSDEHIRQLNREFRHIDAPTDVLAFAAEETS 111 Query: 93 SDG-----CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + +LGDIV++ +A G+ L L HG LHLLG+DH D+ Sbjct: 112 TPVELQKITGVRLLGDIVISVPTACAQAKAQGQRLSRELAWLASHGLLHLLGWDHPDELS 171 Query: 148 ACVMEGLERSILEDL 162 M + +L + Sbjct: 172 LQRMLQQQHHLLAAI 186 >gi|325690750|gb|EGD32751.1| metalloprotease [Streptococcus sanguinis SK115] gi|325696182|gb|EGD38073.1| metalloprotease [Streptococcus sanguinis SK160] Length = 165 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E +EI +T + FA + E+++ F + R L Sbjct: 1 MYIEIVDETGQVSEEILKQTQEILEFA---------AQKTGKENKEMAVTFVSNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLML-----------------GDIVLAYEIIEI 113 N EYR D+PT+V+S L G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|73667540|ref|YP_303556.1| hypothetical protein Ecaj_0927 [Ehrlichia canis str. Jake] gi|123614591|sp|Q3YQP7|RRMF_EHRCJ RecName: Full=Probable rRNA maturation factor gi|72394681|gb|AAZ68958.1| protein of unknown function UPF0054 [Ehrlichia canis str. Jake] Length = 154 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 4/133 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F K + N + E +S+V ++ ++ LN+EYR +KPTNVLSFP Sbjct: 21 FVKNIINTSLIDLNIYEYKPIISIVLANNKLLQQLNYEYRKKNKPTNVLSFPYNKLD--- 77 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + LG+I ++ +++ E+ L E+H H++IHG LH+L YDH + D +ME +E Sbjct: 78 -KNCYLGEIFISLDVLMNESVDLNIPIEHHTSHMLIHGLLHILDYDHEEPLDQYIMESIE 136 Query: 156 RSILEDLGINDPY 168 +L+ LGI +PY Sbjct: 137 IKLLDKLGIKNPY 149 >gi|301321025|gb|ADK69668.1| metalloprotein, YbeY family [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 151 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 36 FAKAVSNLISK---GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 F K N I K YF +ELS+ F + + + +N +YR +V SFP Sbjct: 3 FWKKFCNKILKTAYNYFNFNYDIELSITFVNDLKAQQINQQYRNHSYIADVTSFPVEMTE 62 Query: 93 SD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 ++ LGD+ + + +A + + + L +HGFLHLLGYDH D D + Sbjct: 63 NEIKAIGFRELGDMFINLNEAKRKAIKYNHDLNSEMGFLFVHGFLHLLGYDHEDSNDEKI 122 Query: 151 MEGLERSILE 160 M L+ IL+ Sbjct: 123 MFDLQDQILK 132 >gi|269120554|ref|YP_003308731.1| hypothetical protein Sterm_1944 [Sebaldella termitidis ATCC 33386] gi|268614432|gb|ACZ08800.1| protein of unknown function UPF0054 [Sebaldella termitidis ATCC 33386] Length = 152 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 + E + V ++ +S + T + I+ +N EYRG D PT+V+SF Sbjct: 17 MDEEKINEFVDMILEYEKLENTENTYVSFLITTNDVIQNINSEYRGKDTPTDVISFAYNE 76 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + G + LGDI+++ E + +A G E +++ HG LHLLGYDH+DD+D V Sbjct: 77 TENIGPFDI-LGDIIISAEKVTEQAKEYGHSTEREFYYVLCHGMLHLLGYDHIDDEDKKV 135 Query: 151 ME 152 M Sbjct: 136 MR 137 >gi|25011603|ref|NP_735998.1| metalloprotease [Streptococcus agalactiae NEM316] gi|77408558|ref|ZP_00785294.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae COH1] gi|77413993|ref|ZP_00790166.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae 515] gi|54040165|sp|P67139|RRMF_STRA5 RecName: Full=Probable rRNA maturation factor gi|54042634|sp|P67138|RRMF_STRA3 RecName: Full=Probable rRNA maturation factor gi|145572758|sp|Q3K020|RRMF_STRA1 RecName: Full=Probable rRNA maturation factor gi|24413143|emb|CAD47221.1| Unknown [Streptococcus agalactiae NEM316] gi|77159973|gb|EAO71111.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae 515] gi|77172832|gb|EAO75965.1| conserved hypothetical protein TIGR00043 [Streptococcus agalactiae COH1] Length = 165 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS---- 85 + E + + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEDIKKQTLDLLEFAAQKTGKENKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 86 ------FPTAFASSDGCSSLML-------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 F + + + ML G++ ++ + + +A G +E + L +H Sbjct: 71 PEVDISFDEEDLAENPELAEMLEDFDSYIGELFISIDKAKEQAEEYGHSYEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M L+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEKEMFSLQEEILTAYGLK 163 >gi|317125261|ref|YP_004099373.1| hypothetical protein Intca_2136 [Intrasporangium calvum DSM 43043] gi|315589349|gb|ADU48646.1| protein of unknown function UPF0054 [Intrasporangium calvum DSM 43043] Length = 155 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E DE+ L + + +L + D + L Sbjct: 1 MSIDVLNETDERVDELELLACARYCMEQMRVH----------PQADLCIKLVDEPAMSVL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP LGDIVL + +A G + Sbjct: 51 HEQWMDLPGPTDVMSFPMDELRPGREGQEPEEGTLGDIVLCPSVATRQAAEAGHAPMEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH + + M L+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEPDEEREMFELQRQLL 143 >gi|289806764|ref|ZP_06537393.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 98 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 2/91 (2%) Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 TNVLSFP F + G +LGD+++ +++E EA K E H H+++HG LHLLGY Sbjct: 6 TNVLSFP--FEAPPGIEMPLLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHGSLHLLGY 63 Query: 141 DHVDDKDACVMEGLERSILEDLGINDPYEVD 171 DH+DD +A ME LE I+ +G DPY + Sbjct: 64 DHIDDDEAEEMESLETEIMLAMGYEDPYIAE 94 >gi|328946701|gb|EGG40839.1| putative metalloprotease [Streptococcus sanguinis SK1087] Length = 165 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEGILKQTQEILEFAAQKTGKENKEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|42560996|ref|NP_975447.1| hypothetical protein MSC_0461 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|59799038|sp|Q6MTE7|RRMF_MYCMS RecName: Full=Probable rRNA maturation factor gi|42492493|emb|CAE77089.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 164 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 36 FAKAVSNLISK---GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 F K N I K YF +ELS+ F + + + +N +YR +V SFP Sbjct: 16 FWKKFCNKILKTAYNYFNFNYDIELSITFVNDLKAQQINQQYRNHSYIADVTSFPVEMTE 75 Query: 93 SD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 ++ LGD+ + + +A + + + L +HGFLHLLGYDH D D + Sbjct: 76 NEIKAIGFRELGDMFINLNEAKRKAIKYNHDLNSEMGFLFVHGFLHLLGYDHEDSNDEKI 135 Query: 151 MEGLERSILE 160 M L+ IL+ Sbjct: 136 MFDLQDQILK 145 >gi|270292909|ref|ZP_06199120.1| putative metalloprotease [Streptococcus sp. M143] gi|270278888|gb|EFA24734.1| putative metalloprotease [Streptococcus sp. M143] Length = 165 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEILQQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAYEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|300741538|ref|ZP_07071559.1| putative metalloprotease [Rothia dentocariosa M567] gi|300380723|gb|EFJ77285.1| putative metalloprotease [Rothia dentocariosa M567] Length = 173 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 10/168 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISK------GYFVKENIVELSLVFTDSHR 66 L VE+ L FA + ++S LS+ + Sbjct: 4 LDFHVEDPNEKPGNVTTQLVHDAFASVDTEVLSNLVDYIFAKLFISKDTYLSIAVVGEKQ 63 Query: 67 IETLNFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 +E ++ E+ + T+V+SFP + D + MLGDIVL + + G Sbjct: 64 MEKIHLEWMDLPGATDVMSFPMDELVPGTEDELAQGMLGDIVLCPSVAARQGADAGHSTL 123 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDPYEV 170 + L L HG LH LGYDH ++ M GL+RS+LE LG P E Sbjct: 124 DELCLLTTHGILHCLGYDHGTAQEEAEMFGLQRSLLEGFLGRAAPVET 171 >gi|319440586|ref|ZP_07989742.1| metal-binding heat shock protein [Corynebacterium variabile DSM 44702] Length = 183 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 7/117 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDIV 105 + ELS+ D I L+ + + PT+V+SFP + +LGDI+ Sbjct: 34 SSAELSIHIVDLETIADLHVRWLDLPGPTDVMSFPMDELTPGWGRKDGPPPGPGVLGDIM 93 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L + + +A+ G + L L +HG LHLLG+DHV ++ M L+ IL + Sbjct: 94 LCPDFAQGQADKAGHPLAHELDLLTVHGVLHLLGFDHVVPEEEQRMFALQNEILANW 150 >gi|332367329|gb|EGJ45064.1| metalloprotease [Streptococcus sanguinis SK1059] Length = 165 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKEKKEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|325687313|gb|EGD29335.1| metalloprotease [Streptococcus sanguinis SK72] Length = 165 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKENKEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLDDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|195978546|ref|YP_002123790.1| putative metalloprotease [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226701650|sp|B4U460|RRMF_STREM RecName: Full=Probable rRNA maturation factor gi|195975251|gb|ACG62777.1| putative metal-dependent hydrolase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 165 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 17/154 (11%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS--- 85 + + + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 10 KQVSQEMMEQTIDLLNFAAKTIGKEDKEMAVTFVTNDRSHALNLEYRDTDRPTDVISLEY 69 Query: 86 -------FPTAFASSDGCSSLML-------GDIVLAYEIIEIEANVLGKEFENHLVHLII 131 F D + ML G++ ++ + +A G FE + L + Sbjct: 70 KPELPIAFSQEDLELDPDLAGMLQEFDAYIGELFISVDKAHEQAEAYGHSFEREMGFLAV 129 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 130 HGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLT 163 >gi|327474676|gb|EGF20081.1| metalloprotease [Streptococcus sanguinis SK408] Length = 165 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKENKEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|225870933|ref|YP_002746880.1| hypothetical protein SEQ_1635 [Streptococcus equi subsp. equi 4047] gi|225700337|emb|CAW94643.1| conserved hypothetical protein [Streptococcus equi subsp. equi 4047] Length = 181 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-- 86 + + + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 26 KQVSQEMMEQTIDLLNFAAKTIGKEDKEMAVTFVTNDRSHALNLEYRDTDRPTDVISLEY 85 Query: 87 ----PTAFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLII 131 P AF+ D L G++ ++ + +A G FE + L + Sbjct: 86 KPELPIAFSQEDLELDPDLAGMIQEFDAYIGELFISVDKAHEQAEAYGHSFEREMGFLAV 145 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 146 HGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLT 179 >gi|125718418|ref|YP_001035551.1| metalloprotease [Streptococcus sanguinis SK36] gi|166231428|sp|A3CP96|RRMF_STRSV RecName: Full=Probable rRNA maturation factor gi|125498335|gb|ABN45001.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 165 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKENKEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|327460959|gb|EGF07292.1| metalloprotease [Streptococcus sanguinis SK1057] Length = 165 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + + + + L ++ E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSKEILKQTQEILEFAAQKTGKDNKEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|148240663|ref|YP_001226050.1| metal-dependent hydrolase [Synechococcus sp. WH 7803] gi|147849202|emb|CAK24753.1| Predicted metal-dependent hydrolase [Synechococcus sp. WH 7803] Length = 200 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 4/139 (2%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 L E + V + + +E + L L FT I LN +RG+ +PT+VLSF Sbjct: 44 DLCRWLETLRENRVDPTVPELTACEE--ISLGLQFTGDQEIAELNGRWRGLPQPTDVLSF 101 Query: 87 PTAFASSD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + ++L LGDIV++ +A G E L L+ HG LHLLG+DH D Sbjct: 102 AALESEMPLQQTTTLELGDIVVSVPTAARQALEQGHSLERELQWLVSHGLLHLLGWDHPD 161 Query: 145 DKDACVMEGLERSILEDLG 163 + M + +L G Sbjct: 162 EPTLNAMIACQERLLAMAG 180 >gi|293365234|ref|ZP_06611951.1| metalloprotease [Streptococcus oralis ATCC 35037] gi|307703773|ref|ZP_07640714.1| uncharacterized protein family UPF0054 family protein [Streptococcus oralis ATCC 35037] gi|315612996|ref|ZP_07887907.1| metalloprotease [Streptococcus sanguinis ATCC 49296] gi|291316684|gb|EFE57120.1| metalloprotease [Streptococcus oralis ATCC 35037] gi|307622608|gb|EFO01604.1| uncharacterized protein family UPF0054 family protein [Streptococcus oralis ATCC 35037] gi|315315106|gb|EFU63147.1| metalloprotease [Streptococcus sanguinis ATCC 49296] Length = 165 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEILQQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|324993801|gb|EGC25720.1| metalloprotease [Streptococcus sanguinis SK405] gi|324994880|gb|EGC26793.1| metalloprotease [Streptococcus sanguinis SK678] gi|327463075|gb|EGF09396.1| metalloprotease [Streptococcus sanguinis SK1] gi|327490234|gb|EGF22022.1| metalloprotease [Streptococcus sanguinis SK1058] Length = 165 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKEKKEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDVSVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|322374472|ref|ZP_08048986.1| putative metalloprotease [Streptococcus sp. C300] gi|321279972|gb|EFX57011.1| putative metalloprotease [Streptococcus sp. C300] Length = 165 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEILQQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAKEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEETEMFGLQEEILTAYGLT 163 >gi|332358727|gb|EGJ36550.1| metalloprotease [Streptococcus sanguinis SK355] Length = 165 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKEKKEMAVTFVSNDRSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|145558832|sp|Q475N9|RRMF_CUPPJ RecName: Full=Probable rRNA maturation factor Length = 201 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 K + ++ + L++ F D LN YRG D TNVL+F A + D Sbjct: 68 RKQIETWVTSALYADAA---LTVRFVDEEEGRALNRSYRGKDYATNVLTFAYAESEDDPV 124 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + GDIVL ++E EA K E H HLI+HG LH GY+H DD +A ME +E Sbjct: 125 T----GDIVLCCPVVETEAREQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIET 180 Query: 157 SILEDLGINDPYEVD 171 L+ LG DPY D Sbjct: 181 ETLQALGFEDPYRDD 195 >gi|330893093|gb|EGH25754.1| metal-binding heat shock protein [Pseudomonas syringae pv. mori str. 301020] Length = 114 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 14/126 (11%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQIA E + DE R CE+ + ++ EL++ D + Sbjct: 3 ELDLQIASETSA-PDEARFRLWCEMGLRQRSAD------------SELTIRLVDENEGRE 49 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +R + TNVLSFP A D +LGD+V+ ++ EA GK + H H+ Sbjct: 50 LNHTWRHKNYATNVLSFP-ADVPDDMLDIPLLGDLVICVPVVNREAAEQGKSVDAHWAHM 108 Query: 130 IIHGFL 135 +IHG L Sbjct: 109 VIHGCL 114 >gi|251772247|gb|EES52817.1| conserved protein of unknown function [Leptospirillum ferrodiazotrophum] Length = 180 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 V ++ +LSLV + R+ LN YRG T+VLSF S LG+IV++ Sbjct: 30 VGQDHCDLSLVLVNDKRMRELNRTYRGKPSTTDVLSFEGPPGSPPRM-PRFLGEIVISVP 88 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSI 158 +A G E+ L +L+IHG HLLG+DH ++D +M+ E I Sbjct: 89 RAHRQAMTAGLSPEDELSNLLIHGVCHLLGFDHERGEEDQRIMKAEEEKI 138 >gi|262282706|ref|ZP_06060474.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262261997|gb|EEY80695.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 165 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E +EI +T + FA + E+++ F + R L Sbjct: 1 MYIEIVDETGQVSEEIIKQTQDILEFA---------AQKTGKEKKEMAVTFVTNERSYEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLML-----------------GDIVLAYEIIEI 113 N EYR D+PT+V+S L G++ ++ + Sbjct: 52 NLEYRDTDRPTDVISLEYKPELDIAIDEEDLLNHPELAEMLDDFDAYIGELFISVDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|306825400|ref|ZP_07458740.1| probable metalloprotease [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432338|gb|EFM35314.1| probable metalloprotease [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 165 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEILQQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSL-----------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + +G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLLENPEFAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|15828849|ref|NP_326209.1| hypothetical protein MYPU_3780 [Mycoplasma pulmonis UAB CTIP] gi|46577539|sp|Q98QI3|RRMF_MYCPU RecName: Full=Probable rRNA maturation factor gi|14089792|emb|CAC13551.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 149 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 3/142 (2%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 ++ + R + + F K + I + F + + + L+ TD+ + N YR +DK T+V Sbjct: 8 NKSNFRFMYKKEFLKIMD--IIQEKFNFKKRISVDLLITDNKEVRENNLLYRNVDKETDV 65 Query: 84 LSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 LSFP D + LG I++++E I +A + +L H LHLLGYDH Sbjct: 66 LSFPFGDPDFFDHLDFIPLGSIIISHEKIVAQALEFNHSKKREFCYLFTHSLLHLLGYDH 125 Query: 143 VDDKDACVMEGLERSILEDLGI 164 ++ + +M + I+E L I Sbjct: 126 KEEDEEKIMNQYTKEIVEKLNI 147 >gi|324991447|gb|EGC23380.1| metalloprotease [Streptococcus sanguinis SK353] Length = 165 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKENKEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEFGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|206900820|ref|YP_002251042.1| hypothetical protein DICTH_1213 [Dictyoglomus thermophilum H-6-12] gi|206739923|gb|ACI18981.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12] Length = 142 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 5/125 (4%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K + K + N ++S+VF ++ +I LN +YR D PT+VLSF Sbjct: 21 KNFVKEVLKKKGLLPNKYDISVVFVNNEKIRELNSKYRKKDVPTDVLSFSL----GKDPK 76 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 ++G+I ++ + +++ K + + L +HG LH+LGYDH ++D ME E Sbjct: 77 GRIIGEIYISIDTARVQSEENNKNLIDEVAFLTLHGLLHILGYDHEKEEDYREME-KETK 135 Query: 158 ILEDL 162 L L Sbjct: 136 NLISL 140 >gi|293363549|ref|ZP_06610305.1| metalloprotein, YbeY family [Mycoplasma alligatoris A21JP2] gi|292552898|gb|EFF41652.1| metalloprotein, YbeY family [Mycoplasma alligatoris A21JP2] Length = 158 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-SD 94 F K ++NL K +F + V + + F ++ ++ LN+++RG D PT++LSF + ++ Sbjct: 26 FEKILTNL--KTFFSIDKPVMVDVCFVNNDQMRKLNWKHRGKDYPTDILSFGFEDSLINE 83 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 L LG++V++ + ++ +A + +L HG +HL+GYDH + + M + Sbjct: 84 QLPFLHLGELVISVDKVKEQALEFNHSEKREYCYLFTHGLVHLMGYDHELENERIHMNNM 143 Query: 155 ERSILEDLGIN 165 I L I Sbjct: 144 VEEIFSPLNIT 154 >gi|157412539|ref|YP_001483405.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9215] gi|166980256|sp|A8G2I8|RRMF_PROM2 RecName: Full=Probable rRNA maturation factor gi|157387114|gb|ABV49819.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9215] Length = 179 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + E+ W E + ++ K L Y ++ L L + I +LN ++ Sbjct: 34 LIFESIFW--EKVFLSWINIILKKKDYEL--PNYISEKKSFSLGLRIISNQEIASLNKKW 89 Query: 75 RGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + PT+VLSFP S + + LGDI ++ E+ ++ ++ L HG Sbjct: 90 MQKNGPTDVLSFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKHTIYREMIWLASHG 149 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDL 162 FLHLLG++H ++ D M L+ ++ L Sbjct: 150 FLHLLGWEHNNENDLENMLNLQEYLITRL 178 >gi|237753148|ref|ZP_04583628.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229375415|gb|EEO25506.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 146 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 11/132 (8%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + F ++ I K +++ EL +F ++ +I+ LN E+RGIDKPT+VLSFP F Sbjct: 17 LAFLDSIFLEILKDLGLQDKQCEL--LFVENAKIQALNLEFRGIDKPTDVLSFPLEF--- 71 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 SL+LG IV++ E A LG + + L IHG LHLLG+DH + D Sbjct: 72 ----SLLLGSIVISVEFASKIAQELGHSLNDEIALLFIHGVLHLLGFDH--EVDNGEHRE 125 Query: 154 LERSILEDLGIN 165 ER I+E G+ Sbjct: 126 RERKIVEKFGLP 137 >gi|269958362|ref|YP_003328149.1| hypothetical protein ACIS_00135 [Anaplasma centrale str. Israel] gi|269848191|gb|ACZ48835.1| hypothetical protein ACIS_00135 [Anaplasma centrale str. Israel] Length = 154 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 4/132 (3%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 AK V L + + ++ +V + + LN +YRGI K TNVLSF S C Sbjct: 22 AKRVIGLCLSELDITKYDPKVFVVLANDALLLELNSQYRGIHKATNVLSFSYEKLSPGCC 81 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LG+I L+ E I E+ + +H H++IHG LH+LGYDH + ++A M+ LE Sbjct: 82 ----LGEIYLSMERIAEESLEMDVAVRSHFFHMLIHGMLHILGYDHEEPEEATTMQALEV 137 Query: 157 SILEDLGINDPY 168 +L LGI +PY Sbjct: 138 GLLAKLGIRNPY 149 >gi|257068880|ref|YP_003155135.1| hypothetical protein Bfae_17240 [Brachybacterium faecium DSM 4810] gi|256559698|gb|ACU85545.1| conserved hypothetical protein TIGR00043 [Brachybacterium faecium DSM 4810] Length = 153 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E DE L VF E+S++F D +E L Sbjct: 1 MTIEIRNETTTVVDEREFIELARFVFEAM----------HLHPATEMSILFVDEAAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP +LGD+VL + +A G + Sbjct: 51 HVQWLDLPGPTDVMSFPMDELIPGTPQQPAPEGLLGDVVLCPSVAAAQAAEAGHSPVEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +H LHLLGYDH+++ + M L+R +L Sbjct: 111 LLLTVHSILHLLGYDHMEEDERTEMFDLQRKLL 143 >gi|262195532|ref|YP_003266741.1| hypothetical protein Hoch_2305 [Haliangium ochraceum DSM 14365] gi|262078879|gb|ACY14848.1| protein of unknown function UPF0054 [Haliangium ochraceum DSM 14365] Length = 172 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 13/124 (10%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDI 104 +E+SL TD I LN +YRG D PT+VL+F +G L LGD+ Sbjct: 39 PPRPLEVSLRLTDDDEIRALNRDYRGKDTPTDVLAFAMREGPQEGMPPLAAGEAEYLGDL 98 Query: 105 VLAYEIIEIE-ANVLGK------EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +++ + A L+ L HG HLLGYDH DD + M Sbjct: 99 IISVPTAAQQLARKRPMDVPEREPLLAELLFLSAHGLCHLLGYDHQDDAEEAEMNARMAE 158 Query: 158 ILED 161 +L + Sbjct: 159 LLAE 162 >gi|308233980|ref|ZP_07664717.1| hypothetical protein AvagD15_02962 [Atopobium vaginae DSM 15829] gi|328944011|ref|ZP_08241476.1| hypothetical protein HMPREF0091_10701 [Atopobium vaginae DSM 15829] gi|327491980|gb|EGF23754.1| hypothetical protein HMPREF0091_10701 [Atopobium vaginae DSM 15829] Length = 168 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 3/115 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAY 108 + +S+ I TLN +R D+PT+V+S LGDIVLA Sbjct: 37 KRPCNVSISIVTDEHIHTLNKTWRNQDRPTDVISLECERPDDPDLANGEVCELGDIVLAP 96 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I +A+ E+ L+IHG LHLLGYDH+ D +A VME LE +L ++G Sbjct: 97 NYIAHQADSFHMAHEDECRLLLIHGMLHLLGYDHLTDDEAEVMEALEDRLLLEVG 151 >gi|323351168|ref|ZP_08086824.1| metalloprotease [Streptococcus sanguinis VMC66] gi|322122392|gb|EFX94103.1| metalloprotease [Streptococcus sanguinis VMC66] gi|327470589|gb|EGF16045.1| metalloprotease [Streptococcus sanguinis SK330] Length = 165 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKENKEMAVTFVSNARSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELVEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTSEEEAEMFGLQEEILTAYGLT 163 >gi|297822029|ref|XP_002878897.1| hypothetical protein ARALYDRAFT_901259 [Arabidopsis lyrata subsp. lyrata] gi|297324736|gb|EFH55156.1| hypothetical protein ARALYDRAFT_901259 [Arabidopsis lyrata subsp. lyrata] Length = 584 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEV-------VFAKAVSNLISKGYFVKE---------N 53 L + I +E L D++ ++ + E+ A + L Y +E Sbjct: 104 ELSVSICIEEQL-PDDLEIQNIAEMLRLNVPMAMTLAFNGLKDSKYKTRETDIEDLGGYE 162 Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 VELS++ + I LN E+RG D T+VLS LM+GDIV++ E Sbjct: 163 TVELSVMLCNDDFICKLNKEWRGEDHATDVLSMSQHVPEL-KLPVLMMGDIVISVETAAR 221 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +A G + + L+IHG LHLLG+DH Sbjct: 222 QAAERGHTLLDEIRILVIHGLLHLLGFDHE 251 >gi|332358998|gb|EGJ36819.1| metalloprotease [Streptococcus sanguinis SK49] Length = 165 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + E + + L + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEEILKQTQEILEFAAQKTGKEKKEMAVTFVSNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 90 FASSDGCSSLML-----------------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|331266550|ref|YP_004326180.1| putative metalloprotease [Streptococcus oralis Uo5] gi|326683222|emb|CBZ00840.1| putative metalloprotease [Streptococcus oralis Uo5] Length = 165 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSQEILHQTQEILEFAAQKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELDIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|255994494|ref|ZP_05427629.1| putative metalloprotease [Eubacterium saphenum ATCC 49989] gi|255993207|gb|EEU03296.1| putative metalloprotease [Eubacterium saphenum ATCC 49989] Length = 178 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 10/121 (8%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG----------CSSLML 101 ++ +E+S+ F I+ LN +YRG D T+VLSFP + C +ML Sbjct: 56 KDRIEVSVSFVSEDSIKQLNLDYRGKDSITDVLSFPMISTREEFNPEYDVDLGFCDKIML 115 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GD+V+ +A +G+ +V+L IH LHLLG DH+D+ D +M E+ +++ Sbjct: 116 GDVVICLARASKQAADIGQSLSREVVYLFIHSVLHLLGMDHIDEADKEMMRSFEKKVVKK 175 Query: 162 L 162 L Sbjct: 176 L 176 >gi|33239659|ref|NP_874601.1| metal-dependent hydrolase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|46577394|sp|Q7VE08|RRMF_PROMA RecName: Full=Probable rRNA maturation factor gi|33237184|gb|AAP99253.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 195 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 6/150 (4%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + + ++ W + I + + + + NL K + L+FT+ I +N Sbjct: 36 IDLIMDCDTWRNSI--VSWFDCILMQ--PNLTCPQIVRKNRFFSMGLLFTNDLSIRQMNK 91 Query: 73 EYRGIDKPTNVLSFPTAFAS--SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 E+R D+ T+VLSFP L LGDI+++ E +A + + L L+ Sbjct: 92 EWRKKDESTDVLSFPAIDEHIVLPPNQFLELGDIIVSVETAFKQAKIHNHSLMHELRWLV 151 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILE 160 HGFLHLLG+DH M + +L+ Sbjct: 152 SHGFLHLLGWDHPSSASLNEMLSFQELLLK 181 >gi|15902913|ref|NP_358463.1| putative metalloprotease [Streptococcus pneumoniae R6] gi|116516344|ref|YP_816337.1| putative metalloprotease [Streptococcus pneumoniae D39] gi|148984709|ref|ZP_01817977.1| hypothetical protein CGSSp3BS71_01657 [Streptococcus pneumoniae SP3-BS71] gi|148988410|ref|ZP_01819857.1| hypothetical protein CGSSp6BS73_06270 [Streptococcus pneumoniae SP6-BS73] gi|149002518|ref|ZP_01827452.1| hypothetical protein CGSSp14BS69_12356 [Streptococcus pneumoniae SP14-BS69] gi|168483036|ref|ZP_02707988.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|168485919|ref|ZP_02710427.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|168491056|ref|ZP_02715199.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|168494396|ref|ZP_02718539.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|169833180|ref|YP_001694412.1| putative metalloprotease [Streptococcus pneumoniae Hungary19A-6] gi|221231730|ref|YP_002510882.1| hypothetical protein SPN23F_08920 [Streptococcus pneumoniae ATCC 700669] gi|225854471|ref|YP_002735983.1| putative metalloprotease [Streptococcus pneumoniae JJA] gi|225856625|ref|YP_002738136.1| putative metalloprotease [Streptococcus pneumoniae P1031] gi|225858760|ref|YP_002740270.1| putative metalloprotease [Streptococcus pneumoniae 70585] gi|225861146|ref|YP_002742655.1| putative metalloprotease [Streptococcus pneumoniae Taiwan19F-14] gi|237650884|ref|ZP_04525136.1| putative metalloprotease [Streptococcus pneumoniae CCRI 1974] gi|237821334|ref|ZP_04597179.1| putative metalloprotease [Streptococcus pneumoniae CCRI 1974M2] gi|289167811|ref|YP_003446080.1| hypothetical protein smi_0968 [Streptococcus mitis B6] gi|298229557|ref|ZP_06963238.1| putative metalloprotease [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254474|ref|ZP_06978060.1| putative metalloprotease [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503023|ref|YP_003724963.1| metalloprotease [Streptococcus pneumoniae TCH8431/19A] gi|303254434|ref|ZP_07340540.1| putative metalloprotease [Streptococcus pneumoniae BS455] gi|307127482|ref|YP_003879513.1| hypothetical protein SP670_1352 [Streptococcus pneumoniae 670-6B] gi|307704697|ref|ZP_07641596.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK597] gi|307706465|ref|ZP_07643274.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK321] gi|307708602|ref|ZP_07645066.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|307709147|ref|ZP_07645606.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK564] gi|29428192|sp|Q8DQ35|RRMF_STRR6 RecName: Full=Probable rRNA maturation factor gi|122278777|sp|Q04KW1|RRMF_STRP2 RecName: Full=Probable rRNA maturation factor gi|238688290|sp|B1IBC7|RRMF_STRPI RecName: Full=Probable rRNA maturation factor gi|254799900|sp|C1C6U4|RRMF_STRP7 RecName: Full=Probable rRNA maturation factor gi|254799998|sp|C1CRT3|RRMF_STRZT RecName: Full=Probable rRNA maturation factor gi|254807259|sp|B8ZP64|RRMF_STRPJ RecName: Full=Probable rRNA maturation factor gi|254807268|sp|C1CDW2|RRMF_STRZJ RecName: Full=Probable rRNA maturation factor gi|254807292|sp|C1CK48|RRMF_STRZP RecName: Full=Probable rRNA maturation factor gi|15458473|gb|AAK99673.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076920|gb|ABJ54640.1| conserved hypothetical protein TIGR00043 [Streptococcus pneumoniae D39] gi|147759455|gb|EDK66447.1| hypothetical protein CGSSp14BS69_12356 [Streptococcus pneumoniae SP14-BS69] gi|147923100|gb|EDK74215.1| hypothetical protein CGSSp3BS71_01657 [Streptococcus pneumoniae SP3-BS71] gi|147926091|gb|EDK77165.1| hypothetical protein CGSSp6BS73_06270 [Streptococcus pneumoniae SP6-BS73] gi|168995682|gb|ACA36294.1| conserved hypothetical protein [Streptococcus pneumoniae Hungary19A-6] gi|172043366|gb|EDT51412.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00] gi|183571014|gb|EDT91542.1| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00] gi|183574714|gb|EDT95242.1| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04] gi|183575625|gb|EDT96153.1| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06] gi|220674190|emb|CAR68718.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC 700669] gi|225721312|gb|ACO17166.1| conserved hypothetical protein [Streptococcus pneumoniae 70585] gi|225722204|gb|ACO18057.1| conserved hypothetical protein [Streptococcus pneumoniae JJA] gi|225724973|gb|ACO20825.1| conserved hypothetical protein [Streptococcus pneumoniae P1031] gi|225727792|gb|ACO23643.1| conserved hypothetical protein [Streptococcus pneumoniae Taiwan19F-14] gi|288907378|emb|CBJ22215.1| conserved hypothetical protein [Streptococcus mitis B6] gi|298238618|gb|ADI69749.1| metalloprotease [Streptococcus pneumoniae TCH8431/19A] gi|301799943|emb|CBW32526.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141] gi|302598601|gb|EFL65641.1| putative metalloprotease [Streptococcus pneumoniae BS455] gi|306484544|gb|ADM91413.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] gi|307615351|gb|EFN94560.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|307618175|gb|EFN97333.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK321] gi|307620093|gb|EFN99210.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK564] gi|307621744|gb|EFO00782.1| uncharacterized protein family UPF0054 family protein [Streptococcus mitis SK597] gi|327389245|gb|EGE87590.1| hypothetical protein SPAR5_0931 [Streptococcus pneumoniae GA04375] gi|332076241|gb|EGI86707.1| hypothetical protein SPAR68_0966 [Streptococcus pneumoniae GA41301] gi|332201433|gb|EGJ15503.1| hypothetical protein SPAR93_1028 [Streptococcus pneumoniae GA47368] Length = 165 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|228478259|ref|ZP_04062867.1| conserved hypothetical protein [Streptococcus salivarius SK126] gi|228249938|gb|EEK09208.1| conserved hypothetical protein [Streptococcus salivarius SK126] Length = 165 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + E + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSEKLKEQTLELLDFAAQRLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +F + + L G++ ++ + +A G FE + L +H Sbjct: 71 PELDISFDEEELAENPELAEMMGEFDSYIGELFISVDKAHEQAEDYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|238544550|dbj|BAH60902.1| hyphothetical protein [Desulfotignum balticum] Length = 140 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 1/106 (0%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S+V D +I+ LN +RGID+PTNVLSFP + +LGD+V++ + EA Sbjct: 24 EISIVIMDDLQIKELNHSFRGIDRPTNVLSFPMQEGEFSDITPGLLGDVVISAQTAAREA 83 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILE 160 G + + L+IHG LHL+G+DH K DA ME +L Sbjct: 84 QEAGITLDERMSQLLIHGILHLVGFDHETSKADADDMETKSCELLR 129 >gi|318040668|ref|ZP_07972624.1| metal-dependent hydrolase [Synechococcus sp. CB0101] Length = 189 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 14/138 (10%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------- 86 + + L ++ ++ L L I LN ++RG PT+VL+F Sbjct: 51 WLEQMAAELPAE---LQAPAYSLGLSLVGDAEIAELNGDWRGKSGPTDVLAFAAQDDGLD 107 Query: 87 ---PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 P +G +L LGDIV++ E +A G L L HG LHLLG+DH Sbjct: 108 DAPPIPMPDDEGEEALELGDIVISLETAARQAPEHGHSLVEELQFLATHGLLHLLGWDHP 167 Query: 144 DDKDACVMEGLERSILED 161 DD +M + +L + Sbjct: 168 DDASLALMLARQERLLAN 185 >gi|326791149|ref|YP_004308970.1| metalloprotease ybeY [Clostridium lentocellum DSM 5427] gi|326541913|gb|ADZ83772.1| metalloprotease ybeY [Clostridium lentocellum DSM 5427] Length = 166 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 16/129 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---------------- 95 VE+SL D I +N E+R ID+PT+VLSFP G Sbjct: 36 PYEVEVSLTVVDLDAIHEINKEHREIDRPTDVLSFPQIDTEYIGHINWDTLDTASCVNYD 95 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 ++LGDI+L + + +AN G + L+ H HLLGYDH+ ++D M + Sbjct: 96 TEEVILGDIILCADKAKEQANNYGHSLTREVCFLVAHSMFHLLGYDHMTEEDEKTMVRKQ 155 Query: 156 RSILEDLGI 164 S+L+ L I Sbjct: 156 ESVLQCLSI 164 >gi|296393920|ref|YP_003658804.1| hypothetical protein Srot_1510 [Segniliparus rotundus DSM 44985] gi|296181067|gb|ADG97973.1| protein of unknown function UPF0054 [Segniliparus rotundus DSM 44985] Length = 180 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++++ E+ L E L + + + N ELS++ D+ + L Sbjct: 1 MSVELSNESGLSAPEGMLIHVAQFALDQMRVN----------PAAELSMLLVDTTTMAHL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSL------MLGDIVLAYEIIEIEANVLGKEFEN 124 + ++ + PT+VLSFP A DG +LGDIVL E+ +A G E+ Sbjct: 51 HQQWMNLPGPTDVLSFPMDDAEPDGRPDAVEAAQTLLGDIVLCPEVAAEQAEAAGHSAEH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++ L +HG LH+LGYDH + ++ M L+ +++ Sbjct: 111 EMIVLTVHGVLHILGYDHAEPEEEAEMFALQGKLVDRW 148 >gi|68171524|ref|ZP_00544904.1| Protein of unknown function UPF0054 [Ehrlichia chaffeensis str. Sapulpa] gi|88658303|ref|YP_507939.1| hypothetical protein ECH_1155 [Ehrlichia chaffeensis str. Arkansas] gi|123492551|sp|Q2GF44|RRMF_EHRCR RecName: Full=Probable rRNA maturation factor gi|67999052|gb|EAM85723.1| Protein of unknown function UPF0054 [Ehrlichia chaffeensis str. Sapulpa] gi|88599760|gb|ABD45229.1| conserved hypothetical protein TIGR00043 [Ehrlichia chaffeensis str. Arkansas] Length = 154 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F K + N + E +S+V ++ ++ LN+EYR +KPTNVLSFP + Sbjct: 21 FIKKIINTSLIDLNIYEYKPTISVVLANNRLLQKLNYEYRKKNKPTNVLSFPYNKLN--- 77 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LG+I ++ + + E+ L E+H H++IHG LH+L Y+H + + +ME +E Sbjct: 78 -KYCYLGEIFVSLDTLINESTDLNIPIEHHTSHMLIHGLLHILDYNHEEPLEQYIMESIE 136 Query: 156 RSILEDLGINDPY 168 +L+ LGI +PY Sbjct: 137 IKLLDKLGIKNPY 149 >gi|322376462|ref|ZP_08050955.1| putative metalloprotease [Streptococcus sp. M334] gi|321282269|gb|EFX59276.1| putative metalloprotease [Streptococcus sp. M334] Length = 165 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +F D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELEISFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|148998597|ref|ZP_01826037.1| hypothetical protein CGSSp11BS70_06353 [Streptococcus pneumoniae SP11-BS70] gi|149006356|ref|ZP_01830068.1| hypothetical protein CGSSp18BS74_03564 [Streptococcus pneumoniae SP18-BS74] gi|168575629|ref|ZP_02721565.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|307067624|ref|YP_003876590.1| putative metal-dependent hydrolase [Streptococcus pneumoniae AP200] gi|147755595|gb|EDK62642.1| hypothetical protein CGSSp11BS70_06353 [Streptococcus pneumoniae SP11-BS70] gi|147762133|gb|EDK69095.1| hypothetical protein CGSSp18BS74_03564 [Streptococcus pneumoniae SP18-BS74] gi|183578494|gb|EDT99022.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016] gi|306409161|gb|ADM84588.1| Predicted metal-dependent hydrolase [Streptococcus pneumoniae AP200] gi|332075583|gb|EGI86051.1| hypothetical protein SPAR148_0923 [Streptococcus pneumoniae GA17545] gi|332202822|gb|EGJ16891.1| hypothetical protein SPAR69_0936 [Streptococcus pneumoniae GA41317] Length = 165 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSKEMLQQTQEILEFAAKKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|15900844|ref|NP_345448.1| putative metalloprotease [Streptococcus pneumoniae TIGR4] gi|111657971|ref|ZP_01408678.1| hypothetical protein SpneT_02000860 [Streptococcus pneumoniae TIGR4] gi|149010387|ref|ZP_01831758.1| hypothetical protein CGSSp19BS75_03512 [Streptococcus pneumoniae SP19-BS75] gi|182683913|ref|YP_001835660.1| hypothetical protein SPCG_0943 [Streptococcus pneumoniae CGSP14] gi|303259879|ref|ZP_07345854.1| hypothetical protein CGSSp9vBS293_10008 [Streptococcus pneumoniae SP-BS293] gi|303262293|ref|ZP_07348237.1| hypothetical protein CGSSp14BS292_01338 [Streptococcus pneumoniae SP14-BS292] gi|303264715|ref|ZP_07350633.1| hypothetical protein CGSSpBS397_06729 [Streptococcus pneumoniae BS397] gi|303267322|ref|ZP_07353182.1| hypothetical protein CGSSpBS457_11366 [Streptococcus pneumoniae BS457] gi|303269127|ref|ZP_07354906.1| hypothetical protein CGSSpBS458_03184 [Streptococcus pneumoniae BS458] gi|29428248|sp|Q97R63|RRMF_STRPN RecName: Full=Probable rRNA maturation factor gi|238691155|sp|B2IPC1|RRMF_STRPS RecName: Full=Probable rRNA maturation factor gi|14972442|gb|AAK75088.1| conserved hypothetical protein TIGR00043 [Streptococcus pneumoniae TIGR4] gi|147764868|gb|EDK71797.1| hypothetical protein CGSSp19BS75_03512 [Streptococcus pneumoniae SP19-BS75] gi|182629247|gb|ACB90195.1| hypothetical protein SPCG_0943 [Streptococcus pneumoniae CGSP14] gi|301801810|emb|CBW34521.1| conserved hypothetical protein [Streptococcus pneumoniae INV200] gi|302636616|gb|EFL67107.1| hypothetical protein CGSSp14BS292_01338 [Streptococcus pneumoniae SP14-BS292] gi|302639084|gb|EFL69544.1| hypothetical protein CGSSpBS293_10008 [Streptococcus pneumoniae SP-BS293] gi|302641314|gb|EFL71682.1| hypothetical protein CGSSpBS458_03184 [Streptococcus pneumoniae BS458] gi|302643132|gb|EFL73419.1| hypothetical protein CGSSpBS457_11366 [Streptococcus pneumoniae BS457] gi|302645802|gb|EFL76031.1| hypothetical protein CGSSpBS397_06729 [Streptococcus pneumoniae BS397] Length = 165 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRNTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELEIAFDEEDLLENSELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|315223062|ref|ZP_07864941.1| conserved hypothetical protein TIGR00043 [Streptococcus anginosus F0211] gi|319939222|ref|ZP_08013585.1| metal-dependent hydrolase [Streptococcus anginosus 1_2_62CV] gi|315188012|gb|EFU21748.1| conserved hypothetical protein TIGR00043 [Streptococcus anginosus F0211] gi|319811618|gb|EFW07894.1| metal-dependent hydrolase [Streptococcus anginosus 1_2_62CV] Length = 165 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 26/172 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E +EI +T + FA + + E+++ F + R L Sbjct: 1 MYIEMVDETGQVSEEIIKQTHDILEFAAK---------KIGKEEKEMAVTFVTNERSHEL 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLML-----------------GDIVLAYEIIEI 113 N EYR D+PT+V+S L G++ ++ + Sbjct: 52 NLEYRNTDRPTDVISLEYKPELDIAIDEEDLLENPELAEMLEDFDAYIGELFISIDKARE 111 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +A G FE + L +HGFLH+ GYDH ++ M GL+ IL G+ Sbjct: 112 QAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|71065192|ref|YP_263919.1| hypothetical protein Psyc_0626 [Psychrobacter arcticus 273-4] gi|123649317|sp|Q4FU23|RRMF_PSYA2 RecName: Full=Probable rRNA maturation factor gi|71038177|gb|AAZ18485.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 206 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAY 108 +E I L + TD LN E R D TN+LS+P+ ++ +L LG++V+ + Sbjct: 85 QEKIKALDIYITDEDEGRELNLEARQKDYATNILSYPSDLPAAIIGLMPTLPLGELVICH 144 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDP 167 ++ EA K H+ HL++HG LHLLG+DH + ME E IL L I +P Sbjct: 145 AVMVREAAEQNKAAVQHINHLLVHGILHLLGFDHELGQAEQDEMERFEIEILAGLNIPNP 204 Query: 168 Y 168 Y Sbjct: 205 Y 205 >gi|56417248|ref|YP_154322.1| hypothetical protein AM1264 [Anaplasma marginale str. St. Maries] gi|222475612|ref|YP_002564029.1| hypothetical protein AMF_953 [Anaplasma marginale str. Florida] gi|255003605|ref|ZP_05278569.1| hypothetical protein AmarPR_05268 [Anaplasma marginale str. Puerto Rico] gi|255004734|ref|ZP_05279535.1| hypothetical protein AmarV_05648 [Anaplasma marginale str. Virginia] gi|62901414|sp|Q5P9G3|RRMF_ANAMM RecName: Full=Probable rRNA maturation factor gi|254807282|sp|B9KH69|RRMF_ANAMF RecName: Full=Probable rRNA maturation factor gi|56388480|gb|AAV87067.1| hypothetical protein AM1264 [Anaplasma marginale str. St. Maries] gi|222419750|gb|ACM49773.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 154 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 4/110 (3%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 +V + + LN +YRGI K TNVLSF S C LG+I L+ E I E+ + Sbjct: 44 VVLANDALLLELNSQYRGIHKATNVLSFSYEKLSPGCC----LGEIYLSMERIAEESLEM 99 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H H++IHG LH+LGYDH + ++A M+ LE +L LGI +PY Sbjct: 100 DVAVRSHFFHMLIHGMLHILGYDHEEPEEAITMQALEVGLLAKLGIRNPY 149 >gi|116327964|ref|YP_797684.1| metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330845|ref|YP_800563.1| metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281401|sp|Q04TG5|RRMF_LEPBJ RecName: Full=Probable rRNA maturation factor gi|122284244|sp|Q052J4|RRMF_LEPBL RecName: Full=Probable rRNA maturation factor gi|116120708|gb|ABJ78751.1| Metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124534|gb|ABJ75805.1| Metal-dependent hydrolase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 143 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 15/128 (11%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD--------------G 95 +K+ EL L+ + +N RG DK T+VLSFP F S+ Sbjct: 13 LKDFPCELGLLLVGDSDMRKINRLRRGKDKTTDVLSFPLEFDSAPLQNVLQKRTGFDSNS 72 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGL 154 + LG+IV++ + +E +A +G ++ L++HGFLHLLGYDH +++ +M+ Sbjct: 73 LPPIALGEIVISVDTLEKQAVEIGHSVKDEFYRLLVHGFLHLLGYDHERGEEEERIMKLK 132 Query: 155 ERSILEDL 162 E LE L Sbjct: 133 EDECLEIL 140 >gi|78778570|ref|YP_396682.1| hypothetical protein PMT9312_0184 [Prochlorococcus marinus str. MIT 9312] gi|123554741|sp|Q31CZ9|RRMF_PROM9 RecName: Full=Probable rRNA maturation factor gi|78712069|gb|ABB49246.1| Protein of unknown function UPF0054 [Prochlorococcus marinus str. MIT 9312] Length = 179 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 7/140 (5%) Query: 31 LCEVVFAKAVSNLISKG------YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E VF ++ ++ K Y ++ L L + I +LN ++ + PT+VL Sbjct: 40 FWEKVFLSWINTILKKEDYELPYYIFEKKSFSLGLQIISNQEIASLNKKWMQKNGPTDVL 99 Query: 85 SFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 SFP S + + LGDI ++ E+ ++ ++ L HGFLHLLG++H Sbjct: 100 SFPIISDESLNNLDQIELGDIFISLEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHN 159 Query: 144 DDKDACVMEGLERSILEDLG 163 ++ D M + ++ L Sbjct: 160 NEHDLENMLNFQEYLITRLN 179 >gi|257466092|ref|ZP_05630403.1| metal-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917249|ref|ZP_07913489.1| metal-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691124|gb|EFS27959.1| metal-binding protein [Fusobacterium gonidiaformans ATCC 25563] Length = 164 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 4/160 (2%) Query: 10 RLDLQIAVENALWGDEIHLRTLCE---VVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 L ++++VE ++ + E V + + +++ + +SL+ T + + Sbjct: 2 ELLVEVSVEYKKNDYAEFIQEITENNNEVLTEYIEEVLTMEKIESTLPLYVSLLLTGNEQ 61 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENH 125 I+ +N E+R D PT+V+SF LGDIV++ + + +A F Sbjct: 62 IQGINREFRKKDSPTDVISFAYHENEDFLVGPYDTLGDIVISLDRVGEQAKEYNHSFTRE 121 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +++ HG LH+LGYDH++++D M E IL G Sbjct: 122 FYYVLTHGILHILGYDHIEEEDKKEMREREEEILGHFGYT 161 >gi|312863688|ref|ZP_07723926.1| translation metalloprotein YbeY [Streptococcus vestibularis F0396] gi|322517153|ref|ZP_08070037.1| metalloprotease [Streptococcus vestibularis ATCC 49124] gi|311101224|gb|EFQ59429.1| translation metalloprotein YbeY [Streptococcus vestibularis F0396] gi|322124303|gb|EFX95814.1| metalloprotease [Streptococcus vestibularis ATCC 49124] Length = 145 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 17/137 (12%) Query: 46 KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AFASSDGCSSL 99 + + E+++ F + R LN EYR D+PT+V+S F D + Sbjct: 7 AAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELDITFDEEDLAENP 66 Query: 100 ML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 L G++ ++ + +A G +E + L +HGFLH+ GYDH ++ Sbjct: 67 ELAEMMGEFDSYIGELFISIDKAREQAEEYGHSYEREMGFLAVHGFLHINGYDHYTPEEE 126 Query: 149 CVMEGLERSILEDLGIN 165 M GL+ IL G+ Sbjct: 127 AEMFGLQEEILTAYGLT 143 >gi|257458354|ref|ZP_05623502.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] gi|257444289|gb|EEV19384.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] Length = 153 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 53/116 (45%), Gaps = 2/116 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT--AFASSDGCSSLMLGDIVLAYEIIEI 113 +LS+VF I LN YR ID PT+VLSF + DG GDIV++ + + Sbjct: 37 DLSVVFCKDAFIHELNKTYRHIDSPTDVLSFEQGDEYDDEDGNLRFNAGDIVISLDSLRS 96 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 A L L+IHG LHL G DH D+ M L+ IL Y+ Sbjct: 97 NAETFNVTMNEELKRLLIHGILHLSGMDHSDNDPQQEMLQLQEKILGSYSGTVIYQ 152 >gi|320538438|ref|ZP_08038305.1| conserved hypothetical protein TIGR00043 [Treponema phagedenis F0421] gi|320144700|gb|EFW36449.1| conserved hypothetical protein TIGR00043 [Treponema phagedenis F0421] Length = 156 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 2/130 (1%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA-- 91 + K S L+ ++ +LS+VF + I TLN YR ID PT+VLSF Sbjct: 19 LWLPKVESFLLKVLERMEIQNWDLSVVFCNDEFIHTLNKTYRHIDSPTDVLSFENGEKYF 78 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + DG + ++ GDI+++ + ++ A + L L+IHG LHL G DH D+ M Sbjct: 79 NEDGEARILAGDIIISLDSVKANAYAFHVSIDEELRRLLIHGVLHLFGMDHTDNSPEQEM 138 Query: 152 EGLERSILED 161 L+ IL + Sbjct: 139 LQLQEKILAE 148 >gi|229820243|ref|YP_002881769.1| protein of unknown function UPF0054 [Beutenbergia cavernae DSM 12333] gi|259646478|sp|C5C494|RRMF_BEUC1 RecName: Full=Probable rRNA maturation factor gi|229566156|gb|ACQ80007.1| protein of unknown function UPF0054 [Beutenbergia cavernae DSM 12333] Length = 150 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + DE L V + ELS++F D + L Sbjct: 1 MSTEVSNESPVTVDEAEFAALARYVLDQ----------LHVHPQAELSILFVDIPAMSDL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + + PT+VLSFP +LGD+VL E+ +A G E L Sbjct: 51 HERWMDEPGPTDVLSFPMDELRPGRDDAPSGPGVLGDVVLCPEVAAEQARTAGHSTEEEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLG+DH + + M L+R +L Sbjct: 111 LLLTTHGILHLLGFDHAEPDEEREMFDLQRKLL 143 >gi|320160837|ref|YP_004174061.1| hypothetical protein ANT_14330 [Anaerolinea thermophila UNI-1] gi|319994690|dbj|BAJ63461.1| hypothetical protein ANT_14330 [Anaerolinea thermophila UNI-1] Length = 150 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 4/143 (2%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + DE + + + +A + + ++++ + +++LN ++ G + P Sbjct: 4 FFVDEAYEALVRKEPLIRAAEETLRVEN---HSDSDVTISIQNDEALKSLNAQFMGTEAP 60 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T+VLSF F + LGDI+++YE E +A G EN L+ LI+HG LHL+GY Sbjct: 61 TDVLSFTMDFFDPE-TERQYLGDILISYERAEEQAQTAGHSTENELILLIVHGILHLVGY 119 Query: 141 DHVDDKDACVMEGLERSILEDLG 163 DH +++ M + IL+ LG Sbjct: 120 DHGTEEEKSKMWKTQSEILKQLG 142 >gi|331703461|ref|YP_004400148.1| hypothetical protein MLC_4420 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384128|gb|ACU78698.1| putative metalloprotease [Mycoplasma mycoides subsp. capri str. GM12] gi|256384960|gb|ACU79529.1| putative metalloprotease [Mycoplasma mycoides subsp. capri str. GM12] gi|296456005|gb|ADH22240.1| putative metalloprotease [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802016|emb|CBW54170.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 164 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Query: 36 FAKAVSNLISK---GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 F K N I K YF +ELS+ F + + + +N +YR +V SFP Sbjct: 16 FWKKFCNKILKTAYNYFNFNYDIELSITFVNDLKAQQINQQYRNHSYIADVTSFPVEMTE 75 Query: 93 SD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 ++ LGD+ + + +A + + + L +HGFLHLLGYDH D D + Sbjct: 76 NEIKAIGFRELGDMFINLSEAKRKAIKYNHDLNSEMGFLFVHGFLHLLGYDHEDLNDEKI 135 Query: 151 MEGLERSILE 160 M L+ IL+ Sbjct: 136 MFDLQDQILK 145 >gi|148992898|ref|ZP_01822517.1| hypothetical protein CGSSp9BS68_07482 [Streptococcus pneumoniae SP9-BS68] gi|149019558|ref|ZP_01834877.1| hypothetical protein CGSSp23BS72_03128 [Streptococcus pneumoniae SP23-BS72] gi|168490214|ref|ZP_02714413.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|147928350|gb|EDK79366.1| hypothetical protein CGSSp9BS68_07482 [Streptococcus pneumoniae SP9-BS68] gi|147930933|gb|EDK81913.1| hypothetical protein CGSSp23BS72_03128 [Streptococcus pneumoniae SP23-BS72] gi|183571419|gb|EDT91947.1| conserved hypothetical protein [Streptococcus pneumoniae SP195] gi|332073300|gb|EGI83779.1| uncharacterized UPF0054 family protein [Streptococcus pneumoniae GA17570] Length = 165 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRNTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELEIAFDEEDLLENSELAEMMSEFDAYIGELFISSDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|291166726|gb|EFE28772.1| metalloprotease [Filifactor alocis ATCC 35896] Length = 162 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 11/141 (7%) Query: 35 VFAKAVSNLISKGYFVKE--NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT---- 88 VF K +S++I + E+SL + +I LN +R ID+ T+VLSFP Sbjct: 18 VFQKTLSDIIEYAMETEHLTGDYEVSLSVVSADQIRELNANFRQIDRITDVLSFPMYERE 77 Query: 89 -----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 + +GDIVL Y+ +A G + + +L+ H HLLGYDH+ Sbjct: 78 ELDEIEEKKEYEDYEVNIGDIVLCYDRAVEQAKEYGHSLKREICYLVTHSIFHLLGYDHM 137 Query: 144 DDKDACVMEGLERSILEDLGI 164 ++++ +M E +L I Sbjct: 138 EEEEKQMMRTREEQVLSHFHI 158 >gi|294155405|ref|YP_003559789.1| conserved hypothetical metalloprotease [Mycoplasma crocodyli MP145] gi|291600021|gb|ADE19517.1| conserved hypothetical metalloprotease [Mycoplasma crocodyli MP145] Length = 158 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + + + + NL+ +F + +++ + F D+ +I+ LN YR D T++LSF Sbjct: 23 KKEYQEILKNLV--KHFNIKKDIQVDVTFVDNKKIKELNKSYRNKDYVTDILSFDFGKID 80 Query: 93 SDG-CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + + LG++V++ + +E ++ + +L HG +HL+GYDH + + M Sbjct: 81 FNSKIPFIHLGELVISSQKVEEQSQEFNHSLKREYCYLFAHGLIHLMGYDHELEDERIEM 140 Query: 152 EGLERSILEDLGIN 165 L +I L I Sbjct: 141 NKLVDTIFSPLNIT 154 >gi|308535206|ref|YP_002137815.2| hypothetical protein Gbem_0998 [Geobacter bemidjiensis Bem] gi|308052551|gb|ACH38019.2| protein of unknown function UPF0054 [Geobacter bemidjiensis Bem] Length = 155 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 5/131 (3%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 K ++ + ELS+ I +N +Y G DK TNV+SF Sbjct: 22 TALRKVAQRILDA---LGCPEAELSISIVGDRAIRVINRDYLGRDKATNVISFAMQEGEF 78 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV--DDKDACVM 151 + +LGD+V++ + EA G+ F + L L++HG LH+ GYDH + +A M Sbjct: 79 GAVNPELLGDVVISVDTAAREAEEAGETFLSRLYFLLMHGILHITGYDHERSGEAEAARM 138 Query: 152 EGLERSILEDL 162 E ER I L Sbjct: 139 EAKEREIFALL 149 >gi|297571542|ref|YP_003697316.1| hypothetical protein Arch_0975 [Arcanobacterium haemolyticum DSM 20595] gi|296931889|gb|ADH92697.1| protein of unknown function UPF0054 [Arcanobacterium haemolyticum DSM 20595] Length = 170 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 DE ++ ++ + V + +LS+V D + L+ E+ ++ PT+ Sbjct: 5 NDESGFEPAPQLEEISELATWVLDDLRVHQQS-DLSIVMLDEEAMSALHVEWMDLEGPTD 63 Query: 83 VLSFPTAFASSDGCS----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 V+SFP MLGDI + ++ +A G ++ L HG LHLL Sbjct: 64 VMSFPMDELRPTPLGVEPTPGMLGDIAICPQVAARQALAAGHNTMEEILLLTTHGILHLL 123 Query: 139 GYDHVDDKDACVMEGLERSIL 159 GYDH + + M L+R +L Sbjct: 124 GYDHAEPDEKKEMFELQRRLL 144 >gi|257452112|ref|ZP_05617411.1| metal-binding protein [Fusobacterium sp. 3_1_5R] gi|317058658|ref|ZP_07923143.1| metal-binding protein [Fusobacterium sp. 3_1_5R] gi|313684334|gb|EFS21169.1| metal-binding protein [Fusobacterium sp. 3_1_5R] Length = 164 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 4/160 (2%) Query: 10 RLDLQIAVENALWGDEIHLRTLCE---VVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 L ++++VE ++ + E V + + +++ + +SL+ T + + Sbjct: 2 ELLVEVSVEYEKNDYAEFIQEITENNNEVLTEYIEEVLTMEKIESTLPLYVSLLLTGNEQ 61 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENH 125 I+ +N E+R D PT+V+SF LGDIV++ + + +A F Sbjct: 62 IQGINREFRKKDSPTDVISFAYHENEDFLVGPYDTLGDIVISLDRVGEQAKEYNHSFTRE 121 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +++ HG LH+LGYDH++++D M E IL G Sbjct: 122 FYYVLTHGILHILGYDHIEEEDKKEMREREEEILGHFGYT 161 >gi|194397080|ref|YP_002037602.1| putative metalloprotease [Streptococcus pneumoniae G54] gi|226702103|sp|B5E486|RRMF_STRP4 RecName: Full=Probable rRNA maturation factor gi|194356747|gb|ACF55195.1| conserved hypothetical protein [Streptococcus pneumoniae G54] Length = 165 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 QVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAXMFGLQEEILTAYGLT 163 >gi|254995418|ref|ZP_05277608.1| hypothetical protein AmarM_05793 [Anaplasma marginale str. Mississippi] Length = 154 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 4/110 (3%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 +V + + LN +YRGI K TNVLSF S C LG+I L+ E I E+ + Sbjct: 44 VVLANDALLLELNSQYRGIHKATNVLSFSYEKLSPGCC----LGEIYLSMERIAEESLEM 99 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H H++IHG LH+LGYDH + +DA M+ LE +L LGI +PY Sbjct: 100 DVAVRSHFFHMLIHGMLHILGYDHEEPEDAITMQALEVGLLAKLGIRNPY 149 >gi|329891158|ref|ZP_08269501.1| uncharacterized protein family UPF0054 family protein [Brevundimonas diminuta ATCC 11568] gi|328846459|gb|EGF96023.1| uncharacterized protein family UPF0054 family protein [Brevundimonas diminuta ATCC 11568] Length = 156 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 5/147 (3%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI E + A + + ++ ++ D ++ LN +R D+PTNVL Sbjct: 5 EIDSEGWTEALPEAAAVAERAAVAALGTIEGDVVVLLADDAAVQDLNKRFRDKDRPTNVL 64 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP A ++ LGD+VL Y EA GK +HL HL++HG LHLLG DH D Sbjct: 65 SFPAAESAF-----PHLGDVVLGYAYCAAEAETQGKTLSDHLSHLVVHGVLHLLGRDHED 119 Query: 145 DKDACVMEGLERSILEDLGINDPYEVD 171 D +A ME ER IL +LG+ DPY + Sbjct: 120 DAEAEEMEAEEREILAELGVADPYAAE 146 >gi|328950644|ref|YP_004367979.1| metalloprotease ybeY [Marinithermus hydrothermalis DSM 14884] gi|328450968|gb|AEB11869.1| metalloprotease ybeY [Marinithermus hydrothermalis DSM 14884] Length = 141 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 LR L AK + L + ++++ RI L Y G D PT+VLSF Sbjct: 15 GLRPLLRAKLAKLMEELGYAQHA-------VTVILCSDRRIRELKRRYWGEDAPTDVLSF 67 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 PT F D LGDI ++ + + +A G E+ ++ L H HLLG+DH ++ Sbjct: 68 PT-FEPGDPFIPPHLGDIWISLDTAQRQAREAGHTLEDEVLVLAAHALWHLLGHDHASEE 126 Query: 147 DACVMEGLERSIL 159 ++ IL Sbjct: 127 AWQGFRRVQERIL 139 >gi|30682927|ref|NP_850072.1| haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] gi|20466676|gb|AAM20655.1| unknown protein [Arabidopsis thaliana] gi|26452541|dbj|BAC43355.1| unknown protein [Arabidopsis thaliana] gi|133778884|gb|ABO38782.1| At2g25870 [Arabidopsis thaliana] gi|330252671|gb|AEC07765.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] Length = 584 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 18/150 (12%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEV-------VFAKAVSNLISKGYFVKE---------N 53 L + I +E L D++ ++ + E+ A + L Y +E Sbjct: 104 ELSVSICIEEQL-PDDLEIQNIAEMLRLNVPMAMTLAFNGLKDSKYKTRETDIEDLGGYE 162 Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 VELS++ + I LN E+RG D T+VLS LM+GD+V++ E Sbjct: 163 TVELSVMLCNDDFICKLNKEWRGEDHATDVLSMSQHVPEL-KLPVLMMGDLVISVETAAR 221 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +A G + + L+IHG LHLLG+DH Sbjct: 222 QAAERGHTLLDEIRILVIHGLLHLLGFDHE 251 >gi|296273646|ref|YP_003656277.1| hypothetical protein Arnit_2116 [Arcobacter nitrofigilis DSM 7299] gi|296097820|gb|ADG93770.1| protein of unknown function UPF0054 [Arcobacter nitrofigilis DSM 7299] Length = 139 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+ + I+TLN E+R IDK T+VLSFP + ++ LG IV++ + +E +A Sbjct: 28 DIELILVYNDEIQTLNKEHRNIDKATDVLSFPLEYD----MPNMPLGSIVISVDFVEDKA 83 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 F + L L IHG LHLLGYDH + D E +++ + + Sbjct: 84 KEYNHSFLDELTLLFIHGMLHLLGYDH--EVDKGEHRKKEEELIKKYNLPN 132 >gi|313672928|ref|YP_004051039.1| hypothetical protein Calni_0965 [Calditerrivibrio nitroreducens DSM 19672] gi|312939684|gb|ADR18876.1| protein of unknown function UPF0054 [Calditerrivibrio nitroreducens DSM 19672] Length = 149 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 3/111 (2%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 N E+SLV TD ++ +N YR ID T+VLSFP S +LGDIV++Y+ + Sbjct: 38 NTAEISLVITDDEEMKEINRLYRKIDSTTDVLSFPIN--DGKDIKSNILGDIVISYDKAK 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLERSILEDL 162 ++ E + L IHG LHLLGYDH + D M ++ + Sbjct: 96 SQSVENECTIEEEIAFLFIHGLLHLLGYDHDSSEVDEKEMFEMQEDFFQKF 146 >gi|289523170|ref|ZP_06440024.1| putative metalloprotease [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503713|gb|EFD24877.1| putative metalloprotease [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 166 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 6/128 (4%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS----- 92 K +S + +E+SL R++ LN +RGID+PT+VLSFP Sbjct: 31 KIISQELRTSRLDPHVSIEISLTLLGPERMQELNKRHRGIDEPTDVLSFPLWEEEGTFCM 90 Query: 93 -SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + + LGDIV+ ++ A VLGK E L + +HG LHLLGYDH ++ +M Sbjct: 91 PEEIAGEVSLGDIVICPYVVAENARVLGKNPEEELKLIYVHGLLHLLGYDHATLEEEAIM 150 Query: 152 EGLERSIL 159 + L Sbjct: 151 WKKQEEYL 158 >gi|148377382|ref|YP_001256258.1| hypothetical protein MAG_1150 [Mycoplasma agalactiae PG2] gi|148291428|emb|CAL58813.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2] Length = 152 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + + + +SNL + +++ + + + ++ +I+ LN EYR D T++LSF S Sbjct: 17 KAEYEQILSNL-QTYFKLEDKEISVDVSIVNNRKIKKLNKEYRQKDYATDILSFDFGDKS 75 Query: 93 S-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 L LG++V+++E +E +A G +L HG +HL+GYDH + + M Sbjct: 76 LYKSMPFLPLGELVISHEKVEEQAKEFGHSLRREYCYLYAHGLIHLMGYDHEVENERIEM 135 Query: 152 EGLERSILEDLGIN 165 + +I L I Sbjct: 136 NKIVDAIFNPLNIT 149 >gi|297708196|ref|XP_002830862.1| PREDICTED: putative metalloprotease C21orf57-like isoform 1 [Pongo abelii] gi|297708198|ref|XP_002830863.1| PREDICTED: putative metalloprotease C21orf57-like isoform 2 [Pongo abelii] Length = 167 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 93 LGVEYIFHQCQE-NEDYNDVLTVTATHGLCHLLGFTHSTEAEWQQMFQKEKAVLDELG 149 >gi|312864823|ref|ZP_07725054.1| translation metalloprotein YbeY [Streptococcus downei F0415] gi|311099950|gb|EFQ58163.1| translation metalloprotein YbeY [Streptococcus downei F0415] Length = 165 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 17/154 (11%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS--- 85 + + + + K L + + E+++ F D+ +I +N +YR +D+PT+V+S Sbjct: 10 KQVSQEMMDKIKDMLNFAAKKLGKENKEMAITFVDNEKIHQINLDYRDMDRPTDVVSLEY 69 Query: 86 -------FPTAFASSDGCS-------SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 F +D +G++ ++ + +A G FE + L + Sbjct: 70 KPETDIVFSEEDLETDPDLAAVMEDYDAYIGELFISVDKAHEQAESYGHSFEREMGFLAV 129 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 130 HGFLHINGYDHYTPEEEKEMFTLQEEILTAYGLT 163 >gi|260903864|ref|ZP_05912186.1| hypothetical protein BlinB_00925 [Brevibacterium linens BL2] Length = 162 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 13/152 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 ++ +I+ E D + L E + EL++ D+ + L Sbjct: 1 MNTEISNETDESIDLDEVVALTEYLGQA----------LHMHPGAELAVTMVDATAMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + + ++ PT+V+SFP + +GDI++ E+ +A+ G + ++ Sbjct: 51 HVTWMDLEGPTDVMSFPMDQLTQGQPGAPTEGQMGDIIICPEVAAAQASSSGHTTMDEVL 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L +HGFLHLLGYDH + + M L+R +L Sbjct: 111 LLTVHGFLHLLGYDHGEPAEKEEMFTLQRHLL 142 >gi|322391810|ref|ZP_08065275.1| metalloprotease [Streptococcus peroris ATCC 700780] gi|321145290|gb|EFX40686.1| metalloprotease [Streptococcus peroris ATCC 700780] Length = 165 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 T+ + + + L + + E+++ F + R LN EYR D+PT+V+S Sbjct: 11 TVSQEILQQTQDLLEFAAKKIGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 F + + L G++ ++ + +A G FE + L +H Sbjct: 71 PELDITFEDEELAENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLSVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M L+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFSLQEEILTAYGLT 163 >gi|301794105|emb|CBW36511.1| conserved hypothetical protein [Streptococcus pneumoniae INV104] gi|332204970|gb|EGJ19035.1| hypothetical protein SPAR120_0938 [Streptococcus pneumoniae GA47901] Length = 165 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT- 88 + + + + L + + E+++ F + R LN YR D+PT+V+S Sbjct: 11 QVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLGYRDTDRPTDVISLEYK 70 Query: 89 -----AFASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 AF D + L G++ ++ + +A G FE + L +H Sbjct: 71 PELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|168702468|ref|ZP_02734745.1| hypothetical protein GobsU_23272 [Gemmata obscuriglobus UQM 2246] Length = 146 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 6/134 (4%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E K + + +G VK ++L F D+ I LN ++ ++PT+VL+FP Sbjct: 15 EFQQLKDAARAVLEGEGVKAGK--VTLAFVDNPHIHRLNKQFLNHNEPTDVLTFPY---- 68 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +D + + G++V+ YE+ + A F L+ ++HG LHL GYD DD M Sbjct: 69 TDPGAKSLEGEVVIGYEVAKEYAADRNHAFNLELLLYVVHGCLHLTGYDDTDDDSEREMR 128 Query: 153 GLERSILEDLGIND 166 ER L LG+ D Sbjct: 129 AKEREYLTKLGLPD 142 >gi|54607072|ref|NP_478061.1| rRNA maturation factor homolog isoform 1 [Homo sapiens] gi|47117865|sp|P58557|YBEY_HUMAN RecName: Full=rRNA maturation factor homolog gi|119629693|gb|EAX09288.1| chromosome 21 open reading frame 57, isoform CRA_a [Homo sapiens] gi|119629696|gb|EAX09291.1| chromosome 21 open reading frame 57, isoform CRA_a [Homo sapiens] Length = 167 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 93 LGVEYIFHQCKE-NEDYNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 149 >gi|152981675|ref|YP_001352119.1| hypothetical protein mma_0429 [Janthinobacterium sp. Marseille] gi|172049086|sp|A6SV22|RRMF_JANMA RecName: Full=Probable rRNA maturation factor gi|151281752|gb|ABR90162.1| Hypothetical protein mma_0429 [Janthinobacterium sp. Marseille] Length = 152 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 10/148 (6%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + D+ + V + +++L F D+ + LN YRG D Sbjct: 12 QYPDKRLQDIITRPKLRSWVKAALLA-------PAQITLRFVDAAEGKDLNRNYRGKDYA 64 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 TNVL+F + DI+L +++++EA K E H HL++HG LH GY Sbjct: 65 TNVLTFAYTEDEDSETTQA---DIILCTDVLQLEAAEQEKSVEEHAAHLVVHGVLHAQGY 121 Query: 141 DHVDDKDACVMEGLERSILEDLGINDPY 168 DH D++A ME LE IL DLG +PY Sbjct: 122 DHESDEEAEEMEALEIEILADLGFRNPY 149 >gi|148263839|ref|YP_001230545.1| hypothetical protein Gura_1782 [Geobacter uraniireducens Rf4] gi|146397339|gb|ABQ25972.1| protein of unknown function UPF0054 [Geobacter uraniireducens Rf4] Length = 129 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELSL I LN +Y DKPTNV+SF + +LGD++++ + EA Sbjct: 15 ELSLTIVGDRSIRRLNRDYLERDKPTNVISFAMQEGLFGELNPEVLGDVIISADTAAREA 74 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHV--DDKDACVMEGLERSILEDL 162 G F L L++HG LH+ GYDH + +A ME R I L Sbjct: 75 EEGGMPFFARLSFLLLHGILHITGYDHERSGESEARRMEAKAREIFGLL 123 >gi|309800250|ref|ZP_07694426.1| conserved hypothetical protein [Streptococcus infantis SK1302] gi|308116103|gb|EFO53603.1| conserved hypothetical protein [Streptococcus infantis SK1302] Length = 165 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS---- 85 + + + + L + + E+++ F + R LN E+R D+PT+V+S Sbjct: 11 QVSKEILEQTQEILEFAAKKIGKEDKEMAVTFVTNERSHELNLEFRDTDRPTDVISLEYK 70 Query: 86 ------FPTAFASSDGCSSLM-------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 F +D + M +G++ ++ + +A G FE + L +H Sbjct: 71 PELEIAFDEEDLENDPDLADMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|309811100|ref|ZP_07704898.1| translation metalloprotein YbeY [Dermacoccus sp. Ellin185] gi|308435064|gb|EFP58898.1| translation metalloprotein YbeY [Dermacoccus sp. Ellin185] Length = 168 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + IA E + + + + VELS+ D +ETL Sbjct: 1 MTIDIANETDVDVELDEIHDCARYAMDAMFVH----------PNVELSIRIIDEAAMETL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP + + MLGDIVL + +A G + L Sbjct: 51 HVQWMDLPGPTDVMSFPMDELTPGSEREPSQEGMLGDIVLCPSVAAAQAAAAGHDTMEEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L +HG LHLLGYDH + + M L+R+IL Sbjct: 111 LLLTVHGVLHLLGYDHAEPDERVEMFELQRTIL 143 >gi|261414960|ref|YP_003248643.1| protein of unknown function UPF0054 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371416|gb|ACX74161.1| protein of unknown function UPF0054 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 161 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 9/146 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E ++ + +A++ + + N +++V + +N YRG+DK T+VL Sbjct: 18 EGNIESFPWKDKFEAMARKLLAEEGTENN---VNIVLCTDEFVREMNKNYRGLDKVTDVL 74 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + MLG+I +A + ++ +A G F + +I+HG LHL GYDH+ Sbjct: 75 SF--EWHEEIPGEEEMLGEIYIARDQVKRQAPQYGNSFFAEMKRVIVHGLLHLSGYDHIK 132 Query: 145 DKDACVMEGLERSILEDLGINDPYEV 170 D VM E E LG+ DPY+ Sbjct: 133 AADRKVMRARE---CEFLGL-DPYKD 154 >gi|47086839|ref|NP_997759.1| rRNA maturation factor homolog [Danio rerio] gi|326681334|ref|XP_003201790.1| PREDICTED: rRNA maturation factor homolog [Danio rerio] gi|45709063|gb|AAH67584.1| Zgc:85702 [Danio rerio] Length = 163 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC-------SSLMLGDIV 105 ++ ++ D+ +I+ +N YR ++PT+VLSFP G LGDI Sbjct: 33 QKFDMGIICVDNRKIQRINHTYRRRNQPTDVLSFPFYEDLRPGKVPCALQRDEYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E + + ++ L + HG HLLGY H +++ M+ E IL + Sbjct: 93 LGVEYVMQQCKETKQDLHQTLTVVTAHGICHLLGYRHETEEEWNEMQQKESYILSEFN 150 >gi|332872338|ref|XP_001145583.2| PREDICTED: rRNA maturation factor homolog isoform 1 [Pan troglodytes] gi|332872340|ref|XP_003319177.1| PREDICTED: rRNA maturation factor homolog isoform 2 [Pan troglodytes] Length = 167 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRVYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 93 LGVEYIFHQCKE-NEDYNDILTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 149 >gi|308235188|ref|ZP_07665925.1| putative metalloprotease [Gardnerella vaginalis ATCC 14018] gi|311114843|ref|YP_003986064.1| putative metalloprotease [Gardnerella vaginalis ATCC 14019] gi|310946337|gb|ADP39041.1| probable metalloprotease [Gardnerella vaginalis ATCC 14019] Length = 175 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIE 112 +LS+ F D I +L+ ++ ++ PT+V+SFP S D S MLGD+V+ + Sbjct: 36 DLSITFVDPEPIASLHEKWMDLEGPTDVMSFPMDELTPGSDDKVSEGMLGDLVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH ++ M GL+R +L Sbjct: 96 QQAAAAGHSTMEEMLLLTIHGMLHLLGYDHTTPQEEKQMFGLQRQLL 142 >gi|313665395|ref|YP_004047266.1| metalloprotein, YbeY family [Mycoplasma leachii PG50] gi|312950006|gb|ADR24602.1| metalloprotein, YbeY family [Mycoplasma leachii PG50] Length = 164 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 5/130 (3%) Query: 36 FAKAVSNLISK---GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 F K +N I K YF +ELS+ F D + + +N +YR +V SF Sbjct: 16 FWKKFANKILKTAYEYFNFNYDIELSITFVDDLKAQQINQKYRNHSYIADVTSFSVEMTD 75 Query: 93 SD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + LGD+ + + +A + + + L +HGFLHLLGYDH D D + Sbjct: 76 QEIKAIGFRELGDMFINLSEAKRKAIKYEHDLNSEMGFLFVHGFLHLLGYDHEDLDDEKI 135 Query: 151 MEGLERSILE 160 M L+ IL+ Sbjct: 136 MFDLQDQILK 145 >gi|47459183|ref|YP_016045.1| putative metal binding protein [Mycoplasma mobile 163K] gi|59799113|sp|Q6KHU4|RRMF_MYCMO RecName: Full=Probable rRNA maturation factor gi|47458512|gb|AAT27834.1| putative metal binding protein [Mycoplasma mobile 163K] Length = 152 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Query: 29 RTLCEVVFAKAVSNLISK-GYFVKEN-IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +T + K N++ + F KE +EL L D+ I+ ++ +Y DK T+VLSF Sbjct: 10 QTNYRFRYKKDFQNILDEIALFFKEKLPLELDLNIVDNILIKKISKQYYKKDKETDVLSF 69 Query: 87 PTAFAS-SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 P+ A+ + +G+I L YE + ++A + +L HG +HL GYDHV + Sbjct: 70 PSELANMKNALGFFHIGEIFLNYEKVILQAKEYNHSLKREFCYLFTHGIIHLYGYDHVKE 129 Query: 146 KDACVMEGLERSILEDLGIN 165 +A M + SI++ L I Sbjct: 130 NEAKEMNAIVESIMQKLNIK 149 >gi|303239955|ref|ZP_07326477.1| protein of unknown function UPF0054 [Acetivibrio cellulolyticus CD2] gi|302592434|gb|EFL62160.1| protein of unknown function UPF0054 [Acetivibrio cellulolyticus CD2] Length = 162 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 13/142 (9%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 + +AV++ + F + E+S++F D I +N E+R IDKPT+VLSFP Sbjct: 21 LVKRAVNSSLEFEKFSIPS--EISVMFVDDEGIREINREHRSIDKPTDVLSFPIVDMYEG 78 Query: 95 GCSSLMLGD-----------IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +S IV++ E+ +++A G FE L L+ HG HLLGYDH Sbjct: 79 VINSDDGDFDLDEDLLLLGDIVISLEMTKLQAQEYGHSFERELAFLLTHGVFHLLGYDHD 138 Query: 144 DDKDACVMEGLERSILEDLGIN 165 + M + +LE L ++ Sbjct: 139 SPEREEKMISKQYGVLEILNLS 160 >gi|42526751|ref|NP_971849.1| putative metalloprotease [Treponema denticola ATCC 35405] gi|59799128|sp|Q73NB3|RRMF_TREDE RecName: Full=Probable rRNA maturation factor gi|41817066|gb|AAS11760.1| conserved hypothetical protein TIGR00043 [Treponema denticola ATCC 35405] gi|325473810|gb|EGC76998.1| metalloprotease [Treponema denticola F0402] Length = 155 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS--LMLGDIVLAYEIIEI 113 ++SL+F D I+ LN +YR ID PT+VLSF D M GDIV++ + + Sbjct: 39 DISLLFCDDAFIQNLNKQYRDIDSPTDVLSFEQGDEYFDEAGETRFMAGDIVISLDSLSF 98 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A + L LI+HG LHL G DH D+ M + +L Sbjct: 99 NAEEFNVDINEELKRLIVHGILHLNGMDHSDNSPEQEMLKFQEELL 144 >gi|322387706|ref|ZP_08061315.1| metalloprotease [Streptococcus infantis ATCC 700779] gi|321141573|gb|EFX37069.1| metalloprotease [Streptococcus infantis ATCC 700779] Length = 165 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 17/153 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS---- 85 + + + + L + + E+++ F + R LN E+R D+PT+V+S Sbjct: 11 QVSKEILKQTQEILEFAAKKIGKEDKEMAVTFVTNERSHELNLEFRATDRPTDVISLEYK 70 Query: 86 ------FPTAFASSDGCSSLM-------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 F + D + M +G++ ++ + +A G FE + L +H Sbjct: 71 PELEITFDEEDLAEDPDLAEMMSEFDSYIGELFISIDKAHEQAEEYGHSFEREMGFLAVH 130 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 GFLH+ GYDH ++ M GL+ IL G+ Sbjct: 131 GFLHINGYDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|239618150|ref|YP_002941472.1| protein of unknown function UPF0054 [Kosmotoga olearia TBF 19.5.1] gi|239506981|gb|ACR80468.1| protein of unknown function UPF0054 [Kosmotoga olearia TBF 19.5.1] Length = 145 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 12/146 (8%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N E+ L E++ I + + L+++ T + N YR Sbjct: 6 NNATSKEVDTDRLKELIVK------ILESELDELPDSTLNVLLTTDEEMTYYNETYRHKK 59 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 PT+VLSF + GDIV++ E IE +A G F+ L ++IHG LH+L Sbjct: 60 GPTDVLSFEYGLDDPEAV-----GDIVISLETIEKQAKEFGNTFQEELSLMLIHGVLHIL 114 Query: 139 GYDHV-DDKDACVMEGLERSILEDLG 163 GYDH D+++A +M + G Sbjct: 115 GYDHEGDEEEAKIMFEKQEDYFNKYG 140 >gi|291320052|ref|YP_003515310.1| hypothetical protein MAGa1210 [Mycoplasma agalactiae] gi|290752381|emb|CBH40352.1| Conserved hypothetical protein [Mycoplasma agalactiae] Length = 152 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + + + +SNL + +++ + + + ++ +I+ LN EYR D T++LSF S Sbjct: 17 KAEYEQILSNL-QTYFKLEDKEISVDVSIVNNGKIKKLNKEYRQKDYATDILSFDFGDKS 75 Query: 93 S-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 L LG++V+++E +E +A G +L HG +HL+GYDH + + M Sbjct: 76 LYKSMPFLPLGELVISHEKVEEQAKEFGHSLRREYCYLYAHGLIHLMGYDHEVENERIEM 135 Query: 152 EGLERSILEDLGIN 165 + +I + L I Sbjct: 136 NKIVDAIFDPLNIT 149 >gi|289178678|gb|ADC85924.1| Hypothetical metal-binding protein [Bifidobacterium animalis subsp. lactis BB-12] Length = 193 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIE 112 EL++ F D I L+ + + PT+V+SFP MLGDIV+ + + Sbjct: 48 ELTITFVDPEPIAELHERWMDLQGPTDVMSFPMDELRPGDERNEPEGMLGDIVICPWVAQ 107 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 108 QQAQAAGHSTMEEMMLLTIHGVLHLLGYDHHTREQERQMFGLQRQLL 154 >gi|302877838|ref|YP_003846402.1| hypothetical protein Galf_0596 [Gallionella capsiferriformans ES-2] gi|302580627|gb|ADL54638.1| protein of unknown function UPF0054 [Gallionella capsiferriformans ES-2] Length = 153 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 13/138 (9%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 + + + + + V L+L D LN YRG D TNVL+F Sbjct: 27 ARPQWRRWIKAALQR-------DVSLALRIVDEAEGRELNKAYRGRDYATNVLTFVYDED 79 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + GD+V+ ++ EA K+ H HL IH LHL GYDH D +A M Sbjct: 80 DH------LSGDVVICAPVVAREATEQDKDLLTHYAHLAIHAALHLQGYDHEVDAEAEEM 133 Query: 152 EGLERSILEDLGINDPYE 169 E LE +++ LG DPY+ Sbjct: 134 EALETALMLKLGYPDPYK 151 >gi|93005420|ref|YP_579857.1| hypothetical protein Pcryo_0590 [Psychrobacter cryohalolentis K5] gi|122415831|sp|Q1QD80|RRMF_PSYCK RecName: Full=Probable rRNA maturation factor gi|92393098|gb|ABE74373.1| protein of unknown function UPF0054 [Psychrobacter cryohalolentis K5] Length = 155 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAY 108 +E I L + TD LN E R D TN+LS+P+ ++ +L LG++++ + Sbjct: 34 QEKIKVLDIYITDEVEGRELNLEARQKDYATNILSYPSDLPAAIIGLMPTLPLGELIICH 93 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDP 167 ++ EA KE H+ HL+IHG LHLLG+DH + ME E IL L I +P Sbjct: 94 AVMIREAAEQNKEAVQHISHLLIHGVLHLLGFDHELGQAEQDEMERFEIEILAGLNIPNP 153 Query: 168 Y 168 Y Sbjct: 154 Y 154 >gi|123967737|ref|YP_001008595.1| metal-dependent hydrolase [Prochlorococcus marinus str. AS9601] gi|145572764|sp|A2BNX7|RRMF_PROMS RecName: Full=Probable rRNA maturation factor gi|123197847|gb|ABM69488.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. AS9601] Length = 179 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 7/139 (5%) Query: 31 LCEVVFAKAVSNLIS------KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E VF ++ ++ Y + L L + I +LN ++ + PT+VL Sbjct: 40 FWEKVFLSWINTILKNEDYELPNYIFDKKSFSLGLQIISNQEIASLNKKWMQKNGPTDVL 99 Query: 85 SFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 SFP S + + LGDI ++ E+ ++ ++ L HGFLHLLG++H Sbjct: 100 SFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHN 159 Query: 144 DDKDACVMEGLERSILEDL 162 ++ D M + ++ L Sbjct: 160 NEHDLENMLNFQEYLITRL 178 >gi|304439779|ref|ZP_07399677.1| metal dependent hydrolase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371766|gb|EFM25374.1| metal dependent hydrolase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 144 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 7/128 (5%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K++ + + F + E+S+ F I LN +YRG+D+ T+VLSFP D Sbjct: 23 KSIEAALKEIEFT--DDYEVSVSFVGDDEIHELNRDYRGVDRTTDVLSFPM-----DDEF 75 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + MLGDIV+ + +A G + + +L +H LHL+G+DH +++D M +E Sbjct: 76 TNMLGDIVININKVIEQAKEYGHSEKREISYLTVHSSLHLMGFDHEEEEDKKEMRAVEDR 135 Query: 158 ILEDLGIN 165 ++E L I+ Sbjct: 136 VMEKLEIS 143 >gi|25091585|sp|Q8K9C1|RRMF_BUCAP RecName: Full=Probable rRNA maturation factor Length = 158 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 13/166 (7%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 +KK N L +Q +N + + +F K + ++ K K+N+ +++ Sbjct: 1 MKKKNNIILTIQKNCKNTKNIPK-------KYIFEKWIKKVLYK----KKNVNLINIRIV 49 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 D ++ +N +YRG +K TN+LSF F + +LGD+VL +IIE E+ K Sbjct: 50 DEREMKNINLKYRGKNKSTNILSF--KFDLFINKNQTLLGDLVLCKKIIEKESLKYQKTL 107 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E+ H+IIHG LHLLGYDH + K+ +ME +E I+ L PY Sbjct: 108 ESRWAHMIIHGTLHLLGYDHKNKKEKKIMEKIENKIMLFLNYEKPY 153 >gi|302338950|ref|YP_003804156.1| protein of unknown function UPF0054 [Spirochaeta smaragdinae DSM 11293] gi|301636135|gb|ADK81562.1| protein of unknown function UPF0054 [Spirochaeta smaragdinae DSM 11293] Length = 153 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 4/111 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEII 111 ELS++F + + LN +RGID PT+VLSF + S+ GDIV++ + + Sbjct: 37 ELSILFCNDDTMRDLNRTWRGIDAPTDVLSFSQLEEENVVSGSEDGSVYAGDIVISLDTL 96 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++ + + E L L+IHG LHL GYDH ++ + M L+ I++ Sbjct: 97 DLHSKLFSVAREEELKRLLIHGILHLAGYDHETNEGSEPMLTLQEEIVKTF 147 >gi|213692454|ref|YP_002323040.1| protein of unknown function UPF0054 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254800568|sp|B7GS82|RRMF_BIFLI RecName: Full=Probable rRNA maturation factor gi|213523915|gb|ACJ52662.1| protein of unknown function UPF0054 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458599|dbj|BAJ69220.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 182 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIE 112 +L+++F D + I L+ + ++ PT+V+SFP +LGDIV+ + Sbjct: 36 DLTIMFVDPNPIAELHMRWMNLEGPTDVMSFPMDELRPGDGKTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMLLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|145572760|sp|Q2JU40|RRMF_SYNJA RecName: Full=Probable rRNA maturation factor Length = 163 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E + + + + + ELSL T I LN E+R ID PT+VL+F S Sbjct: 19 EATWHRWFEVWLRELGVT--DPCELSLCLTSDEHIRQLNREFRHIDAPTDVLAFAAEETS 76 Query: 93 SDG-----CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + +LGDIV++ +A G+ L L HG LHLLG+DH D+ Sbjct: 77 TPVELQKITGVRLLGDIVISVPTACAQAKAQGQRLSRELAWLASHGLLHLLGWDHPDELS 136 Query: 148 ACVMEGLERSILEDL 162 M + +L + Sbjct: 137 LQRMLQQQHHLLAAI 151 >gi|157737127|ref|YP_001489810.1| putative metalloprotease [Arcobacter butzleri RM4018] gi|167016839|sp|A8ET67|RRMF_ARCB4 RecName: Full=Probable rRNA maturation factor gi|157698981|gb|ABV67141.1| conserved hypothetical protein [Arcobacter butzleri RM4018] Length = 140 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 5/110 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+ + I+ LN EYR IDKPT+VLSFP F + +LG IV++ + ++ +A Sbjct: 28 DIELIVVKNDEIQELNKEYRNIDKPTDVLSFPMNF---EVIDMPLLGSIVISTDFVQEKA 84 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F L IHG LHLLG+DH D E ++E + Sbjct: 85 KEFKHSFNEEFTLLFIHGLLHLLGFDHEIDN--GEHRLKEEELIEKFKLP 132 >gi|23465435|ref|NP_696038.1| putative metalloprotease [Bifidobacterium longum NCC2705] gi|46191169|ref|ZP_00120251.2| COG0319: Predicted metal-dependent hydrolase [Bifidobacterium longum DJO10A] gi|189439458|ref|YP_001954539.1| putative metalloprotease [Bifidobacterium longum DJO10A] gi|227545911|ref|ZP_03975960.1| metalloprotease [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622041|ref|ZP_04665072.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454042|ref|YP_003661185.1| hypothetical protein BLJ_0890 [Bifidobacterium longum subsp. longum JDM301] gi|312132866|ref|YP_004000205.1| metal-dependent hydrolase [Bifidobacterium longum subsp. longum BBMN68] gi|317482194|ref|ZP_07941216.1| hypothetical protein HMPREF0177_00609 [Bifidobacterium sp. 12_1_47BFAA] gi|322688981|ref|YP_004208715.1| hypothetical protein BLIF_0794 [Bifidobacterium longum subsp. infantis 157F] gi|322690950|ref|YP_004220520.1| hypothetical protein BLLJ_0760 [Bifidobacterium longum subsp. longum JCM 1217] gi|29428213|sp|Q8G5Z0|RRMF_BIFLO RecName: Full=Probable rRNA maturation factor gi|238692063|sp|B3DSC2|RRMF_BIFLD RecName: Full=Probable rRNA maturation factor gi|23326086|gb|AAN24674.1| conserved hypothetical protein with duf0054 [Bifidobacterium longum NCC2705] gi|189427893|gb|ACD98041.1| Putative metal-dependent hydrolase [Bifidobacterium longum DJO10A] gi|227213545|gb|EEI81394.1| metalloprotease [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515232|gb|EEQ55099.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516986|emb|CBK70602.1| conserved hypothetical protein TIGR00043 [Bifidobacterium longum subsp. longum F8] gi|296183473|gb|ADH00355.1| protein of unknown function UPF0054 [Bifidobacterium longum subsp. longum JDM301] gi|311773835|gb|ADQ03323.1| Putative metal-dependent hydrolase [Bifidobacterium longum subsp. longum BBMN68] gi|316916332|gb|EFV37732.1| hypothetical protein HMPREF0177_00609 [Bifidobacterium sp. 12_1_47BFAA] gi|320455806|dbj|BAJ66428.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320460317|dbj|BAJ70937.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 182 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAELHMRWMNLEGPTDVMSFPMDELRPGDGKTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMLLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|88809863|ref|ZP_01125369.1| hypothetical protein WH7805_10818 [Synechococcus sp. WH 7805] gi|88786247|gb|EAR17408.1| hypothetical protein WH7805_10818 [Synechococcus sp. WH 7805] Length = 200 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 4/136 (2%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 L E + + V L L T I LN +RG+ + T+VLSF Sbjct: 44 DLCRWLEALKQSWEQPTAPQ--LRDCLDVSLGLQLTGDREIAELNGRWRGLPQATDVLSF 101 Query: 87 PTAFASSD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + ++L LGDIV++ +A G E L L+ HG LHLLG+DH D Sbjct: 102 AALESEMPLQQATTLELGDIVVSVPTAARQAIEQGHSLERELQWLVSHGLLHLLGWDHPD 161 Query: 145 DKDACVMEGLERSILE 160 + M + +L Sbjct: 162 ETTLNAMIACQERLLA 177 >gi|315636838|ref|ZP_07892063.1| metalloprotease [Arcobacter butzleri JV22] gi|315478892|gb|EFU69600.1| metalloprotease [Arcobacter butzleri JV22] Length = 140 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 5/110 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+ + I+ LN EYR IDKPT+VLSFP F + +LG IV++ + ++ +A Sbjct: 28 DIELIVVKNDEIQELNKEYRNIDKPTDVLSFPMNF---EVIDMPLLGSIVISTDFVQEKA 84 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F L IHG LHLLG+DH D E ++E + Sbjct: 85 KEFKHSFNEEFTLLFIHGLLHLLGFDHEIDN--GEHRLKEEELIEKFKLP 132 >gi|91202468|emb|CAJ72107.1| hypothetical protein kustd1362 [Candidatus Kuenenia stuttgartiensis] Length = 144 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 5/141 (3%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ R + K + LI + + LS+V TD+ I LN + G D T+VL Sbjct: 4 EVVNRQKSYAIDEKRIVKLIKRVLKSENKDASLSIVVTDNKEIRRLNKAFLGHDYATDVL 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF D + + G+I+++ E+ A + E + +IHG LHL+GY+ Sbjct: 64 SFIY-----DASENHVAGEIIVSAEMAYKVAKEHCHDAEGEIALYLIHGLLHLIGYNDKK 118 Query: 145 DKDACVMEGLERSILEDLGIN 165 DA VM E+ +L LG N Sbjct: 119 KGDAKVMHRREKELLSKLGYN 139 >gi|307721060|ref|YP_003892200.1| hypothetical protein Saut_1140 [Sulfurimonas autotrophica DSM 16294] gi|306979153|gb|ADN09188.1| protein of unknown function UPF0054 [Sulfurimonas autotrophica DSM 16294] Length = 139 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 V+N + + ++ LV T + I+ +N EYR IDKPT+VLSFP Sbjct: 12 VNNTLLQKIASSVTDKDIELVVTTNDEIQQINKEYRNIDKPTDVLSFPYEE-----MPMS 66 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LG IV++ +++ +A LG E+ L IHG LHLLGYDH D M E ++ Sbjct: 67 PLGSIVVSQDLVIAKAKELGHAQEDEFTLLFIHGLLHLLGYDHEIDN--GQMRQEEERLI 124 Query: 160 EDLGIN 165 + + Sbjct: 125 NEFNLP 130 >gi|302039360|ref|YP_003799682.1| hypothetical protein NIDE4088 [Candidatus Nitrospira defluvii] gi|300607424|emb|CBK43757.1| conserved protein of unknown function, putative Metalloprotease [Candidatus Nitrospira defluvii] Length = 156 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 3/106 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 LSL R+ LN +R DK T+VL+F T G S +LGD+V++ +A Sbjct: 37 LSLEIVGDVRMRRLNRTFRHRDKTTDVLAFATR--EGPGPPSSLLGDVVISLPQAIRQAR 94 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILED 161 G+ ++ L L+IHG LHL GYDH + +A M E+++L Sbjct: 95 RHGQGVDHELAVLLIHGILHLCGYDHERSEAEAQRMSRREKALLRA 140 >gi|126695540|ref|YP_001090426.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9301] gi|166227511|sp|A3PAQ0|RRMF_PROM0 RecName: Full=Probable rRNA maturation factor gi|126542583|gb|ABO16825.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9301] Length = 179 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 7/139 (5%) Query: 31 LCEVVFAKAVSNLISKG------YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E VF ++ ++ K Y ++ L L + I +LN ++ + PT+VL Sbjct: 40 FWEKVFLSWINTILKKEDYELPNYIFEKKSFSLGLQIISNQEIASLNKKWMQKNGPTDVL 99 Query: 85 SFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 SFP S + + LGDI ++ E+ ++ ++ L HGFLHLLG++H Sbjct: 100 SFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKNSIYREMIWLASHGFLHLLGWEHN 159 Query: 144 DDKDACVMEGLERSILEDL 162 ++ D M + +++ L Sbjct: 160 NEHDLENMLNFQEYLIKKL 178 >gi|297287364|ref|XP_002803146.1| PREDICTED: putative metalloprotease C21orf57-like [Macaca mulatta] Length = 167 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YRG + PT+VLSFP F + LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRGRNVPTDVLSFPFHEHLKAGEFPLPEFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L HG HLLG+ H + + M E+++L++LG Sbjct: 93 LGVEYIFHQCKE-DEDYNDVLTVTATHGLCHLLGFTHSTEAEWQQMFQKEKAVLDELG 149 >gi|72383386|ref|YP_292741.1| hypothetical protein PMN2A_1550 [Prochlorococcus marinus str. NATL2A] gi|123620478|sp|Q46HJ0|RRMF_PROMT RecName: Full=Probable rRNA maturation factor gi|72003236|gb|AAZ59038.1| Protein of unknown function UPF0054 [Prochlorococcus marinus str. NATL2A] Length = 184 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 7/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVV-----FAKAVSNLISKGYFVKENIVELSLV 60 P DL + V + + E + F + S L + + L L Sbjct: 18 TPFPVQDLDVFVNSDTLELMKNPSKWIEEIGSWIRFIQVNSALKCPEIVLNSSQFSLGLE 77 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVL 118 T+ +I LN + G K T+VLSFP + G + LGDIV++ +A Sbjct: 78 LTNDKKILDLNHAWLGQSKATDVLSFPIIDETFFGVSNECIELGDIVISVPTAIRQAKDN 137 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L HG LHLLG+DH D++ M ++ +LE GI Sbjct: 138 NADLFRELRWLATHGLLHLLGWDHSDEESLHKMLLIQEQLLEIRGI 183 >gi|295396067|ref|ZP_06806250.1| probable metalloprotease [Brevibacterium mcbrellneri ATCC 49030] gi|294971008|gb|EFG46900.1| probable metalloprotease [Brevibacterium mcbrellneri ATCC 49030] Length = 159 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 10/149 (6%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E L D ++ VELS+ F + L Sbjct: 1 MSIELGNETELPVDLERVQECARFALDT----------VNVHPAVELSIRFISDDVMSEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 + + G+ T+V+SFP MLGDIV++ + +A G + + L Sbjct: 51 HETWMGLPGTTDVMSFPMDELKPGHDEPGMLGDIVISPTVAAEQAAAAGHSMSDEIYLLT 110 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +HG LHLLGYDH + M L+R +L Sbjct: 111 VHGILHLLGYDHGEPDQKSEMFALQRKLL 139 >gi|45657953|ref|YP_002039.1| hypothetical protein LIC12105 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|62901441|sp|Q72QK8|RRMF_LEPIC RecName: Full=Probable rRNA maturation factor gi|45601194|gb|AAS70676.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 141 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 15/128 (11%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--------------SSDG 95 + ++ ELSL+ ++ +N RG DK T+VLSFP F Sbjct: 11 LNDSECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFDFSPLQKILPKNTSSDQKM 70 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGL 154 + LG+IV++ + ++ +A +G ++ L++HGFLHLLGYDH DK+ +M+ Sbjct: 71 FPPVALGEIVISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHLLGYDHERGDKEEHIMKLK 130 Query: 155 ERSILEDL 162 E LE L Sbjct: 131 EDECLEIL 138 >gi|297622689|ref|YP_003704123.1| hypothetical protein Trad_0443 [Truepera radiovictrix DSM 17093] gi|297163869|gb|ADI13580.1| protein of unknown function UPF0054 [Truepera radiovictrix DSM 17093] Length = 147 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 2/134 (1%) Query: 26 IHLRTLCEVVFAKAVSNLI-SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 I + F K + ++ + + EL++V D +I LN +RG D PT+VL Sbjct: 2 IEILAERPYPFRKRLQAVVTALKAELGAGDKELTIVLVDDPKIRELNRAHRGEDAPTDVL 61 Query: 85 SFPTAFASSDGCSS-LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 S+P A G LGDIV++ + +A G E +V L HG HLLG+DH Sbjct: 62 SYPLAEPDDAGFPEVPHLGDIVISLDTAARQAAAQGHTLELEVVTLAAHGLTHLLGFDHP 121 Query: 144 DDKDACVMEGLERS 157 ++ + Sbjct: 122 TEEAWTTFRQNQAR 135 >gi|24214384|ref|NP_711865.1| putative metal-dependent hydrolase [Leptospira interrogans serovar Lai str. 56601] gi|46577486|sp|Q8F5J7|RRMF_LEPIN RecName: Full=Probable rRNA maturation factor gi|24195321|gb|AAN48883.1| predicted metal-dependent hydrolase [Leptospira interrogans serovar Lai str. 56601] Length = 141 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 15/128 (11%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--------------SSDG 95 + ++ ELSL+ ++ +N RG DK T+VLSFP F Sbjct: 11 LNDSECELSLLLVGDSDMKEINRLRRGKDKTTDVLSFPLEFDFSPLQKILPKNTSSDQKM 70 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGL 154 + LG+IV++ + ++ +A +G ++ L++HGFLHLLGYDH DK+ +M+ Sbjct: 71 FPPIALGEIVISIDTLQKQAKEIGHSEKDEFYRLLVHGFLHLLGYDHERGDKEEHIMKLK 130 Query: 155 ERSILEDL 162 E LE L Sbjct: 131 EDECLEIL 138 >gi|149546328|ref|XP_001514071.1| PREDICTED: similar to C21orf57 isoform A protein [Ornithorhynchus anatinus] Length = 165 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 10/140 (7%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-- 88 + V + + L + +L +V D+ I+ +N YR + PT+VLSFP Sbjct: 14 IRRVPLRQKIETL---RRILGVRRFDLGIVCVDNKNIQRVNNTYRQKNVPTDVLSFPFHE 70 Query: 89 -----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 LGD+ L E I + ++F L + HG HLLGY H Sbjct: 71 NLKAGEMPQPRFPEDYNLGDVFLGVEYIFQQCQEGNEDFYGVLTVIAAHGLCHLLGYRHD 130 Query: 144 DDKDACVMEGLERSILEDLG 163 + + M E+ IL++L Sbjct: 131 TEAEWQEMYQKEKHILDELN 150 >gi|183601565|ref|ZP_02962935.1| hypothetical protein BIFLAC_02897 [Bifidobacterium animalis subsp. lactis HN019] gi|219683900|ref|YP_002470283.1| metalloprotease [Bifidobacterium animalis subsp. lactis AD011] gi|241190936|ref|YP_002968330.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196342|ref|YP_002969897.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254800500|sp|B8DUM8|RRMF_BIFA0 RecName: Full=Probable rRNA maturation factor gi|183219171|gb|EDT89812.1| hypothetical protein BIFLAC_02897 [Bifidobacterium animalis subsp. lactis HN019] gi|219621550|gb|ACL29707.1| conserved hypothetical protein [Bifidobacterium animalis subsp. lactis AD011] gi|240249328|gb|ACS46268.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250896|gb|ACS47835.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793925|gb|ADG33460.1| putative metalloprotease [Bifidobacterium animalis subsp. lactis V9] Length = 181 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIE 112 EL++ F D I L+ + + PT+V+SFP MLGDIV+ + + Sbjct: 36 ELTITFVDPEPIAELHERWMDLQGPTDVMSFPMDELRPGDERNEPEGMLGDIVICPWVAQ 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH + M GL+R +L Sbjct: 96 QQAQAAGHSTMEEMMLLTIHGVLHLLGYDHHTREQERQMFGLQRQLL 142 >gi|146321259|ref|YP_001200970.1| metalloprotease [Streptococcus suis 98HAH33] gi|223932648|ref|ZP_03624647.1| protein of unknown function UPF0054 [Streptococcus suis 89/1591] gi|253752116|ref|YP_003025257.1| hypothetical protein SSUSC84_1260 [Streptococcus suis SC84] gi|253753941|ref|YP_003027082.1| hypothetical protein SSU1227 [Streptococcus suis P1/7] gi|253755184|ref|YP_003028324.1| hypothetical protein SSUBM407_0562 [Streptococcus suis BM407] gi|330832406|ref|YP_004401231.1| putative metalloprotease [Streptococcus suis ST3] gi|166231363|sp|A4W2I1|RRMF_STRS2 RecName: Full=Probable rRNA maturation factor gi|145692065|gb|ABP92570.1| hypothetical protein SSU98_1412 [Streptococcus suis 98HAH33] gi|223898618|gb|EEF64980.1| protein of unknown function UPF0054 [Streptococcus suis 89/1591] gi|251816405|emb|CAZ52036.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251817648|emb|CAZ55396.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251820187|emb|CAR46557.1| conserved hypothetical protein [Streptococcus suis P1/7] gi|292558698|gb|ADE31699.1| hypothetical protein SSGZ1_1242 [Streptococcus suis GZ1] gi|319758492|gb|ADV70434.1| putative metalloprotease [Streptococcus suis JS14] gi|329306629|gb|AEB81045.1| putative metalloprotease [Streptococcus suis ST3] Length = 165 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 17/146 (11%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AF 90 + L + + E+++ F D+ R+ +N EYRGID+PT+V+S F Sbjct: 18 EQITELLQFAAEKIGKQNKEMAVTFVDNKRVHEVNLEYRGIDRPTDVVSLEYKPESEIVF 77 Query: 91 ASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 D + L G++ ++ + +A G +E + L +HGFLH+ G Sbjct: 78 DEEDLLDNPELAEMMEDFDAYIGELYISIDKAREQAEDYGHSYEREMGFLAVHGFLHING 137 Query: 140 YDHVDDKDACVMEGLERSILEDLGIN 165 YDH ++ M GL+ IL G+ Sbjct: 138 YDHYTPEEEAEMFGLQEEILTAYGLT 163 >gi|51245457|ref|YP_065341.1| pyridoxal phosphate biosynthetic protein [Desulfotalea psychrophila LSv54] gi|50876494|emb|CAG36334.1| probable pyridoxal phosphate biosynthetic protein [Desulfotalea psychrophila LSv54] Length = 393 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 4/113 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIEI 113 L++VF ++ N YR PTNVLSFP A S + + LGDI+++ + Sbjct: 37 LNIVFVSDAQMTWFNEHYREKKGPTNVLSFPFAEGSEEFLQQIPVHELGDIIISVDTAMR 96 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILEDLGIN 165 EA G+ + L L++HG LHL+GYDH +DA +ME E+ +L++ IN Sbjct: 97 EAIEYGQTISHRLNWLMVHGILHLVGYDHERGPEDALLMEDKEQVLLKEYAIN 149 >gi|255027003|ref|ZP_05298989.1| putative metalloprotease [Listeria monocytogenes FSL J2-003] Length = 138 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 18/143 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L++ + E DE + L E + + Y E ELSL FT + I + Sbjct: 4 LEIDLLDETKNLLDED--KQLVENILQ------FAAEYLKIEQGTELSLTFTTNEGIREI 55 Query: 71 NFEYRGIDKPTNVLSFPTAF----------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 N EYR D+ T+V+SF D + MLGDI+++ E E +A G Sbjct: 56 NREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIISTEKAEEQAKDYGH 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHV 143 L L +HG LHLLGYDH+ Sbjct: 116 TKARELGFLAVHGLLHLLGYDHM 138 >gi|197303388|ref|ZP_03168427.1| hypothetical protein RUMLAC_02110 [Ruminococcus lactaris ATCC 29176] gi|197297386|gb|EDY31947.1| hypothetical protein RUMLAC_02110 [Ruminococcus lactaris ATCC 29176] Length = 165 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 16/138 (11%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG-------- 95 + Y E++L+ T++ I +N E RGID+PT+VLSFP + G Sbjct: 27 AALDYAECPYEAEINLLLTENQEIHEMNLEQRGIDRPTDVLSFPMIEYDAPGDFSVIDEE 86 Query: 96 --------CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 LMLGDIV++ E + +A G + LI H LHL GYDH+++++ Sbjct: 87 TGDAFNPETGELMLGDIVISKEKVLSQAEEYGHSPKREYAFLIAHSMLHLFGYDHMEEEE 146 Query: 148 ACVMEGLERSILEDLGIN 165 ME +R+I+E +GI Sbjct: 147 RAEMEAHQRAIMEKVGIP 164 >gi|145572767|sp|A2BUF9|RRMF_PROM5 RecName: Full=Probable rRNA maturation factor Length = 180 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 6/150 (4%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + E++ W + + LC + + N + + I LSL +++ I ++N ++ Sbjct: 34 LIFESSFWEEVL----LCWINIILSEKNTSFPNFIFDKKIFSLSLQIINNNEISSINQKW 89 Query: 75 RGIDKPTNVLSFPT--AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 PT+VLSFP ++ + + LGD+ ++ E+ ++ + ++ L H Sbjct: 90 MDKSGPTDVLSFPMISDEDTTKNLNFIELGDLFISLEMAFQQSLEFDHSIKKEMLWLASH 149 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDL 162 GFLHLLG++H DD + M + ++ L Sbjct: 150 GFLHLLGWEHNDDNELDNMLNFQEYLISKL 179 >gi|124024971|ref|YP_001014087.1| metal-dependent hydrolase [Prochlorococcus marinus str. NATL1A] gi|123960039|gb|ABM74822.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. NATL1A] Length = 184 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 7/166 (4%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVV-----FAKAVSNLISKGYFVKENIVELSLV 60 P DL + V + + E + F + S L + + L L Sbjct: 18 TPFPVQDLDVFVNSDTLELMKNPSKWIEEIGSWIRFIQVNSALKCPEIVLNSSQFSLGLE 77 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVL 118 T+ +I LN + G K T+VLSFP + G + LGDIV++ +A Sbjct: 78 LTNDKKILDLNHAWLGQSKTTDVLSFPIIDETFFGVSNECIELGDIVISVPTAIRQAKDN 137 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + L L HG LHLLG+DH D++ M ++ +L+ GI Sbjct: 138 NADLFRELRWLATHGLLHLLGWDHSDEESLNKMLLIQEQLLDIRGI 183 >gi|291456691|ref|ZP_06596081.1| putative metalloprotease [Bifidobacterium breve DSM 20213] gi|291381968|gb|EFE89486.1| putative metalloprotease [Bifidobacterium breve DSM 20213] Length = 183 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP +LGDIV+ + Sbjct: 36 DLTIMFVDPDPIAELHMRWMSLEGPTDVMSFPMDELRPGDGKTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMLLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|166031812|ref|ZP_02234641.1| hypothetical protein DORFOR_01513 [Dorea formicigenerans ATCC 27755] gi|166028265|gb|EDR47022.1| hypothetical protein DORFOR_01513 [Dorea formicigenerans ATCC 27755] Length = 164 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 17/154 (11%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L C+ + + ++ + Y V+++L+ T + I +N ++R ID+ T+VLS Sbjct: 11 LKLPFDCQALAREVINGAL--EYIHCPYEVQVNLLLTMNDEIHEMNRDFRNIDRATDVLS 68 Query: 86 FPTAFAS---------------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 FP L+LGDIV++ E + +A G + LI Sbjct: 69 FPMLEYETPGDFSHFESEEDCFDPETGELLLGDIVISKEKVIAQAEEYGHSVKREYAFLI 128 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 H LHL GYDH+++++ ME L+R IL +L I Sbjct: 129 AHSVLHLSGYDHMEEEERIEMETLQREILNELNI 162 >gi|291296194|ref|YP_003507592.1| hypothetical protein Mrub_1814 [Meiothermus ruber DSM 1279] gi|290471153|gb|ADD28572.1| protein of unknown function UPF0054 [Meiothermus ruber DSM 1279] Length = 140 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 L+L+ T+ + I L ++ G D PT+VLSFPT + D LGDIV++ + +A Sbjct: 37 LTLILTNDNEIRALKQQHWGEDAPTDVLSFPT-YEPGDPFIPPHLGDIVISLDTARRQAE 95 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LG ++ + L H HLLG+DH + + ++ ILE Sbjct: 96 QLGHSLQHEVKVLAAHSLWHLLGHDHRSETEWEGFRRVQARILE 139 >gi|116004463|ref|NP_001070588.1| rRNA maturation factor homolog [Bos taurus] gi|81673818|gb|AAI09796.1| Hypothetical protein MGC134244 [Bos taurus] gi|296490846|gb|DAA32959.1| hypothetical protein LOC768063 [Bos taurus] Length = 164 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 8/114 (7%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIVLAYE 109 L +V D+ +I+ +N YR D PT+VLSFP D LGDI L E Sbjct: 37 LGVVCVDNRKIQQMNRIYREQDTPTDVLSFPFHENLKAGEIPQPDFPDDYNLGDIFLGVE 96 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 I + +++ + L HG HLLG+ H + + M E+ +L++L Sbjct: 97 FIFQQCKE-DEDYYDILTVTATHGLCHLLGFTHSTEAEWQKMYQKEKQVLQELN 149 >gi|317968159|ref|ZP_07969549.1| metal-dependent hydrolase [Synechococcus sp. CB0205] Length = 187 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 28/177 (15%) Query: 12 DLQIAVENALWGDEIHLRTLCEV--------VFAKAVSNLISK-----GYFVKENIVELS 58 DL +A E E + T E+ + ++ +S+ ++ L Sbjct: 6 DLDLAFEAVEDLPEALVETAAELCDPIQGIEPWHALINGWLSQLKGELPEPLQAPAYSLG 65 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---------------LGD 103 L + I LN ++R + T+VL+F D ++ LGD Sbjct: 66 LSLVNDEEIAALNSDWRDKEGATDVLAFAAQDDGLDDAPAIPMPDFDGEEGLLDALELGD 125 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 IV++ E +A G L+ L HG LHLLG+DH DD M ++ +L Sbjct: 126 IVISVETAARQAPEHGHNLREELLFLATHGLLHLLGWDHPDDASLEAMLQRQQQLLA 182 >gi|145572770|sp|A0LK95|RRMF_SYNFM RecName: Full=Probable rRNA maturation factor Length = 159 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 1/111 (0%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 ELS++ D + LN YR D T+VLSFP +LGD+V+ + + Sbjct: 35 DAELSILIVDDEEMAGLNSTYRRKDTSTDVLSFPMREGEFGDVCEEVLGDVVICAPMAKR 94 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLG 163 + G F++ + L++HG LHL+G+DH +A M +L+ LG Sbjct: 95 MGELHGASFQSVMDLLLVHGILHLVGHDHEQGRGEAARMADKTMELLKMLG 145 >gi|312880027|ref|ZP_07739827.1| protein of unknown function UPF0054 [Aminomonas paucivorans DSM 12260] gi|310783318|gb|EFQ23716.1| protein of unknown function UPF0054 [Aminomonas paucivorans DSM 12260] Length = 171 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 6/134 (4%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 L+ V+A+ + + + E+S+ F D + + LN YR ++ PT+VLSFP Sbjct: 24 LQDRIRCVWARLLLAEGTLPSGEETREAEVSVSFVDPNSMAELNRTYRQVEGPTDVLSFP 83 Query: 88 TAFASSDGCSSL----MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 C LGD+V+ + + + G E ++ ++ HGFLHLLG+DH Sbjct: 84 LWEEEGRFCPPPWEVLPLGDVVICPDQV--QPQEGGGSKERQMLLVLHHGFLHLLGWDHD 141 Query: 144 DDKDACVMEGLERS 157 + M L+ Sbjct: 142 TPQKEQDMWELQER 155 >gi|313678249|ref|YP_004055989.1| hypothetical protein MBOVPG45_0124 [Mycoplasma bovis PG45] gi|312950195|gb|ADR24790.1| conserved hypothetical protein TIGR00043 [Mycoplasma bovis PG45] Length = 152 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 1/123 (0%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-DGCSSLMLG 102 + + + + + + ++ +I+ LN +YR D T++LSF S L LG Sbjct: 27 LQSYFKLDSKEISVDVSIVNNRKIKKLNKQYRQKDYATDILSFDFGDKSLYKDMPFLPLG 86 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++V+++E +E +A G +L HG +HL+GYDH + + M + +I + L Sbjct: 87 ELVISHEKVEEQAKEFGHSLRREYCYLYAHGLIHLMGYDHELEDERVAMNMMVDAIFDPL 146 Query: 163 GIN 165 I Sbjct: 147 NIT 149 >gi|167946144|ref|ZP_02533218.1| hypothetical protein Epers_06212 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 100 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 59 LVFTDSHRIE-TLNFEYRGIDKPTNVLSFPTAFASSDGCS--SLMLGDIVLAYEIIEIEA 115 + D + T +YRG D+PTNVLSFP +LGD+V+ ++ EA Sbjct: 2 IRIVDEAESQGTEXRDYRGKDRPTNVLSFPFETPPELPAEAAGNLLGDLVICAPVVAREA 61 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 GK +H +H+++HG LHL G DH +D +A +M G Sbjct: 62 AAQGKSPISHWIHMVVHGVLHLQGLDHQNDAEAGIMRG 99 >gi|225715688|gb|ACO13690.1| metalloprotease C21orf57 [Esox lucius] Length = 168 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 7/144 (4%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +L+ + + A+ ++ + + + +L ++ D+ +I+ +N YR + PT+VLSF Sbjct: 7 NLQNVVPLRRARLRKDVETLRHILGIQKFDLGVICVDNRKIQRINNIYRKNNSPTDVLSF 66 Query: 87 PTAFASSDGCSSLML-------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 P G L GDI L E + + ++ L + HG HLLG Sbjct: 67 PFYEELRPGKLPCPLHRDEQNLGDIFLGVEYLMKQCQQESQDLHETLTSVTAHGICHLLG 126 Query: 140 YDHVDDKDACVMEGLERSILEDLG 163 Y H +++ M E IL + Sbjct: 127 YRHETEEEWKEMLQKESYILNEFN 150 >gi|254526914|ref|ZP_05138966.1| hypothetical protein P9202_1567 [Prochlorococcus marinus str. MIT 9202] gi|221538338|gb|EEE40791.1| hypothetical protein P9202_1567 [Prochlorococcus marinus str. MIT 9202] Length = 179 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 + E+ W + + ++ K L Y ++ L L + I +LN ++ Sbjct: 34 LIFESIFW--KKIFLSWINIILKKKDYEL--PNYIFEKKSFSLGLQIISNQEIASLNMKW 89 Query: 75 RGIDKPTNVLSFPTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + PT+VLSFP S + + LGDI +++E+ ++ ++ L HG Sbjct: 90 MQKNGPTDVLSFPIISDESLNNLDHIELGDIFISFEMALEQSYEYKHSIYREMIWLASHG 149 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDL 162 FLHLLG++H ++ D M + ++ L Sbjct: 150 FLHLLGWEHNNENDLENMLNFQEYLITRL 178 >gi|118475619|ref|YP_891672.1| putative metalloprotease [Campylobacter fetus subsp. fetus 82-40] gi|145558830|sp|A0RN89|RRMF_CAMFF RecName: Full=Probable rRNA maturation factor gi|28974225|gb|AAO64226.1| hypothetical protein Cf0020 [Campylobacter fetus] gi|118414845|gb|ABK83265.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus 82-40] Length = 134 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 7/111 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+ LVF + + +N + RG+DK T+VLSFP + +G IV+ ++ + Sbjct: 22 AEVELVFVSNEEMREINRDKRGMDKTTDVLSFPLTY-----VPHFPIGSIVINTDLASSK 76 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 A LG ++ + L HG LH+LG+DH +D M E SI+E +G+ Sbjct: 77 ALELGHSTDDEIALLFTHGLLHILGFDHENDD--GEMRRKEISIMEHMGLP 125 >gi|269115217|ref|YP_003302980.1| hypothetical protein MHO_4420 [Mycoplasma hominis] gi|268322842|emb|CAX37577.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114] Length = 150 Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 29 RTLCEVVFAKAVSNLI--SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 ++ F K +++ SK F + + + ++F + +++ LN +R + T++LSF Sbjct: 9 QSFHRFNFMKDFLDILEESKIEFGAKKSLCVDVMFVTAKKMKKLNNLHRQKNYTTDILSF 68 Query: 87 PTAFASS-DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 P + + LG I+++ I+ +A ++ HG HL G+DH+ + Sbjct: 69 PLDSQEELNFLDEIELGQIIISPWKIKKQAKEFNHSLRREFCYIFAHGIAHLFGFDHITE 128 Query: 146 KDACVMEGLERSILEDLGIN 165 ++A +M G +I+ L I Sbjct: 129 EEAKIMNGHVDNIMNKLNIK 148 >gi|320450010|ref|YP_004202106.1| hypothetical protein TSC_c09320 [Thermus scotoductus SA-01] gi|320150179|gb|ADW21557.1| conserved hypothetical protein [Thermus scotoductus SA-01] Length = 138 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 +A+S L+ + + ++++ T RI L E+ G D+ T+VLSFP + D Sbjct: 17 LRRALSALMEELGVGDKA---VTVILTGDRRIRVLKREWWGEDEATDVLSFP-HYEPGDP 72 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LGDI ++ + + +A G E ++ L HG HLLG+DH ++D ++ Sbjct: 73 FVPPHLGDIWISLDTAKRQAEERGVPLEEEVLVLAAHGLWHLLGHDHQKEEDWEGFHRVQ 132 Query: 156 RSILE 160 IL Sbjct: 133 ERILA 137 >gi|126314349|ref|XP_001365786.1| PREDICTED: similar to C21orf57 isoform A protein [Monodelphis domestica] Length = 166 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLM 100 + + +L +V D+ I+ LN YR PT+VLSFP + L Sbjct: 28 HILGIRRFDLGVVCVDNQGIQRLNRIYRQAHGPTDVLSFPFHEDLRAGAVPQPECPDDLN 87 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LGDI L E I + G+ + + L HG HLLGY H + M E+ LE Sbjct: 88 LGDIFLGVEYIFHQCQENGENYYDILTVTAAHGLCHLLGYKHNTAAEWREMFQKEKLTLE 147 Query: 161 DLG 163 +L Sbjct: 148 ELN 150 >gi|224418521|ref|ZP_03656527.1| putative metalloprotease [Helicobacter canadensis MIT 98-5491] gi|253826924|ref|ZP_04869809.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142048|ref|ZP_07804241.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510330|gb|EES88989.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131079|gb|EFR48696.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 152 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 14/139 (10%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 L E VF K + +L +K EL + D+ I+ LN +R DKPT+VLSF Sbjct: 18 DLFLFLEKVFDKILLDL-----GLKNKQCEL--LLVDNPTIQNLNKIHRNKDKPTDVLSF 70 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 P + S +LG IV++ + I+ + + + L IHG LHLLG+DH +K Sbjct: 71 PL-----ESDFSPLLGSIVISLDFIKQNSEKYHHTPNDEMALLFIHGILHLLGFDH--EK 123 Query: 147 DACVMEGLERSILEDLGIN 165 D E+ +++ + Sbjct: 124 DRGEQRQKEKELIDFFHLP 142 >gi|332296322|ref|YP_004438245.1| metalloprotease ybeY [Thermodesulfobium narugense DSM 14796] gi|332179425|gb|AEE15114.1| metalloprotease ybeY [Thermodesulfobium narugense DSM 14796] Length = 149 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 16/143 (11%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R ++ + K + F+ ELSL+ TD++ I LN E+R D PT+VLSF Sbjct: 8 RKRYKLNYIKLKKAIKESMNFLGVGDCELSLLLTDNNEIRILNKEFRKSDCPTDVLSF-- 65 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIE----------ANVLGKEFENHLVHLIIHGFLHLL 138 + +LGDIV++ E + V K FE++L+ L+IHG LH L Sbjct: 66 ----EGDMNLGVLGDIVISVERAREDFVSGSYGEIIPEVAKKNFESYLLWLVIHGILHNL 121 Query: 139 GYDHVDDKDACVMEGLERSILED 161 G+DH DD M ER LE Sbjct: 122 GFDHNDDVSERKMRSKERDCLEK 144 >gi|57239608|ref|YP_180744.1| hypothetical protein Erum8820 [Ehrlichia ruminantium str. Welgevonden] gi|58579597|ref|YP_197809.1| hypothetical protein ERWE_CDS_09330 [Ehrlichia ruminantium str. Welgevonden] gi|62901161|sp|Q5HA01|RRMF_EHRRW RecName: Full=Probable rRNA maturation factor gi|57161687|emb|CAH58617.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58418223|emb|CAI27427.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 157 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I V W I + F K V + E +S+V ++ ++ LN+ Sbjct: 2 IEINVYYKKWYSTIKKPKI----FVKNVIKSSLINLNIYEYKPIISIVLANNILLQKLNY 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EYR +KPTNVLSFP LG+I L+ + + E+ L E+H H++IH Sbjct: 58 EYRNKNKPTNVLSFPY----DKLNKKCNLGEIFLSLDTLIQESIDLNIPIEHHTCHMLIH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LH+L Y+H + +ME +E +L+ LGI +PY Sbjct: 114 GLLHILDYNHEEPLMQYIMESIEIKLLDKLGIRNPY 149 >gi|315226507|ref|ZP_07868295.1| metalloprotease [Parascardovia denticolens DSM 10105] gi|315120639|gb|EFT83771.1| metalloprotease [Parascardovia denticolens DSM 10105] Length = 175 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 13/155 (8%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + R+ + I E + + L + + S +LS+ F D + Sbjct: 1 MDRMSVDITNETEWGINPLVFSDLAVWTMDQMRVSTES----------DLSIAFIDPAPM 50 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 L+ + ++ PT+V+SFP MLGDI+L E+ +A G Sbjct: 51 AELHLRWMNLEGPTDVMSFPMDELRPGTETDRDEGMLGDIILCPEVAADQAAAAGHSTIE 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ L IHG LHLLGYDH +D M G++R +L Sbjct: 111 EMMLLTIHGVLHLLGYDHATPEDEKRMFGIQRQLL 145 >gi|15639637|ref|NP_219087.1| putative metalloprotease [Treponema pallidum subsp. pallidum str. Nichols] gi|189025875|ref|YP_001933647.1| metalloprotease [Treponema pallidum subsp. pallidum SS14] gi|6686126|sp|O83656|RRMF_TREPA RecName: Full=Probable rRNA maturation factor gi|238689336|sp|B2S3N9|RRMF_TREPS RecName: Full=Probable rRNA maturation factor gi|3322948|gb|AAC65623.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018450|gb|ACD71068.1| hypothetical protein TPASS_0650 [Treponema pallidum subsp. pallidum SS14] gi|291060019|gb|ADD72754.1| putative metalloprotease [Treponema pallidum subsp. pallidum str. Chicago] Length = 160 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL--MLGDIVLAYEIIEI 113 +LS+V I LN++YRGID PT+VLSF D + + GDI+++ E + Sbjct: 40 DLSIVCCTDAFIRRLNYDYRGIDSPTDVLSFENDGEYCDDAGTRFFLAGDIIISLESVRE 99 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + ++IHG LHL G DH D+ M L+ IL Sbjct: 100 NSERFHVAAHEEFKRVLIHGILHLSGMDHQDNSPGQEMLRLQERILAQ 147 >gi|303232221|ref|ZP_07318920.1| translation metalloprotein YbeY [Atopobium vaginae PB189-T1-4] gi|302481631|gb|EFL44692.1| translation metalloprotein YbeY [Atopobium vaginae PB189-T1-4] Length = 208 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 3/115 (2%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAY 108 +S+ I +N E+RG DKPT+V+S LGDI+LA Sbjct: 76 ARPCTISISIVTIDHIHDINREFRGQDKPTDVISIECERPDDPSLAAGEPCELGDIILAS 135 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 E I +A+ G + ++ L+IH LHLLGYDH++D DA VME LE +L ++G Sbjct: 136 EYIAHQADDFGMDHQDECRLLLIHAMLHLLGYDHLNDADAEVMEALEDRLLIEVG 190 >gi|58617651|ref|YP_196850.1| hypothetical protein ERGA_CDS_09240 [Ehrlichia ruminantium str. Gardel] gi|62901147|sp|Q5FGP9|RRMF_EHRRG RecName: Full=Probable rRNA maturation factor gi|58417263|emb|CAI28376.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 157 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I V W I + F K V + E +S+V ++ ++ LN+ Sbjct: 2 IEINVYYKKWYSTIKKPKI----FVKNVIKSSLINLNIYEYKPIISIVLANNILLQKLNY 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 EYR +KPTNVLSFP LG+I L+ + + E+ L E+H H++IH Sbjct: 58 EYRNKNKPTNVLSFPY----DKLNKKCNLGEIFLSLDTLIEESIDLNIPIEHHTCHMLIH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LH+L Y+H + +ME +E +L+ LGI +PY Sbjct: 114 GLLHILDYNHEEPLMQYIMESIEIKLLDKLGIRNPY 149 >gi|146319053|ref|YP_001198765.1| metalloprotease [Streptococcus suis 05ZYH33] gi|166200391|sp|A4VW76|RRMF_STRSY RecName: Full=Probable rRNA maturation factor gi|145689859|gb|ABP90365.1| hypothetical protein SSU05_1399 [Streptococcus suis 05ZYH33] Length = 165 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 17/146 (11%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT------AF 90 + L + + E+++ F D+ R+ +N EYRGID+PT+V+S F Sbjct: 18 EQITELLQFAAEKIGKQNKEMAVTFVDNKRVHEVNLEYRGIDRPTDVVSLEYKPESEIVF 77 Query: 91 ASSDGCSSLML-----------GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 D + L G++ ++ + +A G +E + L +HGFLH+ G Sbjct: 78 DEEDLLDNPELAEMMEDFDAYIGELYISIDKAREQAEDYGHSYEREMGFLAVHGFLHING 137 Query: 140 YDHVDDKDACVMEGLERSILEDLGIN 165 YDH ++ M GL+ IL G+ Sbjct: 138 YDHYTPEEEAEMLGLQEEILTAYGLT 163 >gi|46198991|ref|YP_004658.1| metal-binding protein [Thermus thermophilus HB27] gi|55981014|ref|YP_144311.1| hypothetical protein TTHA1045 [Thermus thermophilus HB8] gi|62901332|sp|Q72JT5|RRMF_THET2 RecName: Full=Probable rRNA maturation factor gi|62901421|sp|Q5SJG3|RRMF_THET8 RecName: Full=Probable rRNA maturation factor gi|46196615|gb|AAS81031.1| hypothetical conserved metal-binding protein [Thermus thermophilus HB27] gi|55772427|dbj|BAD70868.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 139 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 +A++ L+ + + ++++ T R+ L E+ G D+ T+VLSFP + D Sbjct: 18 LRRALAALMEELGVGDKG---VTVILTGDRRLRALKREWWGEDEATDVLSFP-HYEPGDP 73 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LGDI ++ + +A G E ++ L HG HLLG+DH ++D ++ Sbjct: 74 FVPPHLGDIWISLDTARRQAEARGASLEEEVLVLAAHGLWHLLGHDHQKEEDWEGFRRVQ 133 Query: 156 RSILE 160 IL Sbjct: 134 ERILA 138 >gi|330994668|ref|ZP_08318591.1| Putative metalloprotease [Gluconacetobacter sp. SXCC-1] gi|329758309|gb|EGG74830.1| Putative metalloprotease [Gluconacetobacter sp. SXCC-1] Length = 170 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 14 QIAVENALWGDEI-HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 I V + W + R L A++ G +++V D + +N+ Sbjct: 12 DITVADRRWNRAVRQPRHLVTRAVDAALAATGRYGP--------VTVVLADDRTVRHMNW 63 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +RG ++PTNVL+F +A+ L GDI++A+E + EA G+ HL HL++H Sbjct: 64 RHRGRNRPTNVLTF--EYAAPHAPGGLWGGDIIIAFETLAREARAAGRSMAAHLAHLVVH 121 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 G LHL YDH +A ME E IL LG +P++ Sbjct: 122 GVLHLAQYDHHHPGEAREMEMEEARILSTLGFANPWKA 159 >gi|160902312|ref|YP_001567893.1| hypothetical protein Pmob_0846 [Petrotoga mobilis SJ95] gi|189040617|sp|A9BHG1|RRMF_PETMO RecName: Full=Probable rRNA maturation factor gi|160359956|gb|ABX31570.1| protein of unknown function UPF0054 [Petrotoga mobilis SJ95] Length = 143 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 15/151 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++I V N EI+ + + ++ K + N + KG F EL+++ TD I N Sbjct: 1 MKINVINQQELREINSKKIKDIA-KKVLLNEVGKGNF------ELNILITDDKSITEFNK 53 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 YRG PT+VLSF G S ++GDIV++ E IE +A G FE +++IH Sbjct: 54 -YRGKSTPTDVLSFSY------GLSEPVIGDIVISVESIEKQAPDFGNSFEEEFYYILIH 106 Query: 133 GFLHLLGYDHVD-DKDACVMEGLERSILEDL 162 G LH++GYDH + ++DA M ++ L Sbjct: 107 GLLHIVGYDHENSEEDAKKMFEVQDQYFHQL 137 >gi|294786871|ref|ZP_06752125.1| putative metalloprotease [Parascardovia denticolens F0305] gi|294485704|gb|EFG33338.1| putative metalloprotease [Parascardovia denticolens F0305] Length = 172 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIE 112 +LS+ F D + L+ + ++ PT+V+SFP MLGDI+L E+ Sbjct: 36 DLSIAFIDPAPMAELHLRWMNLEGPTDVMSFPMDELRPGTETDRDEGMLGDIILCPEVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH +D M G++R +L Sbjct: 96 DQAAAAGHSTIEEMMLLTIHGVLHLLGYDHATPEDEKRMFGIQRQLL 142 >gi|326432698|gb|EGD78268.1| hypothetical protein PTSG_09333 [Salpingoeca sp. ATCC 50818] Length = 180 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 13/157 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+IAVE A + + ++L ++ ++++ F + R+ +N Sbjct: 2 LRIAVETAG---RTAAPSSVSCLLPSLRAHLKCARELLRVADYDMAVTFVSAERMREINQ 58 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLM-------LGDIVLAYEIIEIEANVLGK-EFEN 124 +YRG+ T+VLSFP ++ G + LGDI L+ + I +A ++ Sbjct: 59 QYRGVGASTDVLSFPFHEVTTPGTLPPVEFEDEKDLGDIFLSLDTI--QAQQTSHLTLQD 116 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 L + HG HLLGYDH +A M ER ILE Sbjct: 117 ELKVVATHGLCHLLGYDHDTQANATKMAEKEREILER 153 >gi|152990533|ref|YP_001356255.1| hypothetical protein NIS_0786 [Nitratiruptor sp. SB155-2] gi|172048729|sp|A6Q339|RRMF_NITSB RecName: Full=Probable rRNA maturation factor gi|151422394|dbj|BAF69898.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 144 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + L+ D R+ TLN YR IDK T+VLSFP + LG IV+ + + A Sbjct: 34 VELMIVDDERMRTLNKTYRDIDKTTDVLSFPMQE-----IPNAPLGSIVINADKVLHTAK 88 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG ++ L IHG LHLLGYDH D M +E ++ + + Sbjct: 89 ELGHSAKDEFALLYIHGLLHLLGYDHESDN--GEMRAMEEKLIIEYNLP 135 >gi|194226355|ref|XP_001916890.1| PREDICTED: similar to Putative metalloprotease C21orf57 [Equus caballus] Length = 164 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYREKNIPTDVLSFPFHENLKAGEIPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I + +++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 93 LGVEYIFQQCKE-NEDYYDILTVTATHGLCHLLGFTHSTEAEWQKMYQKEKQVLEEL 148 >gi|253701857|ref|YP_003023046.1| hypothetical protein GM21_3262 [Geobacter sp. M21] gi|251776707|gb|ACT19288.1| protein of unknown function UPF0054 [Geobacter sp. M21] Length = 132 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 2/111 (1%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 ELS+ I +N +Y G DK TNV+SF + +LGD+V++ + Sbjct: 16 EAELSISIVGDRAIRIINRDYLGRDKATNVISFAMQEGEFGAINPEVLGDVVISVDTAAR 75 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHV--DDKDACVMEGLERSILEDL 162 EA G+ F + L++HG LH+ GYDH + +A ME ER I L Sbjct: 76 EAEEAGEAFLSRFYFLLMHGILHITGYDHERSGEAEAARMEAKEREIFALL 126 >gi|183221474|ref|YP_001839470.1| hypothetical protein LEPBI_I2092 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911561|ref|YP_001963116.1| metal-dependent hydrolase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189039442|sp|B0SB32|RRMF_LEPBA RecName: Full=Probable rRNA maturation factor gi|238687827|sp|B0SSV4|RRMF_LEPBP RecName: Full=Probable rRNA maturation factor gi|167776237|gb|ABZ94538.1| Metal-dependent hydrolase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779896|gb|ABZ98194.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 154 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 2/140 (1%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 W DE + + ++ + +ELS+ + + +N E RG T Sbjct: 11 WNDESNQSEIFSDPVISNCEKILRFLAPEFLHSLELSIYLVNDSLMAEINEERRGKPATT 70 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 +VLSFP ++ +LG++V++ E + +A +G + L++HG LH GYD Sbjct: 71 DVLSFPL-YSEHPPIPVQILGEVVISMETCKKQAMEIGHGLVDEFYRLLVHGILHNFGYD 129 Query: 142 HVD-DKDACVMEGLERSILE 160 H ++DA +M +E L+ Sbjct: 130 HETNEEDALLMRKMEDECLD 149 >gi|303253550|ref|ZP_07339688.1| hypothetical protein APP2_0738 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302647470|gb|EFL77688.1| hypothetical protein APP2_0738 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 409 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 8/121 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN+ +L +L ++ + L + E+++ D Sbjct: 1 MTTPMIDLQIACENSE-----NLPSLEQLTLWVQ-TALAYEAQTEDFPETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 L 126 Sbjct: 113 C 113 >gi|195953789|ref|YP_002122079.1| protein of unknown function UPF0054 [Hydrogenobaculum sp. Y04AAS1] gi|195933401|gb|ACG58101.1| protein of unknown function UPF0054 [Hydrogenobaculum sp. Y04AAS1] Length = 144 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 9/146 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKG-----YFVKENIVELSLVFTDSHRIETLNFEYRGID 78 ++I+L+T ++ K + L+ K F L + T+ I+ LN YR D Sbjct: 2 NKINLKTYKKLEIPKELKYLLKKRASYTLKFFGFKNSMLDIYITNDEEIKHLNSAYRQKD 61 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 KPT+VLSF + LG+IV++Y+ +A G + L L++HG +HL+ Sbjct: 62 KPTDVLSFNINENVG---NVYYLGEIVISYDTALKQAIEYGVSLDQELTRLLVHGIVHLM 118 Query: 139 GYDHVDD-KDACVMEGLERSILEDLG 163 G+DH +D + + S L Sbjct: 119 GHDHETSLEDEKIFFEKQESALAMFN 144 >gi|190150279|ref|YP_001968804.1| hypothetical protein APP7_1010 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245863|ref|ZP_07527948.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254836|ref|ZP_07536662.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259278|ref|ZP_07541007.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263620|ref|ZP_07545232.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915410|gb|ACE61662.1| hypothetical protein APP7_1010 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306853223|gb|EFM85443.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862207|gb|EFM94175.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866645|gb|EFM98504.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871043|gb|EFN02775.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 409 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 8/121 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN+ +L +L ++ + L + E+++ D Sbjct: 1 MTTPMIDLQIACENSE-----NLPSLEQLTLWVQ-TALAYEAQTEDFPETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 L 126 Sbjct: 113 C 113 >gi|32035698|ref|ZP_00135586.1| COG1444: Predicted P-loop ATPase fused to an acetyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208433|ref|YP_001053658.1| hypothetical protein APL_0957 [Actinobacillus pleuropneumoniae L20] gi|126097225|gb|ABN74053.1| hypothetical protein APL_0957 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 409 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 8/121 (6%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 + P +DLQIA EN+ +L +L ++ + L + E+++ D Sbjct: 1 MTTPMIDLQIACENSE-----NLPSLEQLTLWVQ-TALAYEAQTEDFPETEMTIRIVDEA 54 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H Sbjct: 55 ESHELNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESH 112 Query: 126 L 126 Sbjct: 113 C 113 >gi|224054065|ref|XP_002192222.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 164 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 +AV L + + + ++ LV + ++ LN YR +PT+VLSFP + Sbjct: 16 RAPLRRAVCALRAA---LGASRFDVGLVCASNALMQRLNGAYRHCPEPTDVLSFPFHQVA 72 Query: 93 SDGCSSL------MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + LGDI L E I + G+ F++ L HG HLLGY H Sbjct: 73 AGELPRPCCRGEYNLGDIFLGVEYIHQQCRETGENFDDVLTVTAAHGLCHLLGYRHDTKP 132 Query: 147 DACVMEGLERSILEDLG 163 + M E ILE+L Sbjct: 133 EWEQMYQKEAQILEELN 149 >gi|116626740|ref|YP_828896.1| hypothetical protein Acid_7712 [Candidatus Solibacter usitatus Ellin6076] gi|123124469|sp|Q01P09|RRMF_SOLUE RecName: Full=Probable rRNA maturation factor gi|116229902|gb|ABJ88611.1| protein of unknown function UPF0054 [Candidatus Solibacter usitatus Ellin6076] Length = 147 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 17/141 (12%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 LR FA+ + ++ G + T + LN ++R D T+VL Sbjct: 15 PATLRRPAIERFARRLQKEVADGAPFDT-------LITGDAELRRLNRDFRKKDYATDVL 67 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP+ LGD+ ++ +A G E + L++HG LHLLG+DH Sbjct: 68 SFPS--------GGPGLGDLAISLGRARAQAREFGHTIEQEISILMLHGVLHLLGHDH-- 117 Query: 145 DKDACVMEGLERSILEDLGIN 165 + D M LE+ LG+ Sbjct: 118 EVDRGRMASLEKRWRAKLGLP 138 >gi|466970|gb|AAA17156.1| B1937_F1_21 [Mycobacterium leprae] Length = 140 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG------CSSLMLGDIVLAYEIIEI 113 V D+ + L+ + + PT+V+SFP G MLGDIVL E Sbjct: 2 VLLDTAAMADLHMRWMDLPGPTDVMSFPMDEFEPGGRPDAAEPGPSMLGDIVLCPEFAAQ 61 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +A G + L L IHG LHLLGYDH + + M L+ +LE+ Sbjct: 62 QAAAEGHSLGHELALLTIHGVLHLLGYDHGEPDEEKEMFALQGRLLEEW 110 >gi|134093656|ref|YP_001098731.1| hypothetical protein HEAR0379 [Herminiimonas arsenicoxydans] gi|166232645|sp|A4G265|RRMF_HERAR RecName: Full=Probable rRNA maturation factor gi|133737559|emb|CAL60602.1| putative metal-dependent hydrolase [Herminiimonas arsenicoxydans] Length = 156 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 9/140 (6%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 L + K V + +++L F D+ + LN YRG D TNVL+F Sbjct: 21 LTRPLLRKWVKAALLA-------PAQITLRFVDAAEGQILNRNYRGKDYATNVLTFTYND 73 Query: 91 ASSDGCSSLML--GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + + DI+L ++++ EA K H HL+IHG LH GYDH D++A Sbjct: 74 DDGSDIADDAVTQADIILCTDVLQREAAEQNKTLIFHAAHLVIHGVLHAQGYDHESDEEA 133 Query: 149 CVMEGLERSILEDLGINDPY 168 ME LE L LG +PY Sbjct: 134 EEMEALEIEFLAALGFPNPY 153 >gi|147856469|emb|CAN80775.1| hypothetical protein VITISV_042331 [Vitis vinifera] Length = 532 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 26/141 (18%) Query: 3 VKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFT 62 + + RLD+ IA+ ++ L + + + + G F VELS++ Sbjct: 108 LNIAEMLRLDVPIAM-------KLAFEGLKDSEYKTRDTTISDLGGF---ENVELSVLLC 157 Query: 63 DSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 + I LN E+R D T+ LMLGDIV++ E +A G Sbjct: 158 NDEFIRKLNKEWRDEDHATD----------------LMLGDIVISVETAARQAEERGHTL 201 Query: 123 ENHLVHLIIHGFLHLLGYDHV 143 + + L++HG LHLLG+DH Sbjct: 202 LDEIRILMVHGLLHLLGFDHE 222 >gi|139439607|ref|ZP_01773020.1| Hypothetical protein COLAER_02047 [Collinsella aerofaciens ATCC 25986] gi|133774948|gb|EBA38768.1| Hypothetical protein COLAER_02047 [Collinsella aerofaciens ATCC 25986] Length = 121 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 43/102 (42%), Positives = 62/102 (60%), Gaps = 3/102 (2%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCS---SLMLGDIVLAYEIIEIEANVLGKEFE 123 + LN E+RGID+ T+VLSF A + +L LGDI+LA ++I +A G Sbjct: 1 MHELNHEWRGIDRTTDVLSFECDSAFDEDIPADETLELGDIILAPQVIARQAPGFGNSPA 60 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + +++HG LHLLGYDH++D +A VME E +IL DL + Sbjct: 61 DECRLMLVHGMLHLLGYDHIEDDEAEVMEAREDAILRDLALE 102 >gi|218296577|ref|ZP_03497305.1| protein of unknown function UPF0054 [Thermus aquaticus Y51MC23] gi|218243119|gb|EED09651.1| protein of unknown function UPF0054 [Thermus aquaticus Y51MC23] Length = 139 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 +A+S L+ + + ++++ T RI L + G D+ T+VLSFP + D Sbjct: 18 LRRALSALMEELGVGDKA---VTVILTGDRRIRALKRAWWGEDEATDVLSFP-HYEPGDP 73 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 LGDI ++ + +A G E ++ L HG HLLG+DH ++D ++ Sbjct: 74 FVPPHLGDIWISLDTARRQAEARGAPLEEEVLVLAAHGLWHLLGHDHQKEEDWEGFHRVQ 133 Query: 156 RSIL 159 IL Sbjct: 134 ERIL 137 >gi|313680087|ref|YP_004057826.1| hypothetical protein Ocepr_1196 [Oceanithermus profundus DSM 14977] gi|313152802|gb|ADR36653.1| protein of unknown function UPF0054 [Oceanithermus profundus DSM 14977] Length = 141 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++++ RI L + G D T+VLSFPT + D LGD+ ++ + + +A Sbjct: 37 EVTVILCSDRRIRELKRAHWGEDAATDVLSFPT-YEPGDPFLPPHLGDVWISLDTAQRQA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 G E+ ++ L HG HLLG+DH ++ ++R ILE Sbjct: 96 REQGHALEDEVLTLAAHGLWHLLGHDHTTEEAWRGFRNVQRRILE 140 >gi|257784596|ref|YP_003179813.1| hypothetical protein Apar_0793 [Atopobium parvulum DSM 20469] gi|257473103|gb|ACV51222.1| protein of unknown function UPF0054 [Atopobium parvulum DSM 20469] Length = 169 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 4/128 (3%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 +A NL+ +K +S+ I+ +N E+R + PT+V+S + Sbjct: 23 EADCNLVLSEEGIKRPCA-VSISIVSDEEIQQVNLEWREKNAPTDVISLEVERPDDPDLA 81 Query: 98 S---LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 LGDI+LA + I +A G + +++H LHLLGYDHV D +A VME Sbjct: 82 PGEMCELGDIILAPQFIARQAKEYGTTEADEFRLMLVHAMLHLLGYDHVADDEAEVMEAR 141 Query: 155 ERSILEDL 162 E +++ L Sbjct: 142 EDALVALL 149 >gi|284030364|ref|YP_003380295.1| hypothetical protein Kfla_2422 [Kribbella flavida DSM 17836] gi|283809657|gb|ADB31496.1| protein of unknown function UPF0054 [Kribbella flavida DSM 17836] Length = 158 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++++ E+ + D L L V + ELS+ D + Sbjct: 1 MNVEVNNESGVEIDAHGLMRLSRFVMSS----------LRLHPECELSIKLVDEDTMARY 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLM--LGDIVLAYEIIEIEANVLGKEFEN 124 + E+ + PT+V+S+P + +D + LGDI L + + G Sbjct: 51 HVEFLDLPGPTDVMSWPMDELRPGSDNDDAEPPLGHLGDIALCPTVAAAQGAKAGHGTWA 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLGYDH + + M ++ +LE Sbjct: 111 ELELLTVHGILHLLGYDHAEPAEKAEMWDVQGRLLEAW 148 >gi|296140455|ref|YP_003647698.1| hypothetical protein Tpau_2761 [Tsukamurella paurometabola DSM 20162] gi|296028589|gb|ADG79359.1| protein of unknown function UPF0054 [Tsukamurella paurometabola DSM 20162] Length = 179 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++ A E+ DE L + A + EL+++ D + L Sbjct: 1 MSIEFANESGFDVDEAELVAVAAFAIAAMDVH----------PGAELNMLAVDLDTMADL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLM------LGDIVLAYEIIEIEANVLGKEFEN 124 + ++ + PT+V+SFP + G ++ LGDIVL + +A G + Sbjct: 51 HVKWMDLPGPTDVMSFPMDELTPGGRPDMVDAGPATLGDIVLCPQFAAEQAEAAGHSTAH 110 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L +HG LHLLG+DH + ++ M GL+ SIL + Sbjct: 111 ELNVLTVHGVLHLLGFDHAEPEEEREMFGLQDSILAEY 148 >gi|289433031|ref|YP_003462904.1| hypothetical protein DehalGT_1088 [Dehalococcoides sp. GT] gi|288946751|gb|ADC74448.1| protein of unknown function UPF0054 [Dehalococcoides sp. GT] Length = 160 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 12/147 (8%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + L F K +++ K + EL +V T I+ LN +YR +D+PT+VLSF Sbjct: 10 PFKKLVSAQFLKKIASETLKAQAADPSS-ELGIVITGQEEIKELNCKYRQLDEPTDVLSF 68 Query: 87 ------PTAFASSDGCSSLM-----LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 P + D + LG+++++Y E++A G + L L+IHG L Sbjct: 69 YMLEENPENLTAPDDFPTPPDEATHLGEVIISYPQAELQAGAAGHSVNHELAFLLIHGVL 128 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDL 162 HLLGYDH + VM+ + ++ + Sbjct: 129 HLLGYDHHETAAEAVMKSHQDIAMKHI 155 >gi|195941799|ref|ZP_03087181.1| putative metalloprotease [Borrelia burgdorferi 80a] gi|216264854|ref|ZP_03436846.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|221217391|ref|ZP_03588862.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|224533033|ref|ZP_03673639.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|224533910|ref|ZP_03674495.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225549226|ref|ZP_03770199.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|225549724|ref|ZP_03770689.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|215981327|gb|EEC22134.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|221192669|gb|EEE18885.1| conserved hypothetical protein [Borrelia burgdorferi 72a] gi|224512027|gb|EEF82422.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23] gi|224512913|gb|EEF83279.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a] gi|225369684|gb|EEG99132.1| conserved hypothetical protein [Borrelia burgdorferi 118a] gi|225370084|gb|EEG99524.1| conserved hypothetical protein [Borrelia burgdorferi 94a] gi|312148321|gb|ADQ30980.1| conserved hypothetical protein [Borrelia burgdorferi JD1] Length = 155 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 18/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + F +V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFEHLSVFYD-----FVVSVLNALSISDF------ELSVILCDNAYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+V+++E ++ A E Sbjct: 50 QELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILED 161 L + IHG LHL+GY H D M L+ +IL++ Sbjct: 110 IYEELQRVTIHGILHLMGYKHETNDFQKESMLILQENILKE 150 >gi|218781165|ref|YP_002432483.1| hypothetical protein Dalk_3326 [Desulfatibacillum alkenivorans AK-01] gi|218762549|gb|ACL05015.1| protein of unknown function UPF0054 [Desulfatibacillum alkenivorans AK-01] Length = 127 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 59/107 (55%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELS++ D R+ L+ EY G PTNVL+FP + + ++GD+V+ ++ EA Sbjct: 18 ELSVLIVDGGRMAELHEEYVGKQGPTNVLAFPMTEGPFNEINPEIIGDVVICTDVAAKEA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 G + + L+IHG LHL+G+DH + ++ +M+ E + E Sbjct: 78 EDAGVDLYTRALELLIHGILHLVGHDHAEPEETALMQAKEAELFEQF 124 >gi|312148985|gb|ADQ29056.1| conserved hypothetical protein [Borrelia burgdorferi N40] Length = 155 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 18/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + F +V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLNVFYD--FVVSVLNALSISDF------ELSVILCDNAYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+V+++E ++ A E Sbjct: 50 QELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILED 161 L + IHG LHL+GY H D M L+ +IL++ Sbjct: 110 IYEELQRVTIHGILHLMGYKHETNDFQKESMLILQENILKE 150 >gi|74001576|ref|XP_848242.1| PREDICTED: similar to UPF0054 protein C21orf57 homolog isoform 1 [Canis familiaris] Length = 164 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L L+ D+ ++ LN YRG D+PT+VLSFP LGDIV Sbjct: 33 RDFDLGLLCVDNEGMQRLNRAYRGDDRPTDVLSFPFHENVKAGELPRPRSRDDYNLGDIV 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E + ++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 93 LGVEYVFQRCR-GDADYYDALTVTAAHGLCHLLGFTHSTEAEWRKMYQKEKQVLEEL 148 >gi|113955023|ref|YP_731849.1| hypothetical protein sync_2661 [Synechococcus sp. CC9311] gi|122945509|sp|Q0I6S3|RRMF_SYNS3 RecName: Full=Probable rRNA maturation factor gi|113882374|gb|ABI47332.1| Hypothetical UPF0054 protein [Synechococcus sp. CC9311] Length = 177 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 6/144 (4%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E W E L E + + + + L + D I LN +R Sbjct: 30 EAGDW--ECELSAWIEAL--RQDHGNHCPEVVRTCDSLSLGISLLDDASIAELNLHWRQK 85 Query: 78 DKPTNVLSFPTAFASSDGC--SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 PT+VLSF + L LGDIV++ +A E L L+ HG L Sbjct: 86 PTPTDVLSFAALESEMPMVAGQELELGDIVVSVPTARRQALEQKHGLERELRWLVSHGLL 145 Query: 136 HLLGYDHVDDKDACVMEGLERSIL 159 HLL +DH D+ M + +L Sbjct: 146 HLLSWDHPDEDALAAMLQKQEHLL 169 >gi|154504368|ref|ZP_02041106.1| hypothetical protein RUMGNA_01872 [Ruminococcus gnavus ATCC 29149] gi|153795297|gb|EDN77717.1| hypothetical protein RUMGNA_01872 [Ruminococcus gnavus ATCC 29149] Length = 165 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 17/155 (10%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI L + V V + Y E++L+ T I +N E+R ID+ T+VL Sbjct: 10 EITLPFETKEVADLVVEAAL--EYEGCPYEAEINLLLTTDDEIHRMNEEFRQIDRATDVL 67 Query: 85 SFPTAFASSDGC---------------SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 SFP + G LMLGDIV++ E + +A G + L Sbjct: 68 SFPMLEYETPGDFSFVEEEAEAFNPESGELMLGDIVISKEKVLAQAEAYGHSPKREFAFL 127 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 I H LHL GYDH+++++ VME +R I+E + I Sbjct: 128 IAHSMLHLFGYDHMEEEERLVMEERQREIMEKVQI 162 >gi|15594406|ref|NP_212194.1| putative metalloprotease [Borrelia burgdorferi B31] gi|218249454|ref|YP_002374591.1| hypothetical protein BbuZS7_0061 [Borrelia burgdorferi ZS7] gi|223889176|ref|ZP_03623765.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|226320768|ref|ZP_03796324.1| conserved hypothetical protein [Borrelia burgdorferi 29805] gi|226322028|ref|ZP_03797553.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|6686087|sp|O51087|RRMF_BORBU RecName: Full=Probable rRNA maturation factor gi|226734032|sp|B7J0Z6|RRMF_BORBZ RecName: Full=Probable rRNA maturation factor gi|2687941|gb|AAC66448.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|218164642|gb|ACK74703.1| conserved hypothetical protein [Borrelia burgdorferi ZS7] gi|223885425|gb|EEF56526.1| conserved hypothetical protein [Borrelia burgdorferi 64b] gi|226232618|gb|EEH31372.1| conserved hypothetical protein [Borrelia burgdorferi Bol26] gi|226233823|gb|EEH32548.1| conserved hypothetical protein [Borrelia burgdorferi 29805] Length = 155 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 18/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + F +V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLNVFYD--FVVSVLNALSISDF------ELSVILCDNAYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+V+++E ++ A E Sbjct: 50 QELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINYKIQGDLVISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILED 161 L + IHG LHL+GY H D M L+ +IL++ Sbjct: 110 IYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILKE 150 >gi|224282932|ref|ZP_03646254.1| putative metalloprotease [Bifidobacterium bifidum NCIMB 41171] gi|310287375|ref|YP_003938633.1| hypothetical protein BBIF_0854 [Bifidobacterium bifidum S17] gi|311064216|ref|YP_003970941.1| hypothetical protein BBPR_0823 [Bifidobacterium bifidum PRL2010] gi|313140091|ref|ZP_07802284.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|309251311|gb|ADO53059.1| conserved hypothetical protein [Bifidobacterium bifidum S17] gi|310866535|gb|ADP35904.1| Conserved hypothetical protein in uncharacterized protein family UPF0054 [Bifidobacterium bifidum PRL2010] gi|313132601|gb|EFR50218.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 181 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG---CSSLMLGDIVLAYEIIE 112 +L+++F D I L+ + ++ PT+V+SFP +LGD+V+ + Sbjct: 36 DLTILFVDPDPIAELHERWMSLEGPTDVMSFPMDELRPGDGKTTMEGVLGDLVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV + M GL+R +L Sbjct: 96 QQAAAAGHSTMQEMMLLTIHGILHLLGYDHVTPEQERQMFGLQRQLL 142 >gi|57233865|ref|YP_182081.1| hypothetical protein DET1370 [Dehalococcoides ethenogenes 195] gi|123618332|sp|Q3Z6R8|RRMF_DEHE1 RecName: Full=Probable rRNA maturation factor gi|57224313|gb|AAW39370.1| conserved hypothetical protein TIGR00043 [Dehalococcoides ethenogenes 195] Length = 172 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 12/147 (8%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + L F K +++ K N EL +V T I+ LN +YRG+D+PT+VLSF Sbjct: 22 PFKKLVSTPFLKKIASKTLKAQAADPNS-ELGIVITGQEEIKDLNLKYRGLDEPTDVLSF 80 Query: 87 PTAFASSD-----------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + + ++ LG+++++Y E++A + + L+IHG L Sbjct: 81 YMLEENPENLTAADDFPTPPDENIHLGEVIISYPQAELQATAASHSVSHEIAFLLIHGVL 140 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDL 162 HLLGYDH + VM+ + ++ + Sbjct: 141 HLLGYDHHEVVAEAVMKSHQDIAMKHI 167 >gi|298245008|ref|ZP_06968814.1| protein of unknown function UPF0054 [Ktedonobacter racemifer DSM 44963] gi|297552489|gb|EFH86354.1| protein of unknown function UPF0054 [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 30/181 (16%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P ++L I +E+A I + L V + VS +S + + ++L+ TD I Sbjct: 36 PLIELYITIEDAQQSAAIE-KALENVNLDEVVSQTLSAVNIHEPIM--VTLLVTDDEGIR 92 Query: 69 TLNFEYRGIDKPTNVLSFP-----------------------TAFASSDGCSSL----ML 101 +N +YR IDK T+VLSFP + D + L Sbjct: 93 DMNKQYREIDKATDVLSFPLLNEPLVQAPAEQLWPVRESEAGAQESVPDFITPPETVQNL 152 Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 GDIV+++ +E +A L++L+ HG LHL+GYD + M G+++ ++ Sbjct: 153 GDIVMSWPTLERQAQEAKHSTIYELLYLLSHGMLHLVGYDDHTEAGYQAMVGIQQRVMNT 212 Query: 162 L 162 L Sbjct: 213 L 213 >gi|327260856|ref|XP_003215249.1| PREDICTED: rRNA maturation factor homolog isoform 1 [Anolis carolinensis] gi|327260858|ref|XP_003215250.1| PREDICTED: rRNA maturation factor homolog isoform 2 [Anolis carolinensis] Length = 165 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 10/145 (6%) Query: 28 LRTLCEVVFAKAV---SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +R L + + V N+ + +L ++ + I+ LN YR + PT+VL Sbjct: 5 IRNLQRAIPIRRVPLRQNIERLRCILGVQRFDLGVICVSNRHIQQLNRCYRQKNIPTDVL 64 Query: 85 SFPT-------AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 SFP LGDI L E I + +++ N L + HG HL Sbjct: 65 SFPFHENLKAGELPQHFAQDEYNLGDIFLGVEYIYQQCVHYNEDYYNILTVTVAHGLCHL 124 Query: 138 LGYDHVDDKDACVMEGLERSILEDL 162 LGY H D M E IL++L Sbjct: 125 LGYKHSTKADWEEMYKKEAQILQEL 149 >gi|147669820|ref|YP_001214638.1| hypothetical protein DehaBAV1_1181 [Dehalococcoides sp. BAV1] gi|189038619|sp|A5FPW5|RRMF_DEHSB RecName: Full=Probable rRNA maturation factor gi|146270768|gb|ABQ17760.1| protein of unknown function UPF0054 [Dehalococcoides sp. BAV1] Length = 160 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 12/147 (8%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + L F K +++ K + EL +V T I+ LN +YR +D+PT+VLSF Sbjct: 10 PFKKLVSAQFLKKIASETLKAQAADPSS-ELGIVITGQEEIKELNCKYRQLDEPTDVLSF 68 Query: 87 ------PTAFASSDGCSSLM-----LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 P + D + LG+++++Y E++A G + L L+IHG L Sbjct: 69 YMLEENPENLTAPDDFPTPPDEATHLGEVIISYPQAELQAGAAGHSVNHELAFLLIHGVL 128 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDL 162 HLLGYDH + VM+ + ++ + Sbjct: 129 HLLGYDHHETAAEAVMKSHQDIAMKHI 155 >gi|261885819|ref|ZP_06009858.1| putative metalloprotease [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 134 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 7/111 (6%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 E+ LVF + + +N + RG+DK T+VLSFP + +G IV+ ++ + Sbjct: 22 AEVELVFVSNEEMREINRDKRGMDKTTDVLSFPLTY-----VPHFPIGSIVINTDLASSK 76 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 A LG ++ + L HG LH+LG+DH +D M E S++E +G+ Sbjct: 77 ALELGHSTDDEIALLFTHGLLHILGFDHENDD--GEMRRKEISMMEHMGLP 125 >gi|111114881|ref|YP_709499.1| putative metalloprotease [Borrelia afzelii PKo] gi|123341437|sp|Q0SPA5|RRMF_BORAP RecName: Full=Probable rRNA maturation factor gi|110890155|gb|ABH01323.1| conserved hypothetical protein [Borrelia afzelii PKo] Length = 152 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 15/158 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + + + V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLSIFYDFILS--VLNTLSISDF------ELSVILCDNVYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML---GDIVLAYEIIEIEANVLGKEFEN 124 + LN ++R ++PT+VLSF + D + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNEVNEDLVDGINYKIQGDLIISFEYLKFSAQEFNVEIYE 109 Query: 125 HLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILED 161 L + IHG LHL+GY H D M L+ +IL Sbjct: 110 ELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILRK 147 >gi|261337356|ref|ZP_05965240.1| putative metalloprotease [Bifidobacterium gallicum DSM 20093] gi|270277734|gb|EFA23588.1| putative metalloprotease [Bifidobacterium gallicum DSM 20093] Length = 181 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIE 112 +L+++F D I L+ + G+ PT+V+SFP S +LGDIV+ + Sbjct: 36 DLAILFVDPDPIAQLHERWMGLLGPTDVMSFPMDELRPGSTNALSEGILGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDH M GL+R +L Sbjct: 96 QQAAAAGHSAMEEMLLLTIHGVLHLLGYDHRTKDQERQMFGLQRQLL 142 >gi|224534895|ref|ZP_03675464.1| conserved hypothetical protein [Borrelia spielmanii A14S] gi|224513835|gb|EEF84160.1| conserved hypothetical protein [Borrelia spielmanii A14S] Length = 155 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 18/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + + + V N +S F ELS++ D+ I Sbjct: 1 MSKFDLNLLVENIKFE---HLSIFYDFILS--VLNTLSISDF------ELSVILCDNVYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNEDNEVNEGLVDGINYKIQGDLIISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILED 161 L + IHG LHL+GY H D M L+ +IL Sbjct: 110 IYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILRK 150 >gi|216263745|ref|ZP_03435739.1| conserved hypothetical protein [Borrelia afzelii ACA-1] gi|215979789|gb|EEC20611.1| conserved hypothetical protein [Borrelia afzelii ACA-1] Length = 152 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 15/158 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + + + V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLGIFYDFILS--VLNTLSISDF------ELSVILCDNVYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML---GDIVLAYEIIEIEANVLGKEFEN 124 + LN ++R ++PT+VLSF + D + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNEVNEDLVDGINYKIQGDLIISFEYLKFSAQEFNVEIYE 109 Query: 125 HLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILED 161 L + IHG LHL+GY H D M L+ +IL Sbjct: 110 ELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILRK 147 >gi|297566635|ref|YP_003685607.1| hypothetical protein Mesil_2231 [Meiothermus silvanus DSM 9946] gi|296851084|gb|ADH64099.1| protein of unknown function UPF0054 [Meiothermus silvanus DSM 9946] Length = 149 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 8/136 (5%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 LR+ + K ++ L G+ +++V TD I L E+ G D PT+ Sbjct: 19 PIPARLRSRLKRSLGKLMAELGYPGHA-------VTVVLTDDPEIRALKLEHWGEDTPTD 71 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 VLSFPT F D LGDIV++ + + +A G E + L H HLLG+DH Sbjct: 72 VLSFPT-FEPGDPFVPPHLGDIVISLDTAKHQAEEHGHTLETEALILAAHSLWHLLGHDH 130 Query: 143 VDDKDACVMEGLERSI 158 + + ++ I Sbjct: 131 TTEAEWAHFHHVQALI 146 >gi|86609356|ref|YP_478118.1| hypothetical protein CYB_1900 [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501846|sp|Q2JKD4|RRMF_SYNJB RecName: Full=Probable rRNA maturation factor gi|86557898|gb|ABD02855.1| conserved hypothetical protein TIGR00043 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 163 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 7/120 (5%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-- 88 + E + + + + ELSL T I LN E+R +D+PT+VL+F Sbjct: 17 IEEATWRHWFEIWLKE--LGVQEPCELSLCLTSDEHIRQLNREFRHLDEPTDVLAFAAQE 74 Query: 89 ---AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F D +LGDIV++ +A G L L HG LHLLG+DH D+ Sbjct: 75 MLAPFGIQDITGVRLLGDIVISVPTARAQAKAQGHRLSQELAWLASHGLLHLLGWDHPDE 134 >gi|304373107|ref|YP_003856316.1| Putative metalloprotease [Mycoplasma hyorhinis HUB-1] gi|304309298|gb|ADM21778.1| Putative metalloprotease [Mycoplasma hyorhinis HUB-1] gi|330723268|gb|AEC45638.1| Putative metalloprotease [Mycoplasma hyorhinis MCLD] Length = 150 Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 2/127 (1%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-TAFASSDGCSS 98 + N+I K + + L D ++ F+Y+G D+ T++LSFP S+ Sbjct: 24 ILNIIEKEE-KFQKPLSLDFTLIDDEQMRKYYFQYKGKDRTTDILSFPFVNSFSTSFMKE 82 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 LG+I+++Y+ I+ +A G +L HG HLLGYDH+ ++ M I Sbjct: 83 KFLGEILISYQKIQQQAKEYGHSVTREFCYLFTHGVYHLLGYDHISLEEEKQMNKKVDKI 142 Query: 159 LEDLGIN 165 ++ L I Sbjct: 143 MKLLQIE 149 >gi|225551912|ref|ZP_03772852.1| conserved hypothetical protein [Borrelia sp. SV1] gi|225370910|gb|EEH00340.1| conserved hypothetical protein [Borrelia sp. SV1] Length = 155 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 18/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + DL + VEN + F +V N +S F ELS++ D+ I Sbjct: 1 MSESDLNLLVENIKFEHLSVFYD-----FIVSVLNTLSISDF------ELSVILCDNAYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+V+++E ++ A E Sbjct: 50 QELNNKFRNKNEPTDVLSFNYNEHNELNEDLVDGINCKIQGDLVISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILED 161 L + IHG LHL+GY H D M L+ +IL++ Sbjct: 110 IYEELQRVTIHGILHLMGYKHETNDFQKEGMLILQENILKE 150 >gi|326333966|ref|ZP_08200196.1| putative metalloprotease [Nocardioidaceae bacterium Broad-1] gi|325948245|gb|EGD40355.1| putative metalloprotease [Nocardioidaceae bacterium Broad-1] Length = 154 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 14/157 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +I E+ D H+ L + + +L + F D I L Sbjct: 1 MSTEIINESEQEIDVEHVAKLARFLLEQ----------LRVHPQADLRIKFGDEATITEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASS----DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 N Y + PT+VLSFP + LGDI++A I + G + Sbjct: 51 NERYFDTEGPTDVLSFPGDELLPGRLDEEPEEGDLGDIIIAPTIAAKQGEAAGHGTVAEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L HG LHLLGYDHVD + M GL+ +L+ G Sbjct: 111 ELLTTHGILHLLGYDHVDPDEHAEMFGLQAKLLKAWG 147 >gi|87300846|ref|ZP_01083688.1| hypothetical protein WH5701_05340 [Synechococcus sp. WH 5701] gi|87284717|gb|EAQ76669.1| hypothetical protein WH5701_05340 [Synechococcus sp. WH 5701] Length = 202 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 60/179 (33%), Gaps = 30/179 (16%) Query: 11 LDLQIAVENALWG----------DEIHLRTLCEVVFAKAVSNLISK-GYFVKENIVELSL 59 LDL + + L D + A + + + ++ L L Sbjct: 8 LDLAFSCDEQLSPVLLKAAGPLADPATAEGPWRDLLAAWLEQMQPELPQALRAPAYSLGL 67 Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-------------------SLM 100 + LN +R PT+VL+F +G L Sbjct: 68 SLVGDGEMAELNESWRSQQGPTDVLAFAAQDEGLEGAPAMPKPPELASDQELPEQGEPLE 127 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDIV++ E +A G L L HG LHLLG+DH DD M + +L Sbjct: 128 LGDIVISLETAARQAEAAGVSLARELRWLASHGLLHLLGWDHPDDARLEAMLRRQDQLL 186 >gi|78777269|ref|YP_393584.1| putative metalloprotease [Sulfurimonas denitrificans DSM 1251] gi|123550289|sp|Q30RN2|RRMF_SULDN RecName: Full=Probable rRNA maturation factor gi|78497809|gb|ABB44349.1| Protein of unknown function UPF0054 [Sulfurimonas denitrificans DSM 1251] Length = 139 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 7/110 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L+ TD + +N +R IDK T+VLSFP LG IV+ +E ++ Sbjct: 28 EIELIVTDKDEMREINSAHRNIDKATDVLSFPYIE-----MPLSPLGSIVICSLHVEEKS 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + L IHG LHLLGYDH + D+ M E I+++ + Sbjct: 83 KEFGHTLNDEFALLFIHGLLHLLGYDH--EVDSGEMREEEARIIKEFNLP 130 >gi|73749054|ref|YP_308293.1| hypothetical protein cbdb_A1322 [Dehalococcoides sp. CBDB1] gi|123620002|sp|Q3ZYT5|RRMF_DEHSC RecName: Full=Probable rRNA maturation factor gi|73660770|emb|CAI83377.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1] Length = 166 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 12/147 (8%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + L F K +++ K + EL +V T I+ LN +YR +D+PT+VLSF Sbjct: 16 PFKKLVSAQFLKKIASETLKAQAADPSS-ELGIVITGQEEIKELNCKYRQLDEPTDVLSF 74 Query: 87 ------PTAFASSDGCSSLM-----LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 P + D + LG+++++Y E++A G + L L+IHG L Sbjct: 75 YMLEENPENLTAPDDFPTPPDEATHLGEVIISYPQAELQAGAAGHSVNHELAFLLIHGVL 134 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDL 162 HLLGYDH + VM+ + ++ + Sbjct: 135 HLLGYDHHETAAEAVMKSHQDIAMKHI 161 >gi|221194510|ref|ZP_03567567.1| putative metalloprotease [Atopobium rimae ATCC 49626] gi|221185414|gb|EEE17804.1| putative metalloprotease [Atopobium rimae ATCC 49626] Length = 169 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC---SSLMLGDIVLAYEIIEI 113 +S+ I T+N +R D T+V+S + + LGDI+LA I+ Sbjct: 41 VSISVVSDEEIRTVNRTWRNADAVTDVISLEVERPNDEDLAPGEPCELGDILLAPAYIKR 100 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDP 167 +A + +++H LHLLGYDH++D++A ME E +++ + ++P Sbjct: 101 QAATYHTTPADEFRLMLVHAMLHLLGYDHLNDEEAECMEAREDALVAMIKTDNP 154 >gi|154148178|ref|YP_001406320.1| putative metalloprotease [Campylobacter hominis ATCC BAA-381] gi|153804187|gb|ABS51194.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 138 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 8/135 (5%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 +CE F + ++++ F+ VEL VF +S ++ LN RGIDK T+VLSFP F Sbjct: 3 ICETEFPQILNDI---NKFLGSYNVEL--VFVNSDEMKELNLTERGIDKTTDVLSFPL-F 56 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + D +G +V+ ++ + +AN LG + + L +HGFLH+LG+DH D Sbjct: 57 SKIDNYGDFPIGSVVINLDLAKRKANELGHNVNDEIALLFMHGFLHILGFDHETDN--GE 114 Query: 151 MEGLERSILEDLGIN 165 M ER I+E+ + Sbjct: 115 MREKEREIIENFKLP 129 >gi|50365081|ref|YP_053506.1| putative metal-dependent hydrolase [Mesoplasma florum L1] gi|59799030|sp|Q6F1K1|RRMF_MESFL RecName: Full=Probable rRNA maturation factor gi|50363637|gb|AAT75622.1| putative metal-dependent hydrolase [Mesoplasma florum L1] Length = 169 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 + + +E L+ AK + N K Y +N + LS+ F DS + +N EYR Sbjct: 3 SIDFINETDLKVKEWEDLAKQIINSGFK-YLKLKNKINLSITFLDSEPAQKINQEYRNHS 61 Query: 79 KPTNVLSFPTAFASSD--GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 +V SFP + + +GDI + E E ++ + + L HGFLH Sbjct: 62 YIPDVTSFPIEMSPQEIKALGYQEIGDIFICIEEAERKSIKYDHSLKEEMGFLFTHGFLH 121 Query: 137 LLGYDHVD-DKDACVMEGLERSILE 160 L+GYDH +KD M ++ IL+ Sbjct: 122 LMGYDHETNEKDEEEMFFIQDEILK 146 >gi|301064609|ref|ZP_07205005.1| translation metalloprotein YbeY [delta proteobacterium NaphS2] gi|300441357|gb|EFK05726.1| translation metalloprotein YbeY [delta proteobacterium NaphS2] Length = 128 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-----MLGDIVLAYEI 110 ELS++FTD + LN +YR + T+VLSF A + MLGD+V++ + Sbjct: 16 ELSILFTDDENMAVLNRQYRQKEGATDVLSFSMQEALDGEDGTPLFETVMLGDVVISVDT 75 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILE 160 +A LG+ FE + L+IHG LHL GYDH +D+ M E +L Sbjct: 76 ALRDAKELGESFEKTVDRLLIHGILHLTGYDHERSQEDSERMMAAEERLLA 126 >gi|261839888|gb|ACX99653.1| hypothetical protein HPKB_1090 [Helicobacter pylori 52] Length = 140 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + LV + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELVLVSDETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++RG D T+VLSFP + LG +V+ + + A LG E+ + L IH Sbjct: 46 DFRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQTNALKLGHSLEDEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 131 >gi|124515714|gb|EAY57223.1| conserved protein of unknown function [Leptospirillum rubarum] Length = 169 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 2/114 (1%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 + E +++ F ++ RI +N EYRG ++ T+VLSF G+I+++ E Sbjct: 30 LGEAQKNVTITFVNNRRIRIVNREYRGKNRSTDVLSFSYPSPPFPDIPFPD-GEILISTE 88 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDL 162 E +A E +V+LIIHG HL G+DH +DA M+ ER I + L Sbjct: 89 KAERQAREQNIPLETEIVNLIIHGLCHLAGHDHETGPEDALRMKHAERKIAKTL 142 >gi|296532214|ref|ZP_06894964.1| possible metal-dependent hydrolase [Roseomonas cervicalis ATCC 49957] gi|296267458|gb|EFH13333.1| possible metal-dependent hydrolase [Roseomonas cervicalis ATCC 49957] Length = 159 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 7/113 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++++ TD ++ LN E+R KPTNVLSFP G LGDI LA ++ EA Sbjct: 51 MTVLLTDDRSVKRLNGEHRNKVKPTNVLSFP-------GEGFGHLGDIALALGVVRREAR 103 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + HL HL+ HG LHL G+DH+ +A ME E I+ L + +P+ Sbjct: 104 AAKRRVAAHLAHLVAHGTLHLGGHDHIQAGEARRMERAEARIMRRLALPNPWR 156 >gi|88606960|ref|YP_505804.1| hypothetical protein APH_1290 [Anaplasma phagocytophilum HZ] gi|123494243|sp|Q2GIJ7|RRMF_ANAPZ RecName: Full=Probable rRNA maturation factor gi|88598023|gb|ABD43493.1| conserved hypothetical protein TIGR00043 [Anaplasma phagocytophilum HZ] Length = 154 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 4/112 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S+V + LN +YR I+KPTNVLSF S + C LG+I L+ + + E+ Sbjct: 43 VSVVLAHDALLLELNHKYRNINKPTNVLSFNYEALSHNCC----LGEIFLSIDRLTYESK 98 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 LG E H H++IHG LH+LGYDH +DA M+ LE +L I +PY Sbjct: 99 TLGVEVHAHFTHMLIHGVLHILGYDHEVPEDAQEMQALEIDLLSKRSIENPY 150 >gi|255525314|ref|ZP_05392254.1| protein of unknown function UPF0054 [Clostridium carboxidivorans P7] gi|255510986|gb|EET87286.1| protein of unknown function UPF0054 [Clostridium carboxidivorans P7] Length = 120 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 17/118 (14%) Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFAS-----------------SDGCSSLMLGDIVLA 107 +I+ +N E R IDK T+VLSFP SL+LGDIVL+ Sbjct: 2 KKIKEINKENRNIDKVTDVLSFPMLDYEKGKVFKDTYKDFNFSHVDLDEGSLVLGDIVLS 61 Query: 108 YEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + ++ F +V+L IH LHLLGYDH+++ + +M E ILE + Sbjct: 62 LEKAKEQSLEFNHSFIREVVYLTIHSVLHLLGYDHMEEDEKSIMRKREEQILEKFHLT 119 >gi|332297629|ref|YP_004439551.1| metalloprotease ybeY [Treponema brennaborense DSM 12168] gi|332180732|gb|AEE16420.1| metalloprotease ybeY [Treponema brennaborense DSM 12168] Length = 162 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA--SSDGCSSLMLGDIVLAYEIIEI 113 E+S++F I LN +YR I PT+VLSF DG GDIV++ + +E Sbjct: 42 EVSVLFCADPFIAELNLQYRSIKGPTDVLSFELGDEYIDEDGVPWTSAGDIVVSIDTLER 101 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 A G + L L+IHG LHL GYDH D+ M L+ SIL D Sbjct: 102 NALEFGVPVDQELKRLLIHGVLHLSGYDHSDNSPEQEMLVLQESILPDF 150 >gi|123965446|ref|YP_001010527.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9515] gi|123199812|gb|ABM71420.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9515] Length = 135 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 2/134 (1%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-- 88 +C + + N + + I LSL +++ I ++N ++ PT+VLSFP Sbjct: 1 MCWINIILSEKNTSFPNFIFDKKIFSLSLQIINNNEISSINQKWMDKSGPTDVLSFPMIS 60 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 ++ + + LGD+ ++ E+ ++ + ++ L HGFLHLLG++H DD + Sbjct: 61 DEDTTKNLNFIELGDLFISLEMAFQQSLEFDHSIKKEMLWLASHGFLHLLGWEHNDDNEL 120 Query: 149 CVMEGLERSILEDL 162 M + ++ L Sbjct: 121 DNMLNFQEYLISKL 134 >gi|301604850|ref|XP_002932054.1| PREDICTED: putative metalloprotease C21orf57-like [Xenopus (Silurana) tropicalis] Length = 165 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-------LG 102 +K +L ++ + RI +N YRG D T+VLSFP + + LG Sbjct: 30 LKVRNFDLGIICVSNARIRHINRVYRGQDSVTDVLSFPFHEDLNPSLLPIPASSDEYNLG 89 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI L E I + +++ + L +HG HLLG+ H + + M E IL+++ Sbjct: 90 DIYLGVEFIYQQCQKTQEDYSSILTICAVHGLCHLLGHQHNNPEQWKQMLEKETEILKEI 149 Query: 163 G 163 Sbjct: 150 N 150 >gi|158334602|ref|YP_001515774.1| hypothetical protein AM1_1432 [Acaryochloris marina MBIC11017] gi|189038694|sp|B0C7R9|RRMF_ACAM1 RecName: Full=Probable rRNA maturation factor gi|158304843|gb|ABW26460.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 176 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 7/149 (4%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 VEN L + F +L ELSL+ TD I+ LN YR Sbjct: 21 VENVLKQAHQITAVTWQSWFQHWFEHLQPS--ISPIQTYELSLLLTDDAAIQNLNATYRH 78 Query: 77 IDKPTNVLSFPTAFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +D+PT+VL+F T + + LGDI+++ E +A L L Sbjct: 79 LDRPTDVLAFATLDLTEQPTDLWSEMPVELGDIIISVETAAQQAQEQQHPLPQELAWLAT 138 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILE 160 HG LHLLG+DH + M ++ ++ Sbjct: 139 HGLLHLLGWDHPTPERLQDMLAQQQLLIN 167 >gi|317177908|dbj|BAJ55697.1| putative metalloprotease [Helicobacter pylori F16] Length = 140 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 14/134 (10%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 + + + ++N+++ + LV + +N ++RG D T+VLSFP Sbjct: 12 SDFLLLEKIANVLAPTQI-------IELVLVSDETMREINRDFRGCDYATDVLSFPL--- 61 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + LG +V+ + + A LG EN + L IHG LHLLGYDH +KD Sbjct: 62 --EAIPHTPLGSVVINMPLAQTNALKLGHSLENEIALLFIHGVLHLLGYDH--EKDKGEQ 117 Query: 152 EGLERSILEDLGIN 165 E +++ + Sbjct: 118 RQKESELIKAFNLP 131 >gi|206895766|ref|YP_002246845.1| putative metalloprotease [Coprothermobacter proteolyticus DSM 5265] gi|206738383|gb|ACI17461.1| putative metalloprotease [Coprothermobacter proteolyticus DSM 5265] Length = 148 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 8/110 (7%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++S+ F + I LN +YR ++PT+VLSF LG+I++ + +A Sbjct: 35 DVSVYFCNERTIIDLNTQYRFNEEPTDVLSF--------TGEGDFLGEIIICVPVALRQA 86 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G +++ LI+H FLHLLGYD ++ M ++ +L++LG Sbjct: 87 EESGVDWQVEFAMLIVHSFLHLLGYDDETEEGFAEMVEVQNKLLKELGYE 136 >gi|160880741|ref|YP_001559709.1| hypothetical protein Cphy_2609 [Clostridium phytofermentans ISDg] gi|189039831|sp|A9KMV9|RRMF_CLOPH RecName: Full=Probable rRNA maturation factor gi|160429407|gb|ABX42970.1| protein of unknown function UPF0054 [Clostridium phytofermentans ISDg] Length = 165 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 18/157 (11%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E++ EV+ + + + Y E+++V T++ I+ +N EYR ID PT+VL Sbjct: 10 EVNFDFNEEVLIKEVIEAALD--YEECPYETEINVVLTNNEEIKEINKEYREIDAPTDVL 67 Query: 85 SFPTAFASSD----------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 SFP + LMLGDI+++ + + +A G + L Sbjct: 68 SFPMVEFNEPSDFEHVEEEQEDCFHPDSGELMLGDIIVSVDKVFSQAKEFGHSEKRELGF 127 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LI H LHL GYDH+++++ VME +R+IL+ + ++ Sbjct: 128 LIAHSMLHLCGYDHMEEEEREVMEERQRAILDRIHLS 164 >gi|262277763|ref|ZP_06055556.1| conserved hypothetical protein [alpha proteobacterium HIMB114] gi|262224866|gb|EEY75325.1| conserved hypothetical protein [alpha proteobacterium HIMB114] Length = 150 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 91/154 (59%), Gaps = 13/154 (8%) Query: 12 DLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + I+ ++ +W D ++ + + K++ +S+ F+ +N +E+S++ T++ ++ +L Sbjct: 3 KIHISCDSKIWLKDSTNVEKKIKNILKKSI---MSEKKFLSKN-IEISVLLTNTKKMTSL 58 Query: 71 NFEYRGIDKPTNVLSFPTA----FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 N++YR K T++LSFP+ F ++ LGD+ L++ I+ + FE +L Sbjct: 59 NYKYRNKKKDTDILSFPSEKPNFFKKKLKQKNIYLGDLALSFNYIKKQGIE----FEEYL 114 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 +++HGFLHL+GYDH ++K+ ME ++ IL+ Sbjct: 115 KKMLVHGFLHLIGYDHDNEKNFLKMEKIQNKILK 148 >gi|206602218|gb|EDZ38700.1| Conserved protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 169 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E H + FA ++ ++ + +++ F ++ RI +N EYRG ++ T+VL Sbjct: 6 ENHQKKFAVDAFALSLLANEAQKTLGQSKK-NVTITFVNNRRIRIVNREYRGKNRSTDVL 64 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF G+I+++ E E +A E +++LIIHG HL G+DH Sbjct: 65 SFSYPSPPFPDIPFPD-GEILISTEKAERQAREQNISLETEIINLIIHGLCHLAGHDHET 123 Query: 145 -DKDACVMEGLERSILEDL 162 +D+ M+ +ER I L Sbjct: 124 GPEDSLRMKSVERKIANAL 142 >gi|33860742|ref|NP_892303.1| hypothetical protein PMM0182 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|46577388|sp|Q7V3A1|RRMF_PROMP RecName: Full=Probable rRNA maturation factor gi|33633684|emb|CAE18641.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 180 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 6/150 (4%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I E+ W + + LC + + + + + LSL + + I ++N ++ Sbjct: 34 IIFESGFWEEVL----LCWIKIILDEKDTSFPNFILYKKSFSLSLQIINDNEISSINQKW 89 Query: 75 RGIDKPTNVLSFP--TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 T+VLSFP + ++ + + LGD+ ++ E ++ + ++ L H Sbjct: 90 MNKSGSTDVLSFPIISDEDTTKDLNFIELGDLFISLETAFKQSLEFNHSIKKEMLWLASH 149 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDL 162 G LHLLG++H DD + M + ++ L Sbjct: 150 GLLHLLGWEHNDDYELDNMLNFQEYLISKL 179 >gi|242054369|ref|XP_002456330.1| hypothetical protein SORBIDRAFT_03g034080 [Sorghum bicolor] gi|241928305|gb|EES01450.1| hypothetical protein SORBIDRAFT_03g034080 [Sorghum bicolor] Length = 632 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 4/126 (3%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N +I L L + ++ +++ G K + VE+S++ + + I+ LN E+RG + Sbjct: 177 NVPMAMKIALDGLLDSSYSTRDTSISDVG---KYDKVEVSVLLCNGNFIQDLNKEWRGEN 233 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 + T++LS D LMLGDIV++ E +A G + + L++ G LHLL Sbjct: 234 RTTDMLSMSQYIPDLD-VPILMLGDIVISVEAAARQAEEKGVTLLDEVRVLVVRGILHLL 292 Query: 139 GYDHVD 144 G+ H Sbjct: 293 GFQHES 298 >gi|217034240|ref|ZP_03439658.1| hypothetical protein HP9810_2g19 [Helicobacter pylori 98-10] gi|216943300|gb|EEC22762.1| hypothetical protein HP9810_2g19 [Helicobacter pylori 98-10] Length = 142 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + +L D + L + V+ + + LV + +N Sbjct: 2 LEIDNQTSLESDFLLLEKIANVLAPTQI----------------IELVLVSDKTMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++RG D T+VLSFP + S LG +V+ + + A LG E+ + L IH Sbjct: 46 DFRGCDYATDVLSFPL-----EAISHTPLGSVVINMPLAQTNALKLGHSLEDEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 131 >gi|270308535|ref|YP_003330593.1| hypothetical protein DhcVS_1151 [Dehalococcoides sp. VS] gi|270154427|gb|ACZ62265.1| hypothetical protein DhcVS_1151 [Dehalococcoides sp. VS] Length = 160 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + L F K +++ K N EL +V T I+ LNF+YR +D+PT+VLSF Sbjct: 10 PFKKLVSSQFLKKIASETLKAQAADPNS-ELGIVITGQEEIKDLNFKYRELDEPTDVLSF 68 Query: 87 PTAFASSD-----------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 + + ++ LG+++++Y EI+A+ G + L+IHG L Sbjct: 69 YMLEENPENLTAPDDFPTPPDENIHLGEVIISYPQAEIQASAAGHSVNYEIAFLLIHGVL 128 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDL 162 HLLGYDH + VM+ + ++ + Sbjct: 129 HLLGYDHHEPVSEAVMKSHQDIAMKHI 155 >gi|224531809|ref|ZP_03672441.1| conserved hypothetical protein [Borrelia valaisiana VS116] gi|224511274|gb|EEF81680.1| conserved hypothetical protein [Borrelia valaisiana VS116] Length = 155 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 18/161 (11%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + ++S + + ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFEHLSVFYDF-----------ILSVLNALSISDFELSVILCDNIYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGKE 121 + LN ++R ++PT+VLSF + DG + + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNEHNELTGDLVDGINYKIQGDLIISFEYLKFSAQEFNVE 109 Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACV-MEGLERSILED 161 L + IHG LHL+GY H + M L+ +IL Sbjct: 110 IYEELQRVTIHGILHLMGYKHETNDFKKEGMLILQENILRK 150 >gi|184200942|ref|YP_001855149.1| hypothetical protein KRH_12960 [Kocuria rhizophila DC2201] gi|183581172|dbj|BAG29643.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 168 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 9/158 (5%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKEN-----IVELSLVFTDSHRIETLNFEYRG 76 WG L L + A L + E E+S+ D R+ L+ ++ Sbjct: 9 WGGPEELVQLPDAYRAVDTEQLSALVALAFERWHLHPDTEVSIAVVDEERMTQLHEQWLD 68 Query: 77 IDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 + T+V+SFP + + S +LGD+VL + +A G ++ L L H Sbjct: 69 LPGATDVMSFPMDELREGTPERPSLGVLGDVVLCPPVAARQAAAAGHSTQDELCLLTAHS 128 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILED-LGINDPYEV 170 LHLLG+DH ++ + M +R +LE+ LG + P E Sbjct: 129 LLHLLGHDHAEEHERARMFAAQRGLLEEFLGRDAPVET 166 >gi|317180891|dbj|BAJ58677.1| putative metalloprotease [Helicobacter pylori F32] Length = 140 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + LV + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELVLVSDETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++RG D T+VLSFP + LG +V+ + + A LG E+ + L IH Sbjct: 46 DFRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQENALKLGHRLEDEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 131 >gi|226227119|ref|YP_002761225.1| hypothetical protein GAU_1713 [Gemmatimonas aurantiaca T-27] gi|226090310|dbj|BAH38755.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 167 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 15/159 (9%) Query: 7 NLPRLD-LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 ++P+ D +AVE + L E+ + +++ LS+ F S Sbjct: 13 SVPKTDPRAVAVECDGVRIPVAAARLAELSRQVLRAGKVARAM--------LSITFVTSR 64 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 + TLN ++ G PT+V++F + ++GDI + ++ +A G Sbjct: 65 AMATLNRQHLGHTGPTDVITFAL----GNAPDGTVIGDIYICPDVARRQAREHGVGIREE 120 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACV--MEGLERSILEDL 162 L L++HG LH G++H +D M + ++E Sbjct: 121 LARLVVHGTLHASGWEHPEDDSRTTSPMWRRQEQLIERF 159 >gi|226492765|ref|NP_001146569.1| hypothetical protein LOC100280165 [Zea mays] gi|219887855|gb|ACL54302.1| unknown [Zea mays] Length = 313 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 4/126 (3%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N +I L L + ++ +++ G K + VE+S++ + + I+ LN E+R +D Sbjct: 144 NVPMAMKIALDGLLDSSYSTRDTSISDVG---KYDKVEVSVLLCNDNFIQDLNKEWRDVD 200 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 T++LS D LMLGDIV++ E E +A G + + L++ G LHLL Sbjct: 201 CATDILSMSQYIPDLD-VPILMLGDIVISVEAAERQAGEKGVTLLDEVRVLVVRGILHLL 259 Query: 139 GYDHVD 144 G+ H Sbjct: 260 GFQHES 265 >gi|288928685|ref|ZP_06422531.1| metalloprotease [Prevotella sp. oral taxon 317 str. F0108] gi|288329669|gb|EFC68254.1| metalloprotease [Prevotella sp. oral taxon 317 str. F0108] Length = 140 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 9/138 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D + + + + + + + E+ +F + +I +N EY G D T+ Sbjct: 6 ADGVKMPKIKRKDTTAWIKAV---AQSYGKKVGEVGYMFVNDEKILEINNEYLGHDYYTD 62 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 V++F ++ GDIV++ + + A + K FE+ L +IIHG LHL G + Sbjct: 63 VITFDYDEDD------VVNGDIVISLDTVRTNAELFDKAFEDELYRVIIHGILHLCGLND 116 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E LE Sbjct: 117 KGPGEREIMEKAENKALE 134 >gi|124024428|ref|YP_001018735.1| metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9303] gi|123964714|gb|ABM79470.1| Predicted metal-dependent hydrolase [Prochlorococcus marinus str. MIT 9303] Length = 187 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 L E V + L ++ L L TD I LN +R + T+VLSF Sbjct: 46 DLTAWIESV--RRDPTLTCPEIVRLSPMLSLGLQLTDDATITELNHAWRQRSETTDVLSF 103 Query: 87 PTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 P S + + LGDIV++ + + +A E L L+ HG LHLLG+DH Sbjct: 104 PALDNSLVLPTDTCVELGDIVVSVQTAQRQAKQHSHELGLELRWLVSHGLLHLLGWDHPT 163 Query: 145 DKDACVMEGLERSIL 159 D+ M + +L Sbjct: 164 DQSLKTMLSYQEQLL 178 >gi|317178539|dbj|BAJ56327.1| putative metalloprotease [Helicobacter pylori F30] Length = 142 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 14/134 (10%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 + + + ++N+++ + LV + +N ++RG D T+VLSFP Sbjct: 12 SDFLLLEKIANVLAPTQI-------IELVLVSDKTMREINRDFRGCDYATDVLSFPL--- 61 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + LG +V+ + + A LG E+ + L IHG LHLLGYDH +KD Sbjct: 62 --EAIPHTPLGSVVINMPLAQTNALKLGHRLEDEIALLFIHGVLHLLGYDH--EKDKGEQ 117 Query: 152 EGLERSILEDLGIN 165 E +++ + Sbjct: 118 RQKESELIKAFNLP 131 >gi|283955565|ref|ZP_06373060.1| hypothetical protein C1336_000020094 [Campylobacter jejuni subsp. jejuni 1336] gi|283793026|gb|EFC31800.1| hypothetical protein C1336_000020094 [Campylobacter jejuni subsp. jejuni 1336] Length = 134 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L S F+ VEL VF DS ++ +N E R DK T+VLSFP SL LG Sbjct: 11 LESIASFLSPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLENID----ESLPLG 64 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ ++E Sbjct: 65 SVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEKELIEYF 122 Query: 163 GIN 165 + Sbjct: 123 NLP 125 >gi|225629632|ref|ZP_03787634.1| conserved hypothetical protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591515|gb|EEH12553.1| conserved hypothetical protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 97 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 4/97 (4%) Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN ++R +DKPTNVLSFP S++ LGDI ++ + I+ E++ H+ H Sbjct: 1 QLNLKFREMDKPTNVLSFPYEQWSNESD----LGDIAISIDSIKRESHEYYIPILAHIAH 56 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +++HG HLLGYDH + +M+ LER IL LG N Sbjct: 57 MLVHGLRHLLGYDHPKKDEEIIMKNLEREILASLGYN 93 >gi|299768716|ref|YP_003730742.1| metal-dependent hydrolase [Acinetobacter sp. DR1] gi|298698804|gb|ADI89369.1| metal-dependent hydrolase [Acinetobacter sp. DR1] Length = 160 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D + L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLR--HVGYKEDCEIGVACVDLAESQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH D+DA MEG+E IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEMEGIEVEILAKLNIENPYQ 157 >gi|229817682|ref|ZP_04447964.1| hypothetical protein BIFANG_02953 [Bifidobacterium angulatum DSM 20098] gi|229785471|gb|EEP21585.1| hypothetical protein BIFANG_02953 [Bifidobacterium angulatum DSM 20098] Length = 181 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM---LGDIVLAYEIIE 112 +L+++F D I ++ + ++ PT+V+SFP S++M LGDIV+ + Sbjct: 36 DLTILFVDPDPIAQMHMHWMNLEGPTDVMSFPMDELRPGNGSTVMEGVLGDIVICPWVAA 95 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 +A G ++ L IHG LHLLGYDHV+ + M GL+R +L Sbjct: 96 QQAAAAGHGVLQEMLLLTIHGILHLLGYDHVNAEQERQMFGLQRQLL 142 >gi|300727523|ref|ZP_07060914.1| conserved hypothetical protein [Prevotella bryantii B14] gi|299775226|gb|EFI71827.1| conserved hypothetical protein [Prevotella bryantii B14] Length = 145 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + + ++ +F D RI N +Y G D T+V Sbjct: 7 DGVKMPKIKKRETNAWIKAVAADH---GKKVGDIGYMFVDDERILECNRQYLGHDYYTDV 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + +++ GDIV++ + I A GK +E+ L +IIHG LHL G + Sbjct: 64 ITFDYDDDYEE--ENIIGGDIVISLDTIRTNAEKFGKTYEDELYRVIIHGILHLCGINDK 121 Query: 144 DDKDACVMEGLERSILEDL 162 + +ME E L+ L Sbjct: 122 GPGEREIMEAHEDKALKML 140 >gi|147899075|ref|NP_001087112.1| ybeY metallopeptidase (putative) [Xenopus laevis] gi|50604012|gb|AAH78000.1| MGC82413 protein [Xenopus laevis] Length = 165 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 7/121 (5%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-------LG 102 +K +L ++ ++ RI+ +N YRG D T+VLSFP + + LG Sbjct: 30 LKVKNFDLGIICVNNARIQHINRVYRGQDSVTDVLSFPFHEDLNPSLLPIPATPDEYNLG 89 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DI L I + +++ + L +HG HLLG+ H + + M E IL ++ Sbjct: 90 DIYLGVAFIYEQCQKTQEDYRSILTITAVHGLCHLLGHKHNNPEKWKQMFEKETEILNEI 149 Query: 163 G 163 Sbjct: 150 N 150 >gi|308273339|emb|CBX29942.1| Putative metalloprotease GSU2284 [uncultured Desulfobacterium sp.] Length = 173 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 9/163 (5%) Query: 3 VKKVNLPRLDLQIAVENALWG----DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELS 58 + +N+P+ Q A+E G + + + ++ KA +++ + ELS Sbjct: 5 ITALNIPKQQFQ-ALEKGKMGVLINNSQNKLRIRKIQVRKAAQAILNA---LDCPKGELS 60 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ D I LN +Y P NV+SFP + +LGD+V++ E + E N L Sbjct: 61 ILIEDDDGITGLNEKYLQRKGPANVISFPLRDVNFPEIEHDLLGDVVISAETTQREGNSL 120 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILE 160 G F+ L+IHG LHL GYDH +++A ME +L+ Sbjct: 121 GTGFDKRFAELLIHGILHLFGYDHEKSEQEADEMEIKASKLLK 163 >gi|87310535|ref|ZP_01092664.1| hypothetical protein DSM3645_07710 [Blastopirellula marina DSM 3645] gi|87286756|gb|EAQ78661.1| hypothetical protein DSM3645_07710 [Blastopirellula marina DSM 3645] Length = 165 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 6/151 (3%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKE-NIVELSLVFTDSHRIETLNFEYRG 76 + EI RT +AV I+ + + E+S+ D I +N + Sbjct: 3 DEPDEAVEITRRTQYAAPTDEAVRQAIAAVFAGESIEAYEVSVALVDDAEIHEVNRRFLQ 62 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 D PT+V++F + L+ G+IV++ + EA ++ + +IHG LH Sbjct: 63 HDYPTDVVTFNLSADDD-----LLEGEIVISCQYAAAEAEKYQWPAKHETLLYVIHGALH 117 Query: 137 LLGYDHVDDKDACVMEGLERSILEDLGINDP 167 L+GYD +D+D M LER LE +G+ P Sbjct: 118 LVGYDDHEDEDRLTMRRLERVYLEQVGLEPP 148 >gi|301767368|ref|XP_002919099.1| PREDICTED: putative metalloprotease C21orf57-like [Ailuropoda melanoleuca] Length = 164 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRMYREKNIPTDVLSFPFHENIKAGELPQPDFQDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I + +++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 93 LGVEYIFQQCR-GHEDYYDILTVTATHGLCHLLGFTHSTEAEWQKMYQKEKQVLEEL 148 >gi|237751248|ref|ZP_04581728.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229372614|gb|EEO23005.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 200 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS-SLMLGDIVLAYEIIEIEA 115 + L+F DS ++ LN +Y D PT+VLSFP + LG I++ + +A Sbjct: 80 IELIFVDSESMQELNKQYMAKDYPTDVLSFPLEIQDIESSDMPQCLGSIIINIYEVCDKA 139 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 + L IH FLHLLG+DH D +E++I+E LG+ D Sbjct: 140 ALYKHNPYAEFSLLFIHAFLHLLGFDHECDNGEQ--RAVEQAIIESLGLPD 188 >gi|116749595|ref|YP_846282.1| hypothetical protein Sfum_2165 [Syntrophobacter fumaroxidans MPOB] gi|116698659|gb|ABK17847.1| protein of unknown function UPF0054 [Syntrophobacter fumaroxidans MPOB] Length = 122 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 1/108 (0%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S++ D + LN YR D T+VLSFP +LGD+V+ + + Sbjct: 1 MSILIVDDEEMAGLNSTYRRKDTSTDVLSFPMREGEFGDVCEEVLGDVVICAPMAKRMGE 60 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLG 163 + G F++ + L++HG LHL+G+DH +A M +L+ LG Sbjct: 61 LHGASFQSVMDLLLVHGILHLVGHDHEQGRGEAARMADKTMELLKMLG 108 >gi|121613427|ref|YP_999845.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni 81-176] gi|167004816|ref|ZP_02270574.1| hypothetical protein Cjejjejuni_00700 [Campylobacter jejuni subsp. jejuni 81-176] gi|145572759|sp|A1VXK4|RRMF_CAMJJ RecName: Full=Probable rRNA maturation factor gi|87250280|gb|EAQ73238.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 81-176] Length = 134 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L S F+ VEL VF DS ++ +N E R DK T+VLSFP SL LG Sbjct: 11 LESIASFLGPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLENID----ESLPLG 64 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ ++E Sbjct: 65 SVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEKELIEYF 122 Query: 163 GIN 165 + Sbjct: 123 NLP 125 >gi|116515199|ref|YP_802828.1| YbeY [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285405|sp|Q057G4|RRMF_BUCCC RecName: Full=Probable rRNA maturation factor gi|116257053|gb|ABJ90735.1| predicted metal-dependent hydrolase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 156 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 15/169 (8%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLV 60 M++KK NL ++D+Q + ++ F K + K +E+++ Sbjct: 1 MNIKK-NLMKIDIQNVCKKNIF-------------FPKKKYFFLWLKNIFKNKKIEITIR 46 Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL-MLGDIVLAYEIIEIEANVLG 119 D ++ LN +Y+ + TNVLSF + + L +GDI+L I EAN+L Sbjct: 47 IVDMLEMKFLNKKYKKKNSLTNVLSFQSPDSIKIKHRFLNYIGDIILCAPYINKEANILK 106 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K+ H+ IH LHLL Y H D K M+ E I++ LG N+PY Sbjct: 107 KKKIELWAHMTIHSTLHLLHYSHKDSKSKKNMQKTEIYIMKKLGYNNPY 155 >gi|297380337|gb|ADI35224.1| conserved hypothetical protein [Helicobacter pylori v225d] Length = 140 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 12/141 (8%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI +T E F L+ K V + LV + +N + RG D T+VL Sbjct: 3 EIDSQTPLESDFL-----LLEKIANVLAPTQTIELVLVSDETMREINRDLRGCDYATDVL 57 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SFP + LG +V+ + + A LG E + L IHG LHLLGYDH Sbjct: 58 SFPL-----EAIPHTPLGSVVINMPLAQTNAMKLGHSLEEEIALLFIHGVLHLLGYDH-- 110 Query: 145 DKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 EKDKGEQRQKESELIKAFNLP 131 >gi|157414434|ref|YP_001481690.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni 81116] gi|157385398|gb|ABV51713.1| hypothetical protein C8J_0114 [Campylobacter jejuni subsp. jejuni 81116] gi|307747078|gb|ADN90348.1| Putative metalloprotease [Campylobacter jejuni subsp. jejuni M1] gi|315931515|gb|EFV10482.1| uncharacterized protein family UPF0054 family protein [Campylobacter jejuni subsp. jejuni 327] Length = 134 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L S F+ VEL VF DS ++ +N E R DK T+VLSFP SL LG Sbjct: 11 LESIASFLSPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLENID----ESLPLG 64 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ ++E Sbjct: 65 SVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEKELIEHF 122 Query: 163 GIN 165 + Sbjct: 123 NLP 125 >gi|108760629|ref|YP_632898.1| cupin domain-containing protein [Myxococcus xanthus DK 1622] gi|123374295|sp|Q1D375|RRMF_MYXXD RecName: Full=Probable rRNA maturation factor gi|108464509|gb|ABF89694.1| cupin domain protein [Myxococcus xanthus DK 1622] Length = 294 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 24/151 (15%) Query: 34 VVFAKAVSNLISKGYFVKE-NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 FA+ ++ E + VELSL D I LN +R DK T+VLSFP Sbjct: 145 RDFARLLTTWARAYLVQLELSGVELSLSLVDDRAIRRLNRTWRKKDKATDVLSFPAGDLP 204 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII-----------HGFLHLLGYD 141 LGD+V++ + + +A G+ E+ + + Sbjct: 205 KGTPGPRPLGDVVISLDTAKRQAKEYGRTLESEMARYLAHGLLHLLGHDH---------- 254 Query: 142 HVDDKDACVMEGLERSILEDLG-INDPYEVD 171 +DA M LE +L + G + D +VD Sbjct: 255 -ERPRDAKRMAALEEQLLGERGMVADSLQVD 284 >gi|193216879|ref|YP_002000121.1| hypothetical protein MARTH_orf636 [Mycoplasma arthritidis 158L3-1] gi|193002202|gb|ACF07417.1| conserved hypothetical protein [Mycoplasma arthritidis 158L3-1] Length = 106 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 66 RIETLNFEYRGIDKPTNVLSFPTA-FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +++ LN +R + T++LSFP + L LG I+++ I+ +A + Sbjct: 4 KMKKLNRHFRNKNYVTDILSFPLEGLEELNFLEVLPLGQIIMSPWKIKKQAKEFNHSLKR 63 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ HG HL G+DH + +A +M +I+ L I Sbjct: 64 EFCYIFAHGIAHLFGFDHQTEDEAKIMNAHVDNIMNKLNI 103 >gi|86153617|ref|ZP_01071820.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842578|gb|EAQ59790.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni HB93-13] Length = 134 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L S F+ VEL VF DS ++ +N E R DK T+VLSFP SL LG Sbjct: 11 LESIASFLSPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLENID----ESLPLG 64 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ ++E Sbjct: 65 SVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEKELIEYF 122 Query: 163 GIN 165 + Sbjct: 123 NLP 125 >gi|227872335|ref|ZP_03990689.1| possible metal-dependent hydrolase [Oribacterium sinus F0268] gi|227841818|gb|EEJ52094.1| possible metal-dependent hydrolase [Oribacterium sinus F0268] Length = 141 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 47/136 (34%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 45 SKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS------ 98 S Y V LS+ F +S + LN RGID T+VLSFP G Sbjct: 4 SLDYVSCPYDVSLSVSFIESEEMRELNLSQRGIDYATDVLSFPLLSLDPPGSFPESLEEE 63 Query: 99 ----------LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 LMLGDIVL ++ ++ +A G E L LI H LHL YDH+++++ Sbjct: 64 WGNFDPETGELMLGDIVLNWDKVKEQAESYGHSLERELAFLIAHSLLHLFSYDHMEEEER 123 Query: 149 CVMEGLERSILEDLGI 164 ME + ILE+ G Sbjct: 124 KEMEQKQEEILENRGY 139 >gi|33864330|ref|NP_895890.1| hypothetical protein PMT2065 [Prochlorococcus marinus str. MIT 9313] gi|46577390|sp|Q7V498|RRMF_PROMM RecName: Full=Probable rRNA maturation factor gi|33641110|emb|CAE22239.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 187 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 4/135 (2%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 L E V + L ++ L L TD I LN +R + T+VLSF Sbjct: 46 DLTAWIESV--RRDPTLTCPEIVRLSPMLSLGLQLTDDATITELNHSWRQRSESTDVLSF 103 Query: 87 PTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 P S + + LGDIV++ + + +A E L L+ HG LHLLG+DH Sbjct: 104 PALDNSLVLPTDTCVELGDIVVSVQTAQRQAKQHSHELGLELRWLVSHGLLHLLGWDHPT 163 Query: 145 DKDACVMEGLERSIL 159 D+ M + +L Sbjct: 164 DQSLKTMLSYQEQLL 178 >gi|222099958|ref|YP_002534526.1| Putative metalloprotease [Thermotoga neapolitana DSM 4359] gi|254807298|sp|B9K877|RRMF_THENN RecName: Full=Probable rRNA maturation factor gi|221572348|gb|ACM23160.1| Putative metalloprotease [Thermotoga neapolitana DSM 4359] Length = 149 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 9/123 (7%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 K++S + + + V +++ +I+ +N E+RG D PT+VL+FP Sbjct: 11 KEILKSLSEKLDEIVKKEIGNVNTNVILVSKDQIKEMNREFRGEDFPTDVLTFPLFEE-- 68 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVME 152 + G+I + E++E A FE L+ ++IHG LHL GYDH +DK+A M Sbjct: 69 ------VYGEIYICPEVVEENAKEYNNTFEKELIEVVIHGILHLAGYDHEFEDKNAKEMF 122 Query: 153 GLE 155 + Sbjct: 123 EKQ 125 >gi|260910780|ref|ZP_05917432.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635102|gb|EEX53140.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 140 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + E+ +F + +I +N EY G D T+V Sbjct: 7 DGVKMPKIKRKDTTAWIKAV---AQTYGRKVGEVGYMFVNDEKILEINNEYLGHDYYTDV 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GDIV++ + + A + GK +E+ L +IIHG LHL G + Sbjct: 64 ITFDYDEGD------VVNGDIVISLDTVRTNAEMFGKAYEDELYRVIIHGILHLCGLNDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E LE Sbjct: 118 GPGEREIMEKAENKALE 134 >gi|307298543|ref|ZP_07578346.1| protein of unknown function UPF0054 [Thermotogales bacterium mesG1.Ag.4.2] gi|306915708|gb|EFN46092.1| protein of unknown function UPF0054 [Thermotogales bacterium mesG1.Ag.4.2] Length = 142 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 16/153 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++QI + + +E + + E V K + I L+L+FTD I ++ Sbjct: 1 MEIQIQNKTSKKIEESRISNIVEKVV---------KAELGERKIGMLNLLFTDDSEIRSI 51 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+R D+PT+VLSF G ++GDIV++ E I +A G FE L +++ Sbjct: 52 NKEFRHRDEPTDVLSFQY------GLEEEIVGDIVISLERISEQAGEFGNSFEEELYYIL 105 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDL 162 IHG LH+LG+ H D + + L+R+ + Sbjct: 106 IHGVLHVLGHTHEGYDDEGEEIFSLQRNYYKRF 138 >gi|153952235|ref|YP_001397375.1| putative metalloprotease [Campylobacter jejuni subsp. doylei 269.97] gi|152939681|gb|ABS44422.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. doylei 269.97] Length = 135 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L S F+ VEL VF DS ++ +N E R DK T+VLSFP SL LG Sbjct: 11 LESIASFLGPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLENID----ESLPLG 64 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ ++E Sbjct: 65 SVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEKELIEHF 122 Query: 163 GIN 165 + Sbjct: 123 NLP 125 >gi|325181482|emb|CCA15916.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 165 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FASSDGCSSLMLGD 103 + +LS++ T ++ LN ++R DK T++LSFP+ F + LGD Sbjct: 37 PKYPWDLSVILTTDQQLHRLNKQFRKQDKTTDILSFPSHNINQPGRFPNVRTPEDRYLGD 96 Query: 104 IVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 I ++ ++ + G + + L HG HL+GYDH D++ M E +L Sbjct: 97 IYISLPYVKKYCDEEGTDINEQMRVLFAHGICHLMGYDHETDQEHERMAKAEDYLLR 153 >gi|3643597|gb|AAC42244.1| hypothetical protein [Arabidopsis thaliana] Length = 343 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 30/162 (18%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEV-------VFAKAVSNLISKGYFVKE---------N 53 L + I +E L D++ ++ + E+ A + L Y +E Sbjct: 83 ELSVSICIEEQL-PDDLEIQNIAEMLRLNVPMAMTLAFNGLKDSKYKTRETDIEDLGGYE 141 Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI 113 VELS++ + I LN E+RG D T+VLS LM+GD+V++ E Sbjct: 142 TVELSVMLCNDDFICKLNKEWRGEDHATDVLSMSQHVPEL-KLPVLMMGDLVISVETAAR 200 Query: 114 EANVLGKEFENHLVHLI------------IHGFLHLLGYDHV 143 +A G + + L+ IHG LHLLG+DH Sbjct: 201 QAAERGHTLLDEIRILVSLFADTLNVFSKIHGLLHLLGFDHE 242 >gi|225389159|ref|ZP_03758883.1| hypothetical protein CLOSTASPAR_02905 [Clostridium asparagiforme DSM 15981] gi|225044776|gb|EEG55022.1| hypothetical protein CLOSTASPAR_02905 [Clostridium asparagiforme DSM 15981] Length = 140 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 21/145 (14%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I +E + E L E + V+ + Y E++++ TD+ I+ +N Sbjct: 1 MTITIE---YEAEKQLDLPYEDIIRDVVNESLD--YEKCPYEAEVNVILTDNQAIQEINR 55 Query: 73 EYRGIDKPTNVLSFPTAFAS----------------SDGCSSLMLGDIVLAYEIIEIEAN 116 E+R ID PT+VLSFP + LMLGDIV++ + +E +A Sbjct: 56 EHRQIDAPTDVLSFPMVDYEAPSDFDHVEDAVEDYFNPETGELMLGDIVISVDKVEEQAE 115 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYD 141 G L L+ H LHL GYD Sbjct: 116 KYGHSQTRELAFLVAHSMLHLCGYD 140 >gi|32491196|ref|NP_871450.1| hypothetical protein WGLp447 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173416|sp|Q8D2A7|RRMF_WIGBR RecName: Full=Probable rRNA maturation factor gi|25166403|dbj|BAC24593.1| ybeY [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 152 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 3/131 (2%) Query: 39 AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 I + + + E++L + I+ LN ++ + PTN+L+FP ++D S Sbjct: 23 KFKFWIKSIFLHFKKVSEINLRLVEKKEIKNLNKKFLKKNYPTNILAFPCIMPNNDQIS- 81 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA-CVMEGLERS 157 LGD+V+ EI+E EA K E+H H+IIHG LHLLGYDH ++ + ME LE Sbjct: 82 -FLGDLVVCSEIVEKEAKNQNKSVESHWAHIIIHGTLHLLGYDHSNNSNKIEEMEILEIK 140 Query: 158 ILEDLGINDPY 168 L G ++PY Sbjct: 141 FLNLFGYHNPY 151 >gi|169331623|ref|ZP_02860816.1| hypothetical protein ANASTE_00007 [Anaerofustis stercorihominis DSM 17244] gi|169259685|gb|EDS73651.1| hypothetical protein ANASTE_00007 [Anaerofustis stercorihominis DSM 17244] Length = 152 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 6/128 (4%) Query: 17 VENALWGDEIHLRTLCEVVFAK---AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 +E + D + + E + K A++ + F K + ++S+ +S I+TLN Sbjct: 2 IETEVLFDNRSGKDVSEETYNKIQLAINKTLEYENFKKPS--QVSVSLVNSEEIKTLNNY 59 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 YR IDK T+VLSFP + ++LGD+VL + + +A G + + +L +H Sbjct: 60 YRNIDKTTDVLSFPMDDDEFED-EVIILGDVVLCLDKAKEQAIEFGHSLDREICYLTVHS 118 Query: 134 FLHLLGYD 141 LHLLG+D Sbjct: 119 TLHLLGFD 126 >gi|282858165|ref|ZP_06267360.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] gi|282584087|gb|EFB89460.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] Length = 190 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 8/163 (4%) Query: 1 MSVKKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGY--FVKENIVELS 58 + ++ P + IA + + L F + ++L + + V++S Sbjct: 6 LKQRRRKNPEARILIAS-DIEQDPLLTLAKTNIATFERLAADLYDVHWPVWRAHGGVQIS 64 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPT-----AFASSDGCSSLMLGDIVLAYEIIEI 113 L F D R+ +N EYR PT+VLSFP F L+LGDIV+ +I Sbjct: 65 LQFLDETRMAEVNSEYRQTHAPTDVLSFPLFEKEGRFVPDAQLPPLLLGDIVVCPAVIRK 124 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 A E+ L ++ HG LHLL +DH + M ++ Sbjct: 125 NAVERRVSEESELALVVFHGILHLLAWDHDTPEKQERMWSVQE 167 >gi|269926173|ref|YP_003322796.1| protein of unknown function UPF0054 [Thermobaculum terrenum ATCC BAA-798] gi|269789833|gb|ACZ41974.1| protein of unknown function UPF0054 [Thermobaculum terrenum ATCC BAA-798] Length = 131 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 +S++ TD +I L+ E+ GI+ PT+V+S+P++ + LGDI ++ E E +A Sbjct: 14 VSILLTDDDQIAKLHLEHMGIEGPTDVMSWPSSDFERENFH--FLGDIAVSCETAEAQAR 71 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 G E + L +HG LHLLG+D ++ M+ I+ Sbjct: 72 DQGHPVETEVSVLAVHGLLHLLGWDDQTPQEREEMQKRVDYIVSK 116 >gi|83944997|ref|ZP_00957363.1| hypothetical protein OA2633_10219 [Oceanicaulis alexandrii HTCC2633] gi|83851779|gb|EAP89634.1| hypothetical protein OA2633_10219 [Oceanicaulis alexandrii HTCC2633] Length = 158 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 70/156 (44%), Gaps = 12/156 (7%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++ VE W L C ++ + ++F+D + LN Sbjct: 11 VEFVVEADAWSGHDGLMRACLQAIEAGLNAIEDPRAGAAV------ILFSDDATVHELNR 64 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 +R DK TNVLSFP GD++LAYE EA +H HL +H Sbjct: 65 RFRDKDKSTNVLSFPAPEREGYP------GDVILAYETCAKEAQAAAISLIDHAAHLALH 118 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 G LHL G+DH ++ +A ME LE ++L LGI DPY Sbjct: 119 GVLHLNGFDHQEEDEAAAMEALETAVLTGLGIQDPY 154 >gi|330836438|ref|YP_004411079.1| metalloprotease ybeY [Spirochaeta coccoides DSM 17374] gi|329748341|gb|AEC01697.1| metalloprotease ybeY [Spirochaeta coccoides DSM 17374] Length = 153 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 G E+ + E V +S ++S + VE+S F I LN E+R D+ T+ Sbjct: 11 GQEMFKESYPEDVILDRISGILSD---LGLENVEMSCSFVSDEEIRRLNAEWRDRDESTD 67 Query: 83 VLSFPTA----FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLL 138 +LSF S+DG MLGD+V++ E ++ + + L L++HG LHLL Sbjct: 68 ILSFVQEDGEAMPSADGNEWRMLGDLVISPESLKRNSEYFTVSLDEELHRLLVHGMLHLL 127 Query: 139 GYDHVDDKDACVMEGLERSILEDL 162 G DH + M + +L L Sbjct: 128 GDDHATNDPQEPMLIRQEEMLRRL 151 >gi|268679311|ref|YP_003303742.1| hypothetical protein Sdel_0671 [Sulfurospirillum deleyianum DSM 6946] gi|268617342|gb|ACZ11707.1| protein of unknown function UPF0054 [Sulfurospirillum deleyianum DSM 6946] Length = 140 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ LVF +S + LN E+RG+DK T+VLSFP D LG IV+ YE + +A Sbjct: 28 EVELVFINSADMHALNLEHRGVDKTTDVLSFPI-----DDFPHAPLGSIVINYEYAKEKA 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG E+ + L IHG LHLLGYDH + D M E++++E + Sbjct: 83 LALGHSHEDEITLLFIHGMLHLLGYDH--EVDQGEMREKEKALIEQYALP 130 >gi|308183263|ref|YP_003927390.1| putative metalloprotease [Helicobacter pylori PeCan4] gi|308065448|gb|ADO07340.1| putative metalloprotease [Helicobacter pylori PeCan4] Length = 140 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV + +N + RG D T+VLSFP + LG +V+ + + A Sbjct: 30 IELVLVSDETMREINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQTNAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG E+ + L IHG LHLLGYDH +KD E +++ + Sbjct: 85 KLGHSLEDEIALLFIHGVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 131 >gi|157818335|ref|NP_001101999.1| hypothetical protein LOC361822 [Rattus norvegicus] gi|149043696|gb|EDL97147.1| similar to RIKEN cDNA A130042E20; open reading frame 57 (predicted) [Rattus norvegicus] Length = 164 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP F LGD+ Sbjct: 33 KKFDLGIICVDNKNIQNINRIYRNKNVPTDVLSFPFHENLKAGEFPQPRSPDDYNLGDVF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I + +++ + L HG HLLG+ H + + M E+ +LE+L Sbjct: 93 LGVEYI-FQYCKGNEDYYDVLTVTATHGLCHLLGFTHSSEAEWQKMYNQEKLVLEEL 148 >gi|303237783|ref|ZP_07324341.1| translation metalloprotein YbeY [Prevotella disiens FB035-09AN] gi|302482008|gb|EFL45045.1| translation metalloprotein YbeY [Prevotella disiens FB035-09AN] Length = 142 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L + + K + + + + E+ +F D +I +N EY G D T+V++ Sbjct: 9 VKLPKIGKRETTKWIKAVAETH---GKKVGEIGYMFVDDEKILEVNNEYLGHDYYTDVIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + + GDIV++ + + A GK +E L +IIHG LHL G + Sbjct: 66 FDYCEENE------LNGDIVISLDTVRTNAEKFGKTYEEELYRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 120 GEREIMEENENKALAIL 136 >gi|310779143|ref|YP_003967476.1| protein of unknown function UPF0054 [Ilyobacter polytropus DSM 2926] gi|309748466|gb|ADO83128.1| protein of unknown function UPF0054 [Ilyobacter polytropus DSM 2926] Length = 154 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 5/156 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 L L+I E + ++I + K + ++ + Y + V +S++ TD+ I+ Sbjct: 2 ELVLEIGNETEGYEEKIDISN-----VEKYIKGVLEEEYPEAKKPVYISMLLTDNENIQI 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N +YRG D PT+V+SF + LGDIV++ E +E +A G F+ ++ Sbjct: 57 VNRDYRGKDTPTDVISFAYHETEFEIGPYDTLGDIVISLERVEEQAEDYGHNFQREFYYV 116 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + HG LHLLGYDH++D+D +M E IL+ G Sbjct: 117 LTHGLLHLLGYDHIEDEDKSIMREKEEEILKKHGYT 152 >gi|203283986|ref|YP_002221726.1| hypothetical protein BDU_64 [Borrelia duttonii Ly] gi|226701634|sp|B5RKV9|RRMF_BORDL RecName: Full=Probable rRNA maturation factor gi|201083429|gb|ACH93020.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 148 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 7/148 (4%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I E LW + + R + ++S F+ ELS++ ++ I+ LN E+ Sbjct: 2 IKEELNLWAEGVEFRHWD-----AYYNFILSVLNFLCIKEYELSVILCNNEYIQKLNGEF 56 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R +PT+VLSF F S+ + + GDI+++ E +E + E L IHG Sbjct: 57 RQKPEPTDVLSFNY-FEGSEQINHKIQGDIIISLEYLEFSSLEFNVEMYEELQRNTIHGI 115 Query: 135 LHLLGYDH-VDDKDACVMEGLERSILED 161 LHL+GY H +D M ++ +L + Sbjct: 116 LHLIGYTHDTNDFQNETMLIIQERVLRE 143 >gi|282880546|ref|ZP_06289253.1| metalloprotein, YbeY/ UPF0054family [Prevotella timonensis CRIS 5C-B1] gi|281305649|gb|EFA97702.1| metalloprotein, YbeY/ UPF0054family [Prevotella timonensis CRIS 5C-B1] Length = 137 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 9/138 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D + + + + + + + + I E+ +F D +I +N EY G D T+ Sbjct: 6 ADGVKMPNIKKRETSAWIKAVAAT---YGRKIGEVGYMFVDDKKILEVNNEYLGHDYYTD 62 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 V++F + + GDIV++ + + A + GK +E L +IIHG LHL G + Sbjct: 63 VITFDYDEGDT------VNGDIVISLDTVRTNAELFGKTYEEELHRVIIHGILHLCGIND 116 Query: 143 VDDKDACVMEGLERSILE 160 + ME E L Sbjct: 117 KGPGEREQMEAAENKALA 134 >gi|307247949|ref|ZP_07529982.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306855553|gb|EFM87723.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 405 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 8/117 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN+ +L +L ++ + L + E+++ D Sbjct: 1 MIDLQIACENSE-----NLPSLEQLTLWVQ-TALAYEAQTEDFPETEMTIRIVDEAESHE 54 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H Sbjct: 55 LNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESHC 109 >gi|220702590|pdb|1TVI|A Chain A, Solution Structure Of Tm1509 From Thermotoga Maritima: Vt1, A Nesgc Target Protein Length = 172 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKEN---IVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 +R L E +K + NL K + + V ++++ I+ LN ++RG D+PT+VL Sbjct: 24 IRILGEGKGSKLLENLKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDRPTDVL 83 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV- 143 +FP + G+I + I+E A FE L+ ++IHG LHL GYDH Sbjct: 84 TFPLMEED-------VYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEF 136 Query: 144 DDKDACVMEGLERSILED 161 +DK++ M ++ +E+ Sbjct: 137 EDKNSKEMFEKQKKYVEE 154 >gi|203287529|ref|YP_002222544.1| hypothetical protein BRE_63 [Borrelia recurrentis A1] gi|226701633|sp|B5RQN9|RRMF_BORRA RecName: Full=Probable rRNA maturation factor gi|201084749|gb|ACH94323.1| uncharacterized conserved protein [Borrelia recurrentis A1] Length = 148 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 7/148 (4%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I E LW + + R L + ++S F+ ELS++ ++ I+ LN E+ Sbjct: 2 IKEELNLWAEGVEFRHLD-----AYYNFILSVLNFLCIKEYELSVILCNNEYIQKLNGEF 56 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R +PT+VLSF F S+ + + GDIV++ E +E + E L IHG Sbjct: 57 RQKPEPTDVLSFNY-FEGSEQINHKIQGDIVISLEYLEFSSLEFNVEMYEELQRNTIHGI 115 Query: 135 LHLLGYDH-VDDKDACVMEGLERSILED 161 LHL+GY H +D M ++ +L + Sbjct: 116 LHLIGYTHDTNDFQNETMLIIQERVLRE 143 >gi|307261440|ref|ZP_07543111.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868835|gb|EFN00641.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 405 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 8/117 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN+ +L +L ++ + L + E+++ D Sbjct: 1 MIDLQIACENSE-----NLPSLEQLTLWVQ-TALAYEAQTEDFPETEMTIRIVDEAESHE 54 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H Sbjct: 55 LNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESHC 109 >gi|307250205|ref|ZP_07532161.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857734|gb|EFM89834.1| Acetyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 405 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 8/117 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN+ +L +L ++ + L + E+++ D Sbjct: 1 MIDLQIACENSE-----NLPSLEQLTLWVQ-TALAYEAQTEDFPETEMTIRIVDEAESHE 54 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN YRG DKPTNVLSFP F +G +LGD+V+ +++E E E+H Sbjct: 55 LNLTYRGKDKPTNVLSFP--FEVPEGIELPLLGDLVICRQVVEKEVEEQQISLESHC 109 >gi|57237128|ref|YP_178140.1| putative metalloprotease [Campylobacter jejuni RM1221] gi|86149543|ref|ZP_01067773.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151268|ref|ZP_01069483.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 260.94] gi|88597229|ref|ZP_01100464.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 84-25] gi|205356496|ref|ZP_03223260.1| hypothetical protein Cj8421_0120 [Campylobacter jejuni subsp. jejuni CG8421] gi|218561802|ref|YP_002343581.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315123723|ref|YP_004065727.1| hypothetical protein ICDCCJ07001_114 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|46577566|sp|Q9PJ06|RRMF_CAMJE RecName: Full=Probable rRNA maturation factor gi|62901174|sp|Q5HX45|RRMF_CAMJR RecName: Full=Probable rRNA maturation factor gi|57165932|gb|AAW34711.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni RM1221] gi|85839811|gb|EAQ57070.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841615|gb|EAQ58862.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 260.94] gi|88190290|gb|EAQ94264.1| conserved hypothetical protein TIGR00043 [Campylobacter jejuni subsp. jejuni 84-25] gi|112359508|emb|CAL34292.1| conserved hypothetical protein Cj0121 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205345683|gb|EDZ32322.1| hypothetical protein Cj8421_0120 [Campylobacter jejuni subsp. jejuni CG8421] gi|284925414|gb|ADC27766.1| putative metalloprotease [Campylobacter jejuni subsp. jejuni IA3902] gi|315017445|gb|ADT65538.1| hypothetical protein ICDCCJ07001_114 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057561|gb|ADT71890.1| predicted metal-dependent hydrolase [Campylobacter jejuni subsp. jejuni S3] gi|315926941|gb|EFV06303.1| uncharacterized protein family UPF0054 family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 135 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L S F+ VEL VF DS ++ +N E R DK T+VLSFP SL LG Sbjct: 11 LESIASFLSPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLENID----ESLPLG 64 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ ++E Sbjct: 65 SVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEKELIEHF 122 Query: 163 GIN 165 + Sbjct: 123 NLP 125 >gi|257469443|ref|ZP_05633535.1| metal-binding protein [Fusobacterium ulcerans ATCC 49185] gi|317063687|ref|ZP_07928172.1| metal-binding protein [Fusobacterium ulcerans ATCC 49185] gi|313689363|gb|EFS26198.1| metal-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 155 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E K + + + F + V LS++FT + I+ +N +YRG D+PT+V+SF Sbjct: 20 EEEMKKYIKEAL-ESEFESDRPVYLSILFTGNEEIQVINKQYRGKDQPTDVISFAYHETE 78 Query: 93 SDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 LGDIV++ E ++ +A + L +++ HG LHLLGYDH+++ D M Sbjct: 79 DFDIGPYDTLGDIVISMERVDEQAAEYNHSPKRELYYVLTHGLLHLLGYDHIEEDDKKEM 138 Query: 152 EGLERSILEDLGIN 165 E IL G Sbjct: 139 RAREEEILGQFGYT 152 >gi|148887457|sp|Q4A620|RRMF_MYCS5 RecName: Full=Probable rRNA maturation factor gi|144575092|gb|AAZ43801.2| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 155 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 36 FAKAVSNLIS--KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FAS 92 F K + +++ YF + L + S+ LNFEYR DK T++LSF F Sbjct: 20 FEKEMHEILNNFAKYFKINKQIILDVSIVSSYTSRKLNFEYRQKDKTTDILSFGYDDFDL 79 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 D L LG++V+ I+ +A + + ++L HG +HL GYDH +K+ M+ Sbjct: 80 YDKMPFLNLGELVICNNKIKKQAIIFNHSIKREFLYLFTHGLVHLYGYDHQSEKEKKEMD 139 Query: 153 GLERSILEDLGIN 165 + SI L I Sbjct: 140 FIVDSIFNPLKIT 152 >gi|315587050|gb|ADU41431.1| probable metalloprotease [Helicobacter pylori 35A] Length = 142 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + + + + LV + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANALAPTQI----------------IELVLVSDKTMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + RG D T+VLSFP + LG +V+ + + A LG E+ + L IH Sbjct: 46 DLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQTNALKLGHSLEDEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 131 >gi|34556974|ref|NP_906789.1| putative metalloprotease [Wolinella succinogenes DSM 1740] gi|46577355|sp|Q7MSD7|RRMF_WOLSU RecName: Full=Probable rRNA maturation factor gi|34482689|emb|CAE09689.1| conserved hypothetical protein [Wolinella succinogenes] Length = 140 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 7/110 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L+ D + +N E+RGIDK T+VLSFP +G L LG I+L+ + + EA Sbjct: 28 EVELILLDDEAMRKINQEHRGIDKSTDVLSFPL-----EGGDFLPLGSILLSIDRVRAEA 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + G E L IHG LHLLGYDH D+ E ++ G+ Sbjct: 83 ELRGHSIEAEAALLFIHGMLHLLGYDHEYDQGEQ--RFKEEELITRFGLP 130 >gi|15645774|ref|NP_207951.1| putative metalloprotease [Helicobacter pylori 26695] gi|6647979|sp|O25775|RRMF_HELPY RecName: Full=Probable rRNA maturation factor gi|2314318|gb|AAD08206.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 140 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + LV I +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELVLVSDETIREINK 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + RG D T+VLSFP + LG +V+ + + A LG EN + L IH Sbjct: 46 DLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQTNALKLGHSLENEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 131 >gi|108563524|ref|YP_627840.1| putative metalloprotease [Helicobacter pylori HPAG1] gi|122386286|sp|Q1CSA6|RRMF_HELPH RecName: Full=Probable rRNA maturation factor gi|107837297|gb|ABF85166.1| hypothetical protein HPAG1_1099 [Helicobacter pylori HPAG1] Length = 140 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + LV + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELVLVSDETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + RG D T+VLSFP + LG +V+ + + A LG EN + L IH Sbjct: 46 DLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQTNALKLGHSLENEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 131 >gi|219684794|ref|ZP_03539736.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219685335|ref|ZP_03540154.1| conserved hypothetical protein [Borrelia garinii Far04] gi|219671739|gb|EED28794.1| conserved hypothetical protein [Borrelia garinii PBr] gi|219673108|gb|EED30128.1| conserved hypothetical protein [Borrelia garinii Far04] Length = 152 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 4/112 (3%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML---GDIVLAYEI 110 ELS++ D+ I+ LN ++R ++PT+VLSF + D + GDI++++E Sbjct: 36 DFELSVILCDNVYIQKLNNKFRNKNEPTDVLSFNYNELNEDLVDGINYKIQGDIIISFEY 95 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILED 161 ++ A E L + IHG LHL+G++H D M L+ ++L Sbjct: 96 LKFSAQEFNVEIYEELQRVTIHGILHLMGHNHETNDFQKEGMLILQENVLRK 147 >gi|54607131|ref|NP_766138.3| rRNA maturation factor homolog [Mus musculus] gi|47115797|sp|Q8CAV0|YBEY_MOUSE RecName: Full=rRNA maturation factor homolog gi|26332258|dbj|BAC29859.1| unnamed protein product [Mus musculus] gi|74202099|dbj|BAE23037.1| unnamed protein product [Mus musculus] gi|148699903|gb|EDL31850.1| RIKEN cDNA A130042E20 [Mus musculus] Length = 164 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSF F LGDI Sbjct: 33 KKFDLGIICVDNKTIQNINRIYRNKNVPTDVLSFSFHENLKAGEFPQPHSPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I +++ + L HG HLLG+ H + M E+ +LE+L Sbjct: 93 LGVEYILQHCRE-SEDYCDVLTVTATHGLCHLLGFTHSSKAEWQKMYNQEKLVLEEL 148 >gi|281422349|ref|ZP_06253348.1| putative metalloprotease [Prevotella copri DSM 18205] gi|281403580|gb|EFB34260.1| putative metalloprotease [Prevotella copri DSM 18205] Length = 144 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + + E+ +F D +I +N EY G D T+V Sbjct: 7 DGVKMPKIKKRDTSAWIRKVAASH---GRKVGEIGYMFVDDEKILEVNNEYLGHDYYTDV 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GDIV++ + + A GK +++ L +IIHG LHL G + Sbjct: 64 ITFDYDEDD------VINGDIVISLDTVRTNAEQFGKTYDDELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 118 GPGEREIMEENENKALALL 136 >gi|71894404|ref|YP_278512.1| hypothetical protein MS53_0389 [Mycoplasma synoviae 53] Length = 159 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 36 FAKAVSNLIS--KGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FAS 92 F K + +++ YF + L + S+ LNFEYR DK T++LSF F Sbjct: 24 FEKEMHEILNNFAKYFKINKQIILDVSIVSSYTSRKLNFEYRQKDKTTDILSFGYDDFDL 83 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 D L LG++V+ I+ +A + + ++L HG +HL GYDH +K+ M+ Sbjct: 84 YDKMPFLNLGELVICNNKIKKQAIIFNHSIKREFLYLFTHGLVHLYGYDHQSEKEKKEMD 143 Query: 153 GLERSILEDLGIN 165 + SI L I Sbjct: 144 FIVDSIFNPLKIT 156 >gi|328948521|ref|YP_004365858.1| metalloprotease ybeY [Treponema succinifaciens DSM 2489] gi|328448845|gb|AEB14561.1| metalloprotease ybeY [Treponema succinifaciens DSM 2489] Length = 164 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML--GDIVLAYEIIEI 113 E S++F I+ LN YR ID PT+VLSF +D + + L GDI ++ + + Sbjct: 39 EFSILFCSDEYIQYLNKTYRNIDNPTDVLSFENGEKYTDEDNVVWLQAGDIAISVDTLPK 98 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC------VMEGLERSILEDL 162 + L LIIHG LHL GYDH ++ M ++ +++D Sbjct: 99 NSEYFAVSQNEELKRLIIHGILHLNGYDHGEEHVEKNVEPKCEMLVFQKKLMKDF 153 >gi|317182412|dbj|BAJ60196.1| putative metalloprotease [Helicobacter pylori F57] Length = 143 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 23/155 (14%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L L+I + L D + L + V+ + + LV + + Sbjct: 3 LMLEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELVLVSDETMREI 46 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N + RG D T+VLSFP + LG +V+ + + A LG E+ + L Sbjct: 47 NRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQTNALKLGHRLEDEIALLF 101 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 IHG LHLLGYDH +KD E +++ + Sbjct: 102 IHGVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 134 >gi|308062438|gb|ADO04326.1| putative metalloprotease [Helicobacter pylori Cuz20] Length = 140 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV + +N + RG D T+VLSFP + LG +V+ + + A Sbjct: 30 IELVLVSDETMREINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQENAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L E + L IHG LHLLGYDH +KD E +++ + Sbjct: 85 KLEHSLEEEIALLFIHGVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 131 >gi|15807086|ref|NP_295815.1| hypothetical protein DR_2092 [Deinococcus radiodurans R1] gi|6459888|gb|AAF11642.1|AE002045_2 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 175 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 8/127 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A LR + A+ + + E+++V I L E+ G D Sbjct: 26 ARKRPPAGLRPALRASLSAAMQHFGGEER-------EVTVVLVGDPEIRALKLEHWGEDA 78 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T+VLSFPT + D LGDI+++ + + +A G + L HG HL+G Sbjct: 79 ATDVLSFPT-WEPGDPFMPPHLGDIIISLDTAQRQAESRGHSLTREVALLASHGLTHLVG 137 Query: 140 YDHVDDK 146 +DH + Sbjct: 138 HDHPHAE 144 >gi|34785713|gb|AAH57308.1| RIKEN cDNA A130042E20 gene [Mus musculus] Length = 164 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF-------PTAFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSF F LGDI Sbjct: 33 KKFDLGIICVDNKTIQNINRIYRNKNVPTDVLSFSFHENLKAGEFPQPHSPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L E I +++ + L HG HLLG+ H + M E+ +LEDL Sbjct: 93 LGVEYILQHCRE-SEDYCDVLTVTATHGLCHLLGFTHSSKAEWQKMYNQEKLVLEDL 148 >gi|257463002|ref|ZP_05627405.1| metal-binding protein [Fusobacterium sp. D12] gi|317060616|ref|ZP_07925101.1| metal-binding protein [Fusobacterium sp. D12] gi|313686292|gb|EFS23127.1| metal-binding protein [Fusobacterium sp. D12] Length = 164 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 1/105 (0%) Query: 62 TDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGK 120 T +H+I+ +N E+R D PT+V+SF LGDIV++ E + +A Sbjct: 57 TGNHQIQVINREFRQKDSPTDVISFAYHENEDFLVGPYDTLGDIVISLERVGEQAKEYNH 116 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 F +++ HG LH+LGYDH+D+ D M E IL G Sbjct: 117 SFTREFYYVLTHGILHILGYDHIDENDKREMREREEEILGHFGYT 161 >gi|308063942|gb|ADO05829.1| putative metalloprotease [Helicobacter pylori Sat464] Length = 140 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV + +N + RG D T+VLSFP + LG +V+ + + A Sbjct: 30 IELVLVSDETMREINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQESAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG E + L IHG LHLLGYDH +KD E +++ + Sbjct: 85 KLGHSLEEEIALLFIHGVLHLLGYDH--EKDKGEQRQKESELIKTFNLP 131 >gi|254796633|ref|YP_003081469.1| hypothetical protein NRI_0240 [Neorickettsia risticii str. Illinois] gi|254589870|gb|ACT69232.1| conserved hypothetical protein [Neorickettsia risticii str. Illinois] Length = 143 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 12/139 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + + W +I + + KA + + E S+V TD I TLN Sbjct: 2 LEIRIIDPRWTKKI---KNLDALLQKAFECCL------EGKKAEFSVVLTDDEFIRTLNK 52 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 YRG D PTNVLSF +++ ++G+++L+++ + IEA +FE+HL+H+ IH Sbjct: 53 NYRGKDAPTNVLSFNY---TNEQIGIGIIGEVILSFDRLVIEALENEIKFEDHLLHMFIH 109 Query: 133 GFLHLLGYDHVDDKDACVM 151 G LH+LGYDH DK+ M Sbjct: 110 GVLHVLGYDHSSDKETLAM 128 >gi|308184901|ref|YP_003929034.1| putative metalloprotease [Helicobacter pylori SJM180] gi|308060821|gb|ADO02717.1| putative metalloprotease [Helicobacter pylori SJM180] Length = 140 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + LV + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELVLVSDETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + R D T+VLSFP + LG +V+ + + A LG E+ + L IH Sbjct: 46 DLRNCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQENALKLGHSLEDEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDRGEQRQKEGELIKAFSLP 131 >gi|217032555|ref|ZP_03438045.1| hypothetical protein HPB128_172g18 [Helicobacter pylori B128] gi|298735834|ref|YP_003728359.1| Predicted metal-dependent hydrolase [Helicobacter pylori B8] gi|216945760|gb|EEC24384.1| hypothetical protein HPB128_172g18 [Helicobacter pylori B128] gi|298355023|emb|CBI65895.1| Predicted metal-dependent hydrolase [Helicobacter pylori B8] Length = 140 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + +V+ + + LV + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIADVLAPTQI----------------IELVLVSDETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + R D T+VLSFP + LG +V+ + + A LG EN + L IH Sbjct: 46 DLRNCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQENALKLGHSLENEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E ++E + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIEAFNLP 131 >gi|325263892|ref|ZP_08130625.1| putative metalloprotease [Clostridium sp. D5] gi|324030930|gb|EGB92212.1| putative metalloprotease [Clostridium sp. D5] Length = 165 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 16/137 (11%) Query: 44 ISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS----------- 92 + Y E++L+ T I +N +R IDK T+VLSFP Sbjct: 27 AALEYEGCPYEAEINLLLTSDEDIRDMNQMFRQIDKATDVLSFPMLEYQVPGDFSAMEEQ 86 Query: 93 -----SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + LMLGDIV++ + +A G LI H LHL GYDH+++++ Sbjct: 87 SQDCFNPESGELMLGDIVISKNKVLAQAEAYGHSPRREYAFLIAHSMLHLFGYDHMEEEE 146 Query: 148 ACVMEGLERSILEDLGI 164 +ME + ILE++ I Sbjct: 147 RLLMEQKQNDILENIQI 163 >gi|315929911|gb|EFV09070.1| uncharacterized protein family UPF0054 family protein [Campylobacter jejuni subsp. jejuni 305] Length = 135 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L S F+ VEL VF DS ++ +N E R DK T+VLSFP SL LG Sbjct: 11 LESIESFLSPKDVEL--VFVDSKEMQEINLEQRKQDKTTDVLSFPLENID----ESLPLG 64 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +V+ ++ + +A LG +E + L IH LHLLG+DH +D M E+ ++E Sbjct: 65 SVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGFDHENDN--GEMREKEKELIEHF 122 Query: 163 GIN 165 + Sbjct: 123 NLP 125 >gi|282878864|ref|ZP_06287631.1| metalloprotein, YbeY/ UPF0054family [Prevotella buccalis ATCC 35310] gi|281299072|gb|EFA91474.1| metalloprotein, YbeY/ UPF0054family [Prevotella buccalis ATCC 35310] Length = 141 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + I E+ +F D +I +N EY G D T++ Sbjct: 7 DGVKMPKIKKRETSAWIKAVAAT---YGRKIGEVGYMFVDDEKILEVNNEYLGHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GDIV++ + + A GK +E L +IIHG LHL G + Sbjct: 64 ITFDYDEGD------IINGDIVISLDTVRTNAERFGKPYEEELYRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 GPGEREIMEAAEDKALA 134 >gi|300176925|emb|CBK25494.2| unnamed protein product [Blastocystis hominis] Length = 166 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 7/129 (5%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FASS 93 ++I + V+L++ + S +I LN YR ID PT++LSFPT + S Sbjct: 8 QSVIKFKKLLTAQTVDLTISYITSPQIRELNRVYRNIDSPTDILSFPTHTFITNPGYLPS 67 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 + + LGDI +A + +++ + H L HG HLLG+DHV D+D M Sbjct: 68 EKNTIRSLGDIYIATDYVDLYCKENKIDRFEHFNVLYAHGISHLLGFDHVKDEDYIKMSA 127 Query: 154 LERSILEDL 162 E+ +L++ Sbjct: 128 FEKKLLKEY 136 >gi|149177587|ref|ZP_01856189.1| hypothetical protein PM8797T_00232 [Planctomyces maris DSM 8797] gi|148843567|gb|EDL57928.1| hypothetical protein PM8797T_00232 [Planctomyces maris DSM 8797] Length = 165 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 16/167 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 QI ++N+ + E A+S L+ N E+SL D+ I LN Sbjct: 7 FQIEIQNSQ-----THLAIDETQLKTAISFLLQSEQV---NQAEISLAIVDNPTIRQLNQ 58 Query: 73 EYRGIDKPTNVLSF--------PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 +Y D T+VLSF T G + G+++++ E+ + E Sbjct: 59 QYLEHDYDTDVLSFLLDCDTAMDTNQVEFRGAGRQIEGEVIVSAEMAVAMSAEYQWPAEQ 118 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 L+ +IHG LHL GYD + +++ +M E+ I + I+ P + Sbjct: 119 ELLLYVIHGLLHLCGYDDLTEEELHIMRQREQQIFDHWQISIPRREE 165 >gi|221633270|ref|YP_002522495.1| hypothetical protein trd_1289 [Thermomicrobium roseum DSM 5159] gi|221155563|gb|ACM04690.1| putative conserved hypothetical protein TIGR00043 [Thermomicrobium roseum DSM 5159] Length = 165 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 8/134 (5%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 L V + ++ + + E+ + I L+ ++GI PT+V+SFP Sbjct: 13 EGLDRPVSVRRLARFLRFVAEREGVTGEVGVWICRDDEIAELHERFQGIPGPTDVMSFP- 71 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 LGDI ++ E ++ +G + L +HGFLHL+GYD + + + Sbjct: 72 -------GEPPYLGDIAVSAETAAVQGAEVGHGVGREIAFLTVHGFLHLIGYDDLSEPER 124 Query: 149 CVMEGLERSILEDL 162 M + +L Sbjct: 125 SRMLERQEELLHAF 138 >gi|332673960|gb|AEE70777.1| probable metalloprotease [Helicobacter pylori 83] Length = 142 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + LV + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELVLVSDETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + RG D T+VLSFP + LG +V+ + + A LG E+ + L IH Sbjct: 46 DLRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQTNALKLGHSLEDEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E ++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESEFIKAFNLP 131 >gi|51598321|ref|YP_072509.1| putative metalloprotease [Borrelia garinii PBi] gi|59799021|sp|Q662V4|RRMF_BORGA RecName: Full=Probable rRNA maturation factor gi|51572892|gb|AAU06917.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 152 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 15/158 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + + DL + VEN + HL + + + V N +S F ELS++ D+ I Sbjct: 1 MSKSDLNLLVENIKFE---HLSVFHDFILS--VLNTLSISDF------ELSVILCDNVYI 49 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 + LN ++R ++PT+VLSF + G + + GD+++++E ++ A E Sbjct: 50 QKLNNKFRNKNEPTDVLSFNYNELNEGLVGGINYKIQGDLIISFEYLKFSAQEFNVEIYE 109 Query: 125 HLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILED 161 L + IHG LHL+G++H D M L+ ++L Sbjct: 110 ELQRVTIHGILHLMGHNHETNDFQKEGMLILQENVLRK 147 >gi|15644257|ref|NP_229309.1| hypothetical protein TM1509 [Thermotoga maritima MSB8] gi|6686214|sp|Q9X1J7|RRMF_THEMA RecName: Full=Probable rRNA maturation factor gi|4982075|gb|AAD36576.1|AE001799_8 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 150 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 8/123 (6%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + + + + V ++++ I+ LN ++RG D+PT+VL+FP Sbjct: 17 LKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLTFPLMEED------- 69 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSI 158 + G+I + I+E A FE L+ ++IHG LHL GYDH +DK++ M ++ Sbjct: 70 VYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKKY 129 Query: 159 LED 161 +E+ Sbjct: 130 VEE 132 >gi|94985374|ref|YP_604738.1| hypothetical protein Dgeo_1273 [Deinococcus geothermalis DSM 11300] gi|145572754|sp|Q1IYW5|RRMF_DEIGD RecName: Full=Probable rRNA maturation factor gi|94555655|gb|ABF45569.1| Predicted metal-dependent hydrolase, UPF0054 [Deinococcus geothermalis DSM 11300] Length = 155 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM 100 + L S E+++V I L E+ G D PT+VLSFPT + D Sbjct: 20 AALTSAMRHFGVEDREVTVVLVGDRTIRALKREHWGEDAPTDVLSFPT-WEPGDPFMPPH 78 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 LGDI+++ + +A G + L HG HL+G+DH + Sbjct: 79 LGDIIISLDTAGRQAAARGHSLTREVALLASHGLTHLVGHDHPHAE 124 >gi|322378540|ref|ZP_08052988.1| putative metalloprotease [Helicobacter suis HS1] gi|322379746|ref|ZP_08054056.1| putative metalloprotease [Helicobacter suis HS5] gi|321147817|gb|EFX42407.1| putative metalloprotease [Helicobacter suis HS5] gi|321149054|gb|EFX43506.1| putative metalloprotease [Helicobacter suis HS1] Length = 157 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + L+ D ++ LN E+RG+DK T+VLSFP +LG +V+ E+ IEA Sbjct: 46 VELLLVDVEKMRELNLEFRGLDKSTDVLSFPLEIP-----GQKLLGSVVINVELATIEAK 100 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + L +HG LHLLG+DH +KD E ++ + Sbjct: 101 QRGHSLFAEITLLFVHGCLHLLGFDH--EKDRGEQREKEEEVIRVFNLP 147 >gi|307637831|gb|ADN80281.1| metal-dependent hydrolase [Helicobacter pylori 908] Length = 141 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV + +N + R D T+VLSFP + LG +V+ + + A Sbjct: 30 IELVLVSDETMREINRDLRDCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQENAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG E+ + L IHG LHLLGYDH DK E +++ + Sbjct: 85 KLGHSLEDEIALLFIHGVLHLLGYDHEKDKSEQ--RQKEGELIKAFDLP 131 >gi|291277187|ref|YP_003516959.1| hypothetical protein HMU09740 [Helicobacter mustelae 12198] gi|290964381|emb|CBG40231.1| Putative hypothetical protein [Helicobacter mustelae 12198] Length = 151 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 12/136 (8%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 TL E + ++ +S + L+F D + I+ +N EYR DKPT+VLSFP Sbjct: 13 TLLETARLEKIAQTLSPQRM-------IELLFVDENMIQGMNKEYRNQDKPTDVLSFPL- 64 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + G +++ LG +V+ I + A+ G E + L IHG LHL GYDH + D Sbjct: 65 --DAMGIANMPLGSVVICIPIAQGAAHFFGHSLEEEIALLFIHGVLHLQGYDH--EVDLG 120 Query: 150 VMEGLERSILEDLGIN 165 E+ +E + Sbjct: 121 EHYAAEKQWIEFFSLP 136 >gi|325996428|gb|ADZ51833.1| metal-dependent hydrolase [Helicobacter pylori 2018] gi|325998017|gb|ADZ50225.1| putative metalloprotease [Helicobacter pylori 2017] Length = 141 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV + +N + R D T+VLSFP + LG +V+ + + A Sbjct: 30 IELVLVSDETMREINRDLRDCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQENAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG E+ + L IHG LHLLGYDH +KD E +++ + Sbjct: 85 KLGHSLEDEIALLFIHGVLHLLGYDH--EKDKGEQRQKEGELIKAFDLP 131 >gi|149369359|ref|ZP_01889211.1| hypothetical protein SCB49_06027 [unidentified eubacterium SCB49] gi|149356786|gb|EDM45341.1| hypothetical protein SCB49_06027 [unidentified eubacterium SCB49] Length = 138 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E A +S ++ + E+S +F D + LN ++ D T+V Sbjct: 6 SETDFNLTDTEKIASWISEIVRNE---AHELGEVSYIFCDDAYLHKLNVQFLDHDTLTDV 62 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF + + + G+I ++ E + A FE+ L +IIHG LH GY Sbjct: 63 ISF------DNSLGTQVHGEIYISVERVRENAKEFSDSFEDELHRVIIHGLLHFCGYKDK 116 Query: 144 DDKDACVMEGLERSILEDL 162 D++A +M E L L Sbjct: 117 TDEEAAMMRSKENEALALL 135 >gi|317009770|gb|ADU80350.1| putative metalloprotease [Helicobacter pylori India7] Length = 140 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + LV + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELVLVSDETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + RG D T+VLSFP LG +V+ + + A LG E+ + L IH Sbjct: 46 DLRGCDYATDVLSFPLEV-----VPHTPLGSVVINAPLAQTNALKLGHRLEDEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 131 >gi|283955287|ref|ZP_06372787.1| hypothetical protein C414_000440025 [Campylobacter jejuni subsp. jejuni 414] gi|283793201|gb|EFC31970.1| hypothetical protein C414_000440025 [Campylobacter jejuni subsp. jejuni 414] Length = 136 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 8/125 (6%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM 100 L S F+ VEL +F D+ ++ +N E R DK T+VLSFP L Sbjct: 9 EFLESIASFLSSKDVEL--IFVDNKEMQEINLEQRKQDKTTDVLSFPLENID----EKLP 62 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LG +V+ ++ + +A LG +E + L IH LHLLG+DH + D M E+ ++E Sbjct: 63 LGSVVINVDLAKEKAKELGHSYEEEVSLLFIHAMLHLLGFDH--EVDNGEMREKEKELIE 120 Query: 161 DLGIN 165 + Sbjct: 121 HFNLP 125 >gi|317504317|ref|ZP_07962304.1| metal dependent hydrolase [Prevotella salivae DSM 15606] gi|315664568|gb|EFV04248.1| metal dependent hydrolase [Prevotella salivae DSM 15606] Length = 162 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + L + + + + + + + ++ +F D +I +N EY G D T++ Sbjct: 26 DGVSMPKLKKRIINRWIKQVAAT---YGRKVGDIGYMFVDDAKILQVNNEYLGHDYYTDI 82 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GD+V++ + ++ A + GKE+E+ L +IIHG LHL G + Sbjct: 83 ITFDYDEDD------IVSGDLVISIDTVKSNAELFGKEYEDELHRVIIHGILHLCGINDK 136 Query: 144 DDKDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 137 GPGEREIMEANENKALAIL 155 >gi|15612152|ref|NP_223804.1| putative metalloprotease [Helicobacter pylori J99] gi|11387377|sp|Q9ZK54|RRMF_HELPJ RecName: Full=Probable rRNA maturation factor gi|4155684|gb|AAD06669.1| putative [Helicobacter pylori J99] Length = 141 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + +V+ + + + LV + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIADVLASTQI----------------IELVLVSDETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + R D T+VLSFP + LG +V+ + + A LG E+ + L IH Sbjct: 46 DLRDCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQENALKLGHSLEDEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKEGELIKAFDLP 131 >gi|145559542|sp|Q9RSN2|RRMF_DEIRA RecName: Full=Probable rRNA maturation factor Length = 155 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 8/127 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A LR + A+ + + E+++V I L E+ G D Sbjct: 6 ARKRPPAGLRPALRASLSAAMQHFGGEER-------EVTVVLVGDPEIRALKLEHWGEDA 58 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T+VLSFPT + D LGDI+++ + + +A G + L HG HL+G Sbjct: 59 ATDVLSFPT-WEPGDPFMPPHLGDIIISLDTAQRQAESRGHSLTREVALLASHGLTHLVG 117 Query: 140 YDHVDDK 146 +DH + Sbjct: 118 HDHPHAE 124 >gi|119952863|ref|YP_945072.1| putative metalloprotease [Borrelia turicatae 91E135] gi|254799885|sp|A1QYL0|RRMF_BORT9 RecName: Full=Probable rRNA maturation factor gi|119861634|gb|AAX17402.1| hypothetical metal-binding protein [Borrelia turicatae 91E135] Length = 148 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 7/148 (4%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I E LW + + + + ++S F+ ELS++ ++ I+ LN ++ Sbjct: 2 IKEELNLWAEGVEFKHWD-----AYYNFILSVLDFLCIKEYELSVILCNNEYIQKLNSQF 56 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R +PT+VLSF S + GD++++ E +E + E + L IHG Sbjct: 57 RQKSEPTDVLSFNY-LEESGQIDHKIQGDLIISLEYLEFSSLEFNVELYDELQRNTIHGI 115 Query: 135 LHLLGYDHVD-DKDACVMEGLERSILED 161 LHL+GY H D M ++ +L + Sbjct: 116 LHLIGYTHKTNDFQNEEMLIIQEKVLRE 143 >gi|315639262|ref|ZP_07894424.1| metalloprotease [Campylobacter upsaliensis JV21] gi|315480588|gb|EFU71230.1| metalloprotease [Campylobacter upsaliensis JV21] Length = 135 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+F ++ + LN ++R +K T+VLSFP + +L LG IV+ + + +A Sbjct: 22 DVELIFVENEEMRELNLKHRNKNKSTDVLSFPLQAIN----EALPLGSIVINKTLAQEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + L IH LHLLG+DH +KD M E ++ + Sbjct: 78 KEFHHSLKDEISLLFIHAMLHLLGFDH--EKDRGEMRQKEEELIHLFKLP 125 >gi|188527944|ref|YP_001910631.1| putative metalloprotease [Helicobacter pylori Shi470] gi|238691942|sp|B2UUR9|RRMF_HELPS RecName: Full=Probable rRNA maturation factor gi|188144184|gb|ACD48601.1| putative metalloprotease [Helicobacter pylori Shi470] Length = 140 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV + +N + RG D T+VLSFP + LG +V+ + + A Sbjct: 30 IELVLVSDETMREINRDSRGCDYATDVLSFPL-----EAIPHTPLGSVVINMPLAQESAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG E+ + L IHG LHLLGYDH +KD E +++ + Sbjct: 85 KLGHRLEDEIALLFIHGVLHLLGYDH--EKDKGEQRQKESELIKTFNLP 131 >gi|57505296|ref|ZP_00371225.1| conserved hypothetical protein TIGR00043 [Campylobacter upsaliensis RM3195] gi|57016432|gb|EAL53217.1| conserved hypothetical protein TIGR00043 [Campylobacter upsaliensis RM3195] Length = 135 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 6/110 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+F ++ + LN ++R +K T+VLSFP + +L LG IV+ + + +A Sbjct: 22 DVELIFVENEEMRELNLKHRNKNKSTDVLSFPLQAIN----EALPLGSIVINKTLAQEKA 77 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 ++ + L IH LHLLG+DH +KD M E ++ + Sbjct: 78 KEFHHSLKDEISLLFIHAMLHLLGFDH--EKDKGEMRQKEEELIHLFKLP 125 >gi|317011357|gb|ADU85104.1| putative metalloprotease [Helicobacter pylori SouthAfrica7] Length = 140 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV + + +N + R D T+VLSFP + LG +V+ + + A Sbjct: 30 VELVLVSNETMRGINRDLRNCDYATDVLSFPL-----EAIPHTPLGSVVINVPLAQANAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG E+ + L IHG LHLLGYDH +KD E +++ + Sbjct: 85 KLGHSLESEIALLFIHGMLHLLGYDH--EKDQGEQRQKESELIKAFNLP 131 >gi|288925424|ref|ZP_06419358.1| metalloprotease [Prevotella buccae D17] gi|288337895|gb|EFC76247.1| metalloprotease [Prevotella buccae D17] Length = 139 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 9/140 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D + + + + + + + + + E+ +F D +I +N EY G D T+ Sbjct: 6 ADGVKMPNIRKRTVSAWIKAVAAT---FGRKVGEIGYMFVDDEKILEVNNEYLGHDYYTD 62 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +++F + GD+V++ + + A GK++ L +IIHG LHL G + Sbjct: 63 IITFDYDEGDTIS------GDLVISLDTVRTNAEKFGKDYNEELHRVIIHGILHLCGIND 116 Query: 143 VDDKDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 117 KGPGEREIMEAHENKALALL 136 >gi|157164120|ref|YP_001466415.1| putative metalloprotease [Campylobacter concisus 13826] gi|166227306|sp|A7ZCA7|RRMF_CAMC1 RecName: Full=Probable rRNA maturation factor gi|112801656|gb|EAT99000.1| putative metalloprotease _0477 [Campylobacter concisus 13826] Length = 145 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 12/135 (8%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 LCE + + + + S E+ L+F + + LN RGIDK T+VLSFP Sbjct: 3 LCEESYPEILDQICSYLT-----PGEVELLFINKDEMRELNRSERGIDKTTDVLSFPLEL 57 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 LG IV+ ++++ +A L + L HG LH+LGYDH D Sbjct: 58 -----VIHAPLGSIVINKDMVKEKAAELNHSEDAETALLFTHGLLHILGYDHEKDD--GQ 110 Query: 151 MEGLERSILEDLGIN 165 M E ++ + Sbjct: 111 MREKECEVIAKFNLP 125 >gi|315606861|ref|ZP_07881870.1| possible metal dependent hydrolase [Prevotella buccae ATCC 33574] gi|315251526|gb|EFU31506.1| possible metal dependent hydrolase [Prevotella buccae ATCC 33574] Length = 139 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 9/140 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D + + + + + + + + + E+ +F D ++ +N EY G D T+ Sbjct: 6 ADGVKMPNIRKRTVSAWIKAVAAT---FGRKVGEIGYMFVDDEKMLEVNNEYLGHDYYTD 62 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +++F + GD+V++ + + A GK++ L +IIHG LHL G + Sbjct: 63 IITFDYDEGDTIS------GDLVISLDTVRTNAEKFGKDYNEELHRVIIHGILHLCGIND 116 Query: 143 VDDKDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 117 KGPGEREIMEAHENKALALL 136 >gi|210135319|ref|YP_002301758.1| putative metalloprotease [Helicobacter pylori P12] gi|226701640|sp|B6JN00|RRMF_HELP2 RecName: Full=Probable rRNA maturation factor gi|210133287|gb|ACJ08278.1| metalloprotease [Helicobacter pylori P12] Length = 140 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + L+ + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELILVSGETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + RG D T+VLSFP + LG +V+ + + A LG EN + L IH Sbjct: 46 DLRGCDYATDVLSFPL-----EAIPHTPLGSVVINVPLAQENALKLGHSLENEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKEGELIKAFNLP 131 >gi|126736950|ref|ZP_01752685.1| hypothetical protein RSK20926_10984 [Roseobacter sp. SK209-2-6] gi|126721535|gb|EBA18238.1| hypothetical protein RSK20926_10984 [Roseobacter sp. SK209-2-6] Length = 169 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 18/171 (10%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I++E+ W ++ L A A+ + + ++ E++L+ +I LN Sbjct: 2 LEISIEDPRW-EQADLHAHAAEAIAAALMH-----FDLEPEDCEVALLACGDEKIAELNS 55 Query: 73 EYRGIDKPTNVLSFPTAF------------ASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 E+RG TNVLS+P D + LGDI +A++ EA K Sbjct: 56 EFRGKPVATNVLSWPAEDLAAEEPGGQPLQPEPDFTGEIPLGDIAIAFDTCLREAKAAQK 115 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +HL HL++HG LHLLGYDH+ D DA VME LE IL +GI+DPYE+D Sbjct: 116 PLADHLRHLLVHGVLHLLGYDHIRDPDATVMEALEVEILGKMGIDDPYEID 166 >gi|297181414|gb|ADI17603.1| predicted metal-dependent hydrolase [uncultured delta proteobacterium HF0130_19C20] Length = 157 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 9/121 (7%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS--------DGCSSLMLGDIVLAY 108 +S++ T+ I+ LN ++ D PT++LS+ + + G++V++ Sbjct: 37 ISVLITNDVEIQKLNKQFLKKDYPTDILSWTYDLEEEKKAGLESKESREENIAGELVVSA 96 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDP 167 E + +A G +FE L+ L+ HG HL G+DH + +K M LE +L+D+G+N+ Sbjct: 97 ERVSKQAFENGWDFETELIRLLAHGCAHLAGWDHEESEKQERGMLDLEIQLLKDVGLNNI 156 Query: 168 Y 168 Y Sbjct: 157 Y 157 >gi|219109735|ref|XP_002176621.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411156|gb|EEC51084.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 192 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 38/180 (21%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 I VEN I L L + + + ++SL+ D + N E Sbjct: 17 DIYVENNQESLNIDLERLK--------ATIAKIRDLMGYRTYDVSLLLVDDQEMRETNEE 68 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLM---------LGDIVLAYEIIEIE---------- 114 RG+D+PT+VLSFP A G + +GD+++ + Sbjct: 69 TRGMDEPTDVLSFPFTEAIEPGVLTPPVVDIGDYYNMGDMMIDVPYVIRACQDDAKYSHS 128 Query: 115 -----------ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 A + + E + L++HG LHL+GYDH+DD D +M E IL LG Sbjct: 129 DLEDEDRGVSAAMAMVMDPEERINMLLVHGMLHLVGYDHIDDDDYQLMVAKEEEILRLLG 188 >gi|28493250|ref|NP_787411.1| hypothetical protein TWT283 [Tropheryma whipplei str. Twist] gi|28572638|ref|NP_789418.1| hypothetical protein TW489 [Tropheryma whipplei TW08/27] gi|46577441|sp|Q83GJ1|RRMF_TROWT RecName: Full=Probable rRNA maturation factor gi|46577442|sp|Q83HN7|RRMF_TROW8 RecName: Full=Probable rRNA maturation factor gi|28410770|emb|CAD67156.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] gi|28476291|gb|AAO44380.1| unknown [Tropheryma whipplei str. Twist] Length = 171 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 6/128 (4%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 +++ + + + F+ + L + F + + L ++ G+++ ++VLSFP + + Sbjct: 21 ESLVDFLYRTLFIDKGSY-LGVSFITAAEMRDLKIKHFGVNEDSDVLSFPIDEIAPGSEN 79 Query: 98 SLM---LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 SL+ LGDIV+ E + +A FE+ + L++HGFLHLLG+DH D M L Sbjct: 80 SLVYGVLGDIVVCPETVMRQAV--RHPFEHEIYLLVVHGFLHLLGFDHSDAPSKKEMFSL 137 Query: 155 ERSILEDL 162 + ++ED Sbjct: 138 QAKLIEDF 145 >gi|189485340|ref|YP_001956281.1| membrane-associated hydrolase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254801664|sp|B1GZY8|RRMF_UNCTG RecName: Full=Probable rRNA maturation factor gi|170287299|dbj|BAG13820.1| membrane-associated hydrolase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 141 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 9/130 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 V K + + K +K +++ + D I LN +YR I + T+V+SF Sbjct: 17 HVPLLKIAAATVLKSEKIKR--YQVNFIMVDDKEIRKLNTKYRKIKRITDVISFLV---- 70 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 +GDI ++ + +A ++ L +L+IHG LHL GY D + M Sbjct: 71 ---VPEFFMGDIYISKTRSQEQAKEYSNTWQQELAYLVIHGLLHLCGYTDYDAVNKTKMF 127 Query: 153 GLERSILEDL 162 + I + L Sbjct: 128 TKQDKIFKCL 137 >gi|327398193|ref|YP_004339062.1| metalloprotease ybeY [Hippea maritima DSM 10411] gi|327180822|gb|AEA33003.1| metalloprotease ybeY [Hippea maritima DSM 10411] Length = 144 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 18/153 (11%) Query: 11 LDLQIAVENAL-WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++L + V+ + D+ + + E +F K+ N + EL++V D I Sbjct: 1 MNLTVIVKKPKEFIDQTTIESFVEFLFKKSGEN----------SEKELNIVLVDDDEITK 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN +++ PTNVLSF G +LGDI ++ + IE EA + + +L+ + Sbjct: 51 LNEQFKNRKGPTNVLSF-------YGYDGDILGDIAISSDTIEREALEKKENAKEYLLFI 103 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 I HGFLHL+GY H M ++ ++++ Sbjct: 104 IAHGFLHLVGYTHETMDKFDEMMKKQKELVDEF 136 >gi|332519443|ref|ZP_08395910.1| protein of unknown function UPF0054 [Lacinutrix algicola 5H-3-7-4] gi|332045291|gb|EGI81484.1| protein of unknown function UPF0054 [Lacinutrix algicola 5H-3-7-4] Length = 136 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E + + E + +S++I + ++E E++ VF D + LN E+ D T+++ Sbjct: 7 ENNFKLPNEAKISTWISSVILQENCIEE---EINYVFCDDEYLHKLNVEFLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + + GDI ++ E +E A FE L +++HG LH GY Sbjct: 64 SFDYS------VGKNLQGDIFISTERVEDNAKDFNVSFETELQRVLVHGILHYCGYKDKS 117 Query: 145 DKDACVMEGLERSILEDL 162 D +A +M E L L Sbjct: 118 DSEAKLMREKENFYLNLL 135 >gi|325284047|ref|YP_004256588.1| metalloprotease ybeY [Deinococcus proteolyticus MRP] gi|324315856|gb|ADY26971.1| metalloprotease ybeY [Deinococcus proteolyticus MRP] Length = 155 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 1/110 (0%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 A S+L + + E+++V D I+ L E+ G D T+VLSFP A+ D Sbjct: 16 AALESSLAAVMRHFEVADREVTVVLVDDDTIQALKLEHWGEDAATDVLSFP-AWEPGDPF 74 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 LGDI+++ + +A G + L HG HL+G+DH + Sbjct: 75 MPPHLGDIIISLDTAARQAEARGHSLTREVALLASHGMTHLVGHDHPHAE 124 >gi|317014546|gb|ADU81982.1| metal-binding heat shock protein [Helicobacter pylori Gambia94/24] Length = 141 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV + +N + R D T+VLSFP + LG +V+ + + A Sbjct: 30 IELVLVSDETMREINRDLRDCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQENAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG E+ + L IHG LHLLGYDH +KD E +++ + Sbjct: 85 KLGHSLEDEIALLFIHGVLHLLGYDH--EKDKGEQRQKEGELIKAFDLP 131 >gi|254455702|ref|ZP_05069131.1| conserved hypothetical protein TIGR00043 [Candidatus Pelagibacter sp. HTCC7211] gi|207082704|gb|EDZ60130.1| conserved hypothetical protein TIGR00043 [Candidatus Pelagibacter sp. HTCC7211] Length = 153 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 5/153 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + + W +I + K L K Y V L+L+ +++ I+ Sbjct: 1 MIKIDVLSDERAWSKKIRKKKFFFNNLCK----LFPKKYQYLNKEVSLTLLLSNNKGIKK 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++R +K T++LSFP LGDI+++Y + K F++ ++ + Sbjct: 57 LNKDFRNKNKSTDILSFPFN-NKIKISKKTYLGDIIISYNFMNKPRTQNLKSFQDKVIKI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 IHGFLHLL +DH+ +KD M E I + + Sbjct: 116 FIHGFLHLLNFDHIKNKDYKNMLREENRIYKSI 148 >gi|207091765|ref|ZP_03239552.1| putative metalloprotease [Helicobacter pylori HPKX_438_AG0C1] Length = 140 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV I +N + RG D T+VLSFP + LG +V+ + + A Sbjct: 30 IELVLVSGETIREINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQTNAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG E + L IHG LHLLGYDH +KD E +++ + Sbjct: 85 KLGHRLEEEIALLFIHGVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 131 >gi|254458014|ref|ZP_05071441.1| conserved hypothetical protein TIGR00043 [Campylobacterales bacterium GD 1] gi|207085407|gb|EDZ62692.1| conserved hypothetical protein TIGR00043 [Campylobacterales bacterium GD 1] Length = 139 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 7/110 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ L+ T I+ +N E+R ID PT+VLSFP LG IV++ +E + Sbjct: 28 EIELIITSKDEIKEINKEHRNIDAPTDVLSFPYVE-----MPMSPLGSIVISSAHVEELS 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG ++ L L IHG LHLLG+DH + D M E ++++ + Sbjct: 83 RELGHTQDDELALLFIHGLLHLLGFDH--EVDTGEMREEEARLIKEFDLP 130 >gi|224142850|ref|XP_002324751.1| predicted protein [Populus trichocarpa] gi|222866185|gb|EEF03316.1| predicted protein [Populus trichocarpa] Length = 574 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 23/173 (13%) Query: 10 RLDLQIAVENALWGD------------------EIHLRTLCEVVFAKAVSNLISKGYFVK 51 L + I +E L D ++ +L F + G F Sbjct: 94 ELSVSICIEEGLPNDPEILSIAELLRLNVPTAMKLAFDSLKSSTFKTRDETITDVGGF-- 151 Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + +ELS++ + I LN E+R D T+VLS D LMLGDIV++ E Sbjct: 152 -DSIELSVMLCNDEFIRKLNKEWRDEDHATDVLSMSQHVPGLD-LPILMLGDIVISVETA 209 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC-VMEGLERSILEDLG 163 +A G + L++HG LHL G+DH ++A M+ E +LE LG Sbjct: 210 ARQAEERGHTLIDETRVLLVHGLLHLFGFDHEISEEAEAEMDKEEGVLLESLG 262 >gi|268315812|ref|YP_003289531.1| hypothetical protein Rmar_0237 [Rhodothermus marinus DSM 4252] gi|262333346|gb|ACY47143.1| protein of unknown function UPF0054 [Rhodothermus marinus DSM 4252] Length = 146 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 8/136 (5%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L + + V +++ K + LSLV TD + LN Y G D T+VLSFP Sbjct: 18 RRLPNALLRRLVQAVLAGE---KARLRYLSLVLTDHATVRELNRTYLGHDYDTDVLSFPL 74 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + ++ G+I + + G F ++HG LHLLGYD + Sbjct: 75 SEE-----PGVVEGEIYVDLDTAAERHAEFGATFTQEACRYVVHGLLHLLGYDDATPEAR 129 Query: 149 CVMEGLERSILEDLGI 164 M LE L+ G+ Sbjct: 130 AHMHRLEDRYLQAAGL 145 >gi|317051561|ref|YP_004112677.1| hypothetical protein Selin_1386 [Desulfurispirillum indicum S5] gi|316946645|gb|ADU66121.1| protein of unknown function UPF0054 [Desulfurispirillum indicum S5] Length = 152 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS---DGCSSLMLGDIVLAYEIIEI 113 ++++ ++ +N +YR D T+VLSF ++ + ++GD+ L ++I Sbjct: 38 VNVLLCGREAMQQMNAQYRSRDYATDVLSFQYYESTELSGNTDPDEVIGDMALCLDVIRE 97 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDL 162 A G FE L +IIHG LH+ GYDH + ++ A M+ E +L+ L Sbjct: 98 NAVSRGVSFEEELSFMIIHGILHVCGYDHEISEEHAQQMQQQELRLLDLL 147 >gi|88608284|ref|YP_506143.1| hypothetical protein NSE_0249 [Neorickettsia sennetsu str. Miyayama] gi|123492190|sp|Q2GEF3|RRMF_NEOSM RecName: Full=Probable rRNA maturation factor gi|88600453|gb|ABD45921.1| conserved hypothetical protein TIGR00043 [Neorickettsia sennetsu str. Miyayama] Length = 143 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 12/139 (8%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + + W ++ + + KA+ + + E S+V TD I TLN Sbjct: 2 LEIRITDPRWTKKL---KNLDALLQKALECCL------EGKKAEFSVVLTDDEFIRTLNK 52 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 YRG D PTNVLSF +++ ++G+++L+++ + IEA +FE+HL+H+ IH Sbjct: 53 SYRGRDTPTNVLSFNY---TNEQIGIGIIGEVILSFDRLVIEALENEIKFEDHLLHMFIH 109 Query: 133 GFLHLLGYDHVDDKDACVM 151 G LH+LGYDH D++ M Sbjct: 110 GVLHVLGYDHSSDRETLAM 128 >gi|288801762|ref|ZP_06407204.1| metalloprotease [Prevotella melaninogenica D18] gi|288335804|gb|EFC74237.1| metalloprotease [Prevotella melaninogenica D18] Length = 143 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + ++ + + + + E+ +F D +I +N EY G D T++++ Sbjct: 9 VKMPKIKKREISRWIKAVAATH---GRKVGEIGYMFVDDEKILEVNNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F ++ GD+V++ + + A + K +E+ L +IIHG LHL G + Sbjct: 66 FDYDEDD------VLNGDLVISLDTVRSNAELFKKSYEDELHRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 120 GEREIMEENENKALALL 136 >gi|307718663|ref|YP_003874195.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] gi|306532388|gb|ADN01922.1| transcriptional regulator [Spirochaeta thermophila DSM 6192] Length = 148 Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 8/133 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + V A V+ ++ + V + ++++V + I+ LN +RG D+PT+VLSFP Sbjct: 13 PSPWQEVVASFVARVLEE---VGKESGDIAVVMCSAEFIQELNRTFRGKDEPTDVLSFPN 69 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + S + GDIV+A E++ +A G L+ +I+HG LHL G DH+ + Sbjct: 70 SEG-----GSRIQGDIVIAPEVVVHQAADWGVPAHEELLRVILHGLLHLSGMDHMSTDPS 124 Query: 149 CVMEGLERSILED 161 M + IL Sbjct: 125 EPMLVYQEDILSR 137 >gi|187917939|ref|YP_001883502.1| putative metalloprotease [Borrelia hermsii DAH] gi|238689307|sp|B2S1P5|RRMF_BORHD RecName: Full=Probable rRNA maturation factor gi|119860787|gb|AAX16582.1| hypothetical metal-binding protein [Borrelia hermsii DAH] Length = 148 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 7/148 (4%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I E LW + + + + ++S F+ ELS+V ++ I+ LN + Sbjct: 2 IKEELNLWAEGVEFKHWD-----AYYNFILSVLNFLCIEEYELSVVLCNNEYIQKLNSAF 56 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 R +PT+VLSF + + + GD++++ E +E + E + L IHG Sbjct: 57 RQKSEPTDVLSFNY-LEENGQINHKIQGDLIISLEYLEFSSLEFNVEMYDELQRNTIHGI 115 Query: 135 LHLLGYDHVD-DKDACVMEGLERSILED 161 LHL+GY H D M ++ +L + Sbjct: 116 LHLIGYTHETNDFQNEEMLVIQEKVLRE 143 >gi|254779710|ref|YP_003057816.1| putative metalloprotease [Helicobacter pylori B38] gi|254001622|emb|CAX29737.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 140 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + L+ + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELILVSDETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + RG D T+VLSFP + LG +V+ + + A LG E + L IH Sbjct: 46 DLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQTNALKLGHRLEEEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIKAFDLP 131 >gi|304383689|ref|ZP_07366148.1| possible metal dependent hydrolase [Prevotella marshii DSM 16973] gi|304335213|gb|EFM01484.1| possible metal dependent hydrolase [Prevotella marshii DSM 16973] Length = 140 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D I + + + + +I+ + ++ +F + ++I +N ++ D T+ Sbjct: 8 SDGIEMPNIRKRDTTAWIRAVINA---YGKRAGDIGYMFVNDNKILEINRQFLQHDYYTD 64 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 V++F D + + GDIV++ + + A + GK + L +IIHG LHL G + Sbjct: 65 VITF------DDCDGNTINGDIVISLDTVRSNAKLYGKPYGEELHRVIIHGILHLCGLND 118 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 119 KGPGERELMEAAEDRALA 136 >gi|57168710|ref|ZP_00367842.1| conserved hypothetical protein TIGR00043 [Campylobacter coli RM2228] gi|305432662|ref|ZP_07401823.1| probable metalloprotease [Campylobacter coli JV20] gi|57019991|gb|EAL56671.1| conserved hypothetical protein TIGR00043 [Campylobacter coli RM2228] gi|304444373|gb|EFM37025.1| probable metalloprotease [Campylobacter coli JV20] Length = 135 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 8/125 (6%) Query: 41 SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM 100 L F+ VEL VF +S ++ +N E R DK T+VLSFP SL Sbjct: 9 EFLEPIASFLSSKDVEL--VFVESKEMQEINLEQRKQDKTTDVLSFPLENID----ESLP 62 Query: 101 LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 LG +V+ ++ + +A LG FE + L IH LHLLG+DH + D M E+ ++E Sbjct: 63 LGSVVINVDLAKQKAKELGHSFEEEVSLLFIHAMLHLLGFDH--EVDNGEMREKEKELIE 120 Query: 161 DLGIN 165 + Sbjct: 121 HFNLP 125 >gi|261838486|gb|ACX98252.1| hypothetical protein KHP_1056 [Helicobacter pylori 51] Length = 142 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 16/143 (11%) Query: 25 EIHLRTLCEVVFA--KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 EI +T E+ F + ++N+++ + LV + +N + RG D T+ Sbjct: 3 EIDNQTPLELDFLLLEKIANVLAPTQI-------IELVLVSDGTMREINRDLRGCDYATD 55 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 VLSFP + S LG +V+ + + A LG E+ + L IHG LHLLGYDH Sbjct: 56 VLSFPL-----EAISHTPLGSVVINMPLAQTNALKLGHRLEDEIALLFIHGVLHLLGYDH 110 Query: 143 VDDKDACVMEGLERSILEDLGIN 165 +KD E +++ + Sbjct: 111 --EKDKGEQRQKESELIKAFNLP 131 >gi|242309876|ref|ZP_04809031.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523877|gb|EEQ63743.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 150 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + F + + I + + EL + D+ I+ LN +R D PT+VLSFP Sbjct: 20 LEFLEKILEKILRDSNLCNKQCEL--LLVDNPTIQALNCSHRNKDMPTDVLSFPL----- 72 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEG 153 + SL+LG IV++ + ++ + L E+ + L IHG LHL+G+DH D Sbjct: 73 ESEFSLLLGSIVISLDFVKSASAKLNHSLEDEIALLFIHGALHLIGFDHEIDN--GEHRT 130 Query: 154 LERSILEDLGIN 165 E I+ + Sbjct: 131 KEEEIITFFNLP 142 >gi|302344831|ref|YP_003813184.1| translation metalloprotein YbeY [Prevotella melaninogenica ATCC 25845] gi|302149577|gb|ADK95839.1| translation metalloprotein YbeY [Prevotella melaninogenica ATCC 25845] Length = 142 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + ++ + + + + E+ +F D +I +N EY G D T++++ Sbjct: 9 VKMPKIKKREISRWIKAVAATH---GRKVGEIGYMFVDDEKILEVNNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F ++ GD+V++ + + A + K +E+ L +IIHG LHL G + Sbjct: 66 FDYDEDD------VLNGDLVISLDTVRSNAELFKKSYEDELNRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 120 GEREIMEENENKALALL 136 >gi|323343742|ref|ZP_08083969.1| metal dependent hydrolase [Prevotella oralis ATCC 33269] gi|323095561|gb|EFZ38135.1| metal dependent hydrolase [Prevotella oralis ATCC 33269] Length = 143 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 D + + + + + + + E+ +F D +I +N +Y G D T+ Sbjct: 6 ADGVSMPKIKKRETTAWIKAVAAT---YGRKAGEIGYMFVDDAKILEVNNQYLGHDYYTD 62 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +++F + GD+V++ + + A K++E L +IIHG LHL G + Sbjct: 63 IITFDYNDGDTIN------GDLVISLDTVHSNAEKFNKKYEEELHRVIIHGILHLCGIND 116 Query: 143 VDDKDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 117 KGPGEREIMEANENKALALL 136 >gi|163754568|ref|ZP_02161690.1| glutamyl-tRNA synthetase [Kordia algicida OT-1] gi|161325509|gb|EDP96836.1| glutamyl-tRNA synthetase [Kordia algicida OT-1] Length = 140 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 9/138 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E E + + N+I+ E++ +F D + LN E+ D T+++ Sbjct: 7 ETQFELPNEAQIEQWIGNVIASEN---RKEGEINYIFCDDEYLHKLNVEFLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + + + GDI ++ E + AN FE L ++IHG LH GY Sbjct: 64 SF------DNSLGNQLHGDIFISVERVADNANDFKVSFEEELRRVMIHGILHYCGYKDKT 117 Query: 145 DKDACVMEGLERSILEDL 162 D+D M E L+ Sbjct: 118 DEDQAEMTAKENEKLQMF 135 >gi|84496851|ref|ZP_00995705.1| hypothetical protein JNB_04990 [Janibacter sp. HTCC2649] gi|84383619|gb|EAP99500.1| hypothetical protein JNB_04990 [Janibacter sp. HTCC2649] Length = 155 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E DE+ L V G +L L D +ETL Sbjct: 1 MSIDVLNETDFALDELELVACARYVM----------GEMKVHPQADLCLRLVDEAAMETL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ + PT+V+SFP + D +LGDIVL + + +A G E L Sbjct: 51 HVQWMDLPGPTDVMSFPMDELRPGSDDDDPEEGVLGDIVLCPSVAQKQAAEAGHATEEEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + L HG LHLLGYDH + ++ M L+R +L Sbjct: 111 LLLTTHGILHLLGYDHAEPEEEREMFELQRQLL 143 >gi|298373323|ref|ZP_06983312.1| metalloprotease [Bacteroidetes oral taxon 274 str. F0058] gi|298274375|gb|EFI15927.1| metalloprotease [Bacteroidetes oral taxon 274 str. F0058] Length = 136 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 7/130 (5%) Query: 32 CEVVFAKAVSNLISKGYFVKENIV-ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 ++ +++ I + IV ++S +F D +I +N ++ D T+V++F Sbjct: 11 APKLYRNSITGWIRRVANKYGKIVGDVSFIFCDDIKILEINKQFLNHDYYTDVITFDYTE 70 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 G GDI ++ E +E A F+N L ++IHG LHL G + ++ Sbjct: 71 GDVIG------GDIFISLETVESNAKEFLTTFDNELKRVMIHGILHLCGQNDKTPEEKQE 124 Query: 151 MEGLERSILE 160 M E L+ Sbjct: 125 MRYKENLALQ 134 >gi|290985008|ref|XP_002675218.1| predicted protein [Naegleria gruberi] gi|284088813|gb|EFC42474.1| predicted protein [Naegleria gruberi] Length = 231 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 27/141 (19%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD-------------- 94 F ++++F + I +LN + R PT++LS+P D Sbjct: 74 FTPHKDYGVTVLFCGNKYITSLNEKDRKKKGPTDILSYPVYSPDLDHNFALMEKDAAFND 133 Query: 95 -------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 LGD+V++ I ++H+ L+ HG LHL+GYD Sbjct: 134 DLAKLLADEHKILMEEEKFLGDMVISQPYIVDYCKENNISLDHHMALLLTHGILHLMGYD 193 Query: 142 HVDDKDACVMEGLERSILEDL 162 H D D +M+ E IL L Sbjct: 194 HETDSDYAIMKEKEDEILSGL 214 >gi|311031636|ref|ZP_07709726.1| putative metalloprotease [Bacillus sp. m3-13] Length = 157 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 39/175 (22%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +++ + E DE ++FA ++ + ELS+ F D+ RI+ Sbjct: 1 MIEIDMLDETTKLTDEQWDDIRNLLIFAAEKESI--------QPGAELSVTFVDNDRIQE 52 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS-------DGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 +N EYR D+PT+V+SF D + MLGDI+++ E +A G Sbjct: 53 INREYREKDRPTDVISFAMEELGEGEIEIHYDEEAPRMLGDIIISIPKAEEQAEEYGHSV 112 Query: 123 ENHLVHLIIHGFLHLLG------------YDHVDDKDACVMEGLERSILEDLGIN 165 + LG YDH ++ D +M ++ IL+ G+ Sbjct: 113 KRE------------LGFLALHGLLHLLGYDHENETDEKIMFDKQKEILDAYGLT 155 >gi|325109207|ref|YP_004270275.1| metalloprotease ybeY [Planctomyces brasiliensis DSM 5305] gi|324969475|gb|ADY60253.1| metalloprotease ybeY [Planctomyces brasiliensis DSM 5305] Length = 162 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 4/156 (2%) Query: 16 AVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 AV + + D+ L T + +++++ + E+ ++ D+ I +N + Sbjct: 5 AVMDIEFIDQQQLLTFDFSHLQQLAASVLAAHQITQ---AEIHVLLVDNPTIHAMNVAHL 61 Query: 76 GIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFL 135 D PT+V++FP + +IV++ E+ A G E ++H L Sbjct: 62 EHDFPTDVITFPLNDTDQQPPDYPLEAEIVISTEMAAEMAGEAGWSAEEEATLYLVHSLL 121 Query: 136 HLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HL G+D + + M E +L LG+ P E D Sbjct: 122 HLCGFDDLTEDAQREMRQRELEMLHHLGMK-PSETD 156 >gi|313203915|ref|YP_004042572.1| hypothetical protein Palpr_1441 [Paludibacter propionicigenes WB4] gi|312443231|gb|ADQ79587.1| protein of unknown function UPF0054 [Paludibacter propionicigenes WB4] Length = 138 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 9/142 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 ++I + ++ + + N F + + E++ +F RI +N +Y D T+ Sbjct: 6 AEDIKVPSIPKQKINAWIKNT---ATFYGKKVGEIAYIFCSDERILEINKQYLNHDYYTD 62 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +++F + +S ++ GDI ++ + ++ A E L ++IHG LHL G Sbjct: 63 IITFDYSESS------VISGDIFISIDTVKSNAEEFNVSIEEELKRILIHGILHLCGQAD 116 Query: 143 VDDKDACVMEGLERSILEDLGI 164 + M E L+ I Sbjct: 117 NTPELRAEMTNKENLALQTFSI 138 >gi|208435054|ref|YP_002266720.1| hypothetical protein HPG27_1104 [Helicobacter pylori G27] gi|226701639|sp|B5Z8F5|RRMF_HELPG RecName: Full=Probable rRNA maturation factor gi|208432983|gb|ACI27854.1| hypothetical protein HPG27_1104 [Helicobacter pylori G27] Length = 142 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + L+ + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELILVSGETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + RG D T+VLSFP + LG +V+ + + A LG E + L IH Sbjct: 46 DLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQTNALKLGHRLEEEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIKIFNLP 131 >gi|315185807|gb|EFU19573.1| protein of unknown function UPF0054 [Spirochaeta thermophila DSM 6578] Length = 148 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE 109 V + ++++V I+ LN +RG D+PT+VLSFP + S + GDIV+A E Sbjct: 31 VGKESGDIAVVMCSPEFIQELNRTFRGKDEPTDVLSFPDSEG-----GSRIQGDIVIAPE 85 Query: 110 IIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 ++ +A G L+ +I+HG LHL G DH+ + M + IL Sbjct: 86 VVVHQAADWGVPAHEELLRVILHGLLHLSGMDHMSTDPSEPMLVYQEDILSR 137 >gi|325859868|ref|ZP_08172998.1| translation metalloprotein YbeY [Prevotella denticola CRIS 18C-A] gi|327312920|ref|YP_004328357.1| translation metalloprotein YbeY [Prevotella denticola F0289] gi|325482794|gb|EGC85797.1| translation metalloprotein YbeY [Prevotella denticola CRIS 18C-A] gi|326946199|gb|AEA22084.1| translation metalloprotein YbeY [Prevotella denticola F0289] Length = 139 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + ++ + + + + E+ +F +I +N EY G D T++++ Sbjct: 9 VKMPRIRKRDTSRWIKAVAAT---YGRKVGEIGYMFVGDEKILEINNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F +++ GD+V++ + + A + K +E+ L +IIHG LHL G + Sbjct: 66 FDYDE------GNVLNGDLVISLDTVRSNAELFHKSYEDELNRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E LE L Sbjct: 120 GEREIMEENENKALELL 136 >gi|332188741|ref|ZP_08390454.1| uncharacterized UPF0054 family protein [Sphingomonas sp. S17] gi|332011247|gb|EGI53339.1| uncharacterized UPF0054 family protein [Sphingomonas sp. S17] Length = 171 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 80/166 (48%), Gaps = 7/166 (4%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +++ + E GDE + A+ +E+S+ T + Sbjct: 1 MIEIALIHEEPWSGDEDSWEAIATRAARAAIERTPHGPLLTTPASIEISVRLTSDDEVHA 60 Query: 70 LNFEYRGIDKPTNVLSFPTAFAS-------SDGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 LN +YR DKPTNVLSFP + ++LGDIVLA+ + EA G Sbjct: 61 LNRQYRQKDKPTNVLSFPMVQPDLIETVTQNSDDGEVLLGDIVLAHGVCIAEAADRGISP 120 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 E H HL++HG LHLLGYDH+ D +A ME +ER L LGI DPY Sbjct: 121 ETHATHLLVHGVLHLLGYDHMQDDEAEAMEAIERDALASLGIADPY 166 >gi|255322579|ref|ZP_05363724.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255300487|gb|EET79759.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 152 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 12/135 (8%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 LCE + + + + ++ VELS F D+ ++ +N RGI + T+VLSFP Sbjct: 17 LCEDDYPRILDQICD---YLTAGEVELS--FVDAEEMKEINVRQRGIYETTDVLSFPLEM 71 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 LG IV+ E++ +A LG ++ L HG LH+LG+DH + DA Sbjct: 72 H-----LHAPLGCIVINTELVAAKAAELGHSEDDETALLFTHGLLHVLGFDH--ESDAGE 124 Query: 151 MEGLERSILEDLGIN 165 M E ++E + Sbjct: 125 MRAKECEVIEKFSLP 139 >gi|187250487|ref|YP_001874969.1| hydrolase family protein [Elusimicrobium minutum Pei191] gi|259645655|sp|B2KAT6|RRMF_ELUMP RecName: Full=Probable rRNA maturation factor gi|186970647|gb|ACC97632.1| Hydrolase family protein [Elusimicrobium minutum Pei191] Length = 143 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 +F VS + K E++L+F D I +N E+ D T+V+SF F Sbjct: 20 LFKAGVSAALGK---FASKKGEVNLIFVDGKEIHKINKEFLNHDYKTDVISFNYPFP-QK 75 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGL 154 G L GDI + Y++ + A++ G+ ++ +HG LHL G D K+ M+ Sbjct: 76 GGEGLPFGDIFVCYDVAKENASLYGQGVLKEMLTYAVHGALHLAGMDDATPKERSAMDDE 135 Query: 155 ERSIL 159 I+ Sbjct: 136 TGRII 140 >gi|295131912|ref|YP_003582588.1| metalloprotease [Zunongwangia profunda SM-A87] gi|294979927|gb|ADF50392.1| metalloprotease [Zunongwangia profunda SM-A87] Length = 146 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 9/134 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E + + V+ K + +IS + + E+S +F D + +N + D T++ Sbjct: 12 SENDFDIIEKEVYKKWIERVISSE---GKRLGEISYIFCDDDYLLDINQRFLNHDTYTDI 68 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF D +L+ GDI ++ E + A ++FE L +++HG LH GY Sbjct: 69 ISF------DDSIGNLLNGDIYISTERVRENALEFNEDFETELKRVLVHGILHYCGYKDK 122 Query: 144 DDKDACVMEGLERS 157 D++A +M E Sbjct: 123 SDEEAMLMREKESE 136 >gi|170289192|ref|YP_001739430.1| hypothetical protein TRQ2_1403 [Thermotoga sp. RQ2] gi|238688755|sp|B1LBP9|RRMF_THESQ RecName: Full=Probable rRNA maturation factor gi|170176695|gb|ACB09747.1| protein of unknown function UPF0054 [Thermotoga sp. RQ2] Length = 150 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + + + + V ++++ I+ LN ++RG D PT+VL+FP Sbjct: 17 LKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDLPTDVLTFPLMEED------- 69 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSI 158 + G+I + I+E A FE L+ ++IHG LHL GYDH +D+++ M ++ Sbjct: 70 VYGEIYVCPLIVEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDRNSKEMFEKQKKY 129 Query: 159 LED 161 +E+ Sbjct: 130 VEE 132 >gi|109947837|ref|YP_665065.1| putative metalloprotease [Helicobacter acinonychis str. Sheeba] gi|122973244|sp|Q17WB0|RRMF_HELAH RecName: Full=Probable rRNA maturation factor gi|109715058|emb|CAK00066.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 140 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV ++ +N R D T+VLSFP + LG +V+ + + A Sbjct: 30 VELVLVSGEKMREINRNLRNCDYATDVLSFPL-----EAIPHTPLGSVVINMSLAQTNAL 84 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LG EN + L IHG LHLLGYDH +KD E +++ + Sbjct: 85 KLGHSLENEIALLFIHGMLHLLGYDH--EKDQGEQRQKESELIKTFNLP 131 >gi|332881691|ref|ZP_08449339.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680330|gb|EGJ53279.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 141 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + ++ + V + + + + E++ +F D +I +N +Y G D T++ Sbjct: 7 DGVKMPSIKKRENTAWVKAVAAS---YGKRVGEIAYIFVDDEKILEVNRQYLGHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GD+ ++ + + A +G +E L +IIHG LHL G + Sbjct: 64 ITFDYCEGD------VISGDLFISLDTVRTNAEQVGATYEEELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 GPGEREIMEAAEDKALA 134 >gi|330998027|ref|ZP_08321858.1| translation metalloprotein YbeY [Paraprevotella xylaniphila YIT 11841] gi|329569328|gb|EGG51108.1| translation metalloprotein YbeY [Paraprevotella xylaniphila YIT 11841] Length = 141 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + ++ + V + + + + E++ +F D +I +N +Y G D T++ Sbjct: 7 DGVKMPSIKKRENTAWVKAVAAS---YGKRVGEIAYIFVDDEKILEVNRQYLGHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GD+ ++ + + A +G +E L +IIHG LHL G + Sbjct: 64 ITFDYCEGD------VISGDLFISLDTVRTNAEQVGATYEEELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 GPGEREIMEAAEDKALA 134 >gi|226355982|ref|YP_002785722.1| metal-dependent hydrolase (metalloprotease) [Deinococcus deserti VCD115] gi|226317972|gb|ACO45968.1| putative metal-dependent hydrolase (metalloprotease) [Deinococcus deserti VCD115] Length = 155 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+++V I L E+ D T+VLSFPT + D LGDIV++ + +A Sbjct: 35 EVTVVLVGDRAIRALKLEHWDEDAATDVLSFPT-WEPGDPFVPPHLGDIVISLDTARRQA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + G + L HG HL G+DH + Sbjct: 94 DARGHSLTREVALLASHGMTHLTGHDHPHAE 124 >gi|317012939|gb|ADU83547.1| putative metalloprotease [Helicobacter pylori Lithuania75] Length = 142 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 23/153 (15%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L+I + L D + L + V+ + + LV + +N Sbjct: 2 LEIDNQTPLESDFLLLEKIANVLAPTQI----------------IELVLVSGETMREINR 45 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 + RG D T+VLSFP + LG +V+ + + A LG E + L IH Sbjct: 46 DLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQENALKLGHRLEEEIALLFIH 100 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH +KD E +++ + Sbjct: 101 GVLHLLGYDH--EKDKGEQRQKESELIKAFDLP 131 >gi|320334941|ref|YP_004171652.1| metalloprotease ybeY [Deinococcus maricopensis DSM 21211] gi|319756230|gb|ADV67987.1| metalloprotease ybeY [Deinococcus maricopensis DSM 21211] Length = 157 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++++V I L E+ G D T+VLSFPT F D LGDIV++ + +A Sbjct: 37 DVTVVLVGDRAIRALKREHWGEDAATDVLSFPT-FVPGDPFVPPHLGDIVISLDTAARQA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 G + L H HL+G+DH + Sbjct: 96 GARGHSLAREVALLASHAVTHLVGHDHPHAE 126 >gi|332291816|ref|YP_004430425.1| protein of unknown function UPF0054 [Krokinobacter diaphorus 4H-3-7-5] gi|332169902|gb|AEE19157.1| protein of unknown function UPF0054 [Krokinobacter diaphorus 4H-3-7-5] Length = 135 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + ++++I ++ + E++ +F D + LN EY D T+V+SF Sbjct: 18 LLQWLTSVIESE---QKQMGEINYIFCDDAYLHKLNVEYLNHDTLTDVISFDYT------ 68 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 ++ GD+ ++ E +E A F++ L +++HG LH GY D +A M E Sbjct: 69 SGDVISGDVYISVERVEDNAADFKTSFKDELSRVMVHGLLHYCGYKDKSDDEAKEMRAKE 128 Query: 156 RSIL 159 L Sbjct: 129 NLYL 132 >gi|240047404|ref|YP_002960792.1| putative metalloprotease mhp224 [Mycoplasma conjunctivae HRC/581] gi|239984976|emb|CAT04969.1| Putative metalloprotease mhp224 [Mycoplasma conjunctivae] Length = 150 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 1/105 (0%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-SDGCSSLMLGDIVLAYEIIEIEANVLG 119 F +++ ++ + Y+ D +VLSFP + +G +G+I++ E I +A Sbjct: 44 FVEANYMQKMCKTYKNKDYIADVLSFPDFLVNKQNGKKLAFIGEILMCPETIYYQAQSYQ 103 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 + ++ H HLL YDH+D+++A +M I++ + I Sbjct: 104 HTNKREFCYMFTHSVFHLLNYDHIDEQEAKIMHEKVEKIMQKMEI 148 >gi|281424893|ref|ZP_06255806.1| putative metalloprotease [Prevotella oris F0302] gi|299141980|ref|ZP_07035114.1| metalloprotease [Prevotella oris C735] gi|281401011|gb|EFB31842.1| putative metalloprotease [Prevotella oris F0302] gi|298576442|gb|EFI48314.1| metalloprotease [Prevotella oris C735] Length = 142 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + + + ++ +F D +I +N +Y G D T++ Sbjct: 7 DGVGMPKMKKRLINRWIRAVAAT---YGRKVGDIGYMFVDDEKILEVNNDYLGHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F ++ GD+V++ + + A GKE+++ L +IIHG LHL G + Sbjct: 64 ITFDYDEDD------IISGDLVISLDTVRTNAEQFGKEYDDELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 118 GPGEREIMEANENKALALL 136 >gi|72074176|ref|XP_793533.1| PREDICTED: similar to C21orf57 isoform A protein [Strongylocentrotus purpuratus] gi|115973189|ref|XP_001180108.1| PREDICTED: similar to C21orf57 isoform A protein [Strongylocentrotus purpuratus] Length = 182 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 6/142 (4%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + + K +L + ++ ++S++ + I +N YR D+PT+VLSF Sbjct: 7 NFQKSVAFNLDKVKGDLKALRRILRVERFDVSVICVEDKDIRQMNKIYRATDEPTDVLSF 66 Query: 87 PTAFASSDGCSSLM------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 P G LGD+ L IE + + ++ L +I HG HL+GY Sbjct: 67 PAHENLKPGRLPDPWSDLADLGDMFLGMGYIERDCTKHNADIDDVLPVIITHGLCHLIGY 126 Query: 141 DHVDDKDACVMEGLERSILEDL 162 DH + +M E ILE Sbjct: 127 DHKTQEQWKMMHDRELQILEQF 148 >gi|222151469|ref|YP_002560625.1| hypothetical protein MCCL_1222 [Macrococcus caseolyticus JCSC5402] gi|254799990|sp|B9E6W1|RRMF_MACCJ RecName: Full=Probable rRNA maturation factor gi|222120594|dbj|BAH17929.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 154 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 10/151 (6%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +++ D HL + ++ A I + E+++ F D + I+ +N YR Sbjct: 7 IDDNAQIDAKHLPEIERLLIFAAEQEGIDEE-------AEVAVSFVDENEIQAINKAYRN 59 Query: 77 IDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 D T+V+SF D +LGDI++ + +A G FE L L +HG Sbjct: 60 KDAVTDVISFALEEGEDDFEMSDEPRVLGDIIICVKRALEQAEEYGHSFERELGFLSLHG 119 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 LHLLGYDH+++ D M G + IL G+ Sbjct: 120 LLHLLGYDHMNESDEARMFGRQDEILNAFGL 150 >gi|157364821|ref|YP_001471588.1| hypothetical protein Tlet_1970 [Thermotoga lettingae TMO] gi|157315425|gb|ABV34524.1| protein of unknown function UPF0054 [Thermotoga lettingae TMO] Length = 115 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 9/112 (8%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 ++ +++SLVF R+ LN EYR ID PT+VL+F S G+I + Sbjct: 6 EDKNIDVSLVFIGERRMRNLNREYRKIDSPTDVLTFFYEEESF--------GEIFICPSQ 57 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGLERSILED 161 +E A+ + +E L ++IH LHL GYDH D + M + L + Sbjct: 58 VEKNASKYSQRYEIELFRVLIHACLHLCGYDHEFVDNKSQEMFHRQEKYLRE 109 >gi|154174537|ref|YP_001407912.1| putative metalloprotease [Campylobacter curvus 525.92] gi|112803387|gb|EAU00731.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 135 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 12/135 (8%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 LCE + + + + + F+ +ELS F +S + +N + RG DK T+VLSFP Sbjct: 3 LCEEKYPEILDEICA---FLTPGDIELS--FVNSEEMREINLKERGFDKTTDVLSFPLEL 57 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 +G IV+ +++ +A LG ++ L IHG LH+LG+DH +KD+ Sbjct: 58 -----VLHAPIGCIVINTDLVMQKAAQLGHTNDDETALLFIHGLLHVLGFDH--EKDSGQ 110 Query: 151 MEGLERSILEDLGIN 165 M E I+ + Sbjct: 111 MREKEVQIITKFKLP 125 >gi|218258573|ref|ZP_03474916.1| hypothetical protein PRABACTJOHN_00571 [Parabacteroides johnsonii DSM 18315] gi|218225343|gb|EEC97993.1| hypothetical protein PRABACTJOHN_00571 [Parabacteroides johnsonii DSM 18315] Length = 144 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 9/143 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A + ++I L + + V + + + + ++S +F +I +N +Y D Sbjct: 4 AFYAEDIKLPAIKKRAVGNWVKEVAAT---YGKKVGDISYIFCSDEKILEVNRQYLQHDY 60 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F + S D S GD+ ++ + ++ + + L IIHG LHL G Sbjct: 61 YTDIITF--DYTSGDKIS----GDLFISLDTVKTNSETFNTSYNEELHRTIIHGILHLCG 114 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 + + +ME E L L Sbjct: 115 INDKGPGEREIMEANENKALAIL 137 >gi|254442036|ref|ZP_05055512.1| conserved hypothetical protein TIGR00043, putative [Verrucomicrobiae bacterium DG1235] gi|198256344|gb|EDY80652.1| conserved hypothetical protein TIGR00043, putative [Verrucomicrobiae bacterium DG1235] Length = 158 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 7/131 (5%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 E K + L G F ELS+ F D I L+ ++ PT+V++FP Sbjct: 21 RYDESEIEKLIQTLDRAGAF-DAPAGELSIAFVDKDYIAQLHDQFMDDPTPTDVITFPGD 79 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 G+I++ ++ + A F + L +IHG+LHL G+D + D D Sbjct: 80 PDFDQA------GEIIVCPQVAQEYAQKANLSFSDELGLYLIHGYLHLCGFDDIADSDRA 133 Query: 150 VMEGLERSILE 160 M E+ LE Sbjct: 134 QMRLAEQQALE 144 >gi|303284399|ref|XP_003061490.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456820|gb|EEH54120.1| predicted protein [Micromonas pusilla CCMP1545] Length = 689 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 16/131 (12%) Query: 24 DEIHLRTLCEVV--FAKAVSNLISKG----------YFVKENIVELSLVFTDSHRIETLN 71 DEI + TL + V AK + I + Y ELS+ I LN Sbjct: 169 DEIDIATLRDAVRSDAKKLVEWILRPPPGTPLPRDLYSPTTTRAELSVALCGDAYIRALN 228 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 E+RG D T+VLSFP ++ GD+V++ + +A + L+ Sbjct: 229 NEWRGKDVATDVLSFPQ----DAFGDFVVFGDVVISVDAARRQAAAMRHSTRREARVLLT 284 Query: 132 HGFLHLLGYDH 142 HGF+HLLGYDH Sbjct: 285 HGFVHLLGYDH 295 >gi|94970564|ref|YP_592612.1| hypothetical protein Acid345_3537 [Candidatus Koribacter versatilis Ellin345] gi|123381297|sp|Q1IKR2|RRMF_ACIBL RecName: Full=Probable rRNA maturation factor gi|94552614|gb|ABF42538.1| protein of unknown function UPF0054 [Candidatus Koribacter versatilis Ellin345] Length = 152 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I L+ V +++S +++ ++ ++ T S + LN +R DK T+VLS Sbjct: 2 IILKKKLAGVSEQSLSLFLTRARKAAGVRGQVQVLVTSSDELRGLNRRFRRKDKATDVLS 61 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 FP GDI ++ +I A LG + L LI+HG LHL G+DH + Sbjct: 62 FPAIVDGEA-------GDIAISSDIASEYAYELGHSLDEELRILILHGVLHLAGHDH--E 112 Query: 146 KDACVMEGLERSILEDLGIN 165 +D ME LE + + L + Sbjct: 113 RDKGEMEALESELRDKLKLP 132 >gi|288800393|ref|ZP_06405851.1| metalloprotease [Prevotella sp. oral taxon 299 str. F0039] gi|288332606|gb|EFC71086.1| metalloprotease [Prevotella sp. oral taxon 299 str. F0039] Length = 138 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 9/138 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 +++ + + + + + + + ++ +F D +I +N EY D T+ Sbjct: 6 SEKVKMPKIKKRETTAWIKQV---AQSYGKKVGDIGYMFVDDEKILEVNREYLQHDYYTD 62 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +++F + GD+V++ + + A + GK +E L +IIHG LHL+G + Sbjct: 63 IITFDYCENDE------LNGDLVISLDTVRTNAELFGKTYEEELYRVIIHGVLHLIGIND 116 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 117 KGPGEREIMEAAENKALA 134 >gi|298207257|ref|YP_003715436.1| hypothetical protein CA2559_03360 [Croceibacter atlanticus HTCC2559] gi|83849893|gb|EAP87761.1| hypothetical protein CA2559_03360 [Croceibacter atlanticus HTCC2559] Length = 138 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 9/132 (6%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 + E F + ++I+ +N+ E++ +F D + ++N +Y D T+++SF T+ Sbjct: 12 INEDEFNSWLLSVIASE---GKNLGEINYIFCDDAYLLSINQQYLDHDTYTDIISFDTSE 68 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + + GDI ++ E I+ A ++ L +++HG LH GY D +A + Sbjct: 69 GND------LSGDIFISVERIQENAQQFNVSVDDELKRVLVHGILHFCGYKDKTDDEAKL 122 Query: 151 MEGLERSILEDL 162 M E L+ Sbjct: 123 MREKEDEKLKMF 134 >gi|283780308|ref|YP_003371063.1| hypothetical protein Psta_2534 [Pirellula staleyi DSM 6068] gi|283438761|gb|ADB17203.1| protein of unknown function UPF0054 [Pirellula staleyi DSM 6068] Length = 143 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 8/136 (5%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA 89 + + + + AV +++ G E+S+ D + LN +Y D T+ LSF Sbjct: 14 KIDKKLLSSAVRKVLALGEI---KSAEISVAVVDGDEMHQLNRQYLQHDYTTDCLSFVLD 70 Query: 90 FASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 F + G+++++ + E+ G E+ L+ +IH LHL+G+D ++ D Sbjct: 71 FEDDH-----LEGEVIVSADYAAQESLQYGWRMEDELLLYVIHASLHLIGHDDHEESDIA 125 Query: 150 VMEGLERSILEDLGIN 165 M E+ IL G+ Sbjct: 126 KMREAEKQILAQFGLE 141 >gi|325268276|ref|ZP_08134909.1| metal dependent hydrolase [Prevotella multiformis DSM 16608] gi|324989418|gb|EGC21368.1| metal dependent hydrolase [Prevotella multiformis DSM 16608] Length = 139 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + ++ + + + I E+ +F +I +N EY G D T++++ Sbjct: 9 VKMPKIRKRDTSRWIKAVAAT---YGREIGEIGYMFVGDEKILEINNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F +++ GD+V++ + + A + K +E+ L +IIHG LHL G + Sbjct: 66 FDYDE------GNVLNGDLVISLDTVRSNAELFHKSYEDELNRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 120 GEREIMEENENKALALL 136 >gi|154494262|ref|ZP_02033582.1| hypothetical protein PARMER_03613 [Parabacteroides merdae ATCC 43184] gi|154085946|gb|EDN84991.1| hypothetical protein PARMER_03613 [Parabacteroides merdae ATCC 43184] Length = 148 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 9/143 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A + ++ L + + V + + + + ++S +F +I +N +Y D Sbjct: 4 AFYAEDTKLPAIKKRAVGNWVKEVAAT---YGKKVGDISYIFCSDEKILEVNRQYLQHDY 60 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F + S D S GD+ ++ + ++ + + L IIHG LHL G Sbjct: 61 YTDIITF--DYTSGDKIS----GDLFISLDTVKTNSEAFNTPYNEELHRTIIHGILHLCG 114 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 + + +ME E L L Sbjct: 115 INDKGPGERELMEANENKALAIL 137 >gi|209527916|ref|ZP_03276403.1| protein of unknown function UPF0054 [Arthrospira maxima CS-328] gi|209491636|gb|EDZ92004.1| protein of unknown function UPF0054 [Arthrospira maxima CS-328] Length = 152 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 17/142 (11%) Query: 10 RLDLQIAVENALW----GDEIHLRTLCEVVFA-----KAVSNLISK--GYFVKENIVELS 58 ++ L++ +E+ W G+ + L L E A + + Y ELS Sbjct: 7 KVQLEVNIEDNFWWGKEGESLRLGELAEKAIAPETWESWFCQWLQQLDPYLPPAKGYELS 66 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF------ASSDGCSSLMLGDIVLAYEIIE 112 L TD I+ N +YR +D+ T+VLSF A LGDI+++ E Sbjct: 67 LRLTDDREIQEFNAQYRQLDEATDVLSFAALETSLVMPAEHLSLHPCYLGDIIISVETAF 126 Query: 113 IEANVLGKEFENHLVHLIIHGF 134 +A G L L HG Sbjct: 127 RQAQQAGHNLTTELAWLTSHGL 148 >gi|328953968|ref|YP_004371302.1| metalloprotease ybeY [Desulfobacca acetoxidans DSM 11109] gi|328454292|gb|AEB10121.1| metalloprotease ybeY [Desulfobacca acetoxidans DSM 11109] Length = 128 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 1/109 (0%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELSL F + + LN TNV++ P +LGD++++ E + + Sbjct: 6 AELSLTFVNDPAMARLNRTIMQRRGTTNVIALPQQGGPFPEVQPQILGDVIISLETTQRQ 65 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV-MEGLERSILEDL 162 A G EF +IHG LHLLGYDH + A M + + L Sbjct: 66 AWQQGWEFAELFDLYLIHGILHLLGYDHETSEAAAQCMAVKTKELFLRL 114 >gi|78187213|ref|YP_375256.1| hypothetical protein Plut_1354 [Chlorobium luteolum DSM 273] gi|123582883|sp|Q3B368|RRMF_PELLD RecName: Full=Probable rRNA maturation factor gi|78167115|gb|ABB24213.1| Protein of unknown function UPF0054 [Chlorobium luteolum DSM 273] Length = 137 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L + + +AV +I + +E++ V+ S +N EY D PT+ +SFP Sbjct: 11 RKLDDALLCRAVETVIQGE---GRHALEIAAVYCGSRMSRRINREYLQHDWPTDTISFPY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 G + G+ + ++IE A +FE L + IH LHL GYD +D Sbjct: 68 ------GSGGNVEGEFYICLDVIEENARRFNTDFERELFRVTIHSVLHLAGYDDHLPEDR 121 Query: 149 CVMEGLERSILEDL 162 M E S L+ L Sbjct: 122 RRMTEREDSYLQQL 135 >gi|262383157|ref|ZP_06076294.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296035|gb|EEY83966.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 143 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A + ++I L + + + V + + ++S +F +I +N +Y D Sbjct: 4 AYYAEDIELPAIKKRAVSGWVKAV---AETYGKKTGDISYIFCSDEKILEVNRQYLQHDY 60 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F + GD+ ++ + + A ++ L IIHG LHL G Sbjct: 61 YTDIITFDYTEGNKIS------GDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCG 114 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 + + +ME E L L Sbjct: 115 INDKGPGEREIMEENENRALAIL 137 >gi|194246695|ref|YP_002004334.1| hypothetical protein ATP_00301 [Candidatus Phytoplasma mali] gi|254801600|sp|B3QZV1|RRMF_PHYMT RecName: Full=Probable rRNA maturation factor gi|193807052|emb|CAP18488.1| conserved hypothetical protein [Candidatus Phytoplasma mali] Length = 148 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 6/128 (4%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 K ++ ++ K +F + ++F +++ +NF YR D T+VLSF + Sbjct: 14 KYLTKILKKIFFFVPERQNIHIIFITPLKMKKMNFYYRQKDYDTDVLSF------INEID 67 Query: 98 SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 LGDI + + + ++ + L HG+LHL GY+H + M ++ Sbjct: 68 KDSLGDIFINLKKAQKQSQNYNHSLSREVCFLATHGYLHLKGYEHHSKDELKKMLIIQEK 127 Query: 158 ILEDLGIN 165 +L+ + ++ Sbjct: 128 MLKKVDLD 135 >gi|32473188|ref|NP_866182.1| hypothetical protein RB4579 [Rhodopirellula baltica SH 1] gi|46577385|sp|Q7USC9|RRMF_RHOBA RecName: Full=Probable rRNA maturation factor gi|32397867|emb|CAD73868.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 194 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 7/160 (4%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 + ++ D E + I+ + + + D I +N E Sbjct: 12 DVLIDEEAEPDLSIWFGCLETARTELAQAAIAAAAVEGCDRGSVGVRICDDATIHPINRE 71 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV--LGKEFENHLVHLII 131 + D PT+V+SFP ++ G++V ++E A+ L+ ++ Sbjct: 72 FLQHDYPTDVISFPYELE-----PPMVEGELVASFETAIENASEPSNPLSPREELLLYVV 126 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HG LH++G+D + M E + ++ +GI P D Sbjct: 127 HGTLHIVGHDDQSPEPRAAMRRAEIAAMKLIGIELPLSND 166 >gi|260591891|ref|ZP_05857349.1| putative metalloprotease [Prevotella veroralis F0319] gi|260536175|gb|EEX18792.1| putative metalloprotease [Prevotella veroralis F0319] Length = 143 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + ++ + + + + E+ +F D +I +N EY G D T++++ Sbjct: 9 VKMPKIRKRDTSRWIKAVAAT---YGRKVGEIGYMFVDDEKILEVNNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F ++ GD+V++ + + A + GK +E L +IIHG LHL G + Sbjct: 66 FDYDEGD------VLNGDLVISLDTVRSNAELFGKLYEEELFRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 120 GEREIMEENENKALALL 136 >gi|150024116|ref|YP_001294942.1| hypothetical protein FP0002 [Flavobacterium psychrophilum JIP02/86] gi|172048599|sp|A6GVJ9|RRMF_FLAPJ RecName: Full=Probable rRNA maturation factor gi|149770657|emb|CAL42121.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 140 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 9/136 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 EI E + VS++I ++ E++ +F D + + +N +Y D T+V+ Sbjct: 7 EIDFEIREETSYINWVSSVILSEN---KSEGEINYIFCDDNYLLEINQQYLNHDTLTDVI 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + + GDI ++ E + A+ FE L ++IHG LH GY Sbjct: 64 SFDYSLGDE------IHGDIYISIERVRENADDFKVPFEEELKRVMIHGVLHYCGYKDKS 117 Query: 145 DKDACVMEGLERSILE 160 D D +M E L+ Sbjct: 118 DADELLMRSKEDEKLK 133 >gi|327538122|gb|EGF24808.1| protein belonging to uncharacterized protein family UPF0054 [Rhodopirellula baltica WH47] Length = 193 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 7/160 (4%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 + ++ D E + I+ + + + + D I +N E Sbjct: 11 DVLIDEEAEPDLSIWFGCLETARTELAQAAIAAASVEECDRGSVGVRICDDATIHPINRE 70 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV--LGKEFENHLVHLII 131 + D PT+V+SFP ++ G++V ++E A+ L+ ++ Sbjct: 71 FLQHDYPTDVISFPYELE-----PPMVEGELVASFETAIENASEPSNPLSPREELLLYVV 125 Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 HG LH++G+D + M E + ++ +GI P D Sbjct: 126 HGTLHIVGHDDQSPEPRAAMRRAEIAAMKLIGIELPLSND 165 >gi|224536891|ref|ZP_03677430.1| hypothetical protein BACCELL_01767 [Bacteroides cellulosilyticus DSM 14838] gi|224521479|gb|EEF90584.1| hypothetical protein BACCELL_01767 [Bacteroides cellulosilyticus DSM 14838] Length = 136 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + K+ + E++ +F +I +N +Y D T++ Sbjct: 7 DGVEMPAIKKSQTTEWIKAVAAT---YKKRVGEIAYIFCSDEKILEVNRQYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + + GD+ ++ + + A G ++E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GNRLSGDLFISLDTVRTNAEQFGSDYETELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 GPGEREIMEAAENKALA 134 >gi|224437000|ref|ZP_03657981.1| putative metalloprotease [Helicobacter cinaedi CCUG 18818] gi|313143472|ref|ZP_07805665.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128503|gb|EFR46120.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 202 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 35/180 (19%) Query: 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 +P+L++ E++ + +E+ E + + + + KG F L +VF DS Sbjct: 10 PMPQLEID---ESSPYKNEL------EKLLLEIGNLGLIKGDFSH---CSLEVVFVDSKT 57 Query: 67 IETLNFEYRGIDKPTNVLSFPTA-------FASSDGCS--------------SLMLGDIV 105 + +N +RG T+VLSFP FA D +LG IV Sbjct: 58 MREINRTHRGKLSTTDVLSFPLECDFMACDFAEGDFMESDFDFSPLDSTAPFERLLGSIV 117 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + E+ + + + + L IHGFLH+LG+DH D LE+ I+E +G+ Sbjct: 118 INTELAKAMSESYNHTLIDEISLLFIHGFLHILGFDHEVDNGEQ--RALEQCIIESIGLK 175 >gi|158520794|ref|YP_001528664.1| hypothetical protein Dole_0777 [Desulfococcus oleovorans Hxd3] gi|158509620|gb|ABW66587.1| protein of unknown function UPF0054 [Desulfococcus oleovorans Hxd3] Length = 97 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 +N Y G PTNV++FP + + +LGD+V++ + EA +G E L Sbjct: 1 MNQVYLGRTGPTNVIAFPMQEGAFADLTPGLLGDVVISADTALREARSMGVSLEARFTEL 60 Query: 130 IIHGFLHLLGYDHV-DDKDACVMEGLERSILEDL 162 +IHG LHL GYDH D +A ME R +L+ L Sbjct: 61 LIHGILHLSGYDHEQSDTEAEKMEAKTRELLKML 94 >gi|301311742|ref|ZP_07217667.1| putative metalloprotease [Bacteroides sp. 20_3] gi|300830302|gb|EFK60947.1| putative metalloprotease [Bacteroides sp. 20_3] Length = 143 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A + ++I L + + + V + + ++S +F +I +N +Y D Sbjct: 4 AYYAEDIELPAIKKRAVSGWVKAV---AETYGKKTGDISYIFCSDEKILEVNRQYLQHDY 60 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F + GD+ ++ + + A ++ L IIHG LHL G Sbjct: 61 YTDIITFDYTEGNKIS------GDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCG 114 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 + + +ME E L L Sbjct: 115 INDKGPGEREIMEENENRALAIL 137 >gi|313886905|ref|ZP_07820608.1| translation metalloprotein YbeY [Porphyromonas asaccharolytica PR426713P-I] gi|312923602|gb|EFR34408.1| translation metalloprotein YbeY [Porphyromonas asaccharolytica PR426713P-I] Length = 175 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 2/107 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +TD I N + D T+V++FP S + GDI+++ + + A Sbjct: 38 EINFQYTDDEGILRANRAFLQHDYYTDVITFPRE--SEQEGDDAIYGDILISIDTVATNA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LG F+ L ++IHG LHLLG D D + +M E L L Sbjct: 96 QELGVPFQQELYRVMIHGILHLLGIDDQTDSERELMHMAEDRALMQL 142 >gi|332561271|ref|ZP_08415589.1| hypothetical protein RSWS8N_19539 [Rhodobacter sphaeroides WS8N] gi|332275069|gb|EGJ20385.1| hypothetical protein RSWS8N_19539 [Rhodobacter sphaeroides WS8N] Length = 160 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 19/165 (11%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E+ W +E+ L L ++ L L ++ D RI LN +R Sbjct: 2 IEDGRW-EELDLPALATRAAEATLAALDMPAEGFT-----LVVMGCDDARIAELNGAFRQ 55 Query: 77 IDKPTNVLSFPTAFASSDGCS-------------SLMLGDIVLAYEIIEIEANVLGKEFE 123 KPTNVLS+P+ +S+ LGD+ +A+E + EA GK Sbjct: 56 KGKPTNVLSWPSEERASEEPGVAPEPPEPGDPDDPEPLGDVAIAFETCQREAAEQGKPVT 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HL++HG LHLLGYDHV++ D +ME E IL LG+ DPY Sbjct: 116 DHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLGVPDPY 160 >gi|150009548|ref|YP_001304291.1| hypothetical protein BDI_2961 [Parabacteroides distasonis ATCC 8503] gi|255013159|ref|ZP_05285285.1| hypothetical protein B2_04585 [Bacteroides sp. 2_1_7] gi|166228935|sp|A6LG55|RRMF_PARD8 RecName: Full=Probable rRNA maturation factor gi|149937972|gb|ABR44669.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 142 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A + ++I L + + + + + + ++S +F +I +N +Y D Sbjct: 4 AYYAEDIQLPAIKKKAVSGWIKAV---AETYGKKTGDISYIFCSDEKILEVNRQYLQHDY 60 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F + GD+ ++ + + A ++ L IIHG LHL G Sbjct: 61 YTDIITFDYTEGNKIS------GDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCG 114 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 + + +ME E L L Sbjct: 115 INDKGPGEREIMEENENRALAIL 137 >gi|282858743|ref|ZP_06267896.1| metalloprotein, YbeY/ UPF0054 family [Prevotella bivia JCVIHMP010] gi|282588492|gb|EFB93644.1| metalloprotein, YbeY/ UPF0054 family [Prevotella bivia JCVIHMP010] Length = 144 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 9/132 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + +K + + F ++ +F D +I +N EY G D T++++ Sbjct: 9 VKMPKIKKRLISKWIKAVAKSHGF---KTGDIGYMFVDDEKILEVNNEYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+V++ + + A + K +E+ L +IIHG LHL G + Sbjct: 66 FDYDEDDTIS------GDLVISLDTVRTNAELFHKTYEDELERVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERS 157 + +ME E Sbjct: 120 GEREIMEDNENK 131 >gi|298373953|ref|ZP_06983911.1| metalloprotease [Bacteroides sp. 3_1_19] gi|298268321|gb|EFI09976.1| metalloprotease [Bacteroides sp. 3_1_19] Length = 142 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A + ++I L + + + + + + ++S +F +I +N +Y D Sbjct: 4 AYYAEDIQLPAIKKKAVSGWIKAV---AETYGKKTGDISYIFCSDEKILEVNRQYLQHDY 60 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F + GD+ ++ + + A ++ L IIHG LHL G Sbjct: 61 YTDIITFDYTEGNKIS------GDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCG 114 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 + + +ME E L L Sbjct: 115 INDKGPGEREIMEENENRALAIL 137 >gi|221369606|ref|YP_002520702.1| metalloprotease RHOS4_36330 [Rhodobacter sphaeroides KD131] gi|221162658|gb|ACM03629.1| metalloprotease RHOS4_36330 [Rhodobacter sphaeroides KD131] Length = 160 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 19/165 (11%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 +E+ W +E+ L L ++ L L ++ D RI LN +R Sbjct: 2 IEDGRW-EELDLPALATRAAEATLAALDIPAEGFT-----LVVMGCDDARIAELNGAFRQ 55 Query: 77 IDKPTNVLSFPTAFASSDGCS-------------SLMLGDIVLAYEIIEIEANVLGKEFE 123 KPTNVLS+P+ +S+ LGD+ +A+E + EA GK Sbjct: 56 KGKPTNVLSWPSEERASEEPGVAPEPPEPGDPEDPEPLGDVAIAFETCQREAAEQGKPVA 115 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 +H+ HL++HG LHLLGYDHV++ D +ME E IL LG+ DPY Sbjct: 116 DHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLGVPDPY 160 >gi|160882931|ref|ZP_02063934.1| hypothetical protein BACOVA_00893 [Bacteroides ovatus ATCC 8483] gi|260172638|ref|ZP_05759050.1| hypothetical protein BacD2_12296 [Bacteroides sp. D2] gi|315920928|ref|ZP_07917168.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156111614|gb|EDO13359.1| hypothetical protein BACOVA_00893 [Bacteroides ovatus ATCC 8483] gi|313694803|gb|EFS31638.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 138 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 6/111 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F +I +N +Y D T++++F + GD+ ++ + I Sbjct: 33 KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDYCEGD------RLSGDLFISLDTI 86 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 A G +E+ L +IIHG LHL G + + VME E L L Sbjct: 87 RTNAEQFGASYEDELHRVIIHGILHLCGINDKGPGEREVMEAAENKALGML 137 >gi|332300776|ref|YP_004442697.1| metalloprotease ybeY [Porphyromonas asaccharolytica DSM 20707] gi|332177839|gb|AEE13529.1| metalloprotease ybeY [Porphyromonas asaccharolytica DSM 20707] Length = 175 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +TD I N + D T+V++FP S ++ GDI+++ + + A Sbjct: 38 EINFQYTDDEGILRANRAFLQHDYYTDVITFPRE--SEQEGDDVIYGDILISIDTVATNA 95 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LG F+ L ++IHG LHLLG D D + +M E L L Sbjct: 96 QELGVPFQQELYRVMIHGILHLLGIDDQTDSERELMHMAEDRALMQL 142 >gi|256838280|ref|ZP_05543790.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739199|gb|EEU52523.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 142 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A + ++I L + + + V + + ++S +F +I +N +Y D Sbjct: 4 AYYAEDIELPAIKKRAVSGWVKAV---AETYGKKTGDISYIFCSDEKILEVNRQYLQHDY 60 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F + GD+ ++ + + A ++ L IIHG LHL G Sbjct: 61 YTDIITFDYTEGNKIS------GDLFISLDTVRTNAETFHTDYNEELHRTIIHGILHLCG 114 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 + + +ME E L L Sbjct: 115 INDKGPGEREIMEENENRALAIL 137 >gi|213161076|ref|ZP_03346786.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 78 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 32/73 (43%), Positives = 47/73 (64%) Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSI 158 +LGD+++ +++E EA K E H H+++HG LHLLGYDH+DD +A ME LE I Sbjct: 2 PLLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEI 61 Query: 159 LEDLGINDPYEVD 171 + +G DPY + Sbjct: 62 MLAMGYEDPYIAE 74 >gi|88855036|ref|ZP_01129701.1| hypothetical protein A20C1_04121 [marine actinobacterium PHSC20C1] gi|88815564|gb|EAR25421.1| hypothetical protein A20C1_04121 [marine actinobacterium PHSC20C1] Length = 153 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 16/159 (10%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+A+ DE + LC + EL +VF D +E L Sbjct: 1 MSIEINNESAVEVDEHAFQRLCTFALDQ----------LHVHPDAELGIVFVDEAAMEQL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP + +LGDIV+ ++ +A G + Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGTEDRQTPAGLLGDIVVCPQVAISQAETAGHPPLEEM 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L HG LHLLG+DH + ++ M GL+R IL LG Sbjct: 111 LLLTTHGLLHLLGFDHAEPEEEKEMFGLQREIL--LGFA 147 >gi|317152962|ref|YP_004121010.1| hypothetical protein Daes_1250 [Desulfovibrio aespoeensis Aspo-2] gi|316943213|gb|ADU62264.1| protein of unknown function UPF0054 [Desulfovibrio aespoeensis Aspo-2] Length = 162 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 21/151 (13%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D++I E L D R V + +L +G L L D I LN Sbjct: 4 DIRILRETRLEPDFPLSRQELVRVVETILDSLGLEG-------AALELTLVDDREIARLN 56 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSS--------------LMLGDIVLAYEIIEIEANV 117 E+ G PTN+LSFP S LG++ L+ + + EA++ Sbjct: 57 REFMGCPGPTNILSFPAFERSGPDSGPDVDPDSGPDSGTMAEYLGELALSVDTLAREAHL 116 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 G+ HL L+ HG LHL G+DH ++ DA Sbjct: 117 YGQPPRVHLARLLAHGILHLAGHDHGEEMDA 147 >gi|224023519|ref|ZP_03641885.1| hypothetical protein BACCOPRO_00221 [Bacteroides coprophilus DSM 18228] gi|224016741|gb|EEF74753.1| hypothetical protein BACCOPRO_00221 [Bacteroides coprophilus DSM 18228] Length = 140 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 9 VDMPAIKKRETSAWIKAV---AETYGKKVGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + + A G +E L +IIHG LHL G + Sbjct: 66 FDYCEGNRIS------GDLFISLDTVRTNAEQFGATYETELHRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L+ L Sbjct: 120 GEREIMEAAENRALDML 136 >gi|258648907|ref|ZP_05736376.1| putative metalloprotease [Prevotella tannerae ATCC 51259] gi|260850939|gb|EEX70808.1| putative metalloprotease [Prevotella tannerae ATCC 51259] Length = 139 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 6/109 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F D +I +N +Y D T++++F +++ GD+ ++ + + Sbjct: 32 KEVGEIAYIFCDDEKILEVNQQYLNHDYYTDIITFDYTE------GNVLSGDLFISLDTV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 A + L +IIHG LHL G + + +ME E L Sbjct: 86 RTNAEQRQISYREELDRVIIHGILHLCGINDKGPGERQLMEAAENKALN 134 >gi|77465599|ref|YP_355102.1| hypothetical protein RSP_3598 [Rhodobacter sphaeroides 2.4.1] gi|126464038|ref|YP_001045151.1| hypothetical protein Rsph17029_3283 [Rhodobacter sphaeroides ATCC 17029] gi|123590065|sp|Q3IW83|RRMF_RHOS4 RecName: Full=Probable rRNA maturation factor gi|77390017|gb|ABA81201.1| Protein of unknown function UPF0054 [Rhodobacter sphaeroides 2.4.1] gi|126105849|gb|ABN78379.1| protein of unknown function UPF0054 [Rhodobacter sphaeroides ATCC 17029] Length = 167 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 19/169 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 ++ +E+ W +E+ L L ++ L L ++ D RI LN Sbjct: 5 VETVIEDGRW-EELDLPALATRAAEATLAALDMPAEGFT-----LVVMGCDDARIAELNG 58 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCS-------------SLMLGDIVLAYEIIEIEANVLG 119 +R KPTNVLS+P+ +S+ LGD+ +A+E + EA G Sbjct: 59 AFRQKGKPTNVLSWPSEERASEEPGMAPEPPEPGDPEDPEPLGDVAIAFETCQREAAEQG 118 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 K +H+ HL++HG LHLLGYDHV++ D +ME E IL LG+ DPY Sbjct: 119 KPVTDHVTHLLVHGVLHLLGYDHVEEADGDLMEATETRILAGLGVPDPY 167 >gi|254880983|ref|ZP_05253693.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319639991|ref|ZP_07994718.1| metalloprotease [Bacteroides sp. 3_1_40A] gi|254833776|gb|EET14085.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388269|gb|EFV69121.1| metalloprotease [Bacteroides sp. 3_1_40A] Length = 138 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 6/113 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F +I +N +Y D T++++F GD+ ++ + + Sbjct: 32 KRVGEIAYIFCSDDKILEVNRQYLQHDYYTDIITFDYCEGDRIS------GDLFISLDTV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A + ++ L +IIHG LHL G + + +ME E L + + Sbjct: 86 RSNAEQFEQPYDRELHRVIIHGILHLCGINDKGPGEREIMEAAENKALALISL 138 >gi|261878861|ref|ZP_06005288.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334540|gb|EFA45326.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 143 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L ++ + + + + + + +F D +I +N +Y G D T++++ Sbjct: 9 VELPSIKHRETTAWIKAVAAT---YGKRVGSIGYMFVDDKKILEVNNQYLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F ++ GD+V++ + + A + GK++ + L +IIHG LHL G + Sbjct: 66 FDYDDGD------VINGDLVISLDTVRSNAELFGKDYADELNRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 120 GEREIMEAHEEKALALL 136 >gi|148270413|ref|YP_001244873.1| hypothetical protein Tpet_1283 [Thermotoga petrophila RKU-1] gi|281412720|ref|YP_003346799.1| protein of unknown function UPF0054 [Thermotoga naphthophila RKU-10] gi|166200326|sp|A5IM74|RRMF_THEP1 RecName: Full=Probable rRNA maturation factor gi|147735957|gb|ABQ47297.1| protein of unknown function UPF0054 [Thermotoga petrophila RKU-1] gi|281373823|gb|ADA67385.1| protein of unknown function UPF0054 [Thermotoga naphthophila RKU-10] Length = 150 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + V + + + V ++++ I+ LN ++R D+PT+VL+F Sbjct: 13 LLEDVKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRSHDQPTDVLTFLLMEED--- 69 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGL 154 + G+I + I+E A FE L+ ++IHG LHL GYDH +D+ + M Sbjct: 70 ----VYGEIYVCPMIVEENAKEFSNTFEKELLEVVIHGILHLAGYDHEFEDRKSKEMFEK 125 Query: 155 ERSILED 161 ++ +E+ Sbjct: 126 QKKYVEE 132 >gi|298483806|ref|ZP_07001978.1| metalloprotease [Bacteroides sp. D22] gi|298269993|gb|EFI11582.1| metalloprotease [Bacteroides sp. D22] Length = 139 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 9/134 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKAVAAS---YGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +EN L +IIHG LHL G + Sbjct: 67 FDYCEGD------RLSGDLFISLDTIRTNAEQFGTSYENELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSIL 159 + +MEG E L Sbjct: 121 GEREIMEGAENKAL 134 >gi|299145303|ref|ZP_07038371.1| putative metalloprotease [Bacteroides sp. 3_1_23] gi|298515794|gb|EFI39675.1| putative metalloprotease [Bacteroides sp. 3_1_23] Length = 139 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F +I +N +Y D T++++F + GD+ ++ + I Sbjct: 33 KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDYCEGD------RLSGDLFISLDTI 86 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +E+ L +IIHG LHL G + + VME E L Sbjct: 87 RTNAEQFGASYEDELHRVIIHGILHLCGINDKGPGEREVMEAAENQAL 134 >gi|308177462|ref|YP_003916868.1| metalloprotease [Arthrobacter arilaitensis Re117] gi|307744925|emb|CBT75897.1| putative metalloprotease [Arthrobacter arilaitensis Re117] Length = 157 Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 15/165 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E D + L E V + E+S+VF D + L Sbjct: 1 MSIEVNNETDYEVDLKDVNALAESVLQAMFLH----------PETEVSVVFIDEDAMSAL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + E+ ++ PT+V+SFP + +LGDIV+ I E +A G + + Sbjct: 51 HVEWMDLEGPTDVMSFPMDELRPGTAGAPGENGILGDIVICPSIAEAQAKAGGHSTHDEI 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL-GINDPYEV 170 + L HG LHL+G+DH++ + M GL+R +LE G P E Sbjct: 111 LLLTTHGLLHLMGFDHMEPAEKEEMFGLQRQLLESYTGRPAPKET 155 >gi|325299508|ref|YP_004259425.1| metalloprotease ybeY [Bacteroides salanitronis DSM 18170] gi|324319061|gb|ADY36952.1| metalloprotease ybeY [Bacteroides salanitronis DSM 18170] Length = 140 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 12/135 (8%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 +R + KAV+ + + E++ +F +I +N +Y D T++++F Sbjct: 14 IRKRETTEWVKAVAQT------YGKKVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFD 67 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + + + GD+ ++ + + A ++ L +IIHG LHL G + + Sbjct: 68 YSE------GNRIAGDLFISLDTVRTNAEQFNAPYDTELHRVIIHGILHLCGINDKGPGE 121 Query: 148 ACVMEGLERSILEDL 162 +ME E L L Sbjct: 122 REIMEAAENKALALL 136 >gi|156391269|ref|XP_001635691.1| predicted protein [Nematostella vectensis] gi|156222787|gb|EDO43628.1| predicted protein [Nematostella vectensis] Length = 169 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 E + + L+ +K + ++S+V RI++LN +YR + T+VL+FP Sbjct: 14 FSEALLERDARVLVQ---LLKADRFDVSIVCAGGKRIKSLNLKYRRRNVQTDVLAFPYFE 70 Query: 91 ASSDGCSSLM-------LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 G LGD++L +I + K + +L LI HG HLLGY H Sbjct: 71 NMKPGVLPNPKLQDDWNLGDVILGMPVIHQDCQEDNKSVQEYLPVLITHGLCHLLGYTHD 130 Query: 144 DDKDACVMEGLERSILEDLG 163 +++ M E+ +L Sbjct: 131 TEQNLQQMHKKEKEVLSGFN 150 >gi|153807201|ref|ZP_01959869.1| hypothetical protein BACCAC_01479 [Bacteroides caccae ATCC 43185] gi|149130321|gb|EDM21531.1| hypothetical protein BACCAC_01479 [Bacteroides caccae ATCC 43185] Length = 138 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 IKMPEIKKRETTEWIKAVAAS---YGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + + A G ++N L +IIHG LHL G + Sbjct: 67 FDYCEGD------RLSGDLFISLDTVRTNAEQFGASYDNELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 121 GEREIMEAAENKALAML 137 >gi|104162024|emb|CAJ75732.1| predicted metal-dependent hydrolaseinG [uncultured Thermotogales bacterium] Length = 121 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 7/111 (6%) Query: 47 GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVL 106 +I L+++ TD IE +N E+R ++PT+VLSF G +GDIV+ Sbjct: 7 AELGDRDIGTLNILLTDDSEIERINKEFRHKNEPTDVLSFQY------GLEEETIGDIVI 60 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLER 156 + + I +A FE L +++IHG LH++GY H D + + L+R Sbjct: 61 SLDRISEQAAEFDNSFEEELYYILIHGVLHVIGYTHHGYDDEGEEIFDLQR 111 >gi|261211995|ref|ZP_05926281.1| predicted metal-dependent hydrolase [Vibrio sp. RC341] gi|260838603|gb|EEX65254.1| predicted metal-dependent hydrolase [Vibrio sp. RC341] Length = 78 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 49/76 (64%) Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +LGD+V+ +++E EA K + H H+++HG LHLLGYDH++D +A ME LE Sbjct: 1 MEMDLLGDLVICRQVVEHEAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLE 60 Query: 156 RSILEDLGINDPYEVD 171 I++++G DPY + Sbjct: 61 TEIMQEMGFTDPYLAE 76 >gi|146298765|ref|YP_001193356.1| hypothetical protein Fjoh_1004 [Flavobacterium johnsoniae UW101] gi|189038538|sp|A5FL87|RRMF_FLAJ1 RecName: Full=Probable rRNA maturation factor gi|146153183|gb|ABQ04037.1| protein of unknown function UPF0054 [Flavobacterium johnsoniae UW101] Length = 139 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E E F +S +I ++N E++ +F D + +N EY D T+++ Sbjct: 7 ETEFSLDNEQAFTDWLSAVIVSE---EKNEGEINYIFCDDEYLHKINVEYLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + GDI ++ E +E A FE L ++ HG LH GY Sbjct: 64 SFDYTVGNEIS------GDIFVSVERVEDNAKDFNVSFEEELKRVLAHGILHYCGYKDKS 117 Query: 145 DKDACVMEGLERS 157 D DA +M E Sbjct: 118 DADAELMRSKEDE 130 >gi|32266731|ref|NP_860763.1| putative metalloprotease [Helicobacter hepaticus ATCC 51449] gi|46577395|sp|Q7VGT8|RRMF_HELHP RecName: Full=Probable rRNA maturation factor gi|32262782|gb|AAP77829.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 163 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 8/115 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM------LGDIVLAYEI 110 L ++ DS + +NF +R + T+VLSFP + L LG +V+ YE+ Sbjct: 42 LEVLAVDSQNMREINFAHRAKNSTTDVLSFPLDVSEGADSHILAKQMKICLGSVVINYEL 101 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + A G ++ + L IHGFLH+LGYDH D LE+ I+E LG+ Sbjct: 102 AQKVAKQRGHSTQDEISLLFIHGFLHILGYDHEVDNGEQ--RALEQKIIESLGLK 154 >gi|332828365|gb|EGK01074.1| metalloprotease [Dysgonomonas gadei ATCC BAA-286] Length = 139 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 61/140 (43%), Gaps = 9/140 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 +E+ L ++ + + ++ + K+ + ++S +F +I +N +Y D T+ Sbjct: 7 AEEVKLPSIKKRETTSWIKSVAAS---YKKRVGDISFIFCSDKKILEINNQYLQHDYYTD 63 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +++F + GDI ++ + ++ A + + +IIHG LHL G + Sbjct: 64 IITFDYTEGETIS------GDIFISLDTVKSNAEKFETNYNEEIHRIIIHGILHLCGIND 117 Query: 143 VDDKDACVMEGLERSILEDL 162 + M G E L+ L Sbjct: 118 KGPGEREFMTGCENKALKML 137 >gi|237720597|ref|ZP_04551078.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229450348|gb|EEO56139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 139 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 9/134 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKAVAAS---YGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +E+ L +IIHG LHL G + Sbjct: 67 FDYCEGD------RLSGDLFISLDTIRTNAEQFGASYEDELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSIL 159 + VME E L Sbjct: 121 GEREVMEAAENQAL 134 >gi|150003785|ref|YP_001298529.1| hypothetical protein BVU_1217 [Bacteroides vulgatus ATCC 8482] gi|294777391|ref|ZP_06742842.1| metalloprotein, YbeY family [Bacteroides vulgatus PC510] gi|172048643|sp|A6KZP3|RRMF_BACV8 RecName: Full=Probable rRNA maturation factor gi|149932209|gb|ABR38907.1| conserved hypothetical protein with conserved domain [Bacteroides vulgatus ATCC 8482] gi|294448459|gb|EFG17008.1| metalloprotein, YbeY family [Bacteroides vulgatus PC510] Length = 138 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 6/113 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F +I +N +Y D T++++F GD+ ++ + + Sbjct: 32 KRVGEIAYIFCSDDKILEVNRQYLQHDYYTDIITFDYCEGDRIS------GDLFISLDTV 85 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 A + ++ L +IIHG LHL G + + +ME E L + + Sbjct: 86 RSNAEQFEQPYDRELHRVIIHGILHLCGINDKGPGEREIMEAAENKALALISL 138 >gi|126662720|ref|ZP_01733719.1| hypothetical protein FBBAL38_05175 [Flavobacteria bacterium BAL38] gi|126626099|gb|EAZ96788.1| hypothetical protein FBBAL38_05175 [Flavobacteria bacterium BAL38] Length = 139 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 9/138 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E E + +S +I F + E++ +F + + +N EY D T+++ Sbjct: 7 ETDFLLENEEQYEVWISRIIESEGF---DEGEINYIFCNDEYLHKINVEYLDHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF +L+ GDI ++ E ++ AN F+ L ++ HG LH GY Sbjct: 64 SFDYT------VGNLVQGDIFISIERVQDNANDFNVSFDEELKRVLSHGVLHYCGYKDKT 117 Query: 145 DKDACVMEGLERSILEDL 162 KD +M E ++ Sbjct: 118 PKDEALMRSKEEEKMQMF 135 >gi|237716840|ref|ZP_04547321.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405610|ref|ZP_06082160.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229442823|gb|EEO48614.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356485|gb|EEZ05575.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|295086058|emb|CBK67581.1| conserved hypothetical protein TIGR00043 [Bacteroides xylanisolvens XB1A] Length = 139 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 9/134 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKAVAAS---YGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +E+ L +IIHG LHL G + Sbjct: 67 FDYCEGD------RLSGDLFISLDTIHTNAEQFGTSYEDELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSIL 159 + +MEG E L Sbjct: 121 GEREIMEGAENKAL 134 >gi|256372050|ref|YP_003109874.1| protein of unknown function UPF0054 [Acidimicrobium ferrooxidans DSM 10331] gi|256008634|gb|ACU54201.1| protein of unknown function UPF0054 [Acidimicrobium ferrooxidans DSM 10331] Length = 181 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 17/138 (12%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 +E + E + A+ + +++ + ELS+VF D+ I +LN YRG PT+ Sbjct: 14 ANEQSAVEIHEAMVARLATEVLTA--LGVHGVSELSVVFVDAETIASLNARYRGRVGPTD 71 Query: 83 VLSFPTAFASSDGCS---------SLMLGDIVLAYEIIEIEANVLGK------EFENHLV 127 VLSF D +LGD+V+ E+ A + + Sbjct: 72 VLSFAIDDVGDDASEHRPSTASGLPTLLGDVVICPEVARTNAPEHRGDRGHDGSVGDEVA 131 Query: 128 HLIIHGFLHLLGYDHVDD 145 L+IHG LH+ G+DH D Sbjct: 132 LLLIHGILHIRGWDHEAD 149 >gi|294675104|ref|YP_003575720.1| hypothetical protein PRU_2470 [Prevotella ruminicola 23] gi|294471648|gb|ADE81037.1| conserved hypothetical protein TIGR00043 [Prevotella ruminicola 23] Length = 140 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + E+ +F + +I +N ++ G D T++++ Sbjct: 9 VKFPNIKKRETTSWIRQVAAS---YGKKVGEIGYLFVNDEKILEVNNQFLGHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GDI ++ + + A+ G+ ++ L +IIHG LHL G + Sbjct: 66 FDYCEGKTIS------GDIYISVDTVFTNADKFGRPYDEELHRVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSILEDL 162 + +ME E L L Sbjct: 120 GEREIMEAAEDKALALL 136 >gi|189460233|ref|ZP_03009018.1| hypothetical protein BACCOP_00870 [Bacteroides coprocola DSM 17136] gi|189433094|gb|EDV02079.1| hypothetical protein BACCOP_00870 [Bacteroides coprocola DSM 17136] Length = 140 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 12/135 (8%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 ++ + KAV+ + + E++ +F +I +N +Y D T++++F Sbjct: 14 IKKRETTAWIKAVAET------YGKKVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFD 67 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + + GD+ ++ + + A G +E L +IIHG LHL G + + Sbjct: 68 YCE------GNRIAGDLFISLDTVRTNAEQFGATYETELHRVIIHGILHLCGINDKGPGE 121 Query: 148 ACVMEGLERSILEDL 162 +ME E L+ L Sbjct: 122 REIMEAAENKALDLL 136 >gi|325123553|gb|ADY83076.1| hypothetical protein BDGL_002490 [Acinetobacter calcoaceticus PHEA-2] Length = 158 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 12/164 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D + L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLR--HVGYKEDCEIGVACVDLDESQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHV---DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH +D + GLE IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEME--GLEIEILAKLNIANPYQ 157 >gi|295105853|emb|CBL03396.1| conserved hypothetical protein TIGR00043 [Gordonibacter pamelaeae 7-10-1-b] Length = 155 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 18/160 (11%) Query: 11 LDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+QI + +++ L L + V A+ K E+S+ F I Sbjct: 1 MDIQINYDYRKDELEKLPLHELAQFVLARE----------DKPFNTEVSVSFVTDEAIAE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDIVLAYEIIEIEANVLGKEF 122 LN YR + PT+VLSF + D LGD+++A ++ + G F Sbjct: 51 LNERYRHKEGPTDVLSFECDGVNDDLSAMTLAEDPVYELGDVIIAPDVAARQTREFGTSF 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E + L++HG LHL GYDH+ D +A VME E ILE Sbjct: 111 EEEISLLLVHGLLHLCGYDHIADDEAEVMEKREAEILEAW 150 >gi|225851483|ref|YP_002731717.1| hypothetical protein PERMA_1963 [Persephonella marina EX-H1] gi|254801505|sp|C0QSS1|RRMF_PERMH RecName: Full=Probable rRNA maturation factor gi|225645941|gb|ACO04127.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 153 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 27/150 (18%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ R++ + +AV ++ + + VE+S+ TD I+ +N ++RG DKPT+VL Sbjct: 9 ELGDRSITKKFVKEAVEKILE---HLNIDNVEISITLTDDSTIKEINRQWRGKDKPTDVL 65 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH-----------LIIHG 133 SFP +LGD+V++ + +A +G + ++ Sbjct: 66 SFPIDEKPP-KYRYRILGDVVISLPYAKKQAEEIGLPYREEIIRLLIHGILHLLG----- 119 Query: 134 FLHLLGYDHV-DDKDACVMEGLERSILEDL 162 YDH +K+A VM L+ I E++ Sbjct: 120 ------YDHERSEKEAQVMFSLQDEIFENI 143 >gi|184159547|ref|YP_001847886.1| metal-dependent hydrolase [Acinetobacter baumannii ACICU] gi|239504223|ref|ZP_04663533.1| metal-dependent hydrolase [Acinetobacter baumannii AB900] gi|260557078|ref|ZP_05829295.1| metal-dependent hydrolase [Acinetobacter baumannii ATCC 19606] gi|332873008|ref|ZP_08440967.1| translation metalloprotein YbeY [Acinetobacter baumannii 6014059] gi|238685532|sp|A3M934|RRMF_ACIBT RecName: Full=Probable rRNA maturation factor gi|238691001|sp|B2HZ57|RRMF_ACIBC RecName: Full=Probable rRNA maturation factor gi|183211141|gb|ACC58539.1| predicted metal-dependent hydrolase [Acinetobacter baumannii ACICU] gi|193078437|gb|ABO13428.2| hypothetical protein A1S_3031 [Acinetobacter baumannii ATCC 17978] gi|260409684|gb|EEX02985.1| metal-dependent hydrolase [Acinetobacter baumannii ATCC 19606] gi|322509457|gb|ADX04911.1| metal-dependent hydrolase [Acinetobacter baumannii 1656-2] gi|323519478|gb|ADX93859.1| metal-dependent hydrolase [Acinetobacter baumannii TCDC-AB0715] gi|332738790|gb|EGJ69658.1| translation metalloprotein YbeY [Acinetobacter baumannii 6014059] Length = 158 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLR--HVGYKEDCEIGIACVDLEESHQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHV---DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH +D + GLE IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEME--GLEIEILAKLNIANPYQ 157 >gi|257791393|ref|YP_003181999.1| hypothetical protein Elen_1642 [Eggerthella lenta DSM 2243] gi|317490531|ref|ZP_07949009.1| hypothetical protein HMPREF1023_02709 [Eggerthella sp. 1_3_56FAA] gi|325831379|ref|ZP_08164633.1| translation metalloprotein YbeY [Eggerthella sp. HGA1] gi|257475290|gb|ACV55610.1| protein of unknown function UPF0054 [Eggerthella lenta DSM 2243] gi|316910382|gb|EFV32013.1| hypothetical protein HMPREF1023_02709 [Eggerthella sp. 1_3_56FAA] gi|325486633|gb|EGC89081.1| translation metalloprotein YbeY [Eggerthella sp. HGA1] Length = 153 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 18/160 (11%) Query: 11 LDLQIAVENALWGDE-IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+QI + E + L L + V A+ K E+S+ F I Sbjct: 1 MDIQINYDYRKEDLEKLPLHELTQFVLARE----------DKPFNTEVSISFVTDEAIAE 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSD-------GCSSLMLGDIVLAYEIIEIEANVLGKEF 122 LN YR + PT+VLSF D LGD+V+A ++ + G F Sbjct: 51 LNERYRHKEGPTDVLSFECDGVDDDLSAMTLAEDPVYELGDVVIAPDVASRQTREFGTTF 110 Query: 123 ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E + L++HG LHL GYDH++D +A VME E ILE Sbjct: 111 EEEISLLLVHGLLHLCGYDHIEDDEAEVMEKREAEILEAW 150 >gi|86134802|ref|ZP_01053384.1| uncharacterized protein family UPF0054 [Polaribacter sp. MED152] gi|85821665|gb|EAQ42812.1| uncharacterized protein family UPF0054 [Polaribacter sp. MED152] Length = 137 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 11/142 (7%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E E ++ + S+ F + E++ +F D + LN ++ D T+++ Sbjct: 7 ETDFILEDETSLKNWINAVASQQEF---EVGEINYIFCDDAYLHKLNVKFLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + L+ GDI ++ E ++ A+ F L ++IHG LH +GY Sbjct: 64 SF------DNSLGKLLNGDIFISVERVKDNADDFKVSFHEELHRVMIHGILHYMGYKDKS 117 Query: 145 DKDACVMEGLERSILEDLGIND 166 + + M E L L +++ Sbjct: 118 EDEKKEMRKQEN--LAILKLSN 137 >gi|115380060|ref|ZP_01467104.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|310822820|ref|YP_003955178.1| hypothetical protein STAUR_5586 [Stigmatella aurantiaca DW4/3-1] gi|115362935|gb|EAU62126.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1] gi|309395892|gb|ADO73351.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 282 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 22/120 (18%) Query: 55 VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114 ELSL I LN +R DK T+VLSFP LGD+V++ + + + Sbjct: 159 CELSLSLVGDRAIRRLNRTWRKKDKATDVLSFPAGELPKGTPGPRQLGDVVISIDTAKRQ 218 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-----------DACVMEGLERSILEDLG 163 A G+ E+ + + DA M LE +L + G Sbjct: 219 AKEYGRTMESEMARYLA-----------HGLLHLLGHDHERTYDARKMATLEEKLLGERG 267 >gi|53711447|ref|YP_097439.1| hypothetical protein BF0156 [Bacteroides fragilis YCH46] gi|60679714|ref|YP_209858.1| hypothetical protein BF0118 [Bacteroides fragilis NCTC 9343] gi|253564495|ref|ZP_04841952.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764843|ref|ZP_06093118.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|62901265|sp|Q650C1|RRMF_BACFR RecName: Full=Probable rRNA maturation factor gi|81317213|sp|Q5LIY0|RRMF_BACFN RecName: Full=Probable rRNA maturation factor gi|52214312|dbj|BAD46905.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491148|emb|CAH05896.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251948271|gb|EES88553.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263254227|gb|EEZ25661.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301161178|emb|CBW20716.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 139 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 12/134 (8%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 ++ + KAV+ ++ I E++ +F +I +N +Y D T++++F Sbjct: 14 DIKKRETTEWIKAVAAT------YEKRIGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF 67 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + + GD+ ++ E ++ + +E L IIHG LHL G + Sbjct: 68 DYCE------GNRLSGDLFISLETVKTNSEQFNTPYEEELHRTIIHGILHLCGINDKGPG 121 Query: 147 DACVMEGLERSILE 160 + +ME E L Sbjct: 122 EREIMEAAENKALA 135 >gi|312890776|ref|ZP_07750306.1| protein of unknown function UPF0054 [Mucilaginibacter paludis DSM 18603] gi|311296739|gb|EFQ73878.1| protein of unknown function UPF0054 [Mucilaginibacter paludis DSM 18603] Length = 142 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 10/145 (6%) Query: 21 LWGDEIHLRTLCEVVFAKAV-SNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + ++I + + + + +I++GY +K EL+ +F + LN +Y D Sbjct: 7 FFEEDIQFKPKNKTRLRDWIKAAVIAEGYKLK----ELNYIFCSDRYLIELNQQYLNHDT 62 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F + + +++GDI ++ E I+ A++ L +IIHG LHLLG Sbjct: 63 YTDIITFDNSESE-----GIVIGDIFISVERIKENASLFSVSEAEELHRVIIHGVLHLLG 117 Query: 140 YDHVDDKDACVMEGLERSILEDLGI 164 Y D +M E L L + Sbjct: 118 YKDKTKSDKALMTSKENLYLSQLSV 142 >gi|34540326|ref|NP_904805.1| hypothetical protein PG0510 [Porphyromonas gingivalis W83] gi|62901349|sp|Q7MWS9|RRMF_PORGI RecName: Full=Probable rRNA maturation factor gi|34396638|gb|AAQ65704.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 151 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 9/142 (6%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + + + L + + K ++ + S+ + + E+S +F D I N E+ D Sbjct: 6 FYAEGVSLPRIRRRIVGKWIAEVCSR---YGKAVGEISYLFCDDEYILKANQEFLDHDYY 62 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T++++F + A + + GD++++ + + A L +E+ L +IIHG LHL G Sbjct: 63 TDIITFDSCEADT------VNGDLLISLDTVRSNARALDLRYEDELHRVIIHGILHLCGL 116 Query: 141 DHVDDKDACVMEGLERSILEDL 162 KD M E L L Sbjct: 117 KDKSKKDEAQMRAAEEKALVML 138 >gi|119511142|ref|ZP_01630260.1| hypothetical protein N9414_17021 [Nodularia spumigena CCY9414] gi|119513512|ref|ZP_01632533.1| hypothetical protein N9414_11289 [Nodularia spumigena CCY9414] gi|119461828|gb|EAW42844.1| hypothetical protein N9414_11289 [Nodularia spumigena CCY9414] gi|119464237|gb|EAW45156.1| hypothetical protein N9414_17021 [Nodularia spumigena CCY9414] Length = 175 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 68/159 (42%), Gaps = 17/159 (10%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 D I V W D F + + +L S E+ L TD I++LN Sbjct: 24 DKDIRVTAETWSD----------WFHRWLESLHSD--LPPAPSYEIGLRLTDDAEIQSLN 71 Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHL 126 +YR DKPT+VLSF L LGDIV++ E +A G L Sbjct: 72 AQYRHQDKPTDVLSFAALEVDFPQIPEMLVAPLYLGDIVISVNTAERQAQQQGHSLPTEL 131 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 L HG LHLLG+DH D++ M + +L+ + I+ Sbjct: 132 AWLAAHGLLHLLGWDHPDEEQLMQMLKQQVELLKKISID 170 >gi|332664486|ref|YP_004447274.1| metalloprotease ybeY [Haliscomenobacter hydrossis DSM 1100] gi|332333300|gb|AEE50401.1| metalloprotease ybeY [Haliscomenobacter hydrossis DSM 1100] Length = 159 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 9/143 (6%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + + +EI+ + + + ++S+ K ++ ++ VF D + LN EY D Sbjct: 21 SFFAEEIYFEPANPELLRRWIEEIVSRE---KRELIFINYVFCDDPYLLKLNQEYLQHDT 77 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++FP ++ GD+ ++ + I A+ G FE L ++IHG LHL G Sbjct: 78 LTDIITFPYHD------PPIVEGDVFISVDRIHDNAHQFGVTFEQELHRVMIHGVLHLCG 131 Query: 140 YDHVDDKDACVMEGLERSILEDL 162 Y ++ M E L L Sbjct: 132 YPDKAPEEKARMTEKEDEALNLL 154 >gi|255690276|ref|ZP_05413951.1| putative metalloprotease [Bacteroides finegoldii DSM 17565] gi|260624179|gb|EEX47050.1| putative metalloprotease [Bacteroides finegoldii DSM 17565] Length = 139 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKAVAAS---YGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G ++N L +IIHG LHL G + Sbjct: 67 FDYCEGD------RLSGDLFISLDTIRTNAEQFGASYDNELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILE 160 + +ME E L Sbjct: 121 GEREIMEAAENKALA 135 >gi|293373384|ref|ZP_06619740.1| metalloprotein, YbeY family [Bacteroides ovatus SD CMC 3f] gi|292631670|gb|EFF50292.1| metalloprotein, YbeY family [Bacteroides ovatus SD CMC 3f] Length = 128 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 12/133 (9%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 ++ + KAV+ + + E++ +F +I +N +Y D T++++F Sbjct: 3 DIKKRETTEWIKAVAA------SYGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF 56 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + GD+ ++ + I A G +E+ L +IIHG LHL G + Sbjct: 57 DYCEGD------RLSGDLFISLDTIRTNAEQFGASYEDELHRVIIHGILHLCGINDKGPG 110 Query: 147 DACVMEGLERSIL 159 + VME E L Sbjct: 111 EREVMEAAENQAL 123 >gi|260549789|ref|ZP_05824005.1| metal-dependent hydrolase [Acinetobacter sp. RUH2624] gi|260407039|gb|EEX00516.1| metal-dependent hydrolase [Acinetobacter sp. RUH2624] Length = 158 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 12/164 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLR--HVGYKEDCEIGVACVDLEESHQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHV---DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH +D + LE IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHEISDEDAEEME--SLEIEILAKLNIANPYQ 157 >gi|188995326|ref|YP_001929578.1| hypothetical protein PGN_1462 [Porphyromonas gingivalis ATCC 33277] gi|238691487|sp|B2RKT6|RRMF_PORG3 RecName: Full=Probable rRNA maturation factor gi|188595006|dbj|BAG33981.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 151 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 9/142 (6%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + + + L + + K ++ + S+ + + E+S +F D I N E+ D Sbjct: 6 FYAEGVSLPRIRRRIVGKWIAEVCSR---YGKAVGEISYLFCDDEYILKANQEFLDHDYY 62 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T++++F + A + + GD++++ + + A L +E+ L +IIHG LHL G Sbjct: 63 TDIITFDSCEADT------VNGDLLISLDTVRSNARALDLRYEDELHRVIIHGILHLCGL 116 Query: 141 DHVDDKDACVMEGLERSILEDL 162 KD M E L L Sbjct: 117 KDKSKKDEAQMRAAEEEALVML 138 >gi|294644443|ref|ZP_06722206.1| metalloprotein, YbeY family [Bacteroides ovatus SD CC 2a] gi|294810438|ref|ZP_06769095.1| metalloprotein, YbeY family [Bacteroides xylanisolvens SD CC 1b] gi|292640278|gb|EFF58533.1| metalloprotein, YbeY family [Bacteroides ovatus SD CC 2a] gi|294442403|gb|EFG11213.1| metalloprotein, YbeY family [Bacteroides xylanisolvens SD CC 1b] Length = 128 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 + + E++ +F +I +N +Y D T++++F + GD+ ++ + I Sbjct: 22 KRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFDYCEGD------RLSGDLFISLDTI 75 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A G +E+ L +IIHG LHL G + + +MEG E L Sbjct: 76 HTNAEQFGTSYEDELHRVIIHGILHLCGINDKGPGEREIMEGAENKAL 123 >gi|222823735|ref|YP_002575309.1| conserved hypothetical protein (UPF0054 domain protein) [Campylobacter lari RM2100] gi|222538957|gb|ACM64058.1| conserved hypothetical protein (UPF0054 domain protein) [Campylobacter lari RM2100] Length = 137 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV D + +N RG+DK T+VLSFP +LG IV+ + + +A Sbjct: 25 IELVLVDEKIMHEINLNQRGVDKTTDVLSFPLVQNCE-----NLLGSIVINLDEVSKKAM 79 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 E + L IH LHL GYDH + D M E+ +E + Sbjct: 80 EYKHSNEEEMALLFIHAMLHLQGYDH--EVDQGQMRQKEQEWIEYFKLP 126 >gi|21672692|ref|NP_660759.1| hypothetical protein BUsg427 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|21623332|gb|AAM67970.1| hypothetical 17.5 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 105 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 2/102 (1%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 ++ +N +YRG +K TN+LSF F + +LGD+VL +IIE E+ K E+ Sbjct: 1 MKNINLKYRGKNKSTNILSF--KFDLFINKNQTLLGDLVLCKKIIEKESLKYQKTLESRW 58 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 H+IIHG LHLLGYDH + K+ +ME +E I+ L PY Sbjct: 59 AHMIIHGTLHLLGYDHKNKKEKKIMEKIENKIMLFLNYEKPY 100 >gi|154249670|ref|YP_001410495.1| hypothetical protein Fnod_0988 [Fervidobacterium nodosum Rt17-B1] gi|154153606|gb|ABS60838.1| protein of unknown function UPF0054 [Fervidobacterium nodosum Rt17-B1] Length = 147 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 3/128 (2%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F + V N + + V++S +F + +N +YRG D T+VL+F + Sbjct: 14 FIQKVKNELEAIVKKEIGNVDVSFIFITPETMAEMNKQYRGKDGATDVLTFVYGNNAEGE 73 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV-DDKDACVMEGL 154 G L E I + G E L+ +++H LH+ GYDH +++ M Sbjct: 74 EEPYSEG--YLCLEKILENSKEFGNSLEKELLTVLVHSILHMAGYDHEYSSENSEEMFKK 131 Query: 155 ERSILEDL 162 + ++ + Sbjct: 132 QEEYVDKI 139 >gi|255010260|ref|ZP_05282386.1| hypothetical protein Bfra3_14062 [Bacteroides fragilis 3_1_12] gi|313148055|ref|ZP_07810248.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136822|gb|EFR54182.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 139 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 12/134 (8%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 ++ + KAV+ + I E++ +F +I +N +Y D T++++F Sbjct: 14 DIKKRETTEWIKAVAAT------YGKRIGEIAYIFCSDEKILEVNRQYLQHDYYTDIITF 67 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + GD+ ++ E ++ + ++ L IIHG LHL G + Sbjct: 68 DYCQGD------RLSGDLFISLETVKTNSEQFNTTYDEELHRTIIHGILHLCGINDKGPG 121 Query: 147 DACVMEGLERSILE 160 + +ME E L Sbjct: 122 EREIMEAAENRALA 135 >gi|315452585|ref|YP_004072855.1| putative metalloprotease HPK [Helicobacter felis ATCC 49179] gi|315131637|emb|CBY82265.1| putative metalloprotease HPK [Helicobacter felis ATCC 49179] Length = 146 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 7/109 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV DS RI+ LN +YRG+DK T+VLSFP + +LG +V+ E ++EA Sbjct: 35 VELVLVDSERIQELNRDYRGVDKSTDVLSFPIEMPAQ-----NLLGSVVINVECAQMEAQ 89 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + L L +HG+LHLLGYDH +KD LE +++ + Sbjct: 90 KRGHSLLDELRLLFLHGYLHLLGYDH--EKDNGEQRALEEEMIQVFNLP 136 >gi|212692566|ref|ZP_03300694.1| hypothetical protein BACDOR_02063 [Bacteroides dorei DSM 17855] gi|237709119|ref|ZP_04539600.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724398|ref|ZP_04554879.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265752644|ref|ZP_06088213.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212664851|gb|EEB25423.1| hypothetical protein BACDOR_02063 [Bacteroides dorei DSM 17855] gi|229437267|gb|EEO47344.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456815|gb|EEO62536.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263235830|gb|EEZ21325.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 138 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + + + E++ +F +I +N +Y D T++ Sbjct: 7 DGVKMPDIKKKETTEWIKEVAA---CYGKRVGEIAYIFCSDDKILEVNQQYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + GD+ ++ + + A + ++ L +IIHG LHL G + Sbjct: 64 ITFDYCEGNRIS------GDLFISLDTVRTNAEQFEQPYDRELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 GPGEREIMEAAENKALA 134 >gi|149919545|ref|ZP_01908025.1| hypothetical protein PPSIR1_10855 [Plesiocystis pacifica SIR-1] gi|149819670|gb|EDM79097.1| hypothetical protein PPSIR1_10855 [Plesiocystis pacifica SIR-1] Length = 166 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 8/121 (6%) Query: 48 YFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLA 107 + E + L + TD + L+ Y G + PT+VLSF G LGD+VL Sbjct: 40 HIPPEELAVLGVRITDDEEMSALHLRYMGEEGPTDVLSF-------TGDGPGDLGDLVLD 92 Query: 108 YEIIEIEANVLGKEFE-NHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 ++ IE +A + L++HG HL G+DH D + M ER +L LG+ Sbjct: 93 WQAIERQAAAPTDAARLDEATVLMVHGLAHLTGHDHRDRVEGRRMHLDERRVLRSLGVAS 152 Query: 167 P 167 P Sbjct: 153 P 153 >gi|108804346|ref|YP_644283.1| hypothetical protein Rxyl_1509 [Rubrobacter xylanophilus DSM 9941] gi|122381776|sp|Q1AVV7|RRMF_RUBXD RecName: Full=Probable rRNA maturation factor gi|108765589|gb|ABG04471.1| protein of unknown function UPF0054 [Rubrobacter xylanophilus DSM 9941] Length = 135 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY 108 E + ELS+ + I LN ++R D PT+VLSF DG M+G+IV+ Sbjct: 35 LDPERMGELSVALVEPEVIHDLNLKFRNKDAPTDVLSF-----EVDGPYGEMVGEIVICP 89 Query: 109 EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E++ L++HG LHL G DH ++ +A M +++ ++E Sbjct: 90 GCAEMDLEE-----------LVVHGALHLSGMDHGENFEASEMARVQKRVMEA 131 >gi|157273353|gb|ABV27252.1| conserved hypothetical protein [Candidatus Chloracidobacterium thermophilum] Length = 175 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 29/148 (19%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D L L + + ++ V+++LVF + + LN YRG+D PT+V Sbjct: 14 DRAGLAQLAQATLEAVLGPRLAAA-------VDVNLVFVGDNAMRRLNHIYRGVDAPTDV 66 Query: 84 LSFPTAFASSD--------------------GCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 LSF S +LG++++A A Sbjct: 67 LSFVHLELPSPYTHRRAQREAWFFSRPETGLDEEPPLLGEVIIATPTARRYAERHALTCA 126 Query: 124 NHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + L+IHG +HL GYDH D A M Sbjct: 127 EEIQRLVIHGIIHLCGYDHETD--AGQM 152 >gi|256820953|ref|YP_003142232.1| hypothetical protein Coch_2127 [Capnocytophaga ochracea DSM 7271] gi|256582536|gb|ACU93671.1| protein of unknown function UPF0054 [Capnocytophaga ochracea DSM 7271] Length = 139 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 9/130 (6%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 + + V + + + ++ +F D + +N EY D T++++F + Sbjct: 14 FKKNEVKRWVKRVAQSE---GKEVGNINYIFCDDEYLHKINVEYLQHDTLTDIITFDYSE 70 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 ++ DI ++ E ++ AN+ F+ L+ ++ HG LHL GY +D+ + Sbjct: 71 ------GKVLHSDIYISVERVKENANIFKVPFQRELLRVLAHGLLHLCGYKDKTPEDSAL 124 Query: 151 MEGLERSILE 160 M E + Sbjct: 125 MRNKEEEKMN 134 >gi|169794645|ref|YP_001712438.1| hypothetical protein ABAYE0460 [Acinetobacter baumannii AYE] gi|213157984|ref|YP_002320782.1| hypothetical protein AB57_3479 [Acinetobacter baumannii AB0057] gi|215482234|ref|YP_002324416.1| Uncharacterized protein family UPF0054 family protein [Acinetobacter baumannii AB307-0294] gi|301345375|ref|ZP_07226116.1| hypothetical protein AbauAB0_04004 [Acinetobacter baumannii AB056] gi|301511253|ref|ZP_07236490.1| hypothetical protein AbauAB05_06733 [Acinetobacter baumannii AB058] gi|301595635|ref|ZP_07240643.1| hypothetical protein AbauAB059_07482 [Acinetobacter baumannii AB059] gi|332855634|ref|ZP_08435977.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013150] gi|332868553|ref|ZP_08438219.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013113] gi|226703838|sp|B7I9D7|RRMF_ACIB5 RecName: Full=Probable rRNA maturation factor gi|226707624|sp|B7GW53|RRMF_ACIB3 RecName: Full=Probable rRNA maturation factor gi|238688043|sp|B0V6T5|RRMF_ACIBY RecName: Full=Probable rRNA maturation factor gi|169147572|emb|CAM85433.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|213057144|gb|ACJ42046.1| conserved hypothetical protein [Acinetobacter baumannii AB0057] gi|213989001|gb|ACJ59300.1| Uncharacterized protein family UPF0054 family protein [Acinetobacter baumannii AB307-0294] gi|332727349|gb|EGJ58785.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013150] gi|332733323|gb|EGJ64516.1| translation metalloprotein YbeY [Acinetobacter baumannii 6013113] Length = 158 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D L Sbjct: 1 MKISLSLQQDFRSPELELK---RAQLKKIIETTLR--HVGYKEDCEIGIACVDLEESHQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHV---DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH +D + GLE IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEME--GLEIEILAKLNIANPYQ 157 >gi|326798706|ref|YP_004316525.1| metalloprotease ybeY [Sphingobacterium sp. 21] gi|326549470|gb|ADZ77855.1| metalloprotease ybeY [Sphingobacterium sp. 21] Length = 144 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 8/141 (5%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + +EI +++ + + + I+ E+S +F + +N EY D Sbjct: 8 FFTEEIKYTIKNKLLLKQWIKDAITNEGL---KPGEISFIFCSDEYLHKINVEYLNHDTY 64 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T++++F + + ++ GDI ++ + I+ A + + L +IIHG LHL GY Sbjct: 65 TDIITFDNSEDEN-----VIAGDIFISIDRIKENAKSFLVKEVDELHRVIIHGILHLCGY 119 Query: 141 DHVDDKDACVMEGLERSILED 161 D M E L Sbjct: 120 LDKKPVDKKRMTEKENEYLSK 140 >gi|54020099|ref|YP_115737.1| hypothetical protein mhp224 [Mycoplasma hyopneumoniae 232] gi|71893510|ref|YP_278956.1| hypothetical protein MHJ_0154 [Mycoplasma hyopneumoniae J] gi|72080497|ref|YP_287555.1| hypothetical protein MHP7448_0158 [Mycoplasma hyopneumoniae 7448] gi|62901248|sp|Q601H8|RRMF_MYCH2 RecName: Full=Probable rRNA maturation factor gi|123645188|sp|Q4A8K7|RRMF_MYCH7 RecName: Full=Probable rRNA maturation factor gi|123645909|sp|Q4AAH6|RRMF_MYCHJ RecName: Full=Probable rRNA maturation factor gi|53987272|gb|AAV27473.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] gi|71851637|gb|AAZ44245.1| conserved hypothetical protein [Mycoplasma hyopneumoniae J] gi|71913621|gb|AAZ53532.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448] Length = 150 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 +F K L+ K E + L L+ + + L +++ I+ +VLSFP+ + Sbjct: 19 KLFRKIFKLLVEKEQITGE--ISLDLMLITQRKAQKLAIKFKNINYIPDVLSFPSNLIIA 76 Query: 94 DGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 L LG+I + I +AN G E +L +H HLLG+DH D+K +M+ Sbjct: 77 KKNFRLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLFVHSIYHLLGFDHQDEKTNKLMD 136 Query: 153 GLERSILEDLGIN 165 +IL +LGIN Sbjct: 137 EKVENILINLGIN 149 >gi|228470093|ref|ZP_04055002.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] gi|228308231|gb|EEK17086.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] Length = 150 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 2/107 (1%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E++ +TD I N + D T+V++FP S + GDI+++ + + A Sbjct: 14 EINFQYTDDEGILKANRAFLQHDYYTDVITFPRE--SEQEGDDAIYGDILISIDTVATNA 71 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LG F+ L ++IHG LHLLG D + +M E L L Sbjct: 72 QELGVPFKQELYRVMIHGILHLLGIDDQTQSERELMRMAEDRALMQL 118 >gi|218131741|ref|ZP_03460545.1| hypothetical protein BACEGG_03362 [Bacteroides eggerthii DSM 20697] gi|317474643|ref|ZP_07933917.1| hypothetical protein HMPREF1016_00896 [Bacteroides eggerthii 1_2_48FAA] gi|217986044|gb|EEC52383.1| hypothetical protein BACEGG_03362 [Bacteroides eggerthii DSM 20697] gi|316909324|gb|EFV31004.1| hypothetical protein HMPREF1016_00896 [Bacteroides eggerthii 1_2_48FAA] Length = 137 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 10/142 (7%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + D I + + + + + + + ++ I E++ +F +I +N +Y D Sbjct: 3 SYQADGIKMPAIKKRETTEWIKAVAAT---YEKRIGEIAYIFCSDEKILEVNRQYLQHDY 59 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG-KEFENHLVHLIIHGFLHLL 138 T++++F + + GD+ ++ + + A ++E L +IIHG LHL Sbjct: 60 YTDIITFDYCE------GNRLSGDLFISLDTVRTNAEQFAGNDYERELHRVIIHGILHLC 113 Query: 139 GYDHVDDKDACVMEGLERSILE 160 G + + +ME E L Sbjct: 114 GINDKGPGEREIMEAAENKALA 135 >gi|149199105|ref|ZP_01876145.1| hypothetical protein LNTAR_24389 [Lentisphaera araneosa HTCC2155] gi|149137894|gb|EDM26307.1| hypothetical protein LNTAR_24389 [Lentisphaera araneosa HTCC2155] Length = 160 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 4/146 (2%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N + TL E + ++ + + + + L++ FTD IE +N ++ + Sbjct: 2 NISIQSDTDKYTLAETKHIEDIALYLCDHWGLSKKHCSLNISFTDDAGIEPVNVQFLQHE 61 Query: 79 KPTNVLSFPT----AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 T+V+SF +D +LG+++++ E + +A F + + + HG Sbjct: 62 GATDVISFDYLDDYEEEFADEDDPFVLGELLISLETAQSQAQTYDSSFNDEALLYVAHGI 121 Query: 135 LHLLGYDHVDDKDACVMEGLERSILE 160 LHL G+D + D M E ++ Sbjct: 122 LHLCGFDDHQEDDIKAMRDAEAQSMK 147 >gi|260061291|ref|YP_003194371.1| hypothetical protein RB2501_06820 [Robiginitalea biformata HTCC2501] gi|88785423|gb|EAR16592.1| hypothetical protein RB2501_06820 [Robiginitalea biformata HTCC2501] Length = 140 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 9/139 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E + + + N++ EL VF + +N +Y G D T++ Sbjct: 7 SETDFSLPNPAKYTEWIINVLKSRELTP---GELQFVFCSDDYLLEMNHKYLGHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 L+F + + GDI ++ + I A FE L ++IHG LHL+G+ Sbjct: 64 LTF------ENDLEDGVSGDIFISIDRIRDNAKTYCVPFEEELARVMIHGVLHLIGFGDS 117 Query: 144 DDKDACVMEGLERSILEDL 162 +K+ +M E + L Sbjct: 118 TEKEKEIMRQEESACLRMF 136 >gi|198274088|ref|ZP_03206620.1| hypothetical protein BACPLE_00225 [Bacteroides plebeius DSM 17135] gi|198273166|gb|EDY97435.1| hypothetical protein BACPLE_00225 [Bacteroides plebeius DSM 17135] Length = 140 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 12/133 (9%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 ++ + KAV+ + + E++ +F +I +N +Y D T++++F Sbjct: 14 IKKRETTAWIKAVAET------YGKKVGEIAYIFCSDEKILEVNRQYLQHDYYTDIITFD 67 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + GD+ ++ + + A +E L +IIHG LHL G + + Sbjct: 68 YCE------GKKLSGDLFISLDTVRTNAEQFDAAYETELYRVIIHGILHLCGINDKGPGE 121 Query: 148 ACVMEGLERSILE 160 +ME E LE Sbjct: 122 REIMEAAENKALE 134 >gi|253568963|ref|ZP_04846373.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840982|gb|EES69063.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 137 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + N+ + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKNVAAS---YGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +++ L +IIHG LHL G + Sbjct: 67 FDYCEGD------RLSGDLFISLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILE 160 + +ME E L Sbjct: 121 GEREIMEEAENKALA 135 >gi|213962456|ref|ZP_03390718.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213954782|gb|EEB66102.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 139 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++ +F D + +N EY D T++++F ++ DI ++ E ++ A Sbjct: 37 INYIFCDDEYLHKINVEYLQHDTLTDIITFDYTE------EKVLHSDIYISVERVKENAE 90 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + F+ L+ ++ HG LHL GY KD+ +M E ++ Sbjct: 91 IFKVPFQRELLRVLAHGLLHLCGYKDKTPKDSALMRQKEEEMM 133 >gi|167764038|ref|ZP_02436165.1| hypothetical protein BACSTE_02421 [Bacteroides stercoris ATCC 43183] gi|167698154|gb|EDS14733.1| hypothetical protein BACSTE_02421 [Bacteroides stercoris ATCC 43183] Length = 137 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 10/138 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D I + + + + + + + + I E++ +F +I +N +Y D T++ Sbjct: 7 DGIEMPAIKKRETTEWIKAVAAT---YNKRIGEIAYIFCSDEKILEVNRQYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG-KEFENHLVHLIIHGFLHLLGYDH 142 ++F + + GD+ ++ + + A ++E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GNRLSGDLFISLDTVRTNAEQFAGNDYERELYRVIIHGILHLCGIND 117 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 KGPGEREIMEAAENKALA 135 >gi|333029485|ref|ZP_08457546.1| metalloprotease ybeY [Bacteroides coprosuis DSM 18011] gi|332740082|gb|EGJ70564.1| metalloprotease ybeY [Bacteroides coprosuis DSM 18011] Length = 159 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 57/134 (42%), Gaps = 9/134 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + E + + + + +K + E++ +F +I +N Y D T++++ Sbjct: 23 VEMPIINEKLIQEWIKEVATK---YQRRAGEIAYIFCSDEKILEVNRTYLQHDYYTDIIT 79 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F +++ GD+ ++ + ++ + + L IIHG LHL G + Sbjct: 80 FDYC------KGNIISGDLFISLDTVKTNSEQFNTPYNEELHRTIIHGILHLCGINDKGP 133 Query: 146 KDACVMEGLERSIL 159 + +ME E L Sbjct: 134 GEREIMEQAENEAL 147 >gi|317486292|ref|ZP_07945124.1| hypothetical protein HMPREF0179_02482 [Bilophila wadsworthia 3_1_6] gi|316922462|gb|EFV43716.1| hypothetical protein HMPREF0179_02482 [Bilophila wadsworthia 3_1_6] Length = 169 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 8/128 (6%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 C +A+S ++ EL LV + N Y G PTNVLSFP Sbjct: 36 FCRAELHRALSAMLRAA---GSGPAELDLVLVRDAGMADYNLRYMGCHGPTNVLSFPIDE 92 Query: 91 ---ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 D + LG +V + + + E + G++ E H + L+ HG HL+GYDH + D Sbjct: 93 QIAGPEDEDVPVQLGSLVFSVDTLHRETLLYGQDPEEHCLRLLAHGLGHLVGYDHGPEMD 152 Query: 148 A--CVMEG 153 M Sbjct: 153 ELCSEMLS 160 >gi|189183988|ref|YP_001937773.1| putative metalloprotease [Orientia tsutsugamushi str. Ikeda] gi|189180759|dbj|BAG40539.1| hypothetical protein OTT_1081 [Orientia tsutsugamushi str. Ikeda] Length = 167 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 11/160 (6%) Query: 18 ENALWGD--EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 ++++W + EI+L + +++ N+ +K V++ E++++ T+ H ++ LNF +R Sbjct: 10 QHSIWRNHKEINLCYVKKIIKTTLYHNIFAKLQSVQQ--AEVAILLTNDHEMQNLNFTHR 67 Query: 76 GIDKPTNVLSFPTAFASSDGCSSL-------MLGDIVLAYEIIEIEANVLGKEFENHLVH 128 I+KPTNVLSFP S+L LGDI Y I EA K F NH H Sbjct: 68 KINKPTNVLSFPDQVLDWQNLSTLDIQDNYIYLGDIAFGYNTIAKEAVEQQKTFINHFTH 127 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L+IH LHLLG+DH D +A +ME LE ++L I PY Sbjct: 128 LLIHAILHLLGFDHQHDSEAIIMEELEVNLLAKFSIASPY 167 >gi|86131105|ref|ZP_01049704.1| conserved hypothetical protein [Dokdonia donghaensis MED134] gi|85818516|gb|EAQ39676.1| conserved hypothetical protein [Dokdonia donghaensis MED134] Length = 135 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 7/137 (5%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIV-ELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E + E+V + + + + ++ IV EL+ +F D + +N ++ D T++ Sbjct: 3 EFNSTNNFELVNPEQIISWLEVVISAEKKIVGELNYIFCDDAYLHKINVDFLDHDTFTDI 62 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF +++ GD+ ++ E +E A F + L +++HG LH GY Sbjct: 63 ISFDYT------QGNVVSGDMYISVERVEENAQDFNCSFRDELSRVMVHGILHYCGYKDK 116 Query: 144 DDKDACVMEGLERSILE 160 ++A +M E + L Sbjct: 117 SIEEAKLMRSKENTYLA 133 >gi|307564806|ref|ZP_07627334.1| metalloprotein, YbeY family [Prevotella amnii CRIS 21A-A] gi|307346528|gb|EFN91837.1| metalloprotein, YbeY family [Prevotella amnii CRIS 21A-A] Length = 144 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 9/134 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + +K + + + ++ +F + +I +N EY D T++++ Sbjct: 9 VKMPKIRKRLISKWIKAVAKSHGY---ETGDIGYMFVNDEKILQINNEYLKHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F A++ GD+V++ + + A + K ++N L +IIHG LHL G + Sbjct: 66 FDYDEANTIS------GDLVISIDTVRTNAELFKKTYQNELERVIIHGILHLCGINDKGP 119 Query: 146 KDACVMEGLERSIL 159 + +ME E L Sbjct: 120 GEREIMEDNENKAL 133 >gi|293610873|ref|ZP_06693173.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827217|gb|EFF85582.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 158 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 12/164 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D + L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTL--HHVGYKEDCEIGVACVDLDESQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHV---DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH +D + GLE IL + I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEME--GLEIEILAKINIANPYQ 157 >gi|29348692|ref|NP_812195.1| hypothetical protein BT_3283 [Bacteroides thetaiotaomicron VPI-5482] gi|62901447|sp|Q8A2M2|RRMF_BACTN RecName: Full=Probable rRNA maturation factor gi|29340597|gb|AAO78389.1| conserved hypothetical protein with conserved domain [Bacteroides thetaiotaomicron VPI-5482] Length = 137 Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + N+ + + + E++ +F +I +N +Y D T++++ Sbjct: 10 VKMPDIKKRETTEWIKNVAAS---YGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +++ L +IIHG LHL G + Sbjct: 67 FDYCQGD------RLSGDLFISLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGP 120 Query: 146 KDACVMEGLERSILE 160 + +ME E L Sbjct: 121 GEREIMEEAENKALA 135 >gi|311695359|gb|ADP98232.1| metalloprotease YbeY [marine bacterium HP15] Length = 115 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 18/123 (14%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +D Q E E ++ ++ + E+ E+++ + + L Sbjct: 1 MDFQQVFEAPGIPSETQVQKWAQLAWQ-------------GEDPSEVTVRIVGTEESQAL 47 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +YRG D PTNVLSFP F + G + + GD+V+ ++E EA K+ L Sbjct: 48 NHQYRGRDYPTNVLSFP--FEAPAGITVPLAGDLVICAPVVEKEAMEQEKKPGRPLG--- 102 Query: 131 IHG 133 HG Sbjct: 103 AHG 105 >gi|329960651|ref|ZP_08298994.1| translation metalloprotein YbeY [Bacteroides fluxus YIT 12057] gi|328532524|gb|EGF59318.1| translation metalloprotein YbeY [Bacteroides fluxus YIT 12057] Length = 137 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 10/138 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + L + + + + + + I E++ +F +I +N +Y D T++ Sbjct: 7 DGVEMPVLKKRETTEWIKAVAAT---YGKRIGEIAYIFCSDEKILEVNRQYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG-KEFENHLVHLIIHGFLHLLGYDH 142 ++F + + GD+ ++ + + A ++E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GNRLSGDLFISLDTVRTNAEQFAGNDYERELYRVIIHGILHLCGIND 117 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 KGPGEREIMEEAENKALA 135 >gi|163786964|ref|ZP_02181412.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|163789246|ref|ZP_02183688.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|159875461|gb|EDP69523.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|159878824|gb|EDP72880.1| glutamyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] Length = 136 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E + + +K +S IS+ E++ +F + LN ++ D T+++ Sbjct: 7 ETNFKLDNSEQISKWISKTISEENC---KEGEINYIFCSDEYLHRLNVDFLNHDTLTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 SF + + GD+ ++ + ++ A FE+ + +IIHG LH GY Sbjct: 64 SFDYS------VGKELHGDVYISVDRVKENAFEFKTAFEDEISRVIIHGVLHYCGYKDKS 117 Query: 145 DKDACVMEGLERSILED 161 ++D +M E L Sbjct: 118 EEDEMLMRLKEDYYLNK 134 >gi|329956354|ref|ZP_08296951.1| translation metalloprotein YbeY [Bacteroides clarus YIT 12056] gi|328524251|gb|EGF51321.1| translation metalloprotein YbeY [Bacteroides clarus YIT 12056] Length = 137 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 10/138 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + ++ + E++ +F +I +N Y D T++ Sbjct: 7 DGVEMPAIKKRETTEWIKAVAAT---YEKRVGEIAYIFCSDEKILEVNRRYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG-KEFENHLVHLIIHGFLHLLGYDH 142 ++F + + GD+ ++ + + A ++E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GNRLSGDLFISLDTVRTNAEQFAGNDYERELYRVIIHGILHLCGIND 117 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 KGPGEREIMEAAENKALA 135 >gi|124010286|ref|ZP_01694939.1| conserved hypothetical protein, putative [Microscilla marina ATCC 23134] gi|123983671|gb|EAY24111.1| conserved hypothetical protein, putative [Microscilla marina ATCC 23134] Length = 157 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 8/139 (5%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + ++ E K V+ + + + L+ +F + + +N EY D Sbjct: 20 FFSEQTDFVLSKEAEAIKWVNLIAEQANYKING---LNYIFCNDAYLHQINVEYLDHDTY 76 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T++++F + L+ GDI ++ + I A F L ++ HG LHLLG+ Sbjct: 77 TDIITFDNSEEEQ-----LIEGDIFISIDRIRENAATYNASFAVELHRVMAHGLLHLLGF 131 Query: 141 DHVDDKDACVMEGLERSIL 159 D + +M E L Sbjct: 132 GDKTDDEKLIMRTQEDKAL 150 >gi|315224153|ref|ZP_07865993.1| possible metal dependent hydrolase [Capnocytophaga ochracea F0287] gi|314945886|gb|EFS97895.1| possible metal dependent hydrolase [Capnocytophaga ochracea F0287] Length = 139 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 9/130 (6%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 + + V + + + ++ +F D + +N EY D T++++F + Sbjct: 14 FKKNEVKRWVKRVAQSE---GKEVGNINYIFCDDEYLHKINVEYLQHDTLTDIITFDYSE 70 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 ++ DI ++ E ++ AN+ F+ L+ ++ HG LHL GY +D+ + Sbjct: 71 ------GKVLHSDIYISVERVKENANIFKVPFQKELLRVLAHGLLHLCGYKDKTPEDSAL 124 Query: 151 MEGLERSILE 160 M E + Sbjct: 125 MRNKEEEKMN 134 >gi|163840663|ref|YP_001625068.1| putative metalloprotease [Renibacterium salmoninarum ATCC 33209] gi|189039400|sp|A9WQS5|RRMF_RENSM RecName: Full=Probable rRNA maturation factor gi|162954139|gb|ABY23654.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 157 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 15/165 (9%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +++ E+ + E L L VF K ELS++ D +E L Sbjct: 1 MSVEVNNESGVELPEAELVRLSRFVFEK----------LYLHPQTELSIILADREAMEKL 50 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD----GCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + E+ T+VLSFP + +LGDIV+ ++ + +A G E+ L Sbjct: 51 HVEWMYEPGATDVLSFPMDELRPGTVSRPAPAGLLGDIVICPQVAQEQAQAGGHSVEDEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDPYEV 170 + L HG LHLLGYDH D ++ M GL+R +L LG + P E Sbjct: 111 LLLTTHGLLHLLGYDHEDPEEKAEMFGLQRELLTSFLGRDAPAET 155 >gi|303246548|ref|ZP_07332827.1| protein of unknown function UPF0054 [Desulfovibrio fructosovorans JJ] gi|302492258|gb|EFL52133.1| protein of unknown function UPF0054 [Desulfovibrio fructosovorans JJ] Length = 149 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 4/84 (4%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 L + LN +Y G+ PTNVLSFP D LG++ ++ + EA + Sbjct: 40 LRLVGDAEMARLNSDYLGLCGPTNVLSFPA----DDPDRPDYLGEMAVSRDTAAREAFLY 95 Query: 119 GKEFENHLVHLIIHGFLHLLGYDH 142 G++ HL L+ HGFLHL G+DH Sbjct: 96 GQDPTEHLTRLLAHGFLHLAGFDH 119 >gi|126643046|ref|YP_001086030.1| hypothetical protein A1S_3031 [Acinetobacter baumannii ATCC 17978] Length = 110 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 50/108 (46%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEF 122 LN +YR DKPTNVLSFP+ +L LGD+V+ ++ EA K Sbjct: 2 EESHQLNLQYREKDKPTNVLSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTA 61 Query: 123 ENHLVHLIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 +NH HL++HG LHLLGYDH D+DA MEGLE IL L I +PY+ Sbjct: 62 QNHFAHLLVHGVLHLLGYDHETSDEDAEEMEGLEIEILAKLNIANPYQ 109 >gi|189464937|ref|ZP_03013722.1| hypothetical protein BACINT_01281 [Bacteroides intestinalis DSM 17393] gi|189437211|gb|EDV06196.1| hypothetical protein BACINT_01281 [Bacteroides intestinalis DSM 17393] Length = 136 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 60/137 (43%), Gaps = 9/137 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + + + + + + + ++ + E++ +F +I +N Y D T++ Sbjct: 7 DGVEMPAIKKSKTTEWIKAVAAT---YEKRVGEIAYIFCSDEKILEVNRHYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + + GD+ ++ + + A G ++E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GNRLSGDLFISLDTVRTNAEQFGSDYETELHRVIIHGILHLCGINDK 117 Query: 144 DDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 GPGEREIMEEAENRALA 134 >gi|160888660|ref|ZP_02069663.1| hypothetical protein BACUNI_01077 [Bacteroides uniformis ATCC 8492] gi|270295007|ref|ZP_06201208.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478000|ref|ZP_07937182.1| hypothetical protein HMPREF1007_00298 [Bacteroides sp. 4_1_36] gi|156861974|gb|EDO55405.1| hypothetical protein BACUNI_01077 [Bacteroides uniformis ATCC 8492] gi|270274254|gb|EFA20115.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905789|gb|EFV27561.1| hypothetical protein HMPREF1007_00298 [Bacteroides sp. 4_1_36] Length = 137 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 60/138 (43%), Gaps = 10/138 (7%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D + + ++ + + + ++ + + + E++ +F +I +N +Y D T++ Sbjct: 7 DGVEMPSIKKRETTEWIKSVAAT---YGKRVGEIAYIFCSDEKILEVNRQYLQHDYYTDI 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL-GKEFENHLVHLIIHGFLHLLGYDH 142 ++F + + GD+ ++ + + A +E L +IIHG LHL G + Sbjct: 64 ITFDYCE------GNRLSGDLFISLDTVRTNAEQFADNNYERELYRVIIHGILHLCGIND 117 Query: 143 VDDKDACVMEGLERSILE 160 + +ME E L Sbjct: 118 KGPGEREIMEEAENKALA 135 >gi|312601107|gb|ADQ90362.1| Putative metalloprotease [Mycoplasma hyopneumoniae 168] Length = 150 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 +F K L+ K E + L L+ + + L +++ I+ +VLSFP+ + Sbjct: 19 KLFRKIFKLLVEKEQITGE--ISLDLMLITQRKAQKLAIKFKSINYIPDVLSFPSNLIIA 76 Query: 94 DGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 L LG+I + I +AN G E +L +H HLLG+DH D+K +M+ Sbjct: 77 KKNFRLHFLGEIFMTPAKIIKQANEYGHSEEREFSYLFVHSIYHLLGFDHQDEKTNKLMD 136 Query: 153 GLERSILEDLGIN 165 +IL +LGIN Sbjct: 137 EKVENILINLGIN 149 >gi|319900528|ref|YP_004160256.1| hypothetical protein Bache_0647 [Bacteroides helcogenes P 36-108] gi|319415559|gb|ADV42670.1| protein of unknown function UPF0054 [Bacteroides helcogenes P 36-108] Length = 138 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 10/136 (7%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + + + + + + + + E++ +F +I +N +Y D T++++ Sbjct: 9 VEMPAIKKRETTEWIKAVAAS---YGKKTGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 65 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG-KEFENHLVHLIIHGFLHLLGYDHVD 144 F + + GD+ ++ + + A ++E L +IIHG LHL G + Sbjct: 66 FDYCE------GNRLSGDLFISLDTVRTNAEQFAGNDYERELYRVIIHGILHLCGINDKG 119 Query: 145 DKDACVMEGLERSILE 160 + +ME E L Sbjct: 120 PGEREIMEEAENKALA 135 >gi|221120368|ref|XP_002165737.1| PREDICTED: similar to Putative metalloprotease C21orf57 [Hydra magnipapillata] Length = 159 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +L+ + + +LI+ + ++ L+F +++ LN+ +R ID+ T++LSF Sbjct: 7 NLQKAAIINTWQVRKDLITLRNIMGLQSFDVGLLFLSKNKMRELNYAHRKIDEATDILSF 66 Query: 87 P------TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 P A S LGDI L ++I + +V E + V L+ HG +HL GY Sbjct: 67 PFHQSLTNADISKMNLEEKNLGDIFLCPQLIRRKYDVHDFELRSVFVPLLTHGLVHLCGY 126 Query: 141 DHVDDKDACVMEGLERSILEDL 162 H ++ +M E IL+ Sbjct: 127 AHETEEQYELMHAKELEILKRF 148 >gi|283853555|ref|ZP_06370794.1| protein of unknown function UPF0054 [Desulfovibrio sp. FW1012B] gi|283571054|gb|EFC19075.1| protein of unknown function UPF0054 [Desulfovibrio sp. FW1012B] Length = 143 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 9/106 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E L + LN +Y G+ PTNVLSFP D LG++ ++ + + EA Sbjct: 37 EYDLRLVGDGEMAALNRDYLGLVGPTNVLSFPA----DDPGRPEYLGEMAVSLDTVAREA 92 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + G+E HL L+ HGFLHL G DH VME L +E Sbjct: 93 FLYGQEPATHLARLLAHGFLHLAGLDHGP-----VMEALTEQAVEA 133 >gi|282891330|ref|ZP_06299832.1| hypothetical protein pah_c050o119 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498827|gb|EFB41144.1| hypothetical protein pah_c050o119 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 152 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 5/139 (3%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D+ + L + K V +I + E E+ + F ++ L+ +Y PT+ Sbjct: 7 DQQKVLKLPKTSIKKIVQEVI---HLENELCHEVIIHFISDKKMRELHAQYFNDPSPTDC 63 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SFP + +LG+I + E G + IHG LHL+GYD + Sbjct: 64 ISFP--LDGPEETHYRVLGEIFVCPETAVKYTEQHGGDPYTETALYTIHGLLHLMGYDDI 121 Query: 144 DDKDACVMEGLERSILEDL 162 D M E+ LE L Sbjct: 122 KKTDQKAMRAAEKKHLEHL 140 >gi|257471496|ref|ZP_05635495.1| hypothetical protein BaphL_02205 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|311086173|gb|ADP66255.1| hypothetical protein CWO_02330 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086746|gb|ADP66827.1| hypothetical protein CWQ_02365 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087334|gb|ADP67414.1| hypothetical protein CWS_02310 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087838|gb|ADP67917.1| hypothetical protein CWU_02885 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 88 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SFP F + +LGD+VL IIE E+ K E+H H+ IHG LHLLGYDH Sbjct: 1 MSFP--FNKFIKINYKLLGDLVLCKNIIEKESLKYNKSLESHWAHITIHGTLHLLGYDHQ 58 Query: 144 DDKDACVMEGLERSILEDLGINDPY 168 ++K+A +ME LE I+ L P+ Sbjct: 59 NNKEADIMERLENKIMLSLNYKKPH 83 >gi|217077477|ref|YP_002335195.1| hypothetical protein THA_1410 [Thermosipho africanus TCF52B] gi|226734149|sp|B7ICX7|RRMF_THEAB RecName: Full=Probable rRNA maturation factor gi|217037332|gb|ACJ75854.1| conserved hypothetical protein [Thermosipho africanus TCF52B] Length = 134 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 8/115 (6%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 V ++LVF D IE LN +YR I+ PT+VL+F + +I + ++I+ Sbjct: 26 KDVNVNLVFIDKGEIERLNNQYRNINAPTDVLTFVYGDDD-------LYAEIFVCEDVIK 78 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLERSILEDLGIND 166 A FE L+ ++IH LH+ GYDH D +A M + L+ +++ Sbjct: 79 ENAEKFYNTFEKELLTVLIHAALHVAGYDHEYDTTNAKEMFQKQEEYLKKYDVDN 133 >gi|326335988|ref|ZP_08202165.1| metal dependent hydrolase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691952|gb|EGD33914.1| metal dependent hydrolase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 138 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 9/128 (7%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 E + + V +I+ ++ +++ +F + + +N +Y D T++++F Sbjct: 16 EADYQRWVQLIIASE---RKKEGDINYIFCNDEYLHKINVDYLQHDTLTDIITFDY---- 68 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 G + + DI ++ E ++ A G + L+ ++ HG LHL GY + + M Sbjct: 69 --GKDNTLSSDIYISVERVKENAQEYGVDLPTELLRVMAHGILHLCGYKDKTPEQSQEMR 126 Query: 153 GLERSILE 160 E + Sbjct: 127 QKEEEKMA 134 >gi|228471545|ref|ZP_04056320.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228277121|gb|EEK15801.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 138 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 9/129 (6%) Query: 32 CEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 E F + + +I+ ++ +++ +F + + +N +Y D T++++F Sbjct: 15 DEEDFQRWIQLIIASE---RKKEGDINYIFCNDEYLHKINVDYLQHDTLTDIITFDY--- 68 Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 G +L+ DI ++ E + A G +F L+ ++ HG LHL GY + + M Sbjct: 69 ---GKDNLLASDIYISIERVRENAQEFGVDFSTELLRVMSHGILHLCGYKDKTPEQSQQM 125 Query: 152 EGLERSILE 160 E + Sbjct: 126 RQKEEEKMA 134 >gi|120437624|ref|YP_863310.1| hypothetical protein GFO_3300 [Gramella forsetii KT0803] gi|145558812|sp|A0M6J8|RRMF_GRAFK RecName: Full=Probable rRNA maturation factor gi|117579774|emb|CAL68243.1| protein belonging to UPF0054 [Gramella forsetii KT0803] Length = 143 Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 9/134 (6%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E E + + I + I ++S +F D + +N EY D T++ Sbjct: 10 SENDFVLNREQDYRNWIEKAIESEN---KYIGDISFIFCDDEYLHKINLEYLAHDTYTDI 66 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 +SF + + + GDI ++ E ++ AN EF+ L ++IHG LH G+ Sbjct: 67 ISF------DNTLGNTLQGDIYISTERVQENANSFNTEFDEELKRVLIHGILHFCGFKDK 120 Query: 144 DDKDACVMEGLERS 157 +++ +M E Sbjct: 121 TEREQELMRRKEEE 134 >gi|145219509|ref|YP_001130218.1| hypothetical protein Cvib_0701 [Prosthecochloris vibrioformis DSM 265] gi|189040581|sp|A4SE07|RRMF_PROVI RecName: Full=Probable rRNA maturation factor gi|145205673|gb|ABP36716.1| protein of unknown function UPF0054 [Chlorobium phaeovibrioides DSM 265] Length = 148 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 9/135 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L E KAV ++S+ V + ++ + +N E+ G D T+ ++FP Sbjct: 11 RALPEAKLKKAVRLVLSEEGG---KAVSIDAIYCGGRMMRRINREFLGHDYDTDTVTFPY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + ++ G+ ++ + + A FE L+ + IH LHLLGYD ++ Sbjct: 68 SE------GLVVEGEFYVSLDEVGRNAVRFKSGFEQELLRVTIHSVLHLLGYDDASPEER 121 Query: 149 CVMEGLERSILEDLG 163 M E L LG Sbjct: 122 GRMRQKEDRYLRILG 136 >gi|326403549|ref|YP_004283631.1| putative metalloprotease [Acidiphilium multivorum AIU301] gi|325050411|dbj|BAJ80749.1| putative metalloprotease [Acidiphilium multivorum AIU301] Length = 150 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 12/111 (10%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ D+ ++ LN RG +KPTNVL++ +I+LA ++ EA Sbjct: 49 VILADNRTVKALNARDRGRNKPTNVLTYEMPP------------EIILALGVVLREARAA 96 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + +HL HL++HG LHL G DH + +A ME LE +L LG+ +P++ Sbjct: 97 RRRPAHHLAHLVVHGALHLAGEDHHEAGEARRMERLETRLLHRLGVPNPWK 147 >gi|269792677|ref|YP_003317581.1| hypothetical protein Taci_1067 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100312|gb|ACZ19299.1| protein of unknown function UPF0054 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 150 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENI--VELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 L E + L + + VE+SL F + + +N +YR +D T+VLS Sbjct: 11 FEDLKETLEGAWERFLREHRSLIPHQVEGVEVSLSFVEPEAMREVNLKYRQVDSSTDVLS 70 Query: 86 FPTAFASSDGCSS-----LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 FP L LGD+++ + +E + ++ +I HGFLHLLG+ Sbjct: 71 FPLWEEDGRFSPPVGWRWLPLGDVLVCVQDVEPLGE---GDRARGVLLVIHHGFLHLLGF 127 Query: 141 DHVDDKDACVMEGLERSIL 159 DH D++ M L+ ++ Sbjct: 128 DHGDEEQRREMWLLQDELM 146 >gi|281341183|gb|EFB16767.1| hypothetical protein PANDA_007691 [Ailuropoda melanoleuca] Length = 137 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRMYREKNIPTDVLSFPFHENIKAGELPQPDFQDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 L E I + +++ + L HG HLLG+ H + + Sbjct: 93 LGVEYIFQQCR-GHEDYYDILTVTATHGLCHLLGFTHSTEAEWQK 136 >gi|148284177|ref|YP_001248267.1| putative metalloprotease [Orientia tsutsugamushi str. Boryong] gi|146739616|emb|CAM79399.1| putative metal-dependent hydrolase [Orientia tsutsugamushi str. Boryong] Length = 167 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 11/160 (6%) Query: 18 ENALWGD--EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYR 75 ++ +W + EI+L + +++ N+ +K V++ E+ ++ T+ H ++ LNF +R Sbjct: 10 QHPIWNNHNEINLCYVKKIIKTTLCHNVFAKLQLVQQ--AEVVILLTNDHEMQNLNFTHR 67 Query: 76 GIDKPTNVLSFPTAFASSDGCSSL-------MLGDIVLAYEIIEIEANVLGKEFENHLVH 128 I+KPTNVLSFP S+L LGDI Y I EA K F NH H Sbjct: 68 KINKPTNVLSFPDQVLDWQNLSTLDIQDNYIYLGDIAFGYNSISKEAVEQQKTFINHFTH 127 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 L+IH LHLLG+DH D +A +ME LE ++L I PY Sbjct: 128 LLIHAILHLLGFDHQHDSEAIIMEELEVNLLAKFSIASPY 167 >gi|253582281|ref|ZP_04859504.1| metal-binding protein [Fusobacterium varium ATCC 27725] gi|251835820|gb|EES64358.1| metal-binding protein [Fusobacterium varium ATCC 27725] Length = 155 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 15/161 (9%) Query: 11 LDL--QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 +DL I++E + I+ E K + + + F + V LSL+FT + I+ Sbjct: 1 MDLVVDISLEIEGYSSLIN-----EEEMKKYIKEAL-ESEFESDRPVYLSLLFTGNEEIQ 54 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGKEFENHLV 127 +N +YRG D+PT+V+SF LGDIV++ E +E +A + L Sbjct: 55 VINKQYRGKDQPTDVISFAYHETEDFDIGPYDTLGDIVISMERVEEQAAEYNHSPKRELY 114 Query: 128 HLIIHGFLHLLGYDHVDDKDAC---VMEGLERSILEDLGIN 165 +++ HG LHLLGYDH+++ D E IL G Sbjct: 115 YVLTHGLLHLLGYDHIEEDDKKEMR---AREEEILGQFGYT 152 >gi|258593723|emb|CBE70064.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 146 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 22/116 (18%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + E LV I LN +YRG T+VLSFP S S +LGD+V++ E + Sbjct: 31 DQAECGLVLVGDRTIARLNRQYRGKATSTDVLSFPMREGSFASLSPHLLGDVVISAETAD 90 Query: 113 IEANVLGKEFENHLV-----------HLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +A G+ + L YDH +A M+ LER Sbjct: 91 RQAKAAGRTLRDELTALLIHGILHLLG-----------YDHQMPSEARRMKRLERQ 135 >gi|256828058|ref|YP_003156786.1| hypothetical protein Dbac_0243 [Desulfomicrobium baculatum DSM 4028] gi|256577234|gb|ACU88370.1| protein of unknown function UPF0054 [Desulfomicrobium baculatum DSM 4028] Length = 146 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 8/96 (8%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 + +LSL D + LN +Y G PTNVLSFP LGD+VL+ E + Sbjct: 35 DEWQLSLRIVDDREMAELNGQYMGCLGPTNVLSFPGDED--------WLGDLVLSAETLV 86 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 E + ++ + V L+ HG LHL+G+DH + +A Sbjct: 87 RECRLYNQDPHEYTVRLLAHGLLHLMGHDHGPEMEA 122 >gi|298387060|ref|ZP_06996614.1| metalloprotease [Bacteroides sp. 1_1_14] gi|298260210|gb|EFI03080.1| metalloprotease [Bacteroides sp. 1_1_14] Length = 137 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 I + + + + + N+ + + + E++ +F +I +N +Y D T++++ Sbjct: 10 IKMPDIKKRETTEWIKNVAAS---YGKRLGEIAYIFCSDEKILEVNRQYLQHDYYTDIIT 66 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + GD+ ++ + I A G +++ L +IIHG LHL G + Sbjct: 67 FDYCQGD------RLSGDLFISLDTIRTNAEQFGAAYDDELHRVIIHGILHLCGINDKGL 120 Query: 146 KDACVMEGLERSILE 160 + +ME E L Sbjct: 121 GEREIMEEAENKALA 135 >gi|169632397|ref|YP_001706133.1| hypothetical protein ABSDF0477 [Acinetobacter baumannii SDF] gi|238688242|sp|B0VQX0|RRMF_ACIBS RecName: Full=Probable rRNA maturation factor gi|169151189|emb|CAO99866.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 158 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 12/164 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + ++++ E+ L+ K + + + + E+ + D L Sbjct: 1 MKISLSLQQDFQSPELELK---RAQLKKIIETTLR--HVGYKEDCEIGIACVDLEESHQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTN LSFP+ +L LGD+V+ ++ EA K +NH H Sbjct: 56 NLQYREKDKPTNALSFPSDIPEEVLPMLDALPLGDLVICIPVVLQEALEQKKTAQNHFAH 115 Query: 129 LIIHGFLHLLGYDHV---DDKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH +D + GLE IL L I +PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEDAEEME--GLEIEILAKLNIANPYQ 157 >gi|311745076|ref|ZP_07718861.1| putative metalloprotease [Algoriphagus sp. PR1] gi|126577589|gb|EAZ81809.1| putative metalloprotease [Algoriphagus sp. PR1] Length = 141 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 8/136 (5%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + +E + + ++ K + + S+ F NI EL+ +F + +N EY D Sbjct: 5 FFQEETNFQLKQKLNRKKWLRKIASEEGF---NISELNYIFCSDEYLYNINVEYLDHDTY 61 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T++++F + + GDI ++ + ++ +N LG ++ L +I HG HL+GY Sbjct: 62 TDIITFDNSEEEQ-----TIEGDIFISIDRVQENSNKLGATLQDELSRVISHGLFHLMGY 116 Query: 141 DHVDDKDACVMEGLER 156 D +A M E Sbjct: 117 KDKDKNEAEEMRNKEE 132 >gi|91762483|ref|ZP_01264448.1| hypothetical protein PU1002_04421 [Candidatus Pelagibacter ubique HTCC1002] gi|91718285|gb|EAS84935.1| hypothetical protein PU1002_04421 [Candidatus Pelagibacter ubique HTCC1002] Length = 153 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 5/149 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + E ALW +I F ++ K Y + L+++ +++ I+ Sbjct: 1 MIKIDVVSECALWSKKIKRNK----TFFNSILKFFPKKYKFIGKKINLTILLSNNKNIKK 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++R +KPT+VLSFP + S LGDIV++YE + N+ EF+ +V + Sbjct: 57 LNKDFRNKNKPTDVLSFPFE-KKFNPKKSNYLGDIVISYEFMNKPKNISILEFKQKVVKI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSI 158 IHGFLHLLG+DH+ KD M E I Sbjct: 116 FIHGFLHLLGHDHIKLKDFKKMIKEEDLI 144 >gi|323457282|gb|EGB13148.1| hypothetical protein AURANDRAFT_18863 [Aureococcus anophagefferens] Length = 213 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 27/137 (19%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSS----------LMLG 102 + ++ + T I N +RG+ K T++LSFP + G L LG Sbjct: 69 SEFDVGIWLTTDATIRKYNTRFRGMRKSTDILSFPFHDELAPGALPDAVDRDDEDDLNLG 128 Query: 103 DIVLAYEIIEIEANV---LGK--------------EFENHLVHLIIHGFLHLLGYDHVDD 145 D+V++ + A + E + L++HG HLL YDH D Sbjct: 129 DMVVSVPYVRRRAEKDGGRDHAPGRGVAAAMAPVADVEERIHMLLVHGLCHLLNYDHETD 188 Query: 146 KDACVMEGLERSILEDL 162 + M LE +LE Sbjct: 189 DEFEDMVALEDELLETY 205 >gi|148260358|ref|YP_001234485.1| hypothetical protein Acry_1355 [Acidiphilium cryptum JF-5] gi|146402039|gb|ABQ30566.1| protein of unknown function UPF0054 [Acidiphilium cryptum JF-5] Length = 150 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 12/111 (10%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ D+ ++ LN RG +KPTNVL++ +I+LA ++ EA Sbjct: 49 VILADNRTVKALNARDRGRNKPTNVLTYEMPP------------EIILALGVVLREARAA 96 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYE 169 + +HL HL++HG LHL G DH + +A ME LE +L LG+ +P++ Sbjct: 97 RRRPAHHLAHLVVHGALHLAGEDHHEAGEARRMERLEARLLHRLGVPNPWK 147 >gi|262280176|ref|ZP_06057960.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257954|gb|EEY76688.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 160 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 8/162 (4%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + ++ E+ L+ K + + + E+ + D + L Sbjct: 1 MKISLTLQQDFLSPELELK---RAQLKKIIETTLR--HVGYNEDCEIGVACVDLAESQQL 55 Query: 71 NFEYRGIDKPTNVLSFPTAFASS--DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 N +YR DKPTNVLSFP+ + LGD+V+ ++ EA K + H H Sbjct: 56 NLQYREKDKPTNVLSFPSDIPEEVLPMLDAFPLGDLVICIPVVLQEAVEQKKTAQEHFAH 115 Query: 129 LIIHGFLHLLGYDHVD-DKDACVMEGLERSILEDLGINDPYE 169 L++HG LHLLGYDH D++A MEGLE IL L I++PY+ Sbjct: 116 LLVHGVLHLLGYDHETSDEEAEEMEGLEVEILAKLNIDNPYQ 157 >gi|110639867|ref|YP_680077.1| hypothetical protein CHU_3501 [Cytophaga hutchinsonii ATCC 33406] gi|123354224|sp|Q11PC9|RRMF_CYTH3 RecName: Full=Probable rRNA maturation factor gi|110282548|gb|ABG60734.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 143 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 7/142 (4%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + E L + + N I+K K +I+EL+ +F + +N ++ Sbjct: 4 ETIFFFKEDTQYQLRQRAEIRTWLNTIAKKE--KYSILELNYIFCSDEYLLQMNRDFLDH 61 Query: 78 DKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 D T++++F + + GDI ++ + ++ A + ++ L ++ HG LHL Sbjct: 62 DYYTDIITF-----DNSEVKGKIEGDIFISIDRVKDNAQLQHSTVKDELHRVLAHGLLHL 116 Query: 138 LGYDHVDDKDACVMEGLERSIL 159 GY K+ +M E + L Sbjct: 117 TGYKDKTTKEKEMMRAKEDASL 138 >gi|196234338|ref|ZP_03133167.1| protein of unknown function UPF0054 [Chthoniobacter flavus Ellin428] gi|196221605|gb|EDY16146.1| protein of unknown function UPF0054 [Chthoniobacter flavus Ellin428] Length = 146 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 14/134 (10%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP 87 LR L + + + + + G F + E+ + IE ++ + T+V++F Sbjct: 19 LRKLAPLALERCLEH-SADGRFALRQLEEVEVAIVTDRVIEDVHLRFLKTPGATDVITFE 77 Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 G+IV++ E A + L IIHG LHL GYD + D Sbjct: 78 Y-------------GEIVISAETAAAYARQYKHDVNRELGLYIIHGLLHLNGYDDLTPGD 124 Query: 148 ACVMEGLERSILED 161 A +M ++ ILE Sbjct: 125 AELMHRTQQDILEA 138 >gi|294054666|ref|YP_003548324.1| protein of unknown function UPF0054 [Coraliomargarita akajimensis DSM 45221] gi|293613999|gb|ADE54154.1| protein of unknown function UPF0054 [Coraliomargarita akajimensis DSM 45221] Length = 153 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 + ++ L+I D E + + + G+F ++ ELS+VF I Sbjct: 1 MSQIQLEINNRYKQLLDP-------ESATVTLFTAIEASGHFPIQSG-ELSIVFVGDPEI 52 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 ++ ++ PT+V++FP G+I+++ + ++ L L Sbjct: 53 GQIHDDFMDDPSPTDVITFPA------DPEMDFAGEIIVSVDHAIRKSKELDLPLTRELS 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 ++HG+LHL GYD +++ D M E+ L+ Sbjct: 107 LYLVHGWLHLAGYDDLNEADRAEMRKAEQIALD 139 >gi|58584858|ref|YP_198431.1| metal-dependent hydrolase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419174|gb|AAW71189.1| Predicted metal-dependent hydrolase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 171 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 4/126 (3%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + N K + + +S+ D + + LN +R ++KPTNVLSFP SS+ Sbjct: 46 IINASLKELKIDQYKPNISIALADDNLLHQLNLRFRQMNKPTNVLSFPCEQLSSECD--- 102 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDI ++ + + E++ H+ H+++HG LHLLGYDH + VM+ LE IL Sbjct: 103 -LGDIAISIDTVRKESDEYHIPIPAHVAHMLVHGLLHLLGYDHQKKGEEVVMKNLEGKIL 161 Query: 160 EDLGIN 165 LG N Sbjct: 162 ASLGYN 167 >gi|119357533|ref|YP_912177.1| hypothetical protein Cpha266_1736 [Chlorobium phaeobacteroides DSM 266] gi|145572761|sp|A1BH76|RRMF_CHLPD RecName: Full=Probable rRNA maturation factor gi|119354882|gb|ABL65753.1| protein of unknown function UPF0054 [Chlorobium phaeobacteroides DSM 266] Length = 142 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R L E V + V+ ++ + F+ E++V + + + I +N E+ G D PT+ ++F Sbjct: 13 RELAESVLTEVVTTVLQEEGFLIESLVAV---YCGNKMIHRINREFLGHDYPTDTITFSY 69 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + S G+ ++ + +E A F+ L+ + IH LHL GY D++ Sbjct: 70 SKGSEID------GEFYISLDAVEENALRYKVGFDEELMRVTIHSALHLAGYQDGKDEER 123 Query: 149 CVMEGLERSILEDL 162 M+ E L+ Sbjct: 124 VQMQEKEALYLKRF 137 >gi|300770444|ref|ZP_07080323.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33861] gi|300762920|gb|EFK59737.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33861] Length = 142 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 7/141 (4%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + ++ + + + +++ I F + + EL+ +F+ + +N +Y D Sbjct: 6 FFAEDTDFKPKEKQKIRQWIADTIKSEGF--KRVGELNFIFSSDAYLLEINKQYLNHDTF 63 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T++++F ++ + GDI ++ E I+ A + L ++IHG LHL GY Sbjct: 64 TDIVTFDSSEEED-----TIAGDIFISIERIQDNAEKFKVAERDELHRVVIHGVLHLCGY 118 Query: 141 DHVDDKDACVMEGLERSILED 161 +D M E L Sbjct: 119 HDKKAEDKKRMTEKEDEYLSK 139 >gi|58697454|ref|ZP_00372745.1| putative metal-dependent hydrolase [Wolbachia endosymbiont of Drosophila simulans] gi|58536113|gb|EAL59737.1| putative metal-dependent hydrolase [Wolbachia endosymbiont of Drosophila simulans] Length = 160 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 8/155 (5%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 L L++ + + W I F V N K + +S+ D + L Sbjct: 10 LMLEVNILDKKWCSIIENPK----NFVLGVINASLKELKIDHYKPNISIALADDDLLHQL 65 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++R +DKPTNVLSFP S++ LGDI ++ + I+ E++ H+ H++ Sbjct: 66 NLKFREMDKPTNVLSFPYEQLSNECD----LGDIAISIDTIKRESHEYYIPILAHIAHML 121 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 +HG LHLLGYDH + +M+ LER IL LG N Sbjct: 122 VHGLLHLLGYDHQKKDEEIIMKNLEREILASLGYN 156 >gi|227538918|ref|ZP_03968967.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33300] gi|227241121|gb|EEI91136.1| possible metal dependent hydrolase [Sphingobacterium spiritivorum ATCC 33300] Length = 142 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 7/141 (4%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + ++ + + + ++ I F + + EL+ +F+ + +N +Y D Sbjct: 6 FFAEDTDFKPKEKQKIRQWIAETIKSEGF--KRVGELNFIFSSDAYLLEINKQYLNHDTF 63 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T++++F ++ + GDI ++ E I+ A + L ++IHG LHL GY Sbjct: 64 TDIVTFDSSEEED-----TIAGDIFISIERIQDNAEKFKVAERDELHRVVIHGVLHLCGY 118 Query: 141 DHVDDKDACVMEGLERSILED 161 +D M E L Sbjct: 119 HDKKAEDKKRMTEKEDEYLSK 139 >gi|71083090|ref|YP_265809.1| hypothetical protein SAR11_0385 [Candidatus Pelagibacter ubique HTCC1062] gi|123647146|sp|Q4FNN3|RRMF_PELUB RecName: Full=Probable rRNA maturation factor gi|71062203|gb|AAZ21206.1| Conserved hypothetical protein [Candidatus Pelagibacter ubique HTCC1062] Length = 153 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 + + + E LW +I F ++ K Y + L+++ +++ I+ Sbjct: 1 MIKIDVVSECTLWSKKIKRNK----TFFNSILKFFPKKYKFIGKKINLTILLSNNKNIKK 56 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN ++R +KPT+VLSFP + S LGDIV++YE + N+ EF+ +V + Sbjct: 57 LNKDFRNKNKPTDVLSFPFE-KKFNPKKSNYLGDIVISYEFMNKPKNISILEFKQKVVKI 115 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSI 158 IHGFLHLLG+DH+ KD M E I Sbjct: 116 FIHGFLHLLGHDHIKLKDFKKMIKEEDLI 144 >gi|325954630|ref|YP_004238290.1| metalloprotease ybeY [Weeksella virosa DSM 16922] gi|323437248|gb|ADX67712.1| metalloprotease ybeY [Weeksella virosa DSM 16922] Length = 139 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + + + + ++I EL+ +F D + +N +Y D T+V+ F + Sbjct: 16 QEWIDWITNSMLEEGKSIGELNYIFCDDEYLLAINQQYLDHDYYTDVIGFDNSEND---- 71 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 ++ GDI ++ I A F+N L ++IHG LH GY + +D M E Sbjct: 72 --VLHGDIFISVTRIAENAQNNAVSFQNELARVMIHGILHFAGYLDYEKEDKAEMTAKEN 129 Query: 157 SILEDLGIN 165 L + Sbjct: 130 FYLNKFSLA 138 >gi|255037549|ref|YP_003088170.1| hypothetical protein Dfer_3801 [Dyadobacter fermentans DSM 18053] gi|254950305|gb|ACT95005.1| protein of unknown function UPF0054 [Dyadobacter fermentans DSM 18053] Length = 146 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 + + ++I + + + K + N + + + +L+ +F + +N +Y D Sbjct: 12 SFFSEDIDFKVVNPLKTKKWLKNASNSEGY---EVSQLNYIFCSDEYLLEINKQYLDHDY 68 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T++++F + + + GDI ++ + + A +F+ + ++IHG LHL G Sbjct: 69 FTDIITFDNSEEDNQ-----LEGDIYVSVDRVRENAATFHTDFDTEMRRVLIHGLLHLAG 123 Query: 140 YDHVDDKDACVMEGLERSILE 160 +D + M E L Sbjct: 124 HDDTSEALKTAMRAKEDEYLR 144 >gi|116878499|ref|YP_356652.2| hypothetical protein Pcar_1233 [Pelobacter carbinolicus DSM 2380] gi|123770478|sp|Q3A575|RRMF_PELCD RecName: Full=Probable rRNA maturation factor gi|114843135|gb|ABA88482.2| conserved hypothetical protein TIGR00043 [Pelobacter carbinolicus DSM 2380] Length = 150 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 10/150 (6%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +EN +I + TL E V + +++ + ELSL+ D I+ +N +Y Sbjct: 4 IHIENRQKNQKIAVETL-EKVAQRILND-------SECPDAELSLLIVDDIEIQQINRDY 55 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 DKPTNV+SF G +LGD++++ + +A FE+ L L++HG Sbjct: 56 LQRDKPTNVISFAMQEGEDVGLHPGLLGDVIISADTAARDAREADLPFESELYFLLLHGV 115 Query: 135 LHLLGYDHV--DDKDACVMEGLERSILEDL 162 LHLLGYDH ++DA ME E + + Sbjct: 116 LHLLGYDHERGTEEDARRMEAREAELFARI 145 >gi|42520569|ref|NP_966484.1| hypothetical protein WD0726 [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034707|ref|ZP_01314643.1| hypothetical protein Wendoof_01000541 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630499|ref|YP_002727290.1| hypothetical protein WRi_007500 [Wolbachia sp. wRi] gi|59799057|sp|Q73H48|RRMF_WOLPM RecName: Full=Probable rRNA maturation factor gi|254806603|sp|C0R3K7|RRMF_WOLWR RecName: Full=Probable rRNA maturation factor gi|42410308|gb|AAS14418.1| conserved hypothetical protein TIGR00043 [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592480|gb|ACN95499.1| conserved hypothetical protein [Wolbachia sp. wRi] Length = 150 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 8/153 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L++ + + W I F V N K + +S+ D + LN Sbjct: 2 LEVNILDKKWCSIIENPK----NFVLGVINASLKELKIDHYKPNISIALADDDLLHQLNL 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R +DKPTNVLSFP S++ LGDI ++ + I+ E++ H+ H+++H Sbjct: 58 KFREMDKPTNVLSFPYEQLSNECD----LGDIAISIDTIKRESHEYYIPILAHIAHMLVH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G LHLLGYDH + +M+ LER IL LG N Sbjct: 114 GLLHLLGYDHQKKDEEIIMKNLEREILASLGYN 146 >gi|332884625|gb|EGK04882.1| metalloprotease [Dysgonomonas mossii DSM 22836] Length = 139 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 9/140 (6%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 +E+ L ++ + + + + + ++S VF +I +N +Y D T+ Sbjct: 7 AEEVKLPSIKKRKTTDWIKLV---ATSYGKQVGDISFVFCSDKKILEVNNQYLQHDYYTD 63 Query: 83 VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 +++F ++ GDI ++ + ++ + G +E L +IIHG LHL G + Sbjct: 64 IITFDYTEND------IISGDIFISVDTVKSNSETFGTNYEEELNRIIIHGILHLCGIND 117 Query: 143 VDDKDACVMEGLERSILEDL 162 + M E L+ L Sbjct: 118 KGPGEREYMTECENKALKIL 137 >gi|149278196|ref|ZP_01884334.1| hypothetical protein PBAL39_11582 [Pedobacter sp. BAL39] gi|149230962|gb|EDM36343.1| hypothetical protein PBAL39_11582 [Pedobacter sp. BAL39] Length = 143 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 8/144 (5%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKP 80 + +E + + + IS + EL+ + + +N EY D Sbjct: 8 FFTEETTYTLKKKTIIKDWIKATISNE---GHELQELNFILCSDEYLLRINQEYLNHDTY 64 Query: 81 TNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGY 140 T+V++F + A ++ GDI ++ E I+ A G + L ++IHG LHLLGY Sbjct: 65 TDVITFDHSEA-----LKMIAGDIFISIERIQENAKNFGHTTQQELCRVMIHGTLHLLGY 119 Query: 141 DHVDDKDACVMEGLERSILEDLGI 164 +M E L L + Sbjct: 120 KDKGKAAKTLMTQKEDQYLALLSL 143 >gi|229495498|ref|ZP_04389231.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229317481|gb|EEN83381.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 152 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 7/134 (5%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + + L + A+ + + ++ + + + ELS FT+ I N + D T++L+ Sbjct: 11 VRVPHLRRQIIARWIRQVANE---MGKTLGELSYKFTNDAGILEANKLFLNHDYYTDILT 67 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + S+ S GDI+++ E + A G +E L ++IHG LHL G D Sbjct: 68 FDASQEGSEYIS----GDILISLETVASNAEKFGVPYEEELHRVLIHGVLHLSGIDDKTP 123 Query: 146 KDACVMEGLERSIL 159 ++ +M E + Sbjct: 124 EEERLMHFAEDRAI 137 >gi|46446688|ref|YP_008053.1| hypothetical protein pc1054 [Candidatus Protochlamydia amoebophila UWE25] gi|62901435|sp|Q6MCC1|RRMF_PARUW RecName: Full=Probable rRNA maturation factor gi|46400329|emb|CAF23778.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 150 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%) Query: 33 EVVFAKAVSNLISKGYFVKENIV--ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 ++ F+ A + I K KE E+++ F D+ I L+ +Y D PT+ +SFP Sbjct: 13 DLKFSLANLDAIVKEVIQKEQQTCDEVNIYFVDTATICKLHLDYFNDDTPTDCISFPM-- 70 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 + +LG+I + + A + ++HG LHL+GYD +++ D + Sbjct: 71 DKDENSPYKILGEIFVCPQTAIEYALSHELDPYEETTLYLVHGLLHLMGYDDLEENDFLI 130 Query: 151 MEGLERSILEDL 162 M+ E + L Sbjct: 131 MKEAEIRHMTHL 142 >gi|210633814|ref|ZP_03297861.1| hypothetical protein COLSTE_01778 [Collinsella stercoris DSM 13279] gi|210159074|gb|EEA90045.1| hypothetical protein COLSTE_01778 [Collinsella stercoris DSM 13279] Length = 169 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 7/155 (4%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 ++ L TL E +A++ + V VE+SL + D + LN E+RGID+ T+ Sbjct: 6 SNDAELPTLIEEDEVRAIAAHVLASEGV-AREVEISLSYVDEDEMHELNREWRGIDRTTD 64 Query: 83 VLSFPTAFASSDGCS---SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 VLSF A + + LGD++LA E+I +A G + +++HG LHLLG Sbjct: 65 VLSFECDSAFDEDIPVDEIVELGDVILAPEVIARQAPGFGNSAADECRLMLVHGLLHLLG 124 Query: 140 YDHVDDKDACVMEGLERSILEDLGI---NDPYEVD 171 YDH++D +A VME E ++L +L + DP ++ Sbjct: 125 YDHIEDDEAEVMEAREDALLRELAVMRGEDPSRIE 159 >gi|72387740|ref|XP_844294.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62359446|gb|AAX79883.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70800827|gb|AAZ10735.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 205 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 36 FAKAVSNLISKGYFVK--ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 FA V L + VELS+ F R+ LN E+RG+DKPT+VL+FP + + + Sbjct: 18 FAAGVQGLTEAVLLAERAPQAVELSIHFVTPGRMHELNLEHRGVDKPTDVLTFPGSGSGT 77 Query: 94 DGCSSLM------------------------------LGDIVLAYEIIEIEAN---VLGK 120 L LGDI + E I + + Sbjct: 78 PYAKFLNETVLLARVEGDNACVADPSVLAERRALLQELGDIYFSVEYISMRCSCRPTHCL 137 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 F ++L + H LH LGYDH + M ER + L + Sbjct: 138 RFHDYLQAALTHALLHALGYDHATPEQWKRMTKRERFLRHRLSV 181 >gi|261327447|emb|CBH10422.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 205 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 35/164 (21%) Query: 36 FAKAVSNLISKGYFVK--ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 FA V L + VELS+ F R+ LN E+RG+DKPT+VL+FP + + + Sbjct: 18 FAAGVQGLTEAVLLAERAPQAVELSIHFVTPGRMHELNLEHRGVDKPTDVLTFPGSGSGT 77 Query: 94 DGCSSLM------------------------------LGDIVLAYEIIEIEAN---VLGK 120 L LGDI + E I + + Sbjct: 78 PYAKFLNETVLLARVEGDNACVADPSVLAERRALLQELGDIYFSVEYIWMRCSCRPTHCL 137 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 F ++L + H LH LGYDH + M ER + L + Sbjct: 138 RFHDYLQAALTHALLHALGYDHATPEQWKRMTKRERFLRHRLSV 181 >gi|284040393|ref|YP_003390323.1| hypothetical protein Slin_5558 [Spirosoma linguale DSM 74] gi|283819686|gb|ADB41524.1| protein of unknown function UPF0054 [Spirosoma linguale DSM 74] Length = 137 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%) Query: 37 AKAVSNLISKGYFVKENIV-ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 +A+ + + + V +L+ +F + +N +Y D T++++F + Sbjct: 16 KQAIRQWLKQQTEAEGYSVGDLNYMFCSDEYLLQVNRDYLQHDYYTDIITFDMSEEE--- 72 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + GD+ ++ E + AN L E + ++ HG LHL GY D++A +M E Sbjct: 73 --GKIEGDVFVSVERVIDNANKLAVPAEQEMRRVLAHGLLHLCGYGDKTDEEAALMRLKE 130 Query: 156 RSILEDL 162 + L Sbjct: 131 DEWISRL 137 >gi|332879991|ref|ZP_08447675.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681987|gb|EGJ54900.1| translation metalloprotein YbeY [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 138 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 + V + + I +++ +F D + +N +Y D T++++F Sbjct: 19 VKQWVKQI---ALSEGKKIGDINYIFCDDVYLHKINVQYLQHDTLTDIITFDYTE----- 70 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + DI ++ E + A++ G FE L+ ++ HG LHL GY D+ +M E Sbjct: 71 -GITLNSDIYISIERVRENADIFGVTFEQELLRVLAHGILHLCGYKDKTPADSELMRAKE 129 Query: 156 RS 157 Sbjct: 130 DE 131 >gi|300870905|ref|YP_003785776.1| hypothetical protein BP951000_1287 [Brachyspira pilosicoli 95/1000] gi|300688604|gb|ADK31275.1| unnamed protein product [Brachyspira pilosicoli 95/1000] Length = 153 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 14/125 (11%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 +S E++LVF++ I LN ++R DK T+VL+FP A+ G Sbjct: 22 FLSHAVKAANIDGEVNLVFSNDDYIRGLNKQFRNKDKATDVLTFPMGEANEG-------G 74 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD-----DKDACVMEGLERS 157 DIV++YE + + + ++ LI+H LHL G H K+ M L + Sbjct: 75 DIVISYEWVLDRYSEDKIKMT--VIKLIVHSILHLQGIHHNYTEKSLKKNYKRMRELYKK 132 Query: 158 ILEDL 162 ILE + Sbjct: 133 ILEHI 137 >gi|145558835|sp|Q5GS35|RRMF_WOLTR RecName: Full=Probable rRNA maturation factor Length = 150 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 4/126 (3%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 + N K + + +S+ D + + LN +R ++KPTNVLSFP SS+ Sbjct: 25 IINASLKELKIDQYKPNISIALADDNLLHQLNLRFRQMNKPTNVLSFPCEQLSSECD--- 81 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 LGDI ++ + + E++ H+ H+++HG LHLLGYDH + VM+ LE IL Sbjct: 82 -LGDIAISIDTVRKESDEYHIPIPAHVAHMLVHGLLHLLGYDHQKKGEEVVMKNLEGKIL 140 Query: 160 EDLGIN 165 LG N Sbjct: 141 ASLGYN 146 >gi|161833656|ref|YP_001597852.1| hypothetical protein SMGWSS_025 [Candidatus Sulcia muelleri GWSS] gi|172048393|sp|A8Z5Q5|RRMF_SULMW RecName: Full=Probable rRNA maturation factor gi|152206145|gb|ABS30455.1| conserved hypothetical protein SMGWSS_025 [Candidatus Sulcia muelleri GWSS] Length = 141 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E E F+K + ++SK + EL+ +F D + +N +Y + T+V+ Sbjct: 7 ETKFHLYNEFYFSKWIFFVVSKENKFIK---ELNFIFCDDQYLININNKYLNKNYYTDVI 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F + + GDI ++ + I+ + K F + L +IIH LHL+GY Sbjct: 64 TFDNSEDKNLD------GDIFISIKRIKYNSLKFKKLFYDELKRVIIHAVLHLIGYKDKK 117 Query: 145 DKDACVMEGLERSIL 159 + + +M E L Sbjct: 118 ETEKYIMSKKEDIYL 132 >gi|325281349|ref|YP_004253891.1| metalloprotease ybeY [Odoribacter splanchnicus DSM 20712] gi|324313158|gb|ADY33711.1| metalloprotease ybeY [Odoribacter splanchnicus DSM 20712] Length = 143 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 + + K + + +++ ++ +F D I +N +Y D T+V++F Sbjct: 18 FSDKLICKWIEVI---AGHYNKSVGAINFIFCDDDYILAVNRQYLKHDYYTDVITFDYCE 74 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 ++ GD+ ++ + ++ + + FEN +I H LHL+G+ D D+ Sbjct: 75 GD------ILSGDVFISLDTVKSNSEMFSTFFENEFCRVICHSVLHLIGFKDKTDVDSKE 128 Query: 151 MEGLERSILEDL 162 M E L+ L Sbjct: 129 MRKNENICLDLL 140 >gi|167737213|ref|ZP_02409987.1| hypothetical protein Bpse14_04056 [Burkholderia pseudomallei 14] Length = 231 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 12/123 (9%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 P LDL + +GDEI + K ++ + F + + ++ F + Sbjct: 121 PELDLAV-----QYGDEIGDAQRKSLPKRKVIAEWLEPAIF---SDAQFTVRFVGADEGR 172 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YR D TNVL+F + + + D+VL ++E EA GK H H Sbjct: 173 ALNHSYRHKDYATNVLTFAY----GEEPDGVTVADLVLCCPVVEKEAREQGKTLVAHYAH 228 Query: 129 LII 131 L++ Sbjct: 229 LLV 231 >gi|255030168|ref|ZP_05302119.1| putative metalloprotease [Listeria monocytogenes LO28] Length = 86 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 88 TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 + D + MLGDI+++ E E +A G L L +HG LHLLGYDH++ + Sbjct: 8 IDWGEFDLETPRMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDE 67 Query: 148 ACVMEGLERSILEDLGIN 165 VM GL++ +L+ G+ Sbjct: 68 EKVMFGLQKEVLDAYGLE 85 >gi|89889741|ref|ZP_01201252.1| conserved hypothetical protein, UPF0054 family [Flavobacteria bacterium BBFL7] gi|89518014|gb|EAS20670.1| conserved hypothetical protein, UPF0054 family [Flavobacteria bacterium BBFL7] Length = 139 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 9/131 (6%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + E+ F+K + + S ++I +LS VF + +N +Y D T++++F Sbjct: 9 DFKLTDEIYFSKWLDAIASSEN---KSIGDLSYVFCTDEFLLDINQQYLNHDTLTDIITF 65 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 L+ G+I ++ + ++ A+ F L+ ++ HG LHLLGY D+ Sbjct: 66 DYCD------DQLIHGEIYISIDRVKENASDFQVTFTEELLRVMAHGLLHLLGYGDKLDE 119 Query: 147 DACVMEGLERS 157 + +M E Sbjct: 120 EKVIMRLKEDE 130 >gi|301107293|ref|XP_002902729.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262098603|gb|EEY56655.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 136 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 11/95 (11%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-------FASSDGCSSLMLGDIVLAY 108 ++ ++ T ++ LN +R DKPT++LSFP F LGDI ++ Sbjct: 42 DVGVMLTTDTHVQKLNRRFRKKDKPTDILSFPFHKVRAPGRFPRIRAREERYLGDIYISP 101 Query: 109 EIIEIEAN----VLGKEFENHLVHLIIHGFLHLLG 139 ++ + E L L+ HG HLLG Sbjct: 102 AYVQRQCEDPQLEEITTLEERLPVLMAHGLCHLLG 136 >gi|237756142|ref|ZP_04584714.1| putative metalloprotease [Sulfurihydrogenibium yellowstonense SS-5] gi|237691706|gb|EEP60742.1| putative metalloprotease [Sulfurihydrogenibium yellowstonense SS-5] Length = 111 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 5/102 (4%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E++ + + + ++S+ N VE+S+ TD+ RI +N E+RG DKPT+VL Sbjct: 15 EVYSKEITKKFLKDITEKILSELNL---NNVEISITLTDNERIRKINKEWRGKDKPTDVL 71 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 SFP + G +LGD++++ + +A +G + Sbjct: 72 SFPQ--DETIGYKYRLLGDVIISLPYAKAQAEEIGFTLKEEF 111 >gi|269102015|ref|ZP_06154712.1| predicted metal-dependent hydrolase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161913|gb|EEZ40409.1| predicted metal-dependent hydrolase [Photobacterium damselae subsp. damselae CIP 102761] Length = 78 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 47/76 (61%) Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 +LGD+V+ +++E EA K H H+++HG LHLLGYDH++D +A ME LE Sbjct: 1 MEMDLLGDLVICRQVVEREAPEQNKTLTAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALE 60 Query: 156 RSILEDLGINDPYEVD 171 I+E +G DPY + Sbjct: 61 TEIMEKMGFPDPYAAE 76 >gi|293977768|ref|YP_003543198.1| hypothetical protein DMIN_00240 [Candidatus Sulcia muelleri DMIN] gi|292667699|gb|ADE35334.1| conserved hypothetical protein TIGR00043 [Candidatus Sulcia muelleri DMIN] Length = 141 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E E F+K + ++SK + EL+ +F D + +N +Y + T+V+ Sbjct: 7 ETKFHLYNEFYFSKWIFFVVSKENKFIK---ELNFIFCDDQYLININNKYLNKNYYTDVI 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F + + GDI ++ + I+ + L K F + L +IIH LHL+GY Sbjct: 64 TFDNSEEKNLD------GDIFISIKRIKYNSLKLKKLFYDELKRVIIHAVLHLIGYKDKK 117 Query: 145 DKDACVMEGLERSIL 159 + + +M E L Sbjct: 118 ETEKYIMSKKEDIYL 132 >gi|162448297|ref|YP_001610664.1| hypothetical protein sce0028 [Sorangium cellulosum 'So ce 56'] gi|161158879|emb|CAN90184.1| hypothetical protein sce0028 [Sorangium cellulosum 'So ce 56'] Length = 201 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 35/130 (26%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF-------------ASSDGCSSL 99 VELS+ + I LN YR DKPT+VL+FP Sbjct: 55 QGVELSVALVNDEAIHELNRSYRRKDKPTDVLAFPMLDQNGADSRRRGRRGPVDPSVWRG 114 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVH-----------LIIHGFLHLLGYDHVDDKDA 148 +LGD++++ + +A + + + YDH D + Sbjct: 115 LLGDVIVSIDTAARQAAERDRPLLDEITMLLGHGLLHLLG-----------YDHKTDAEE 163 Query: 149 CVMEGLERSI 158 M L R + Sbjct: 164 REMTDLTREL 173 >gi|319953028|ref|YP_004164295.1| metalloprotease ybey [Cellulophaga algicola DSM 14237] gi|319421688|gb|ADV48797.1| metalloprotease ybeY [Cellulophaga algicola DSM 14237] Length = 139 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ E +A ++ +I +++ LS +F D + +N +Y D T+++ Sbjct: 7 ELDFELSNEPYYADWLTRVIESE---GKSLGNLSYIFCDDAYLLDINMKYLDHDTYTDIV 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F + GD+ ++ E + A +F L ++ HG LHL GY Sbjct: 64 TFDYCEGDTIA------GDLFISIERVLENAKEYNVDFLEELHRVMSHGVLHLAGYKDKT 117 Query: 145 DKDACVMEGLERS 157 D DA +M E Sbjct: 118 DMDAALMRKKEEE 130 >gi|255550974|ref|XP_002516535.1| Phosphatase yidA, putative [Ricinus communis] gi|223544355|gb|EEF45876.1| Phosphatase yidA, putative [Ricinus communis] Length = 595 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 16/139 (11%) Query: 4 KKVNLPRLDLQIAVENALWGDEIH------LRTLCEVVFAKAVSNLISKGYFVKE----- 52 K N ++D+ I +E+ L D LR + A L Y ++ Sbjct: 109 TKENELQIDVSICIEDDLPDDPEILSISELLRLNVPMAMKLAFDGLKDSNYKTRDTAISD 168 Query: 53 ----NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAY 108 VELS++ + I LN ++R D T+VLS LMLGDIV++ Sbjct: 169 IGGFQSVELSVLLCNDDFIRKLNKDWRDEDHATDVLSMSQHVPGL-KLPVLMLGDIVISV 227 Query: 109 EIIEIEANVLGKEFENHLV 127 E +A G + + Sbjct: 228 ETAARQAEERGLSLIDEIR 246 >gi|218247079|ref|YP_002372450.1| hypothetical protein PCC8801_2275 [Cyanothece sp. PCC 8801] gi|257060149|ref|YP_003138037.1| hypothetical protein Cyan8802_2326 [Cyanothece sp. PCC 8802] gi|218167557|gb|ACK66294.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 8801] gi|256590315|gb|ACV01202.1| protein of unknown function UPF0054 [Cyanothece sp. PCC 8802] Length = 178 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 10/164 (6%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLIS--KGYFVKENIVELSLVFTDSHRI 67 L+LQ + + D+ + + + + K + EL+L T+ I Sbjct: 12 DLNLQNVFDFNAFCDQKSSDIMA-ATWQPWIKTWLEALKPNLPPADTYELTLRLTEDLEI 70 Query: 68 ETLNFEYRGIDKPTNVLS-------FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 +TLN +YR ++PT+VL+ FP L LGDI+++ E +A Sbjct: 71 QTLNAQYRQKNQPTDVLAFAALEVDFPVPAEEIAALEPLYLGDIIISVETANKQAQQNHH 130 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 L L HG LHLLG+DH D+ M + ++L +G+ Sbjct: 131 SLLVELAWLAAHGLLHLLGWDHPDEDSLEAMLSQQETLLTLVGL 174 >gi|83816771|ref|YP_446198.1| hypothetical protein SRU_2092 [Salinibacter ruber DSM 13855] gi|294508126|ref|YP_003572184.1| Conserved hypothetical protein containing UPF0054 [Salinibacter ruber M8] gi|123528328|sp|Q2S0T3|RRMF_SALRD RecName: Full=Probable rRNA maturation factor gi|83758165|gb|ABC46278.1| conserved hypothetical protein TIGR00043 [Salinibacter ruber DSM 13855] gi|294344454|emb|CBH25232.1| Conserved hypothetical protein containing UPF0054 [Salinibacter ruber M8] Length = 157 Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 3/108 (2%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAYEIIEI 113 LSLV TD + LN Y D T+VLSF + + G++ + + Sbjct: 43 LSLVLTDHDTVRRLNQSYLDHDYDTDVLSFSLREGPAPSSGASGEGIEGEVYVDLDTAAE 102 Query: 114 EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + FE ++HG LHL+GYD M E L Sbjct: 103 RHDEFDTSFEREAYRYVVHGLLHLVGYDDAQPAGQDKMREKEDQYLNA 150 >gi|193215488|ref|YP_001996687.1| hypothetical protein Ctha_1783 [Chloroherpeton thalassium ATCC 35110] gi|238692691|sp|B3QTP2|RRMF_CHLT3 RecName: Full=Probable rRNA maturation factor gi|193088965|gb|ACF14240.1| protein of unknown function UPF0054 [Chloroherpeton thalassium ATCC 35110] Length = 141 Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + L E KA+ ++ E E+S V+ I +N E+ D PT+ +SF Sbjct: 11 QELPEEKIRKAIELVLQGEKCEAE---EISAVYCGDRLIRKINIEHLAHDYPTDTISF-- 65 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + + G+ ++ + + A FEN L+ + IH LHL+G++ Sbjct: 66 ----RLNSGNAIEGEFYISCDTVRRNAQEYESSFENELLRVTIHSVLHLIGFEDQSAAQK 121 Query: 149 CVMEGLERSILEDL 162 M E L L Sbjct: 122 AEMTQKENRYLAAL 135 >gi|307128532|ref|YP_003880562.1| hypothetical protein SMCARI_030 [Candidatus Sulcia muelleri CARI] gi|306482994|gb|ADM89864.1| conserved hypothetical protein [Candidatus Sulcia muelleri CARI] Length = 141 Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 9/132 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E E++F+K + ++SK K+NI EL+ +F D + + +N +Y + T+V+ Sbjct: 7 ETKFHLYNEILFSKFIFFVVSKE---KKNIKELNFIFCDDNYLININKKYINKNNYTDVI 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F + + GDI L+ + I+ + K F N L ++IH LHL+GY + Sbjct: 64 TFENYENKN------LYGDIFLSIKRIKYNSFKFKKLFFNELKRVMIHAVLHLIGYKDKN 117 Query: 145 DKDACVMEGLER 156 + +M E Sbjct: 118 KFEKKIMYKKEN 129 >gi|327403529|ref|YP_004344367.1| metalloprotease ybeY [Fluviicola taffensis DSM 16823] gi|327319037|gb|AEA43529.1| metalloprotease ybeY [Fluviicola taffensis DSM 16823] Length = 146 Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 6/108 (5%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEII 111 +++ ++SL+F + +N EY D T++++F L+ GD+ ++ + + Sbjct: 33 KSLGDISLIFCSDEHLLEMNREYLQHDFFTDIITFDYTEED------LVSGDLFISVDRV 86 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 A+ F++ L + +HG LHL GY D+D +M E +L Sbjct: 87 RDNADEFDVLFQDELHRVCVHGLLHLCGYKDKSDEDEKLMRQKENDML 134 >gi|325105734|ref|YP_004275388.1| protein of unknown function UPF0054 [Pedobacter saltans DSM 12145] gi|324974582|gb|ADY53566.1| protein of unknown function UPF0054 [Pedobacter saltans DSM 12145] Length = 145 Score = 99.7 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 51 KENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEI 110 K+ + EL+ + + +N EY D T++++F + ++ GD+ ++ E Sbjct: 35 KKELQELNFILCSDEYLLKINQEYLNHDTYTDIITFDNSEDE-----GMIYGDVFISIER 89 Query: 111 IEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 ++ A + G + + L +IIHG LHLLGY ++ +M E L Sbjct: 90 VKENARIFGVKTADELHRVIIHGTLHLLGYPDKKKQEKALMTEKENFYLSK 140 >gi|218513639|ref|ZP_03510479.1| hypothetical protein Retl8_07906 [Rhizobium etli 8C-3] Length = 92 Score = 99.4 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVF-AKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + LD+QI++EN W +E L C V A AV S+ E+SLVFTD Sbjct: 1 MAELDIQISIENIGWPEEETLLAFCGRVLGAAAVYLRDSEKQPFPTMPPEVSLVFTDDAS 60 Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASSDGCSS 98 I+ +N E+RG DK TNVLSFP Sbjct: 61 IQDINAEWRGKDKATNVLSFPAFPVQPGKMPG 92 >gi|297597588|ref|NP_001044196.2| Os01g0739400 [Oryza sativa Japonica Group] gi|255673671|dbj|BAF06110.2| Os01g0739400 [Oryza sativa Japonica Group] Length = 251 Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 4/113 (3%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N +I L L + + +++ G + K VE+S++ + + I+ LN E+RG D Sbjct: 138 NVPMAMKIALDGLLDSNYKTRDTSISDVGRYDK---VEVSVLLCNDNFIQNLNKEWRGED 194 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLII 131 +LS D LMLGDIV++ E +A G + + L + Sbjct: 195 SCIEMLSMSQYIPDLD-VPILMLGDIVISVETAARQAEERGHTLLDEVRILAV 246 >gi|255529923|ref|YP_003090295.1| hypothetical protein Phep_0007 [Pedobacter heparinus DSM 2366] gi|255342907|gb|ACU02233.1| protein of unknown function UPF0054 [Pedobacter heparinus DSM 2366] Length = 142 Score = 98.2 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 8/130 (6%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS 92 + + + I++ +V EL+ + + +N +Y D T+V++F A Sbjct: 20 KTQIKDWIRSAIAEEGYVLR---ELNFILCSDEYLLRINQDYLQHDTYTDVITFDNAEE- 75 Query: 93 SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVME 152 ++GDI ++ E ++ A L L ++IHG LHLLGY M Sbjct: 76 ----LKTIVGDIFISIERVQENARALKLPVAEELCRVMIHGTLHLLGYKDKGKAAKATMT 131 Query: 153 GLERSILEDL 162 E L L Sbjct: 132 TREDHHLAKL 141 >gi|88801787|ref|ZP_01117315.1| hypothetical protein PI23P_03972 [Polaribacter irgensii 23-P] gi|88782445|gb|EAR13622.1| hypothetical protein PI23P_03972 [Polaribacter irgensii 23-P] Length = 137 Score = 98.2 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 6/108 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 EL+ +F D + LN E+ D T+++SF + L+ GDI ++ E + A Sbjct: 35 ELNYIFCDDAYLLKLNVEFLQHDTFTDIISF------DNSIGKLISGDIFISTERVAENA 88 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 F+ L ++IHG LH +G+ ++ M E + L L Sbjct: 89 TDYKVSFQEELQRVMIHGVLHCVGFKDKTMEEQEEMTRQENTALLVLN 136 >gi|308808316|ref|XP_003081468.1| Protein of unknown function UPF0054 (ISS) [Ostreococcus tauri] gi|116059931|emb|CAL55990.1| Protein of unknown function UPF0054 (ISS) [Ostreococcus tauri] Length = 122 Score = 98.2 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 35/65 (53%), Positives = 43/65 (66%) Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 A+E EA G FE H+ HLI+HG LHLLGYDH+ D DA +ME LE IL +LG+ + Sbjct: 52 AWETCGREAAEQGIAFEQHVTHLIVHGVLHLLGYDHMRDADATLMERLEAEILGNLGLPN 111 Query: 167 PYEVD 171 PY D Sbjct: 112 PYGED 116 >gi|321311000|ref|YP_004193329.1| hypothetical protein HF1_14820 [Mycoplasma haemofelis str. Langford 1] gi|319802844|emb|CBY93490.1| conserved hypothetical protein [Mycoplasma haemofelis str. Langford 1] Length = 132 Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 17/126 (13%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS 97 +A+ + + + + VEL++ + I +LN YR DK T+VLSFP S + Sbjct: 22 EAIYAHLKDRFLIPDCEVELAI--VNEEEIRSLNATYRNQDKVTDVLSFPVKTESHE--- 76 Query: 98 SLMLGDIVLAY-EIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 LG I Y E+I ++F + +L IH FLHLLGY+H M L+ Sbjct: 77 -RFLGAIYFCYSEVINRN-----EDFLSGFCYLFIHSFLHLLGYEHG-----EEMFSLQD 125 Query: 157 SILEDL 162 I Sbjct: 126 EIFSRF 131 >gi|323359831|ref|YP_004226227.1| metal-dependent hydrolase [Microbacterium testaceum StLB037] gi|323276202|dbj|BAJ76347.1| predicted metal-dependent hydrolase [Microbacterium testaceum StLB037] Length = 155 Score = 98.2 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+ DE L L E A+ ++++V D +E+L Sbjct: 1 MTIEINNESGYDIDEQVLLRLMEYNLAE----------LHVSADADVAIVLVDEGAMESL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHL 126 + ++ PT+VLSFP + + +LGDIVL + E +A ++ L Sbjct: 51 HVQWMDEPGPTDVLSFPMDELRPGSEDAPTPAGLLGDIVLCPSVAEAQAVTAQHSTQDEL 110 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + L HG LHLLG+DH + + M GL+R ++ Sbjct: 111 ILLTTHGLLHLLGFDHAEPDEEREMFGLQRELITGF 146 >gi|296126703|ref|YP_003633955.1| hypothetical protein Bmur_1670 [Brachyspira murdochii DSM 12563] gi|296018519|gb|ADG71756.1| protein of unknown function UPF0054 [Brachyspira murdochii DSM 12563] Length = 145 Score = 97.8 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 + V E +++L+F D I+ LN ++R +K T+VL+FP G Sbjct: 21 FLYNSLIVSEVKGDVNLLFCDDEYIKKLNNDFRNKNKATDVLTFPMGDDDEG-------G 73 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 DIV++YE ++ + + ++ LIIH LHL G H K +ME E+ +++L Sbjct: 74 DIVISYEWVKNRYSEDKIKKT--VLKLIIHSILHLKGIHHNYSK-KSLMENNEK--MKEL 128 >gi|326488921|dbj|BAJ98072.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 590 Score = 97.8 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 18/129 (13%) Query: 15 IAVENALWGDEIHLRTLCEV-------VFAKAVSNLISKGY---------FVKENIVELS 58 I+VE+ L D+I + + E+ A+ L+ Y K VE+S Sbjct: 113 ISVEDDL-PDDIEVLNIIEIMKLNVPMAMKIALDGLLEYNYKTRDTSISNIGKYEKVEVS 171 Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 ++ + + I+ LN E+RG D T++LS D +LMLGDIV++ E +A Sbjct: 172 VLVCNDNFIQNLNKEWRGEDCATDMLSVSQFIPDLD-VPTLMLGDIVISVETAARQAEAR 230 Query: 119 GKEFENHLV 127 G + L Sbjct: 231 GHTLLDELR 239 >gi|223940463|ref|ZP_03632314.1| protein of unknown function UPF0054 [bacterium Ellin514] gi|223890866|gb|EEF57376.1| protein of unknown function UPF0054 [bacterium Ellin514] Length = 159 Score = 97.8 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 5/136 (3%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 H R + A LIS + ++++ + +N ++ T+V++F Sbjct: 12 HTRLIDRRWLRWATKELISD--LLHFEDFDVTIHLVGEREMTRINEKHLQHAGSTDVITF 69 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + + S ++G++ + + ++A +++ + I+HG LHL GYD ++ Sbjct: 70 DYSDSPG---SEPLIGELFICVDEALVQAIRFKTTWQSETMRYIVHGLLHLKGYDDLETT 126 Query: 147 DACVMEGLERSILEDL 162 M+ E +L++L Sbjct: 127 ARRKMKREENKLLKEL 142 >gi|312129899|ref|YP_003997239.1| hypothetical protein Lbys_1166 [Leadbetterella byssophila DSM 17132] gi|311906445|gb|ADQ16886.1| protein of unknown function UPF0054 [Leadbetterella byssophila DSM 17132] Length = 152 Score = 97.4 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 9/139 (6%) Query: 25 EIHLRTLCEVVFAK-AVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E+ L E K + NLI + + EL+ +F + +N +Y T++ Sbjct: 17 EVEGFRLTERTKKKSWLKNLIQSH---GKKVGELNYIFLSDEDLLEINIQYLDHHTYTDI 73 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHV 143 ++F + ++ GDI ++ + + A FE L+ ++ HG LHLLG Sbjct: 74 ITFDNSEEE-----KMIEGDIFISVDRVRENAQTFKVSFEQELLRVMAHGVLHLLGLKDK 128 Query: 144 DDKDACVMEGLERSILEDL 162 ++D+ +M E + Sbjct: 129 TEEDSKLMRAGEEKAIAAY 147 >gi|225620349|ref|YP_002721606.1| putative metal-dependent hydrolase [Brachyspira hyodysenteriae WA1] gi|511147|emb|CAA51656.1| unnamed protein product [Brachyspira hyodysenteriae] gi|225215168|gb|ACN83902.1| putative metal-dependent hydrolase [Brachyspira hyodysenteriae WA1] Length = 141 Score = 97.0 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 16/113 (14%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYE-IIEIE 114 E++L+F D I+ LN ++R DK T+VL+FP + GDIV++YE ++ Sbjct: 34 EVNLLFCDDEYIKNLNRQFRNKDKATDVLTFPMGDINEG-------GDIVISYEWVVTRY 86 Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDD-----KDACVMEGLERSILEDL 162 ++ K+ ++ LIIH LHL G H ++ M+ L + +++ + Sbjct: 87 SDEKIKKT---VLKLIIHSILHLKGIHHNYTRKSLMENNKKMKELYKKVIKTI 136 >gi|114326780|ref|YP_743937.1| putative cytoplasmic protein [Granulibacter bethesdensis CGDNIH1] gi|122328235|sp|Q0BVY8|RRMF_GRABC RecName: Full=Probable rRNA maturation factor gi|114314954|gb|ABI61014.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1] Length = 176 Score = 97.0 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 6/130 (4%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 LI + + + ++ D + LN +RG DKPTNVL+F G Sbjct: 51 ADRLIRRVARAAGSTADCVVLSCDRD-VRRLNARHRGKDKPTNVLTF-----EPVGMPGA 104 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 G+IVLA ++ EA K +HL HL++HG LHL G+DH DA ME E I+ Sbjct: 105 EGGEIVLALGVVLREAKAARKRPVHHLAHLLVHGVLHLHGHDHHHAGDARRMEAEEARIM 164 Query: 160 EDLGINDPYE 169 LG+ +P++ Sbjct: 165 RSLGMPNPWK 174 >gi|224372821|ref|YP_002607193.1| putative metalloprotease [Nautilia profundicola AmH] gi|254806612|sp|B9L985|RRMF_NAUPA RecName: Full=Probable rRNA maturation factor gi|223589812|gb|ACM93548.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 139 Score = 97.0 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 7/110 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ L+ TD I+ LN ++R DK T+VLSFP + + LG IV++ + + A Sbjct: 28 DIELILTDDEEIKELNSQFRNKDKATDVLSFPL-----EAMPGMPLGSIVISIDTAKKGA 82 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G ++ + L +HG LHLLGYDH D M E I++ L + Sbjct: 83 EEFGHSVDDEIRLLFLHGLLHLLGYDHETDN--GEMRAKEEEIIKKLNLP 130 >gi|150020475|ref|YP_001305829.1| hypothetical protein Tmel_0577 [Thermosipho melanesiensis BI429] gi|172048663|sp|A6LKJ3|RRMF_THEM4 RecName: Full=Probable rRNA maturation factor gi|149792996|gb|ABR30444.1| protein of unknown function UPF0054 [Thermosipho melanesiensis BI429] Length = 138 Score = 97.0 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 12/119 (10%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 V ++LVF +I+ +N E+R I+ T+VL+F + +I L ++IE Sbjct: 26 KEVNINLVFLSKEKIKKINREFRNINSETDVLTFVYGDDD-------LFAEIYLCEDVIE 78 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK-DACVMEGLE----RSILEDLGIND 166 A +E L+ ++IH LH GYDH DK +A M L+ L+ G+++ Sbjct: 79 ENAKKFSNTYEKELLMVLIHAALHCSGYDHEYDKTNAKKMFDLQERYYEKYLKKYGMDN 137 >gi|291514792|emb|CBK64002.1| conserved hypothetical protein TIGR00043 [Alistipes shahii WAL 8301] Length = 145 Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 8/146 (5%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 + D+ R + + A+ + + + + + +++ +F + R+ +N +Y G D T Sbjct: 6 FTDDCTYRLPQKRLTARWLHEVAAGEGYA---LGDVTYIFCSAQRLLEMNRQYLGHDYFT 62 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 +V++F S + ++ GDI + E + A G + +++HG LHL G Sbjct: 63 DVITFDY---SDRKGARIVSGDIFIDVETVADNARQYGATTLQEMRRVVVHGILHLCGQG 119 Query: 142 HVDDKDACVMEGLERSILEDLGINDP 167 + M E L+ DP Sbjct: 120 DKTPRTNAQMHRKEDKYLKFW--EDP 143 >gi|284044304|ref|YP_003394644.1| hypothetical protein Cwoe_2850 [Conexibacter woesei DSM 14684] gi|283948525|gb|ADB51269.1| protein of unknown function UPF0054 [Conexibacter woesei DSM 14684] Length = 138 Score = 96.7 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 19/109 (17%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLM-----LGDIVLAYEII 111 +++ F D+ I+TLN ++RG D PT+VLSFP + + LGD+V+ Sbjct: 40 VAVAFVDAETIQTLNRDHRGRDAPTDVLSFPIDGIDGEALRQIPAAQRELGDVVICP--- 96 Query: 112 EIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 L ++HG LHL G DH D M L+ +L Sbjct: 97 ---------PHTEDLSEAVVHGALHLTGMDHEVDD--GEMLALQAELLR 134 >gi|187734775|ref|YP_001876887.1| protein of unknown function UPF0054 [Akkermansia muciniphila ATCC BAA-835] gi|187424827|gb|ACD04106.1| protein of unknown function UPF0054 [Akkermansia muciniphila ATCC BAA-835] Length = 165 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 9/108 (8%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ + I ++ + T+V++FP +G+I+++++ +A Sbjct: 51 EVEISVVSDDVIRDVHARFLNDPTATDVITFPHGDG---------IGEIIVSFDTAIRQA 101 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + + L ++HG LHL GY + ++ M + ++ G Sbjct: 102 SEFREPVFRELFRYMVHGLLHLHGYIDTEPEERERMFSCQEPLVRKFG 149 >gi|171912516|ref|ZP_02927986.1| hypothetical protein VspiD_15090 [Verrucomicrobium spinosum DSM 4136] Length = 141 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 46/106 (43%), Gaps = 13/106 (12%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+ V I ++ ++ PT+V++F G+I+++ + + +A Sbjct: 46 EVDFVLVSDRTIAKVHGDFLDDPTPTDVITF-------------HHGEILISLDTAQKQA 92 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 + ++ + ++HG LHL G+ + + M ++ IL+ Sbjct: 93 ADHNESYDREVARYMVHGLLHLAGWSDYEPAERTEMHRIQEEILDA 138 >gi|190570991|ref|YP_001975349.1| conserved hypothetical protein TIGR00043 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019508|ref|ZP_03335314.1| hypothetical protein C1A_162 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238058883|sp|B3CLC0|RRMF_WOLPP RecName: Full=Probable rRNA maturation factor gi|190357263|emb|CAQ54687.1| conserved hypothetical protein TIGR00043 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994930|gb|EEB55572.1| hypothetical protein C1A_162 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|222825043|dbj|BAH22201.1| hypothetical protein [Wolbachia endosymbiont of Cadra cautella] Length = 152 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 L++++ + W H T F + N K + +S+ D + + LN Sbjct: 2 LEVSILDKRW----HSITKDPQSFVLNIINASLKELKIDHYKPNISIALADDNLLHQLNL 57 Query: 73 EYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIH 132 ++R IDKPTNVLSFP SS+ LGDI +A + IE E++ H H+++H Sbjct: 58 KFREIDKPTNVLSFPCEQLSSECD----LGDIAIAVDTIERESHEYCISILTHTAHMLVH 113 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDL 162 G LHLLGYDH + + +M+ LE IL L Sbjct: 114 GLLHLLGYDHQKEDEEIIMKSLESKILALL 143 >gi|258405852|ref|YP_003198594.1| hypothetical protein Dret_1732 [Desulfohalobium retbaense DSM 5692] gi|257798079|gb|ACV69016.1| protein of unknown function UPF0054 [Desulfohalobium retbaense DSM 5692] Length = 144 Score = 96.3 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 9/115 (7%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 + G + + L + T I LN Y G PTNVLSFP + G Sbjct: 33 AVQIGNILGLSTASLDIRITTDFGIAGLNARYLGCVGPTNVLSFPNEYGG---------G 83 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 +VL + + EA + ++ H V L+ HG LHL G DH DA +E++ Sbjct: 84 SLVLNAQAVAREAWLYAQDPLEHWVRLVAHGLLHLYGLDHGPAMDAATETAVEQA 138 >gi|256419792|ref|YP_003120445.1| hypothetical protein Cpin_0746 [Chitinophaga pinensis DSM 2588] gi|256034700|gb|ACU58244.1| protein of unknown function UPF0054 [Chitinophaga pinensis DSM 2588] Length = 140 Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 5/103 (4%) Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 VF + +N ++ D T++++F + G+I ++ + + A Sbjct: 41 VFCSDEYLLEINQQFLQHDTLTDIVTFEMGEDPD-----VTEGEIYISVDRVRENAEKFK 95 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E L +I HG LHL GY + M +E LE Sbjct: 96 VTEEQELHRVIFHGALHLCGYKDKTKDQSAKMRQMENQCLEQY 138 >gi|167753840|ref|ZP_02425967.1| hypothetical protein ALIPUT_02125 [Alistipes putredinis DSM 17216] gi|167658465|gb|EDS02595.1| hypothetical protein ALIPUT_02125 [Alistipes putredinis DSM 17216] Length = 148 Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 6/141 (4%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 + D+ R + + A + + + + + +++ +F + R+ +N ++ G D T Sbjct: 6 YTDDCTYRLPQKRLTAAWLDRVAREEGY---ELGDVTYIFCSAARLLDMNRQFLGHDYYT 62 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 +V++F S + ++ GDI + E + A G + +++HG LHL G Sbjct: 63 DVITFDY---SDRKGARIVSGDIFIDVETVADNAREYGAAKLTEMRRVVVHGLLHLCGQK 119 Query: 142 HVDDKDACVMEGLERSILEDL 162 + M E L Sbjct: 120 DKTPRANAQMHRKEDHYLRQW 140 >gi|193212442|ref|YP_001998395.1| hypothetical protein Cpar_0779 [Chlorobaculum parvum NCIB 8327] gi|238692633|sp|B3QMP2|RRMF_CHLP8 RecName: Full=Probable rRNA maturation factor gi|193085919|gb|ACF11195.1| protein of unknown function UPF0054 [Chlorobaculum parvum NCIB 8327] Length = 141 Score = 95.5 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 RT+ E + A+A+ +I + + + ++ + I +N ++ D T+ ++F Sbjct: 11 RTIDEALLAEAIQLVIGEEGG---KVGSIEAIYCGNKMIRRINRDFLNHDYATDTITFGY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G+ ++ ++IE A G FE+ L+ + IH LHL+GYD + Sbjct: 68 NE------GGEVEGEFYISLDVIESNARRFGVMFEDELLRVTIHSALHLMGYDDETPELR 121 Query: 149 CVMEGLERSILEDL 162 M E L+ + Sbjct: 122 IAMSRREDLYLDRI 135 >gi|332704887|ref|ZP_08424975.1| metalloprotease ybeY [Desulfovibrio africanus str. Walvis Bay] gi|332555036|gb|EGJ52080.1| metalloprotease ybeY [Desulfovibrio africanus str. Walvis Bay] Length = 157 Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 17/117 (14%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCS------------SLMLGDIVL 106 L D I N + G PTNVLSFP ++ LG+IVL Sbjct: 44 LHLVDDADIARRNAAFMGCVGPTNVLSFPAGSGDTEETDVADVADVFEEGQDHWLGEIVL 103 Query: 107 AYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 + + +E EA + G++ HLV L+ H LHL G+DH +M+ L +E LG Sbjct: 104 SVDTLEREAFLYGQQPREHLVRLLAHAVLHLAGHDHG-----EIMDALTEQAVEALG 155 >gi|299139982|ref|ZP_07033152.1| protein of unknown function UPF0054 [Acidobacterium sp. MP5ACTX8] gi|298597982|gb|EFI54150.1| protein of unknown function UPF0054 [Acidobacterium sp. MP5ACTX8] Length = 192 Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 27/153 (17%) Query: 25 EIHLRTLCEVVFAKA-VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 E E+ ++A + + E+ ++ +D + LN E+RG DK T+V Sbjct: 11 EASADPWGELGLSRAGLGRFVRTAQAAVGLRGEVEVLLSDDRTLRRLNREFRGKDKATDV 70 Query: 84 LSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV----------HLIIHG 133 LSFP + GD+ ++ + +A G + + + Sbjct: 71 LSFPA----PPELEGQLAGDLAISLDTALKQAQEQGHTLRDEVRVLLLHGLLHLY----- 121 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 G DH D+ M E + L + + Sbjct: 122 -----GMDHEVDE--GEMAAREAVLRTQLRLRN 147 >gi|239917734|ref|YP_002957292.1| conserved hypothetical protein TIGR00043 [Micrococcus luteus NCTC 2665] gi|281413771|ref|ZP_06245513.1| hypothetical protein MlutN2_00957 [Micrococcus luteus NCTC 2665] gi|259645756|sp|C5CCC6|RRMF_MICLC RecName: Full=Probable rRNA maturation factor gi|239838941|gb|ACS30738.1| conserved hypothetical protein TIGR00043 [Micrococcus luteus NCTC 2665] Length = 157 Score = 95.1 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+ + E L + V+A+ E ++ D+ R+ L Sbjct: 1 MAVEILNESGIEVPEDALLRMARHVYAR----------LHVHERAETAVTVVDAARMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + E+ + PT+V+S P S + + +LGD+VL E+ +A G ++ L+ Sbjct: 51 HEEWMDLPGPTDVMSLPMDELTPGSPEAPAEGVLGDVVLCPEVAAEQAARGGHSRDDELL 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDP 167 L+ HG LHLLGYDHV+D + M L+ ++ + LG P Sbjct: 111 LLLTHGMLHLLGYDHVEDAEREEMFTLQDRLVSEVLGRPAP 151 >gi|297621266|ref|YP_003709403.1| hypothetical protein wcw_1038 [Waddlia chondrophila WSU 86-1044] gi|297376567|gb|ADI38397.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044] Length = 153 Score = 94.7 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 3/107 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E+S+ F D+ I L+ + T+ +SFP +LG++ + + A Sbjct: 36 EVSIQFVDTQMICDLHHRFFNDPTVTDCISFPI--DQDGDTGYRVLGEVFVCPKTGIDYA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 K + IIHG LHL+GYD + + + M E+ L L Sbjct: 94 QEHLKNPYEEISLYIIHGLLHLMGYDDIGEDEPR-MREAEKRHLAHL 139 >gi|225156450|ref|ZP_03724786.1| protein of unknown function UPF0054 [Opitutaceae bacterium TAV2] gi|224802958|gb|EEG21204.1| protein of unknown function UPF0054 [Opitutaceae bacterium TAV2] Length = 179 Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ELSL F + L+ ++ T+V++F ++ G S G+I ++ + A Sbjct: 50 ELSLAFLSDAALARLHADFLDDPTTTDVITF----EATPGMGSA--GEICVSVDTAARYA 103 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 G +F L I+HG+LHL GYD + M E+ + L Sbjct: 104 REHGHDFAEELALYIVHGWLHLAGYDDLQPMKKRRMRAAEKRAIALL 150 >gi|313813039|gb|EFS50753.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL025PA1] gi|327330796|gb|EGE72542.1| putative metalloprotease [Propionibacterium acnes HL097PA1] Length = 155 Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 14/154 (9%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ +E L L + ELS++ D +E + Sbjct: 2 IDITNESGSPSNEEGLVGLATFALD----------WLRIHPSSELSIILVDEETMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 ++ G+ PT+VLSFP + S +LGDIVL + +A G+ + + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTPDGEAEY 111 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L+IHG LHLLGYDH + + VM L I+ Sbjct: 112 LLIHGLLHLLGYDHAEPGEKRVMFRLNDEIIAAW 145 >gi|296122481|ref|YP_003630259.1| hypothetical protein Plim_2234 [Planctomyces limnophilus DSM 3776] gi|296014821|gb|ADG68060.1| protein of unknown function UPF0054 [Planctomyces limnophilus DSM 3776] Length = 163 Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 20/143 (13%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D++I D + ++ + ++ F + E+S+ D+ +I Sbjct: 1 MIDIEIT-------DHQSIASIDPKPIQTLLKHVFETEGFPE---AEISIALVDNQQIHK 50 Query: 70 LNFEYRGIDKPTNVLSFPTAFASS----------DGCSSLMLGDIVLAYEIIEIEANVLG 119 +N ++ D PT+V+SF + ++G+++++ E A Sbjct: 51 VNRDFLNHDYPTDVISFVLNGSEDSVSHNHDHADPDFPEPLIGEVIVSVETAAGMAAENN 110 Query: 120 KEFENHLVHLIIHGFLHLLGYDH 142 + ++ +HG LHL GYD Sbjct: 111 WCIASEVLLYCLHGSLHLCGYDD 133 >gi|86144117|ref|ZP_01062454.1| hypothetical protein MED217_18401 [Leeuwenhoekiella blandensis MED217] gi|85829379|gb|EAQ47844.1| hypothetical protein MED217_18401 [Leeuwenhoekiella blandensis MED217] Length = 137 Score = 94.7 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 7/124 (5%) Query: 38 KAVSNLISKGYFVKENIVE-LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + V + + + ++ L VF + +N ++ D T++++F Sbjct: 16 ERVESWLKAAALKESYGIDSLGYVFCSDDFLLEINQQFLDHDTLTDIVTFDYTE------ 69 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 +++ G+I ++ + + A +F+ L +IIHG LH+ GY D + M E Sbjct: 70 GTILNGEIYISTDRVADNAKDFNVDFDTELRRVIIHGLLHMCGYGDKTDDEKSNMRKKED 129 Query: 157 SILE 160 L Sbjct: 130 EYLA 133 >gi|313206593|ref|YP_004045770.1| hypothetical protein Riean_1103 [Riemerella anatipestifer DSM 15868] gi|312445909|gb|ADQ82264.1| protein of unknown function UPF0054 [Riemerella anatipestifer DSM 15868] gi|315022088|gb|EFT35117.1| predicted metal-dependent hydrolase [Riemerella anatipestifer RA-YM] gi|325335965|gb|ADZ12239.1| uncharacterized protein family UPF0054 [Riemerella anatipestifer RA-GD] Length = 137 Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 9/121 (7%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 +K + +I + + + +++ +F D + +N ++ D T++++F ++ Sbjct: 18 ISKWLEQIILSEH---KKLGKINYIFCDDEYLLKINQDHLQHDYYTDIITFDYVRGNTIS 74 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 GDI ++ I A+ L K++++ + ++ HG LHL GY ++D M E Sbjct: 75 ------GDIFVSLPRISDNASTLSKDYQSEFLRVLAHGVLHLCGYKDKTEEDIKEMRNKE 128 Query: 156 R 156 Sbjct: 129 D 129 >gi|17061813|gb|AAK74139.1| C21orf57 isoform B protein [Homo sapiens] gi|119629700|gb|EAX09295.1| chromosome 21 open reading frame 57, isoform CRA_g [Homo sapiens] Length = 256 Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 37/111 (33%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +L ++ D+ I+ +N YR + PT+VLSFP Sbjct: 165 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHE---------------------- 202 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 HG HLLG+ H + + M E+++L++LG Sbjct: 203 ---------------VTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 238 >gi|313157525|gb|EFR56943.1| translation metalloprotein YbeY [Alistipes sp. HGB5] Length = 143 Score = 94.3 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++S +F + R+ +N +Y G D T+V++F S + ++ GDI + E + A Sbjct: 37 DVSYIFCSAQRLLEMNRQYLGHDYFTDVITFDY---SDRKGARVISGDIFIDVETVADNA 93 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 + G + +++HG LHL G + M E L+ Sbjct: 94 RLYGFSTLQEMRRVVVHGVLHLCGQGDKTPRTNAQMHRKEDKYLK 138 >gi|309807569|ref|ZP_07701521.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 01V1-a] gi|308169175|gb|EFO71241.1| translation metalloprotein YbeY [Lactobacillus iners LactinV 01V1-a] Length = 92 Score = 94.0 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDD 145 F + D +GD+ + E++E A F + ++HG+LHL GYDH+ D Sbjct: 2 FAQFIETPDFVED--IGDLFICPEVVEKHATEYETGFYREFGYTLVHGYLHLNGYDHIKD 59 Query: 146 KDACVMEGLERSILEDLGIN 165 +A VM G++ +LE+ G+ Sbjct: 60 DEAEVMFGIQSKVLEEYGLP 79 >gi|325286234|ref|YP_004262024.1| metalloprotease ybeY [Cellulophaga lytica DSM 7489] gi|324321688|gb|ADY29153.1| metalloprotease ybeY [Cellulophaga lytica DSM 7489] Length = 139 Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E + + ++ +I+ + +++ +F D + +N +Y D T+++ Sbjct: 7 ETDFSLIDNTKYIDWINRIIASEEHL---TGDINYIFCDDSYLLNINQQYLNHDTYTDII 63 Query: 85 SFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 +F DI ++ E ++ A +F+ ++ ++ HG LHL GY Sbjct: 64 TFDYTDGKVISS------DIYISVERVKENAVDFKVDFDVEMLRVMAHGLLHLAGYKDKS 117 Query: 145 DKDACVMEGLERS 157 ++A +M E Sbjct: 118 TEEAALMRSKEEE 130 >gi|289704493|ref|ZP_06500929.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] gi|289705007|ref|ZP_06501420.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] gi|289558266|gb|EFD51544.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] gi|289558785|gb|EFD52040.1| metalloprotein, YbeY/ UPF0054family [Micrococcus luteus SK58] Length = 157 Score = 94.0 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 14/161 (8%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + ++I E+ + E L + V+ + E ++ D+ R+ L Sbjct: 1 MAVEILNESGIEVPEDALLRMARHVYTR----------LHVHERAETAVTVVDAARMAEL 50 Query: 71 NFEYRGIDKPTNVLSFPTAF---ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 + E+ + PT+V+S P S + + +LGD+VL E+ +A G ++ L+ Sbjct: 51 HEEWMDLPGPTDVMSLPMDELTPGSPEAPAEGVLGDVVLCPEVAAEQAARGGHSRDDELL 110 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILED-LGINDP 167 L+ HG LHLLGYDH++D D M GL+ ++ + LG P Sbjct: 111 LLLTHGMLHLLGYDHLEDADREEMFGLQDRLVSEVLGRPAP 151 >gi|78189140|ref|YP_379478.1| hypothetical protein Cag_1173 [Chlorobium chlorochromatii CaD3] gi|123579746|sp|Q3ARE0|RRMF_CHLCH RecName: Full=Probable rRNA maturation factor gi|78171339|gb|ABB28435.1| Protein of unknown function UPF0054 [Chlorobium chlorochromatii CaD3] Length = 156 Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 37 AKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGC 96 + + + I ++ V+ + + +N +Y D PT+ ++F + + Sbjct: 16 KRLLQAIRMVVQGEGYEIATITGVYCGNRMSQRINRDYLNHDYPTDTITFCYSEGKAIE- 74 Query: 97 SSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 G+ ++ ++I A FE L+ + IH LHL G + ++ M+ E Sbjct: 75 -----GEFYISLDVIRCNARHFNVTFEEELLRVTIHSALHLTGMNDYLPEERVAMQAKED 129 Query: 157 SILEDL 162 L+ L Sbjct: 130 YYLQLL 135 >gi|313676469|ref|YP_004054465.1| hypothetical protein Ftrac_2379 [Marivirga tractuosa DSM 4126] gi|312943167|gb|ADR22357.1| protein of unknown function UPF0054 [Marivirga tractuosa DSM 4126] Length = 142 Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 K + L I EL+ +F + +N ++ D T++++F +++ Sbjct: 18 LQKHKAWLKQLAKIYDHEIDELNYIFCSDKFLHKINVDFLDHDTYTDIITFDLKESTTGN 77 Query: 96 CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 + DI ++ + + A L F+ L ++ HG LHL+G++ + D M E Sbjct: 78 NAIES--DIFISIDRVTENAENLNLNFKEELARVMAHGLLHLIGFNDKSEADRQEMREAE 135 Query: 156 RSILEDL 162 +E L Sbjct: 136 NKAIELL 142 >gi|84688108|ref|ZP_01015961.1| hypothetical protein 1099457000212_RB2654_05425 [Maritimibacter alkaliphilus HTCC2654] gi|84663878|gb|EAQ10389.1| hypothetical protein RB2654_05425 [Rhodobacterales bacterium HTCC2654] Length = 127 Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 15/121 (12%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + + + E+ W + L L E A ++ L G E++L+ D RI L Sbjct: 1 MIVDVVYEDDRWV-ALGLEALAETACAATLAKLGIAG-------AEIALLACDDDRIAAL 52 Query: 71 NFEYRGIDKPTNVLSFPTAF-------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFE 123 N E+R PTNVLS+P+ + LGDI +AY+ EA GK Sbjct: 53 NTEFRDKPTPTNVLSWPSEERGADQPGGDPYPPEDMELGDIAIAYDTCAGEAAEAGKPMV 112 Query: 124 N 124 + Sbjct: 113 D 113 >gi|212550624|ref|YP_002308941.1| hypothetical protein CFPG_267 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229554235|sp|B6YQQ8|RRMF_AZOPC RecName: Full=Probable rRNA maturation factor gi|212548862|dbj|BAG83530.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 139 Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 59/136 (43%), Gaps = 9/136 (6%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 ++ + + + ++ + +++ +F + I +N Y D T++++F Sbjct: 11 KFPSINRKITTRWIKQILID---YNKRAGDITCIFCSNDEILRINNFYLNHDCYTDIITF 67 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + ++ GD+ +A ++I+ + + L +IIHG LHL G++ K Sbjct: 68 DYS------KGDIISGDLFIALDMIKYNSMKYNVNYFEELYRVIIHGILHLCGFNDKLIK 121 Query: 147 DACVMEGLERSILEDL 162 D VM E LE + Sbjct: 122 DIKVMREGENRALEKI 137 >gi|110598628|ref|ZP_01386894.1| Protein of unknown function UPF0054 [Chlorobium ferrooxidans DSM 13031] gi|110339740|gb|EAT58249.1| Protein of unknown function UPF0054 [Chlorobium ferrooxidans DSM 13031] Length = 149 Score = 93.6 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R + E + + AV ++ F +++V + + + I+ +N E+ G D PT+ ++F Sbjct: 22 REVPEQLLSDAVLLVLETEEFTVDSVVGV---YCGNKMIQRINREFLGHDYPTDTVTFRY 78 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G+ ++ +++ A +F L+ + IH LHL+GYD ++ Sbjct: 79 SKDREVD------GEFYISLDVVRENAARFDADFLQELLRVTIHSALHLIGYDDQSPEER 132 Query: 149 CVMEGLERSILEDL 162 M+ E L L Sbjct: 133 AGMQEKEAFYLARL 146 >gi|189501732|ref|YP_001957449.1| hypothetical protein Aasi_0282 [Candidatus Amoebophilus asiaticus 5a2] gi|238692302|sp|B3ER68|RRMF_AMOA5 RecName: Full=Probable rRNA maturation factor gi|189497173|gb|ACE05720.1| hypothetical protein Aasi_0282 [Candidatus Amoebophilus asiaticus 5a2] Length = 147 Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 14/148 (9%) Query: 8 LPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRI 67 +P+ ++ VE+ I + + + N+I + +V L+ +F + + Sbjct: 1 MPKANIYYFVED------IQFKLPNPKIITDWIHNVIQQENC---QLVNLNFIFCSDNFL 51 Query: 68 ETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 N +Y D T+V++F A + G+I ++ E + A +F L Sbjct: 52 HKKNLKYLQHDTLTDVITFSYAED-----QKNIEGEIYISIERVSDNATTYQIDFWQELY 106 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLE 155 ++IHG LHLLGY+ + M E Sbjct: 107 TVMIHGVLHLLGYNDETLLEQEEMRKKE 134 >gi|218961523|ref|YP_001741298.1| hypothetical protein CLOAM1232 [Candidatus Cloacamonas acidaminovorans] gi|167730180|emb|CAO81092.1| conserved hypothetical protein [Candidatus Cloacamonas acidaminovorans] Length = 154 Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 14/148 (9%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVL 84 E+ T+ + ++ LI E+ ++ + DS ++ N YRG+++ T++L Sbjct: 5 ELIGETIIPESEQEKIAELICSQE-DPEHSYQICVKTVDSETMKHYNKRYRGLNETTDIL 63 Query: 85 SF------PTAFASSDGCS-----SLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 SF A D + + DI++ + + + + E ++IHG Sbjct: 64 SFITADLPACAIEERDEEDGFSAKPVRICDIIIDIKRLFQQ--KGIRTLEEEYRAVLIHG 121 Query: 134 FLHLLGYDHVDDKDACVMEGLERSILED 161 LHL+GYDH+ DA M E L+ Sbjct: 122 LLHLVGYDHIRSADAEKMNKKEEYYLKQ 149 >gi|42522997|ref|NP_968377.1| metal-dependent hydrolase, putative [Bdellovibrio bacteriovorus HD100] gi|59799115|sp|Q6MMY3|RRMF_BDEBA RecName: Full=Probable rRNA maturation factor gi|39575202|emb|CAE79370.1| metal-dependent hydrolase, putative [Bdellovibrio bacteriovorus HD100] Length = 150 Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 11/153 (7%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +++ I E+ ++T ++V + + K + EL+LVF D + + Sbjct: 1 MEVLIVNESKHAAPRKFIQTWMQLVVTELKRKKVLKAEQARR---ELTLVFLDKKPAQKI 57 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+RG + T+VLSF D LG++VL E+++ ++ G ++ L +++ Sbjct: 58 NMEFRGKNYATDVLSF-------DSMDPGSLGELVLCPEVLKRQSKEHGLTYQQELGYML 110 Query: 131 IHGFLHLLGYDHVD-DKDACVMEGLERSILEDL 162 +HG LHLLGYDH + +A M G++ + E L Sbjct: 111 LHGVLHLLGYDHETSEAEALEMFGIQDAAFEVL 143 >gi|218885681|ref|YP_002435002.1| hypothetical protein DvMF_0577 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756635|gb|ACL07534.1| protein of unknown function UPF0054 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 171 Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 56/149 (37%), Gaps = 24/149 (16%) Query: 38 KAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF------- 90 +AV + + + VEL I LN + G PTN+LSFP Sbjct: 22 RAVFAAMQEATGLAGCTVELD--LVGDEEIARLNAAHLGCTGPTNILSFPAHDGGPHDGA 79 Query: 91 -------------ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 D + LG +VL+ + E + G+E H + L+ HG HL Sbjct: 80 HASSPDRSHGGPHDGPDEDAPCHLGWLVLSLDTWRRECQLYGQEPVEHALRLLAHGLGHL 139 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIND 166 GYDH + D LE D G+ D Sbjct: 140 AGYDHGPEMDEFTDAALEAG--RDAGLAD 166 >gi|196001605|ref|XP_002110670.1| hypothetical protein TRIADDRAFT_54920 [Trichoplax adhaerens] gi|190586621|gb|EDV26674.1| hypothetical protein TRIADDRAFT_54920 [Trichoplax adhaerens] Length = 174 Score = 93.6 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 17/149 (11%) Query: 30 TLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID--KPTNVLSFP 87 L +F + V L+ + +++++ ++ +N + D T++LSFP Sbjct: 22 RLDVKLFDQHVQQLM---RLFELQQFDVAVLLIGQAKMAEINTRF-NPDAKGATDILSFP 77 Query: 88 TAFASSDGCS-------SLMLGDIVLAYEIIEIEANVLGKEFENH-LVHLIIHGFLHLLG 139 S LGDI + ++I K L + HG HLLG Sbjct: 78 FHENLRASLSSKSILPWECDLGDIFICPKMI---CQRFDKSILQEQLPVYVTHGICHLLG 134 Query: 140 YDHVDDKDACVMEGLERSILEDLGINDPY 168 Y H D+K M ER ILE + Y Sbjct: 135 YIHDDEKSQIEMHIKERDILEKFNRANGY 163 >gi|120602327|ref|YP_966727.1| hypothetical protein Dvul_1281 [Desulfovibrio vulgaris DP4] gi|120562556|gb|ABM28300.1| protein of unknown function UPF0054 [Desulfovibrio vulgaris DP4] Length = 162 Score = 93.2 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 22/137 (16%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A W I LR L VFA +G+ E+ L D I +N E G Sbjct: 12 AAWRLPIALRDLSG-VFAAMQCATGLEGF-------EVELTIADDALIAMINEEQLGCIG 63 Query: 80 PTNVLSFPTAFASSDGCSS--------------LMLGDIVLAYEIIEIEANVLGKEFENH 125 PTN+LSFP D + +LG +VL+ + + EA + G+ + H Sbjct: 64 PTNILSFPAYGDPPDYPADGMECGTGQDAHTSLPLLGSLVLSVDTLRREAFLYGQPVQEH 123 Query: 126 LVHLIIHGFLHLLGYDH 142 + L+ HG H+ GYDH Sbjct: 124 CLRLLAHGLGHIAGYDH 140 >gi|119629697|gb|EAX09292.1| chromosome 21 open reading frame 57, isoform CRA_d [Homo sapiens] Length = 124 Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 37/111 (33%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 +L ++ D+ I+ +N YR + PT+VLSFP Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHE---------------------- 70 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 HG HLLG+ H + + M E+++L++LG Sbjct: 71 ---------------VTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 106 >gi|46580292|ref|YP_011100.1| hypothetical protein DVU1883 [Desulfovibrio vulgaris str. Hildenborough] gi|62901440|sp|Q72AV7|RRMF_DESVH RecName: Full=Probable rRNA maturation factor gi|46449709|gb|AAS96359.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233726|gb|ADP86580.1| protein of unknown function UPF0054 [Desulfovibrio vulgaris RCH1] Length = 162 Score = 92.8 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 22/137 (16%) Query: 20 ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDK 79 A W I LR + VFA +G+ E+ L D I +N E G Sbjct: 12 AAWRLPIALRDISG-VFAAMQCATGLEGF-------EVELTIADDALIAMINEEQLGCIG 63 Query: 80 PTNVLSFPTAFASSDGCSS--------------LMLGDIVLAYEIIEIEANVLGKEFENH 125 PTN+LSFP A D + +LG +VL+ + + EA + G+ + H Sbjct: 64 PTNILSFPAYGAPPDYPADGMECGTGQDAHTSLPLLGSLVLSVDTLRREAFLYGQPVQEH 123 Query: 126 LVHLIIHGFLHLLGYDH 142 + L+ HG H+ GYDH Sbjct: 124 CLRLLAHGLGHIAGYDH 140 >gi|189499926|ref|YP_001959396.1| hypothetical protein Cphamn1_0971 [Chlorobium phaeobacteroides BS1] gi|238692296|sp|B3EPY3|RRMF_CHLPB RecName: Full=Probable rRNA maturation factor gi|189495367|gb|ACE03915.1| protein of unknown function UPF0054 [Chlorobium phaeobacteroides BS1] Length = 138 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 9/134 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R + E + + ++I FV + +V + F I+ +N E+ G D T+ ++F Sbjct: 11 RVIPEEKLERVIRHVIEAEGFVPDVVVAV---FCGDRLIQRINREHLGHDYATDTITFRY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 G+ ++ ++I+ + FEN L + IH LHL GYD D+ Sbjct: 68 NSGREIE------GEFYVSLDVIDKNSRRFKTGFENELFRVAIHSALHLAGYDDSGDEAR 121 Query: 149 CVMEGLERSILEDL 162 M+ E L L Sbjct: 122 AGMKKREDRYLSQL 135 >gi|91215358|ref|ZP_01252329.1| hypothetical protein P700755_09598 [Psychroflexus torquis ATCC 700755] gi|91186310|gb|EAS72682.1| hypothetical protein P700755_09598 [Psychroflexus torquis ATCC 700755] Length = 143 Score = 92.8 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L+S ++ + EL+ VF + +N Y D T++++F S Sbjct: 25 LLSVIKSEQKTLGELTYVFCSDEYLLDINQSYLQHDTLTDIITFDYTEGDSISTE----- 79 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 I ++ + ++ A G +FE L ++ HG LH GY + ++ +M E Sbjct: 80 -IYISIDRVKENAEEFGVDFEKELKRVMAHGVLHCCGYKDLTQEEKDLMRAKEN 132 >gi|95929411|ref|ZP_01312154.1| protein of unknown function UPF0054 [Desulfuromonas acetoxidans DSM 684] gi|95134527|gb|EAT16183.1| protein of unknown function UPF0054 [Desulfuromonas acetoxidans DSM 684] Length = 157 Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 14/145 (9%) Query: 15 IAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEY 74 I +EN +I + T AK + N + + ELS+V D +I+ +N +Y Sbjct: 2 IYIENQQQNHDIPITTFKTA--AKTILNALE-----CPDDTELSVVIVDDDQIQEINRDY 54 Query: 75 RGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 D PTNV+SF G +LGD+V++ + +A G F + + L+IHG Sbjct: 55 LQRDNPTNVISFAQQEGEGAGICPELLGDVVISADTAARDAAEAGVPFFSEMSFLLIHGI 114 Query: 135 LHLLGYDHV-------DDKDACVME 152 LHLLGYDH + +A E Sbjct: 115 LHLLGYDHERGTEEQATEMEAKERE 139 >gi|94264469|ref|ZP_01288257.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93455100|gb|EAT05324.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 440 Score = 92.4 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAY 108 + ELS++ D R+ LN YRG D+PTNVL+FP A + G +LGDIV+A Sbjct: 75 QAAAELSILLVDEQRMGQLNAHYRGQDRPTNVLAFPQADHDREAAGGAGPRLLGDIVIAP 134 Query: 109 EIIEIEANVLGKEFENHLVH 128 + EA LG + L Sbjct: 135 AVAAREARELGISRQRRLDW 154 >gi|255536700|ref|YP_003097071.1| predicted metal-dependent hydrolase [Flavobacteriaceae bacterium 3519-10] gi|255342896|gb|ACU09009.1| predicted metal-dependent hydrolase [Flavobacteriaceae bacterium 3519-10] Length = 142 Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 7/136 (5%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVK-ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + E+ + + + + + L+ VF + +N EY D T++++F Sbjct: 13 FEDIDEIAISPEIKPWLENLLISEGKKPGVLNYVFCSDEYLLKINREYLDHDYLTDIITF 72 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 + GDI ++ I A + F+ L+ + HG LHL GY + Sbjct: 73 DYV------KGKTVSGDIFVSLHRISENALLHDNSFDTELLRVTAHGLLHLCGYKDKTEV 126 Query: 147 DACVMEGLERSILEDL 162 + M E + Sbjct: 127 EISEMRSKEDFYINQF 142 >gi|296113058|ref|YP_003626996.1| uncharacterized protein family (UPF0054) family protein [Moraxella catarrhalis RH4] gi|295920752|gb|ADG61103.1| uncharacterized protein family (UPF0054) family protein [Moraxella catarrhalis RH4] gi|326560434|gb|EGE10816.1| hypothetical protein E9G_05772 [Moraxella catarrhalis 7169] gi|326561638|gb|EGE11975.1| hypothetical protein E9K_08504 [Moraxella catarrhalis 103P14B1] gi|326562601|gb|EGE12912.1| hypothetical protein E9M_04866 [Moraxella catarrhalis 46P47B1] gi|326563589|gb|EGE13843.1| hypothetical protein E9O_08074 [Moraxella catarrhalis 12P80B1] gi|326565831|gb|EGE15993.1| hypothetical protein E9Q_09660 [Moraxella catarrhalis BC1] gi|326570486|gb|EGE20526.1| hypothetical protein E9U_03828 [Moraxella catarrhalis BC8] gi|326571169|gb|EGE21193.1| hypothetical protein E9S_05602 [Moraxella catarrhalis BC7] gi|326573460|gb|EGE23428.1| hypothetical protein E9Y_09446 [Moraxella catarrhalis 101P30B1] gi|326575642|gb|EGE25565.1| hypothetical protein E9W_01670 [Moraxella catarrhalis CO72] gi|326577106|gb|EGE27000.1| hypothetical protein EA1_04120 [Moraxella catarrhalis O35E] Length = 180 Score = 92.0 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 79/155 (50%), Gaps = 11/155 (7%) Query: 25 EIHLRTLCEVVFAKAVSNLISKGYFVKENIV--------ELSLVFTDSHRIETLNFEYRG 76 +I L + E + L FV +S+ + + +N RG Sbjct: 23 DIDLNKIVETTLSIMTQKLHHGIDFVYFPDAIQIWHMPKSVSIYVVNHAQGRAVNLAARG 82 Query: 77 IDKPTNVLSFPTAFASSDG--CSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGF 134 D TNVLS+P+ + + LG++VL +E++ EA+ K FE+HL HLIIHG Sbjct: 83 KDYATNVLSYPSELPTEMTTLLGEIELGELVLCHEVVLNEADEQNKSFESHLTHLIIHGL 142 Query: 135 LHLLGYDH-VDDKDACVMEGLERSILEDLGINDPY 168 LHLLG+DH + D DA MEG E IL LGI++PY Sbjct: 143 LHLLGFDHEISDADADQMEGFEIEILAQLGIDNPY 177 >gi|94271344|ref|ZP_01291941.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93450472|gb|EAT01646.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 440 Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD---GCSSLMLGDIVLAY 108 + ELS++ D R+ LN YRG D+PTNVL+FP A + +LGDIV+A Sbjct: 75 QAAAELSILLVDEQRMGQLNAHYRGQDRPTNVLAFPQADHDREAAGEAGPRLLGDIVIAP 134 Query: 109 EIIEIEANVLGKEFENHLVH 128 + EA LG + L Sbjct: 135 AVAAREARELGISRQRRLDW 154 >gi|212703304|ref|ZP_03311432.1| hypothetical protein DESPIG_01347 [Desulfovibrio piger ATCC 29098] gi|212673264|gb|EEB33747.1| hypothetical protein DESPIG_01347 [Desulfovibrio piger ATCC 29098] Length = 143 Score = 91.3 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 8/127 (6%) Query: 22 WGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPT 81 + L + A+ + L S + + D I N Y G PT Sbjct: 10 YPAGAWLLPVPPRQIARILDALTSAAREAGCPLGPVETHLVDDACIARANQRYMGCTGPT 69 Query: 82 NVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYD 141 NVLSFP + +ML L+ + + E + G++ HL+ L+ H HL GYD Sbjct: 70 NVLSFP----GDESLPGVML----LSLDTLNRECLLYGQDPAEHLLRLLAHSVGHLAGYD 121 Query: 142 HVDDKDA 148 H ++ DA Sbjct: 122 HGEEMDA 128 >gi|189347078|ref|YP_001943607.1| hypothetical protein Clim_1583 [Chlorobium limicola DSM 245] gi|238692156|sp|B3EDK3|RRMF_CHLL2 RecName: Full=Probable rRNA maturation factor gi|189341225|gb|ACD90628.1| protein of unknown function UPF0054 [Chlorobium limicola DSM 245] Length = 144 Score = 91.3 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 9/138 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + L E + + V +++ F E+IV + + I +N E+ D T+ ++F Sbjct: 11 KELHEELLERTVIDVLDSEGFGVESIVAV---YCGKKMIRKINREFLQHDYATDTITFRY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G+ ++ ++IE A +F+ L+ + IH LHL+GYD Sbjct: 68 SDNREID------GEFYISLDVIEENARRFEVDFKLELLRVTIHSALHLIGYDDQTVDGR 121 Query: 149 CVMEGLERSILEDLGIND 166 M+ E L + Sbjct: 122 LQMQQKEEFYLNRYSEAN 139 >gi|21674205|ref|NP_662270.1| hypothetical protein CT1383 [Chlorobium tepidum TLS] gi|62901450|sp|Q8KCN1|RRMF_CHLTE RecName: Full=Probable rRNA maturation factor gi|21647369|gb|AAM72612.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 137 Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 17/152 (11%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + LQI DE L + +V + + S + ++ + I + Sbjct: 1 MPLQIFNTTKRTIDETLLAEVIRLVIGEEGGAVGS-----------IEAIYCGNKMIRRI 49 Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N ++ G D T+ ++F + G+ ++ ++IE A G FE+ L+ + Sbjct: 50 NRDFLGHDYVTDTITFGYNE------GGEVDGEFYISLDVIESNARRFGVSFEDELLRVT 103 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 IH LHL+GYD + M E L L Sbjct: 104 IHSALHLMGYDDETSELRAAMSLREDHYLYRL 135 >gi|188585826|ref|YP_001917371.1| protein of unknown function UPF0054 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350513|gb|ACB84783.1| protein of unknown function UPF0054 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 141 Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 8/138 (5%) Query: 36 FAKAVSNLISK-GYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS- 93 K V + K + + E+ L+ D+ I+ LN +YR K T+VLSFP Sbjct: 2 LTKIVETTLQKVKKEIANSPGEVGLMIVDAETIKELNRDYRNQYKSTDVLSFPQYQEDDL 61 Query: 94 ---DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACV 150 D L+LGDIV++ + +A+ G E L L +HG LHLLGYDH ++ Sbjct: 62 VERDSDDYLLLGDIVISESAVLDQADKYGHSIERELAFLFLHGLLHLLGYDHEKEEAQSE 121 Query: 151 ---MEGLERSILEDLGIN 165 M L+ IL LGI Sbjct: 122 EESMFVLQEEILSSLGIT 139 >gi|194336788|ref|YP_002018582.1| protein of unknown function UPF0054 [Pelodictyon phaeoclathratiforme BU-1] gi|194309265|gb|ACF43965.1| protein of unknown function UPF0054 [Pelodictyon phaeoclathratiforme BU-1] Length = 139 Score = 90.9 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 9/135 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 + + E + KAV ++ F E+IV + + + I+ +N E+ G D PT+ ++F Sbjct: 10 KEIPEQLLEKAVLLVLENEGFTVESIVGV---YCGNKMIQRINREFLGHDYPTDTITFRY 66 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G+ ++ ++++ A +F+ L+ + +H LHL+GY ++ Sbjct: 67 NKGAEID------GEFYISLDVVKENAARFSVDFQQELLRVTLHSALHLIGYGDQSAEER 120 Query: 149 CVMEGLERSILEDLG 163 ++E E L G Sbjct: 121 RLIEEKEAFYLTRSG 135 >gi|330813322|ref|YP_004357561.1| metal-dependent hydrolase [Candidatus Pelagibacter sp. IMCC9063] gi|327486417|gb|AEA80822.1| metal-dependent hydrolase [Candidatus Pelagibacter sp. IMCC9063] Length = 98 Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 10/100 (10%) Query: 67 IETLNFEYRGIDKPTNVLSFPTAFASS------DGCSSLMLGDIVLAYEIIEIEANVLGK 120 ++ LN ++R I K T+VLSFP + +++ LGD+ +Y+ I+ + Sbjct: 1 MKKLNKDFRRILKDTDVLSFPHHEKNFFLKRKLPTVNNIYLGDLAFSYDYIKKQ----KT 56 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILE 160 F ++ + IHG LHL+GY+H + K+ M LER +L Sbjct: 57 NFVEYVNKIFIHGCLHLVGYEHDNLKNYKEMHSLERKLLA 96 >gi|153812738|ref|ZP_01965406.1| hypothetical protein RUMOBE_03145 [Ruminococcus obeum ATCC 29174] gi|149831098|gb|EDM86187.1| hypothetical protein RUMOBE_03145 [Ruminococcus obeum ATCC 29174] Length = 133 Score = 90.1 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 22/140 (15%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 + +QI E D I L V + + V ++LV TD+ I+ + Sbjct: 1 MTIQINYEAERKLD-IDYEKLASEVAEQILET------ENCPYDVCVNLVITDNEEIKRV 53 Query: 71 NFEYRGIDKPTNVLSFPTAFASSD---------------GCSSLMLGDIVLAYEIIEIEA 115 N E+R I PT+VLSFP + L+LGD++++ + + +A Sbjct: 54 NTEFRSIGAPTDVLSFPMIPFKTPADYSVIEGDDSYFDLDTDELILGDVMISVDKVYAQA 113 Query: 116 NVLGKEFENHLVHLIIHGFL 135 G E L H L Sbjct: 114 EEYGHSTEREFSFLFAHSML 133 >gi|322436562|ref|YP_004218774.1| protein of unknown function UPF0054 [Acidobacterium sp. MP5ACTX9] gi|321164289|gb|ADW69994.1| protein of unknown function UPF0054 [Acidobacterium sp. MP5ACTX9] Length = 155 Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 40 VSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSL 99 ++ +++ E+ ++ T I+ LN +RG +K T+VLSFP Sbjct: 21 LARFLNRAREAVGLDGEVEVLLTSDVEIKRLNKAFRGKNKATDVLSFPAPEEFEG----- 75 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + GD+ ++ + +A G + + L++HG LHL G DH D M E + Sbjct: 76 VAGDLAVSLDTAAKQAAEHGHGLRDEVRILLLHGLLHLAGEDHETDS--GEMAAREAELR 133 Query: 160 EDLGIN 165 ++LG+ Sbjct: 134 KELGLP 139 >gi|298711736|emb|CBJ32782.1| conserved unknown protein [Ectocarpus siliculosus] Length = 296 Score = 89.7 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 43/149 (28%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG--------CSSLMLGDIVLA 107 ++ V T + LN +YRG+ T++LSFP S + + LGD+ ++ Sbjct: 139 DVGAVLTTDKEVFRLNRQYRGMSTSTDILSFPNHDMSGSPGVLPKVRFPAEMDLGDMFIS 198 Query: 108 YEIIEIE-----------------------------------ANVLGKEFENHLVHLIIH 132 ++ + A + + L++H Sbjct: 199 LAYVDRQIKRDREEQAAAVAAAAAGGGGQEEEWWDSERGVSGAMSRVFDVQERASMLLVH 258 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILED 161 G +HLLGYDH + D M +E +L Sbjct: 259 GLIHLLGYDHETESDYKAMVAVEEEVLRA 287 >gi|257063748|ref|YP_003143420.1| conserved hypothetical protein TIGR00043 [Slackia heliotrinireducens DSM 20476] gi|256791401|gb|ACV22071.1| conserved hypothetical protein TIGR00043 [Slackia heliotrinireducens DSM 20476] Length = 163 Score = 89.0 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 14/115 (12%) Query: 24 DEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNV 83 D +H L V + ++ + EN E+S+ F D I+ LN EYRGIDKPT+V Sbjct: 6 DVLHGEDLVSQVDVERLAEYVLTQEGCPEN-TEVSITFVDDEEIQRLNLEYRGIDKPTDV 64 Query: 84 LSFPTAFASSD-------------GCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 LSF + +LGDI++A ++ + Sbjct: 65 LSFECDGYDDEFDDGDAYEDAGVPDDEPFLLGDIIIATDVANAQTAQFHTTPSEE 119 >gi|153005571|ref|YP_001379896.1| hypothetical protein Anae109_2711 [Anaeromyxobacter sp. Fw109-5] gi|166228436|sp|A7HDW6|RRMF_ANADF RecName: Full=Probable rRNA maturation factor gi|152029144|gb|ABS26912.1| protein of unknown function UPF0054 [Anaeromyxobacter sp. Fw109-5] Length = 192 Score = 88.6 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 11/119 (9%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA----FASSDGCSSLMLGDIV 105 + E+S++ RI LN E+RG D T+VLSFP + S +LGD+V Sbjct: 30 LGRADAEISILLVGDRRIRALNREWRGKDAATDVLSFPLSEPPG-------SGPLLGDVV 82 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 ++ + A + L + HG LHLLGYDH DA M E + G+ Sbjct: 83 ISLDTAARRARQERRAVGAELDRYLAHGLLHLLGYDHERPADARRMARKEAELARAEGL 141 >gi|50842421|ref|YP_055648.1| putative metalloprotease [Propionibacterium acnes KPA171202] gi|282854119|ref|ZP_06263456.1| metalloprotein, YbeY/ UPF0054family [Propionibacterium acnes J139] gi|59799026|sp|Q6A976|RRMF_PROAC RecName: Full=Probable rRNA maturation factor gi|50840023|gb|AAT82690.1| conserved protein [Propionibacterium acnes KPA171202] gi|282583572|gb|EFB88952.1| metalloprotein, YbeY/ UPF0054family [Propionibacterium acnes J139] gi|314923094|gb|EFS86925.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL001PA1] gi|314966863|gb|EFT10962.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL082PA2] gi|314981205|gb|EFT25299.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA3] gi|315091776|gb|EFT63752.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA4] gi|315093216|gb|EFT65192.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL060PA1] gi|315103280|gb|EFT75256.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL050PA2] gi|315105485|gb|EFT77461.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL030PA1] Length = 155 Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 14/117 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ +E L L + ELS++ D +E + Sbjct: 2 IDITNESGSPSNEEGLVGLATFALDR----------LRIHPSSELSIILVDEETMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++ G+ PT+VLSFP + S +LGDIVL + +A G+ + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTPDGE 108 >gi|225010333|ref|ZP_03700805.1| protein of unknown function UPF0054 [Flavobacteria bacterium MS024-3C] gi|225005812|gb|EEG43762.1| protein of unknown function UPF0054 [Flavobacteria bacterium MS024-3C] Length = 148 Score = 88.2 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 43 LISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 L+ ++ LS +F + + LN Y D T++++F +++ G Sbjct: 31 LLKVAESEGYSVAALSYIFCNDQYLLELNQSYLSHDTFTDIITFDYVE------GTIISG 84 Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 DI ++ + +E A + FE + ++ HG LHL+GY +D VM E Sbjct: 85 DIFISVDRLEENAAIFKVSFEEERLRVMAHGLLHLMGYKDKSAEDQLVMSNKENE 139 >gi|320106115|ref|YP_004181705.1| hypothetical protein AciPR4_0878 [Terriglobus saanensis SP1PR4] gi|319924636|gb|ADV81711.1| protein of unknown function UPF0054 [Terriglobus saanensis SP1PR4] Length = 156 Score = 87.8 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 27/120 (22%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 +++++ D R++ LN +R +K T+VLSFP S + + GD+ ++ + E +A Sbjct: 35 DVTVLLADDARVKDLNRTFRKKNKATDVLSFPAGEGSDE-----IAGDLAISLDTAEKQA 89 Query: 116 NVLGKEFENHLVHLII----------HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 G + + L + H + D M E + L + Sbjct: 90 ESFGHTLYDEVRVLTLHGLLHLAGLDH------------EIDKGEMAAKELELRTKLELP 137 >gi|194334312|ref|YP_002016172.1| hypothetical protein Paes_1505 [Prosthecochloris aestuarii DSM 271] gi|238693340|sp|B4S8Y8|RRMF_PROA2 RecName: Full=Probable rRNA maturation factor gi|194312130|gb|ACF46525.1| protein of unknown function UPF0054 [Prosthecochloris aestuarii DSM 271] Length = 141 Score = 87.4 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R + E + + ++ V E +L+ V+ + +N E+ D PT+ ++F Sbjct: 11 RDIPEQKLMQVIEGVLGAEGLVIE---DLTAVYCGNRLSRRINCEFLQHDYPTDTITFRY 67 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + + G++ ++ +I+ A F + L + IH LHL G++ ++ Sbjct: 68 NDGEA------VEGELYISLDIVAENAQRFNVSFTDELFRVTIHSALHLAGFEDTSVEER 121 Query: 149 CVMEGLERSILE 160 M+ E L Sbjct: 122 ASMKDKEDHYLN 133 >gi|327327688|gb|EGE69464.1| putative metalloprotease [Propionibacterium acnes HL103PA1] Length = 155 Score = 87.4 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 14/117 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ +E L L + ELS++ D +E + Sbjct: 2 IDITNESGSPSNEEGLVGLATFALDR----------LRIHPSSELSIILVDEETMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++ G+ PT+VLSFP + S +LGDIVL + +A G+ + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTSDGE 108 >gi|313792245|gb|EFS40346.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA1] gi|315078119|gb|EFT50170.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL053PA2] gi|327453040|gb|EGE99694.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL092PA1] Length = 155 Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 14/117 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ +E L L + ELS++ D +E + Sbjct: 2 IDITNESGSPSNEEGLVGLATFALD----------WLRIHPSSELSIILVDEETMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++ G+ PT+VLSFP + S +LGDIVL + +A G+ + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRVPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTPDGE 108 >gi|289425171|ref|ZP_06426948.1| metalloprotein, YbeY family [Propionibacterium acnes SK187] gi|289427200|ref|ZP_06428916.1| metalloprotein, YbeY family [Propionibacterium acnes J165] gi|295130497|ref|YP_003581160.1| metalloprotein, YbeY family [Propionibacterium acnes SK137] gi|289154149|gb|EFD02837.1| metalloprotein, YbeY family [Propionibacterium acnes SK187] gi|289159669|gb|EFD07857.1| metalloprotein, YbeY family [Propionibacterium acnes J165] gi|291376558|gb|ADE00413.1| metalloprotein, YbeY family [Propionibacterium acnes SK137] gi|313764557|gb|EFS35921.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL013PA1] gi|313772405|gb|EFS38371.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL074PA1] gi|313801806|gb|EFS43040.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL110PA2] gi|313807415|gb|EFS45902.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL087PA2] gi|313809923|gb|EFS47644.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL083PA1] gi|313816098|gb|EFS53812.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL059PA1] gi|313818461|gb|EFS56175.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL046PA2] gi|313820224|gb|EFS57938.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL036PA1] gi|313822967|gb|EFS60681.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL036PA2] gi|313825105|gb|EFS62819.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL063PA1] gi|313827673|gb|EFS65387.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL063PA2] gi|313830254|gb|EFS67968.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL007PA1] gi|313834055|gb|EFS71769.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL056PA1] gi|313838632|gb|EFS76346.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL086PA1] gi|314915553|gb|EFS79384.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA4] gi|314918493|gb|EFS82324.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL050PA1] gi|314919980|gb|EFS83811.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL050PA3] gi|314925452|gb|EFS89283.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL036PA3] gi|314931993|gb|EFS95824.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL067PA1] gi|314955862|gb|EFT00262.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL027PA1] gi|314958343|gb|EFT02446.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL002PA1] gi|314960102|gb|EFT04204.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL002PA2] gi|314962904|gb|EFT07004.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL082PA1] gi|314968019|gb|EFT12118.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL037PA1] gi|314973260|gb|EFT17356.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL053PA1] gi|314975935|gb|EFT20030.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL045PA1] gi|314978308|gb|EFT22402.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL072PA2] gi|314984047|gb|EFT28139.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA1] gi|314987810|gb|EFT31901.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA2] gi|314990031|gb|EFT34122.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL005PA3] gi|315080748|gb|EFT52724.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL078PA1] gi|315084418|gb|EFT56394.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL027PA2] gi|315085758|gb|EFT57734.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL002PA3] gi|315088824|gb|EFT60800.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL072PA1] gi|315096172|gb|EFT68148.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL038PA1] gi|315098434|gb|EFT70410.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL059PA2] gi|315101209|gb|EFT73185.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL046PA1] gi|315108431|gb|EFT80407.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL030PA2] gi|327326089|gb|EGE67879.1| putative metalloprotease [Propionibacterium acnes HL096PA2] gi|327332040|gb|EGE73777.1| putative metalloprotease [Propionibacterium acnes HL096PA3] gi|327443243|gb|EGE89897.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL013PA2] gi|327446029|gb|EGE92683.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL043PA2] gi|327447993|gb|EGE94647.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL043PA1] gi|327450883|gb|EGE97537.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL087PA3] gi|327453768|gb|EGF00423.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL083PA2] gi|328753570|gb|EGF67186.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL020PA1] gi|328754303|gb|EGF67919.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL087PA1] gi|328754445|gb|EGF68061.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL025PA2] gi|328760410|gb|EGF73978.1| putative metalloprotease [Propionibacterium acnes HL099PA1] gi|332675333|gb|AEE72149.1| putative metal-dependent hydrolase [Propionibacterium acnes 266] Length = 155 Score = 87.0 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 14/117 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ +E L L + ELS++ D +E + Sbjct: 2 IDITNESGSPSNEEGLVGLATFALD----------WLRIHPSSELSIILVDEETMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++ G+ PT+VLSFP + S +LGDIVL + +A G+ + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTPDGE 108 >gi|305665799|ref|YP_003862086.1| hypothetical protein FB2170_05900 [Maribacter sp. HTCC2170] gi|88710565|gb|EAR02797.1| hypothetical protein FB2170_05900 [Maribacter sp. HTCC2170] Length = 140 Score = 87.0 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 6/101 (5%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++ +F + + +N ++ D T++++F +++ GD+ ++ E IE A Sbjct: 36 INFIFCEDDYLLKVNQQHLKHDYFTDIITFDYTD------GNIVSGDVFISTERIEENAG 89 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 + G F L+ ++ HG LHLLGY+ + + M E Sbjct: 90 LFGVNFNTELLRVMSHGILHLLGYNDKSEDEVIKMRAKEEE 130 >gi|261749198|ref|YP_003256883.1| hypothetical protein BPLAN_108 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497290|gb|ACX83740.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 137 Score = 86.6 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 7/103 (6%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 ++ +F + H + LN +Y D T+V++F + + GD+ ++ + + + Sbjct: 37 INYIFCNDHYLLNLNKKYLQKDYYTDVIAFAYS-----STPPNISGDVFISIDRVLENSQ 91 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + F+ L ++IH LH LGY D + +M+ E L Sbjct: 92 QWNQLFQVELKRVMIHAILHFLGY--EDRINEKLMKKKEEFYL 132 >gi|145559544|sp|P75209|RRMF_MYCPN RecName: Full=Probable rRNA maturation factor Length = 154 Score = 86.3 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 11/141 (7%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELS------LVFTDSHRIETLNFEYRGIDK 79 I+ L + F K I + ++ ++LS L+ +++ LN ++ Sbjct: 7 INSNYLFKRFFGKNFEAGIELCLQIIKDSLQLSFQPEFALMIVSPWKMKRLNRQFLNRKG 66 Query: 80 PTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLG 139 T+V+S + ++ S +G+I L + I +A G L +IHG LHL Sbjct: 67 VTDVIS--ICYNENEAGFSPAIGEIFLCPKHIFKQAKQFGCTPWFLLTRNLIHGLLHLFE 124 Query: 140 YDHVDD--KDACVMEGLERSI 158 +DH ++ M + I Sbjct: 125 FDHEQSLAFESVTMF-FQDEI 144 >gi|221505230|gb|EEE30884.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 772 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 68/217 (31%), Gaps = 75/217 (34%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + DE L E + A+ S ++ + +S+ F D+ ++ LN R Sbjct: 233 EVTVDRDEELPSPLDEGLLARQASAVLE---LLGLRAFSVSVHFLDAEKMTQLNRAKRNT 289 Query: 78 DKPTNVLSFPTAFA---------------------------------------------S 92 + PT+VL+FP+ Sbjct: 290 NAPTDVLAFPSRSPTVYRRLRSFLTQLSLPRQSETGESGDAATPAKETSEDWEASSTLIP 349 Query: 93 SDGCSSLMLGDIVLA-------YEIIEIEANVLGKEFE--------------------NH 125 + L LG++ + EA +L + Sbjct: 350 LRSPADLSLGEVFFCSSAIQDAIDADRREAEILAESGRPCVHLGSGIKDLLKPRLSVPER 409 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IH LHLLG+DH ++ DA ME +E ++ Sbjct: 410 LPLLFIHAVLHLLGFDHEEEGDAREMEAVEEALFARF 446 >gi|119629695|gb|EAX09290.1| chromosome 21 open reading frame 57, isoform CRA_c [Homo sapiens] Length = 122 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 F D LGDI L E I + +++ + L HG HLLG+ H + + Sbjct: 31 EFPQPDFPDDYNLGDIFLGVEYIFHQCKE-NEDYNDVLTVTATHGLCHLLGFTHGTEAEW 89 Query: 149 CVMEGLERSILEDLG 163 M E+++L++LG Sbjct: 90 QQMFQKEKAVLDELG 104 >gi|84999364|ref|XP_954403.1| hypothetical protein [Theileria annulata] gi|65305401|emb|CAI73726.1| hypothetical protein, conserved [Theileria annulata] Length = 524 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 20/126 (15%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLS-----------FPTAFASSDGCSSLMLGDIV 105 L + D ++ +NFE G +KPT+++S F + LG+I Sbjct: 386 LDIFIEDEKNMKRINFEQFGGNKPTDIISLRDDLLYLKSDFHKNRSPLKPPEHYHLGEIF 445 Query: 106 LAYEIIEIE-------ANVLG--KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 + +IE E A + + + ++ HG LHLLGYDH + M +E Sbjct: 446 ICPGVIESENMIRGGVAARMKGISDINIRMCFIMAHGILHLLGYDHEKAEWFREMAEMED 505 Query: 157 SILEDL 162 ++L++ Sbjct: 506 ALLDEF 511 >gi|260655935|ref|ZP_05861404.1| putative metalloprotease [Jonquetella anthropi E3_33 E1] gi|260629551|gb|EEX47745.1| putative metalloprotease [Jonquetella anthropi E3_33 E1] Length = 171 Score = 85.5 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 33/132 (25%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-----SDGCSSLMLGDIVLA 107 + +E+SL F D + LN +YRG ++PT+VLSFP L LGD+V Sbjct: 46 DELEISLQFLDEEAMAALNGQYRGENRPTDVLSFPLWENDGHLELPPSGGVLPLGDLVFC 105 Query: 108 YEIIEIEANVLGKEFENH------------LVHLIIHGFLHLLGYDHVDDKDACVMEGLE 155 ++E A G ++ + +DH ++ M ++ Sbjct: 106 RPVLEANAAAAGTSVQSELALLLAHGALHLIA------------WDHDTEERRAAMWAVQ 153 Query: 156 R----SILEDLG 163 ILE G Sbjct: 154 ERYRQRILERAG 165 >gi|71654855|ref|XP_816039.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881140|gb|EAN94188.1| hypothetical protein, conserved [Trypanosoma cruzi] gi|322822620|gb|EFZ28616.1| hypothetical protein TCSYLVIO_5140 [Trypanosoma cruzi] Length = 207 Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 38/162 (23%) Query: 39 AVSNLISKGYFVK--ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS----------- 85 AV L +++ VELS+ F +++ LN E RGID+PT+VL+ Sbjct: 21 AVQRLAEAVLWLEHAPPSVELSIHFIRLSQMQLLNHERRGIDRPTDVLTVSGSGSGSPDA 80 Query: 86 -------FP--------------TAFASSDGCSSLM-LGDIVLAYEIIEIEANVLGK--- 120 FP + +A+ L+ LG+I ++ E + + Sbjct: 81 SWVNGVLFPDKSHIVCVSDGLRASEWAAPSRRDLLLDLGEIYVSVEEMWMRCLRYPHKNL 140 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 F ++L + H LH LGYDH + M E+ +L L Sbjct: 141 PFHDYLQVALTHALLHALGYDHDTPERWKKMSRREKFMLHQL 182 >gi|221483947|gb|EEE22251.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 776 Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 68/217 (31%), Gaps = 75/217 (34%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + DE L E + A+ S ++ + +S+ F D+ ++ LN R Sbjct: 233 EVTVDRDEELPSPLDEGLLARQASAVLE---LLGLRAFSVSVHFLDAEKMTQLNRAKRNT 289 Query: 78 DKPTNVLSFPTAFA---------------------------------------------S 92 + PT+VL+FP+ Sbjct: 290 NAPTDVLAFPSRSPTVYRRLRSFLTQLSLPRQSETGESGDAATPAKETSEDWEASSTLVP 349 Query: 93 SDGCSSLMLGDIVLA-------YEIIEIEANVLGKEFE--------------------NH 125 + L LG++ + EA +L + Sbjct: 350 LRSPADLSLGEVFFCSSAIQDAIDADRREAEILAESGRPCVHLGSGIKDLLKPRLSVPER 409 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IH LHLLG+DH ++ DA ME +E ++ Sbjct: 410 LPLLFIHAVLHLLGFDHEEEGDAREMEAVEAAVFARF 446 >gi|213027667|ref|ZP_03342114.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161077|ref|ZP_03346787.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213583243|ref|ZP_03365069.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 85 Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 13/88 (14%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN A DE + + V + + E+++ D Sbjct: 1 MSQVILDLQLACENHAGLPDEAQFQRWLDGVIPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFAS 92 LN YRG DKPTNVLSFP Sbjct: 49 AESHDLNLTYRGKDKPTNVLSFPFEAPP 76 >gi|229815232|ref|ZP_04445568.1| hypothetical protein COLINT_02278 [Collinsella intestinalis DSM 13280] gi|229809242|gb|EEP45008.1| hypothetical protein COLINT_02278 [Collinsella intestinalis DSM 13280] Length = 172 Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 12/168 (7%) Query: 10 RLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +D+ + + N D + L E +++++ E VE+SL + D + Sbjct: 1 MMDMSVLISNDANLDTL----LSEDEVCAIAAHVLAAEGV--ERDVEISLSYVDEDEMHD 54 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSS---LMLGDIVLAYEIIEIEANVLGKEFENHL 126 LN ++R ID+ T+VLSF A + L LGDI+LA E+I +A G + + Sbjct: 55 LNRQWRDIDRTTDVLSFECDSAFDEDIPLDEVLELGDIILAPEVIARQAPGFGNDPTDEC 114 Query: 127 VHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGI---NDPYEVD 171 +++HG LHLLGYDH++D +A ME E ++L +L + +DP +V+ Sbjct: 115 RLMLVHGLLHLLGYDHIEDDEAEEMEAREDALLRELAVQRGDDPSKVE 162 >gi|300774540|ref|ZP_07084403.1| possible metal dependent hydrolase [Chryseobacterium gleum ATCC 35910] gi|300506355|gb|EFK37490.1| possible metal dependent hydrolase [Chryseobacterium gleum ATCC 35910] Length = 139 Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 +L + K + +LI + + E++ +F D + +N +Y D T++++F Sbjct: 8 NLPESVSTDYKKWLEDLILSE---GKKLGEINYIFCDDEYLLKINQDYLQHDYYTDIITF 64 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + I ++ + I A+ L +++E L ++ HG LHL GY Sbjct: 65 DYVKGKTISAE------IFVSLQRISDNASTLSRDYEEELRRVLAHGILHLAGYKDKT 116 >gi|297568434|ref|YP_003689778.1| pyridoxal phosphate biosynthetic protein PdxJ [Desulfurivibrio alkaliphilus AHT2] gi|296924349|gb|ADH85159.1| pyridoxal phosphate biosynthetic protein PdxJ [Desulfurivibrio alkaliphilus AHT2] Length = 398 Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS--S 93 A+ + + ELSL+ D +++ N +R ++PTNVL+F A Sbjct: 17 LARLKKQAAILLHLTGQPRSELSLLLVDDRQMQEFNHLFRQRNRPTNVLAFAQREAPEIP 76 Query: 94 DGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 G MLGD+V++ + EA G + L Sbjct: 77 GGLGDEMLGDVVISLDTARREARAAGVSPGHRLAW 111 >gi|307110839|gb|EFN59074.1| hypothetical protein CHLNCDRAFT_13914 [Chlorella variabilis] Length = 109 Score = 84.7 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%) Query: 50 VKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLG 102 + +ELSLV D + LN E+RG+D PT+VLSF A + +LG Sbjct: 6 LAAAPLELSLVLCDDAHMRGLNAEWRGVDAPTDVLSFELEDDDDEDAEGGAPELPINVLG 65 Query: 103 DIVLAYEIIEIEANVLGKEFENH 125 D+V++ + +A G+ + Sbjct: 66 DVVISLDTAARQAAERGQSLLDE 88 >gi|301633286|gb|ADK86840.1| translation metalloprotein YbeY [Mycoplasma pneumoniae FH] Length = 143 Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E +L+ +++ LN ++ T+V+S + ++ S +G+I L + I +A Sbjct: 32 EFALMIVSPWKMKRLNRQFLNRKGVTDVIS--ICYNENEAGFSPAIGEIFLCPKHIFKQA 89 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDD--KDACVMEGLERSI 158 G L +IHG LHL +DH ++ M + I Sbjct: 90 KQFGCTPWFLLTRNLIHGLLHLFEFDHEQSLAFESVTMF-FQDEI 133 >gi|237836653|ref|XP_002367624.1| phosphopantethiene--protein transferase domain containing protein [Toxoplasma gondii ME49] gi|211965288|gb|EEB00484.1| phosphopantethiene--protein transferase domain containing protein [Toxoplasma gondii ME49] Length = 772 Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 68/217 (31%), Gaps = 75/217 (34%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E + DE L E + A+ S ++ + +S+ F D+ ++ LN R Sbjct: 233 EVTVDRDEELPSPLDEGLLARQASAVLE---LLGLRAFSVSVHFLDAEKMTQLNRAKRNT 289 Query: 78 DKPTNVLSFPTAFA---------------------------------------------S 92 + PT+VL+FP+ Sbjct: 290 NAPTDVLAFPSRSPTVYRRLRSFLTQLSLPRQSERGESGDVATPAKETSEDWEASSTLIP 349 Query: 93 SDGCSSLMLGDIVLA-------YEIIEIEANVLGKEFE--------------------NH 125 + L LG++ + EA +L + Sbjct: 350 LRSPADLSLGEVFFCSSAIQDAIDADRREAEILAESGRPCVHLGSGIKDLLKPRLSVPER 409 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 L L IH LHLLG+DH ++ DA ME +E ++ Sbjct: 410 LPLLFIHAVLHLLGFDHEEEGDAREMEAVEAALFARF 446 >gi|256370607|ref|YP_003108432.1| hypothetical protein SMDSEM_028 [Candidatus Sulcia muelleri SMDSEM] gi|256009399|gb|ACU52759.1| conserved hypothetical protein [Candidatus Sulcia muelleri SMDSEM] Length = 134 Score = 84.3 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 6/102 (5%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 + +F + + +N ++ + T+VL+F + ++++ G+I ++ I+ + Sbjct: 37 NYIFCEDKFLIKINKKFLKKNSYTDVLTFKYSE------NNIISGEIFISINRIKFNSLK 90 Query: 118 LGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 F + L +IIH LHL+GY+ + + +M E L Sbjct: 91 FKNSFYDELKRVIIHAGLHLIGYNDIKKYEKNLMSKKEDFYL 132 >gi|313837274|gb|EFS74988.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL037PA2] gi|314928051|gb|EFS91882.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL044PA1] gi|314972045|gb|EFT16143.1| conserved hypothetical protein TIGR00043 [Propionibacterium acnes HL037PA3] gi|328907175|gb|EGG26941.1| metalloprotein, YbeY family [Propionibacterium sp. P08] Length = 155 Score = 83.6 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 14/117 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + I E+ DE L L + ELS++ D +E + Sbjct: 2 IDITNESGSPADEEGLVGLATFALD----------WLRIHPSSELSIILIDEQTMEAYHE 51 Query: 73 EYRGIDKPTNVLSFPTAFA----SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 ++ G+ PT+VLSFP + S +LGDIVL + +A G+ + Sbjct: 52 KFMGLPGPTDVLSFPMDEMRAPVDREDPPSGLLGDIVLCPTVTARQAAENGRTPDGE 108 >gi|119629699|gb|EAX09294.1| chromosome 21 open reading frame 57, isoform CRA_f [Homo sapiens] Length = 144 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 31/118 (26%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 L E I + +++ + L M E+++L++LG Sbjct: 93 LGVEYIFHQCKE-NEDYNDVLT-----------------------MFQKEKAVLDELG 126 >gi|308809559|ref|XP_003082089.1| unnamed protein product [Ostreococcus tauri] gi|116060556|emb|CAL55892.1| unnamed protein product [Ostreococcus tauri] Length = 470 Score = 82.8 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 4 KKVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTD 63 +++L L +Q+ E+A L + + KA + + + +ELS+ Sbjct: 38 NELDLNELRVQVE-EDARAVMTKLLTSRGDSAGGKAARGALPRSV----SHMELSVALCS 92 Query: 64 SHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 I +LN YR D T+VLSFP +LGD+V++ + +A Sbjct: 93 DEYIRSLNAGYRQKDSATDVLSFPAES----FGPMAVLGDVVVSVDTAATQARE 142 >gi|239907522|ref|YP_002954263.1| hypothetical protein DMR_28860 [Desulfovibrio magneticus RS-1] gi|239797388|dbj|BAH76377.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 141 Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 9/84 (10%) Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N E+ G+ PTN+LSFP D LG++ L+ + + EA + G+ H+ L+ Sbjct: 52 NGEFLGLPGPTNILSFPAE----DPDRPDYLGELALSLDAVRREAFLYGQPPGLHMARLL 107 Query: 131 IHGFLHLLGYDHVDDKDACVMEGL 154 HGFLHL G DH +ME L Sbjct: 108 AHGFLHLAGLDHGP-----LMESL 126 >gi|298530259|ref|ZP_07017661.1| protein of unknown function UPF0054 [Desulfonatronospira thiodismutans ASO3-1] gi|298509633|gb|EFI33537.1| protein of unknown function UPF0054 [Desulfonatronospira thiodismutans ASO3-1] Length = 143 Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%) Query: 29 RTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT 88 R + + + NL + L+LV TD R++ LN + PTNVL+F Sbjct: 19 RREVRDIIRRILENLDCRE-------SSLNLVITDDSRMQHLNSAFLFCPGPTNVLAF-- 69 Query: 89 AFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKD 147 S LG++ ++ + + E+ + + H V L+ HG HL G++H + + Sbjct: 70 --EEESRHESGFLGEVFISAQAVIRESILYSQPIFEHFVRLLAHGIEHLAGFEHGPEME 126 >gi|262341290|ref|YP_003284145.1| hypothetical protein BLBBGE_533 [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272627|gb|ACY40535.1| hypothetical protein BLBBGE_533 [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 132 Score = 82.4 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 + E F + + L+ N ++ VF + + + +N +Y + T+VLSF Sbjct: 10 DFQIENESFFIQEICLLLKNEGMYIGN---INYVFCNDNFLLDMNEKYLQKNLYTDVLSF 66 Query: 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVD 144 + + + GDI ++ + + + + + F L ++IH LH LGYD + Sbjct: 67 NYS------INQWICGDIFISVDRVLENSKLWNQSFLVELKRVMIHAVLHFLGYDDQN 118 >gi|189219763|ref|YP_001940404.1| metal-dependent hydrolase [Methylacidiphilum infernorum V4] gi|189186621|gb|ACD83806.1| Predicted metal-dependent hydrolase [Methylacidiphilum infernorum V4] Length = 117 Score = 82.0 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 14/91 (15%) Query: 71 NFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 N +R PT+V+SF G+I++ + E EA ++ Sbjct: 29 NLFFRD-PHPTDVISFDY-------------GEILICPSVAEKEARQRSIAVLKEVLLYG 74 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILED 161 IHG LHL G D +++ ME ++ SILE Sbjct: 75 IHGMLHLCGMDDDKEEERKRMEQVQESILEK 105 >gi|328955428|ref|YP_004372761.1| protein of unknown function UPF0054 [Coriobacterium glomerans PW2] gi|328455752|gb|AEB06946.1| protein of unknown function UPF0054 [Coriobacterium glomerans PW2] Length = 187 Score = 81.3 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 10/113 (8%) Query: 23 GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTN 82 DE + E + + ++ + E VELS+ F + + LN +RGID+PT+ Sbjct: 9 SDEGLEAPIGEDEIMRIAAFVLEREGI--EIPVELSVSFVGASEMRDLNRSWRGIDEPTD 66 Query: 83 VLSFPTAFAS--------SDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLV 127 VLSF L LGD++LA EII +A + Sbjct: 67 VLSFECDRPDSKDSLAGRPGCEQPLELGDVILAPEIIAAQATGFKNTAADECR 119 >gi|13508308|ref|NP_110258.1| metalloenzyme interacting with hemolysin [Mycoplasma pneumoniae M129] gi|1673944|gb|AAB95921.1| predicted metalloenzyme interacting with hemolysin [Mycoplasma pneumoniae M129] Length = 108 Score = 81.3 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 5/101 (4%) Query: 60 VFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLG 119 + +++ LN ++ T+V+S + ++ S +G+I L + I +A G Sbjct: 1 MIVSPWKMKRLNRQFLNRKGVTDVIS--ICYNENEAGFSPAIGEIFLCPKHIFKQAKQFG 58 Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDD--KDACVMEGLERSI 158 L +IHG LHL +DH ++ M + I Sbjct: 59 CTPWFLLTRNLIHGLLHLFEFDHEQSLAFESVTMF-FQDEI 98 >gi|108885108|ref|NP_073061.2| hypothetical protein MG_388 [Mycoplasma genitalium G37] gi|255660098|ref|ZP_05405507.1| hypothetical protein MgenG_00575 [Mycoplasma genitalium G37] gi|145559543|sp|P47628|RRMF_MYCGE RecName: Full=Probable rRNA maturation factor gi|84626130|gb|AAC71615.2| expressed protein of unknown function [Mycoplasma genitalium G37] gi|166078687|gb|ABY79305.1| expressed protein of unknown function [synthetic Mycoplasma genitalium JCVI-1.0] Length = 154 Score = 80.9 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E +L+ +++ LN ++ T+V+S + ++ SL +G+I L + I +A Sbjct: 43 EFALLIVSCSKMKKLNKQFLKRRGCTDVIS--LCYNETETGFSLAIGEIFLCPKYIFKKA 100 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK--DACVME---GLERSIL 159 +G L +IHG LHL ++H + + ++ M + IL Sbjct: 101 KEIGCNNWFLLTRCLIHGILHLFEFNHEESEAFESVTMFFQDAIHEEIL 149 >gi|332256683|ref|XP_003277445.1| PREDICTED: LOW QUALITY PROTEIN: rRNA maturation factor homolog [Nomascus leucogenys] Length = 125 Score = 80.9 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 36/111 (32%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIE 112 ++ ++ D+ I+ +N YR + PT+VLSFP + Sbjct: 33 QKFDVGIICVDNENIQHINRIYRDRNVPTDVLSFPFHEXKKKKVT--------------- 77 Query: 113 IEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 HG HLLG+ H + + E+++L++LG Sbjct: 78 -----------------ATHGLCHLLGFTHGSEAEWQQ----EKAVLDELG 107 >gi|297626086|ref|YP_003687849.1| hypothetical protein PFREUD_08850 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921851|emb|CBL56411.1| Hypothetical protein PFREUD_08850 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 152 Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 14/120 (11%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + ++ E++ D L L K +LS++ D + + Sbjct: 2 IDLSNESSEEVDTQALIRLARFALDK----------LRIHPQADLSILLVDVDTMTAYHK 51 Query: 73 EYRGIDKPTNVLSFPTAF----ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 ++ +D PT+V+SFP A + +LGDIV+ +A G+ + + + Sbjct: 52 QFMNLDGPTDVMSFPMDELREPADGEAPPRGLLGDIVICPAFTSAQAPGNGRTNQEEIEY 111 >gi|269215613|ref|ZP_06159467.1| cupin domain protein [Slackia exigua ATCC 700122] gi|269131100|gb|EEZ62175.1| cupin domain protein [Slackia exigua ATCC 700122] Length = 185 Score = 80.5 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 13/108 (12%) Query: 52 ENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS-------------DGCSS 98 E S+ F I LN E+RGID+PT+VLSF + Sbjct: 55 PERTEASIAFVSDDEIRRLNAEFRGIDRPTDVLSFECDGMDDAFDEGDVFEGSGMPDEET 114 Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDK 146 +LGD+++A ++ + G + L L++HG LHL G+DHV Sbjct: 115 FLLGDVIIATDVARAQTERFGTTPQEELCVLLVHGLLHLCGWDHVHSD 162 >gi|302342384|ref|YP_003806913.1| hypothetical protein Deba_0949 [Desulfarculus baarsii DSM 2075] gi|301638997|gb|ADK84319.1| protein of unknown function UPF0054 [Desulfarculus baarsii DSM 2075] Length = 140 Score = 80.1 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%) Query: 58 SLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV 117 SL+ D I +N +Y PTNVL+F G + +LGD+V++ + + EA Sbjct: 21 SLLICDDVEIAQINGQYLDRRGPTNVLAFAMQEGDGAGVNPQILGDVVVSIDTAQREAAE 80 Query: 118 LGKEFENHLVH 128 G + + H V Sbjct: 81 NGLDPDEHFVR 91 >gi|325971266|ref|YP_004247457.1| metalloprotease ybeY [Spirochaeta sp. Buddy] gi|324026504|gb|ADY13263.1| metalloprotease ybeY [Spirochaeta sp. Buddy] Length = 182 Score = 79.7 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 22/163 (13%) Query: 13 LQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNF 72 + ++ E + E+ + + + L + + E S+ F ++ LN Sbjct: 22 IDVSYEIESYVQEVDQQRV--------IDRLEEVLVLLGQGSCEFSVSFVSDAAMQELNK 73 Query: 73 EYRGIDKPTNVLSFPTAFASSD--------------GCSSLMLGDIVLAYEIIEIEANVL 118 YR D+PT++LSF D +LGD+V++ + ++ A Sbjct: 74 TYRDKDEPTDILSFVQEDDVEDFSWPEVVFEETESLPQEIRVLGDMVISLDTLKRNALSF 133 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 E + L L+IHG LHLLG DH + M + +L+ Sbjct: 134 SVEPDEELHRLLIHGLLHLLGEDHHTNDADEPMLVKQEQLLQQ 176 >gi|284931430|gb|ADC31368.1| putative metalloprotease ybeY [Mycoplasma gallisepticum str. F] Length = 164 Score = 76.6 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 36 FAKAVSNLISKGYFVKENI-VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 K ++ S + VK ++ ELS F + LN R + +V+S + Sbjct: 21 ILKIINQCFSSHFKVKNDLLYELS--FVSEKQSLQLNSSLRNKEYVADVIS--VCLWENA 76 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + +LG+I + + I +A F L+ +IIHG LHLL +DH Sbjct: 77 EIITPLLGEIFICSKKIAKDAIKYDVNFWYLLIRMIIHGLLHLLEFDHEQSDAYE 131 >gi|94987342|ref|YP_595275.1| metal-dependent hydrolase [Lawsonia intracellularis PHE/MN1-00] gi|145558844|sp|Q1MPX3|RRMF_LAWIP RecName: Full=Probable rRNA maturation factor gi|94731591|emb|CAJ54954.1| predicted metal-dependent hydrolase [Lawsonia intracellularis PHE/MN1-00] Length = 133 Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 12/118 (10%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 C + F + ++S F K +E + I N Y TNVLSFP Sbjct: 16 FCRLEFVAILEKMLS---FAKLQTIE--VYLVSDTTIAFFNLHYMNCLGITNVLSFPMDD 70 Query: 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDA 148 + G I+L+ + + E+ + + ++ + L+ HG H+ GY H + D Sbjct: 71 ED-------LAGSIILSVDAVCRESLLYRQPILDYCLSLLSHGIAHIAGYTHGVEMDK 121 >gi|281357772|ref|ZP_06244258.1| protein of unknown function UPF0054 [Victivallis vadensis ATCC BAA-548] gi|281315719|gb|EFA99746.1| protein of unknown function UPF0054 [Victivallis vadensis ATCC BAA-548] Length = 165 Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 2/129 (1%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID 78 N+ W + R A+ + +L + F + N E+ G + Sbjct: 5 NSSWETRRYPRP-KRSELARLARRAAELAGLPADFDWDLDIRFVGDRTMAQANAEFVGHE 63 Query: 79 KPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANV-LGKEFENHLVHLIIHGFLHL 137 T+V++F ++++ + E + +V I+HG LH Sbjct: 64 GTTDVITFSYFDDPGSLFPGEAAVELLICLDAARREGEKRADSSYSREVVLYIVHGLLHS 123 Query: 138 LGYDHVDDK 146 G D + Sbjct: 124 AGEDDLSPA 132 >gi|54607074|ref|NP_001006114.1| rRNA maturation factor homolog isoform 2 [Homo sapiens] gi|55824657|gb|AAH22828.2| Chromosome 21 open reading frame 57 [Homo sapiens] gi|110645888|gb|AAI19771.1| Chromosome 21 open reading frame 57 [Homo sapiens] gi|114108258|gb|AAI22866.1| Chromosome 21 open reading frame 57 [Homo sapiens] gi|119629694|gb|EAX09289.1| chromosome 21 open reading frame 57, isoform CRA_b [Homo sapiens] gi|124297721|gb|AAI31554.1| Chromosome 21 open reading frame 57 [Homo sapiens] gi|221040460|dbj|BAH11937.1| unnamed protein product [Homo sapiens] Length = 121 Score = 76.2 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANV 117 L E I + Sbjct: 93 LGVEYIFHQCKE 104 >gi|332872342|ref|XP_003319178.1| PREDICTED: rRNA maturation factor homolog isoform 3 [Pan troglodytes] gi|332872344|ref|XP_003319179.1| PREDICTED: rRNA maturation factor homolog isoform 4 [Pan troglodytes] Length = 121 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPT-------AFASSDGCSSLMLGDIV 105 +L ++ D+ I+ +N YR + PT+VLSFP F D LGDI Sbjct: 33 QKFDLGIICVDNKNIQHINRVYRDRNVPTDVLSFPFHEHLKAGEFPQPDFPDDYNLGDIF 92 Query: 106 LAYEIIEIEANV 117 L E I + Sbjct: 93 LGVEYIFHQCKE 104 >gi|406937|gb|AAD12531.1| unknown [Mycoplasma genitalium] Length = 113 Score = 75.9 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 5/109 (4%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 E +L+ +++ LN ++ T+V+S + ++ SL +G+I L + I +A Sbjct: 8 EFALLIVSCSKMKKLNKQFLKRRGCTDVIS--LCYNETETGFSLAIGEIFLCPKYIFKKA 65 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDK--DACVMEGLERSILEDL 162 +G L +IHG LHL ++H + + ++ M + +I E++ Sbjct: 66 KEIGCNNWFLLTRCLIHGILHLFEFNHEESEAFESVTMF-FQDAIHEEI 113 >gi|294660422|ref|NP_853176.2| putative metalloprotease YbeY [Mycoplasma gallisepticum str. R(low)] gi|298286889|sp|Q7NB85|RRMF_MYCGA RecName: Full=Probable rRNA maturation factor gi|284812081|gb|AAP56744.2| putative metalloprotease ybeY [Mycoplasma gallisepticum str. R(low)] gi|284930658|gb|ADC30597.1| putative metalloprotease ybeY [Mycoplasma gallisepticum str. R(high)] Length = 164 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 36 FAKAVSNLISKGYFVKENI-VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSD 94 K ++ S + VK N+ ELS F + LN R + +++S + Sbjct: 21 ILKIINQCFSSHFKVKNNLFYELS--FVSEKQSLQLNSSLRNKEYVADIIS--VCLWENA 76 Query: 95 GCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDAC 149 + +LG+I + + I +A F L+ +IIHG LHLL +DH Sbjct: 77 EIITPLLGEIFICSKKIAKDAIKYDVNFWYLLIRMIIHGLLHLLEFDHEQSDAYE 131 >gi|257460682|ref|ZP_05625783.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257442013|gb|EEV17155.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 209 Score = 75.5 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 92 SSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVM 151 + +LG +V+ +++E++A LG ++ L HG LH+LGYDH D M Sbjct: 126 DGGNFAPALLGSVVINLDLVELKAAQLGHGRDDETALLFTHGLLHVLGYDHESDD--GQM 183 Query: 152 EGLERSILEDLGIN 165 E I+E + Sbjct: 184 RAKECEIIEKFRLP 197 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Query: 31 LCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 LCE + + + + ++ + VEL +F + LN + RGIDK T+VLSFP Sbjct: 3 LCEQPYPEILDAIAAE---LGGESVEL--IFVRGEEMRQLNAQTRGIDKATDVLSFPLDP 57 Query: 91 ASSDGCSSLM 100 A+ G + Sbjct: 58 AAFAGFGEDL 67 >gi|207109371|ref|ZP_03243533.1| putative metalloprotease [Helicobacter pylori HPKX_438_CA4C1] Length = 99 Score = 75.1 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEAN 116 + LV I +N + RG D T+VLSFP + LG +V+ + + A Sbjct: 30 IELVLVSGETIREINRDLRGCDYATDVLSFPL-----EAIPHTPLGSVVINAPLAQTNAL 84 Query: 117 VLGKEFENHLVHLIIH 132 LG E + L IH Sbjct: 85 KLGHRLEEEIA-LFIH 99 >gi|320170652|gb|EFW47551.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 204 Score = 73.5 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 36/163 (22%) Query: 35 VFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGID-----------KPTNV 83 + + + ++ V L + F R++ L + + + +PT++ Sbjct: 17 AMVRQLCGELQAALGLQPRRVALGVHFVGETRMKALVAQAQSHELASAQPPPRSARPTDI 76 Query: 84 LSF--PTAFASSD-----------------------GCSSLMLGDIVLAYEIIEIEANVL 118 L+F P A+ G +G++ L +IE + Sbjct: 77 LAFGNPMDVAADGLHKHPASSLEEMKKCNLAWKSAYGDPVRDIGELFLCPAVIERDCLKD 136 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILED 161 FE L L+ HG HLLG+DH + + M LE+ +L+ Sbjct: 137 QVTFEGRLPVLLAHGLCHLLGHDHDTMRTSAQMFQLEQQLLQA 179 >gi|154336667|ref|XP_001564569.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061604|emb|CAM38635.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 212 Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 51/178 (28%) Query: 36 FAKAVSNLISKGYFVKENIVE--LSLVFTDSHRIETLNFEYRGIDKPTNVLSF------- 86 + V +LI+ ++ + L+L F + +N +Y+ D+PT+VL+F Sbjct: 15 LRREVRHLINLLLTLEHAPYDTRLNLEFVSLAYMRQINCKYKESDRPTDVLTFTSVGKAD 74 Query: 87 ----------PTAFASSDG-----------------------------CSSLMLGDIVLA 107 P D + LGDI ++ Sbjct: 75 RFVNHLLFSDPLEGGDDDEGTHAALATSRECGVAVAAGPTVLKKSAIRAELVDLGDIFVS 134 Query: 108 YEIIEIEANVLG---KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + + + +L ++H LH LGYDH + + M E+ + L Sbjct: 135 LDYMRLRCRRYPSTTLPLAPYLHAALVHATLHALGYDHKNPELLQHMARREQQLGRQL 192 >gi|157876147|ref|XP_001686434.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129508|emb|CAJ08051.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 213 Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 49/155 (31%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD------------- 103 L+L F + LN++Y+G+D+PT+VL+F A + + L+ GD Sbjct: 39 LNLEFVSLAHMRQLNYKYKGLDRPTDVLTFAPAGEADSFVNDLLFGDFLERGDGDKGTGA 98 Query: 104 ---------------------------------IVLAYEIIEIEANVLG---KEFENHLV 127 I ++ + + + +L Sbjct: 99 TLTASPTCAAAVGAGPNALTQSIIRGELVDLGNIFVSLDYMRLRCRRYPSTTLPLAPYLH 158 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++H LH LGYDH M E+ + L Sbjct: 159 AALVHATLHALGYDHTSRALLQQMARREQQLGRQL 193 >gi|303326746|ref|ZP_07357188.1| cupin domain protein [Desulfovibrio sp. 3_1_syn3] gi|302862734|gb|EFL85666.1| cupin domain protein [Desulfovibrio sp. 3_1_syn3] Length = 141 Score = 73.2 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 10/117 (8%) Query: 26 IHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 + L + + + ++ + VEL L+ D + N + PTNVLS Sbjct: 14 LPLNRRELALALRIMLRALADAERGAPDSVELHLL--DDAAVSAANRRFMNCIGPTNVLS 71 Query: 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDH 142 FP G ++L+ + + E + G+E H + L+ HG HL G DH Sbjct: 72 FPGGEDLP--------GILLLSLDTLARECLLYGQEPAEHALRLLAHGMGHLAGLDH 120 >gi|220904823|ref|YP_002480135.1| hypothetical protein Ddes_1556 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869122|gb|ACL49457.1| protein of unknown function UPF0054 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 156 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 17/140 (12%) Query: 21 LWGDEIHLRTLCEVVFAKAVSNLI----SKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 + L L A+ ++ + G VEL L+ D + N + G Sbjct: 13 RYPSGCALAPLHWRQMRTALHAMLTVPSAPGEAQAPEGVELYLL--DDASVARANAGHLG 70 Query: 77 IDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH 136 PTN+LSFP S G ++L+ + + E + G++ H V L+ HG H Sbjct: 71 CTGPTNILSFPGGSGSP--------GALLLSLDTLRRECLLYGQDPAEHAVRLLAHGMGH 122 Query: 137 LLGYDHVDDKDA---CVMEG 153 L G DH DA ME Sbjct: 123 LRGLDHGPVMDALCERHMEA 142 >gi|322502702|emb|CBZ37785.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 213 Score = 72.4 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 49/155 (31%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD------------- 103 LSL F + LN +Y+G D+PT+VL+F A + + L+ GD Sbjct: 39 LSLEFVSLAHMRQLNCKYKGSDRPTDVLTFTPAGEADSFVNDLLFGDFLERGDGDTGTGA 98 Query: 104 ---------------------------------IVLAYEIIEIEANVLG---KEFENHLV 127 I ++ + + + +L Sbjct: 99 TLTTSPTCAGAVGAEPNALTQSIIRAELIDLGSIFVSLDYMRLRCRRFPSTTLPLAPYLH 158 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++H LH LGYDH + M E+ + L Sbjct: 159 AALVHATLHALGYDHKNPALLQQMVRREQQLGRQL 193 >gi|225012536|ref|ZP_03702972.1| protein of unknown function UPF0054 [Flavobacteria bacterium MS024-2A] gi|225003513|gb|EEG41487.1| protein of unknown function UPF0054 [Flavobacteria bacterium MS024-2A] Length = 123 Score = 71.6 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 61 FTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGK 120 F + +N +Y T+++SF + S + + ++ +E A + Sbjct: 20 FVSQEELLEMNQKYLNHTTHTDIISFNYSSKES------LRAEFFISLWAVERSAEEESQ 73 Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLER 156 EN + +I+HG LH LG++ ++ M LE Sbjct: 74 SVENECLRVIVHGILHCLGFNDASLQEKAKMRTLEN 109 >gi|146099524|ref|XP_001468666.1| hypothetical protein [Leishmania infantum] gi|134073034|emb|CAM71753.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 213 Score = 70.9 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 49/155 (31%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGD------------- 103 L+L F + LN +Y+G D+PT+VL+F A + + L+ GD Sbjct: 39 LNLEFVSLAHMRQLNCKYKGSDRPTDVLTFTPAGEADSFVNDLLFGDFLERGDGDTGTGA 98 Query: 104 ---------------------------------IVLAYEIIEIEANVLG---KEFENHLV 127 I ++ + + + +L Sbjct: 99 TLTTSPTCAGAVGAEPNALTQSIIRAELIDLGSIFVSLDYMRLRCRRFPSTTLPLAPYLH 158 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++H LH LGYDH + M E+ + L Sbjct: 159 AALVHATLHALGYDHKNPALLQQMVRREQQLGRQL 193 >gi|320102827|ref|YP_004178418.1| hypothetical protein Isop_1283 [Isosphaera pallida ATCC 43644] gi|319750109|gb|ADV61869.1| protein of unknown function UPF0054 [Isosphaera pallida ATCC 43644] Length = 191 Score = 70.1 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 23/119 (19%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML-GDIVLAYEIIEIEA 115 +++ D + + LN D PT+V++ A A D S + ++ ++ E +A Sbjct: 67 VTIYLVDDRQSQALNRRLLQHDWPTDVITSVIAQAEPDAPRSQPIEAELFISTETAARQA 126 Query: 116 NVLGKEFENHLVHLIIHGFLHLLGY-----------DHVDDKDACVMEGLERSILEDLG 163 + + Y D ++ DA M E +L G Sbjct: 127 AEHHATAWDEVGR-----------YLVHGLLHLLGHDDANEFDAQRMRQEETRMLRAAG 174 >gi|269836920|ref|YP_003319148.1| hypothetical protein Sthe_0889 [Sphaerobacter thermophilus DSM 20745] gi|269786183|gb|ACZ38326.1| protein of unknown function UPF0054 [Sphaerobacter thermophilus DSM 20745] Length = 153 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 3/150 (2%) Query: 18 ENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 E+ E+ + + + +++ + + + I L+ + I Sbjct: 3 EHGGLSVELTISPGAPSLDQGRLRAVLAFAARHEGLSGTVGVWICTDAEIADLHLRFMNI 62 Query: 78 DKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHL 137 PT+VL+FP ++DG LGDI ++++ +A G + + +L +HG LHL Sbjct: 63 PDPTDVLTFPADITNTDG---PYLGDIAVSFDTAADQAADAGHSPQREIAYLALHGLLHL 119 Query: 138 LGYDHVDDKDACVMEGLERSILEDLGINDP 167 GYD + + M + ++ +P Sbjct: 120 AGYDDLTPDERDTMLRRQDELIAAFEREEP 149 >gi|329942556|ref|ZP_08291366.1| hypothetical protein G5Q_0253 [Chlamydophila psittaci Cal10] gi|332287187|ref|YP_004422088.1| hypothetical metal-binding protein [Chlamydophila psittaci 6BC] gi|313847783|emb|CBY16773.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|325506554|gb|ADZ18192.1| hypothetical metal-binding protein [Chlamydophila psittaci 6BC] gi|328815466|gb|EGF85454.1| hypothetical protein G5Q_0253 [Chlamydophila psittaci Cal10] gi|328914434|gb|AEB55267.1| possible metalloenzyme [Chlamydophila psittaci 6BC] Length = 158 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 4/107 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI-- 113 ++ + F D + L+ E T+ ++ P +LG+ ++ + Sbjct: 41 QVYVYFLDDEALAKLHDEVFSDPSLTDTITLPID-PPGSTSRPHILGEAFISPKAAIRFL 99 Query: 114 -EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + + ++H LH+LGYD ++ M G E L Sbjct: 100 QDRAEDSDLLYEEISRYVVHSLLHMLGYDDQTPEERKKMRGKENQAL 146 >gi|62184873|ref|YP_219658.1| hypothetical protein CAB231 [Chlamydophila abortus S26/3] gi|81312950|sp|Q5L6N4|RRMF_CHLAB RecName: Full=Probable rRNA maturation factor gi|62147940|emb|CAH63687.1| conserved hypothetical protein [Chlamydophila abortus S26/3] Length = 158 Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 4/107 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI-- 113 ++ + F D + L+ E T+ ++ P S +LG+ ++ + Sbjct: 41 QVYVYFLDDEALAQLHDEVFADPSLTDTITLPIDSPES-TAHPHILGEAFISPKAAIRFL 99 Query: 114 EANVLGKEF-ENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + + + ++H LH+LGYD ++ M G E L Sbjct: 100 QDRAEDTDLLYEEISRYVVHSLLHMLGYDDQTPEERKKMRGKENQAL 146 >gi|330893139|gb|EGH25800.1| metal-binding heat shock protein [Pseudomonas syringae pv. mori str. 301020] Length = 69 Score = 69.3 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 30/52 (57%), Positives = 40/52 (76%) Query: 120 KEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 K ++H H++IHG LHLLGYDH+DD++A ME LER++LE+LG DPY D Sbjct: 2 KSVDSHWAHMVIHGCLHLLGYDHIDDEEAEEMEALERTLLEELGYPDPYAED 53 >gi|269303385|gb|ACZ33485.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN] Length = 158 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 4/110 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI-- 113 E+ + F + + L+ + T+ ++ P A D +LG+ ++ + Sbjct: 41 EIFIYFLEDKALAELHDKVFADPSLTDTITLPID-APGDPAYPHVLGEAFISPQAALRFL 99 Query: 114 -EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 + ++ + ++H LH+LGYD ++ M E IL L Sbjct: 100 ENTSPNQEDIYEEISRYLVHSILHMLGYDDTSSEEKRKMRVKENQILRML 149 >gi|15605149|ref|NP_219934.1| metalloenzyme [Chlamydia trachomatis D/UW-3/CX] gi|76789155|ref|YP_328241.1| metal-binding protein [Chlamydia trachomatis A/HAR-13] gi|237802849|ref|YP_002888043.1| hypothetical protein JALI_4231 [Chlamydia trachomatis B/Jali20/OT] gi|237804771|ref|YP_002888925.1| hypothetical protein CTB_4231 [Chlamydia trachomatis B/TZ1A828/OT] gi|255311230|ref|ZP_05353800.1| hypothetical protein Ctra62_02190 [Chlamydia trachomatis 6276] gi|255317532|ref|ZP_05358778.1| hypothetical protein Ctra6_02185 [Chlamydia trachomatis 6276s] gi|62901130|sp|O84429|RRMF_CHLTR RecName: Full=Probable rRNA maturation factor gi|123606882|sp|Q3KLS9|RRMF_CHLTA RecName: Full=Probable rRNA maturation factor gi|3328852|gb|AAC68019.1| possible metalloenzyme [Chlamydia trachomatis D/UW-3/CX] gi|76167685|gb|AAX50693.1| hypothetical metal-binding protein [Chlamydia trachomatis A/HAR-13] gi|231273071|emb|CAX09984.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274083|emb|CAX10877.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT] gi|296435945|gb|ADH18119.1| hypothetical protein G9768_02185 [Chlamydia trachomatis G/9768] gi|296436872|gb|ADH19042.1| hypothetical protein G11222_02190 [Chlamydia trachomatis G/11222] gi|296437806|gb|ADH19967.1| hypothetical protein G11074_02190 [Chlamydia trachomatis G/11074] gi|297140306|gb|ADH97064.1| hypothetical protein CTG9301_02195 [Chlamydia trachomatis G/9301] gi|297748552|gb|ADI51098.1| Hypothetical metal-binding protein [Chlamydia trachomatis D-EC] gi|297749432|gb|ADI52110.1| Hypothetical metal-binding protein [Chlamydia trachomatis D-LC] Length = 161 Score = 67.8 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 10/150 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 QI + N I L++ +V + K + ++ + F D + L+ E Sbjct: 10 QIFISNEQQDVSIDLQSAQRLV--------VLFLELQKVSTDQVYVYFLDDTALAQLHDE 61 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE-FENHLVHLIIH 132 PT+ ++ P +LG+ ++ + ++ + + ++H Sbjct: 62 QFSDPSPTDTITLPID-KPGIASFPHVLGEAFVSPKAAMRFLEQYTEDQLYHEISRYVVH 120 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LH+LGYD D+D +M+ E L L Sbjct: 121 SLLHMLGYDDQTDEDKRIMQEQEDVSLSFL 150 >gi|322495135|emb|CBZ30439.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 213 Score = 67.0 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 49/155 (31%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSF------------------------------ 86 L+L F + LN++Y+G D+ T+VL+F Sbjct: 39 LNLEFVSLAHMRQLNYKYKGSDRATDVLTFTPVGKAGSFVNDLLFSDFLERGDGNKDTGA 98 Query: 87 ---------------PTAFASSDGCSSLM-LGDIVLAYEIIEIEANVLG---KEFENHLV 127 P A S + L+ LG+I ++ + + + +L Sbjct: 99 TLTTSPTCAGAVGAEPNALTQSIIRAELLDLGNIFVSLDYMRLRCRRYPSTTLPLAPYLH 158 Query: 128 HLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 ++H LH LGYDH M E+ + L Sbjct: 159 AALVHATLHALGYDHTSPALLQQMVRREQQLGRQL 193 >gi|15618420|ref|NP_224705.1| metalloenzyme [Chlamydophila pneumoniae CWL029] gi|15836040|ref|NP_300564.1| metalloenzyme [Chlamydophila pneumoniae J138] gi|16752534|ref|NP_444796.1| hypothetical protein CP0245 [Chlamydophila pneumoniae AR39] gi|33241861|ref|NP_876802.1| hypothetical protein CpB0530 [Chlamydophila pneumoniae TW-183] gi|62901395|sp|Q9Z843|RRMF_CHLPN RecName: Full=Probable rRNA maturation factor gi|4376797|gb|AAD18649.1| predicted Metalloenzyme [Chlamydophila pneumoniae CWL029] gi|7189172|gb|AAF38109.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] gi|8978879|dbj|BAA98715.1| metalloenzyme [Chlamydophila pneumoniae J138] gi|33236370|gb|AAP98459.1| hypothetical protein CpB0530 [Chlamydophila pneumoniae TW-183] Length = 158 Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 4/107 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI-- 113 E+ + F + + L+ + T+ ++ P A D +LG+ ++ + Sbjct: 41 EIFIYFLEDKALAELHDKVFADPSLTDTITLPID-APGDPAYPHVLGEAFISPQAALRFL 99 Query: 114 -EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + ++ + ++H LH+LGYD ++ M E IL Sbjct: 100 ENTSPNQEDIYEEISRYLVHSILHMLGYDDTSSEEKRKMRVKENQIL 146 >gi|159479148|ref|XP_001697660.1| hypothetical protein CHLREDRAFT_176526 [Chlamydomonas reinhardtii] gi|158274270|gb|EDP00054.1| predicted protein [Chlamydomonas reinhardtii] Length = 296 Score = 66.2 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 3/101 (2%) Query: 17 VENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRG 76 V+ E V + ++G + + LSLV D I LN +RG Sbjct: 70 VDAVAEALEADTAAALRRVLERKGQQKAAEG-WKMPRVACLSLVLCDDAHIRHLNSLHRG 128 Query: 77 IDKPTNVLSFPTAFASSD--GCSSLMLGDIVLAYEIIEIEA 115 D T+VLSF ++GD+ LA + A Sbjct: 129 KDAATDVLSFELGDELDYRVHLPVKLMGDLPLAARRVPYPA 169 >gi|242279255|ref|YP_002991384.1| hypothetical protein Desal_1783 [Desulfovibrio salexigens DSM 2638] gi|242122149|gb|ACS79845.1| protein of unknown function UPF0054 [Desulfovibrio salexigens DSM 2638] Length = 151 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVL 118 L + I +N E+ G PTNVLSFP + D + LG+IVL+ + + E + Sbjct: 42 LKIVNDAAIAEVNEEFLGCVGPTNVLSFPFSET-PDLEKNSFLGEIVLSVDTLARETRLY 100 Query: 119 GKEFENHLVHLIIHGFLHLLGYDHVDD 145 G++ E H V L+ H LHL GYDH + Sbjct: 101 GQQPEEHTVRLLAHALLHLAGYDHGPE 127 >gi|68061851|ref|XP_672927.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56490394|emb|CAI01931.1| hypothetical protein PB300467.00.0 [Plasmodium berghei] Length = 346 Score = 65.8 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 53/163 (32%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML----------- 101 N V+L + F D ++ +N +YR ++PT+++S + D + ++ Sbjct: 13 NNVQLIIKFVDLKEMKNINKKYRNKNEPTDIISILNVVKNDDTNNEILHSDDFFYINNSK 72 Query: 102 -GDIVLAYEIIEIEANVLGKEFE------------------------------------- 123 GDI L E I E + ++E Sbjct: 73 SGDIFLCPEYINRECVISKMKYEKKILKSNSEEVIDEYISTNSNEEENKRGVNKLFRNIF 132 Query: 124 ---NHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLERSILEDL 162 L ++HG +HL+ DHV+ K+ LE + Sbjct: 133 DVNERLPFYVLHGLIHLMHKDHVNSFKEYTEFMDLEEQTIGKY 175 >gi|89898578|ref|YP_515688.1| hypothetical protein CF0771 [Chlamydophila felis Fe/C-56] gi|123482931|sp|Q253J5|RRMF_CHLFF RecName: Full=Probable rRNA maturation factor gi|89331950|dbj|BAE81543.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56] Length = 158 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 4/107 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115 ++ + F D + ++ E T+ ++ P + +LG+ ++ + Sbjct: 41 QVYIYFLDDKALAQIHDEVFSDPSLTDTITLPID-SPGISSHPHVLGEAFISPKAAIRFL 99 Query: 116 NVLGKE---FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 ++ + ++H LH+LGYD ++ M E L Sbjct: 100 KDRSQDSDLLYEEISRYVVHSLLHMLGYDDQTPEERKKMRVKENQAL 146 >gi|29840002|ref|NP_829108.1| hypothetical protein CCA00235 [Chlamydophila caviae GPIC] gi|62901358|sp|Q824B8|RRMF_CHLCV RecName: Full=Probable rRNA maturation factor gi|29834349|gb|AAP04986.1| conserved hypothetical protein [Chlamydophila caviae GPIC] Length = 158 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 4/107 (3%) Query: 56 ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI-- 113 ++ + F D + L+ E T+ ++ P + +LG+ ++ + Sbjct: 41 QVYIYFLDDESLAQLHDEVFSDPSLTDTITLPID-SPGTSSQPHILGEAFISPKAAIRFL 99 Query: 114 -EANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 + + +IH LH+LGYD ++ M E L Sbjct: 100 KDRAEDSDLLYEEISRYVIHSLLHMLGYDDQTPEERKKMRVKENQAL 146 >gi|82705294|ref|XP_726911.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23482512|gb|EAA18476.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 521 Score = 65.1 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 55/164 (33%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLML----------- 101 N V+L + F + ++ +N +YR ++PT+V+S +D ++ +L Sbjct: 186 NNVQLIIKFVNLKEMKNINKKYRNKNEPTDVISI-LNVVKNDNTNNEILDNSDFFYINNS 244 Query: 102 --GDIVLAYEIIEIEANVLGKEFE------------------------------------ 123 GDI L E I E + ++E Sbjct: 245 KSGDIFLCPEYINKECVISKMKYEQKILKTNNEQLIDEYINTNSNEEENKRGVNKLFQNI 304 Query: 124 ----NHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLERSILEDL 162 L ++H +HL+ DHV+ + LE +E Sbjct: 305 FDVNERLPFYVLHALIHLMHKDHVNSFNEYTEFMNLEEQAIEKY 348 >gi|68071683|ref|XP_677755.1| holo-(acyl-carrier protein) synthase [Plasmodium berghei strain ANKA] gi|56497992|emb|CAI05672.1| holo-(acyl-carrier protein) synthase, putative [Plasmodium berghei] Length = 396 Score = 64.7 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 56/180 (31%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F K LI+ F N V+L + F D ++ +N +YR ++PT+++S + D Sbjct: 49 FEKETKKLINILNF---NNVQLIIKFVDLKEMKNINKKYRNKNEPTDIISILNVVKNDDT 105 Query: 96 CSSLML------------GDIVLAYEIIEIEANVLGKEFE-------------------- 123 + ++ GDI L E I E + ++E Sbjct: 106 NNEILHSDDFFYINNSKSGDIFLCPEYINRECVISKMKYEKKILKSNSEEVIDEYISTNS 165 Query: 124 --------------------NHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLERSILEDL 162 L ++HG +HL+ DHV+ K+ LE + Sbjct: 166 NEEENKRGVNKLFRNIFDVNERLPFYVLHGLIHLMHKDHVNSFKEYTEFMDLEEQTIGKY 225 >gi|213416841|ref|ZP_03349985.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 65 Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 13/77 (16%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A EN A DE + + V + + E+++ D Sbjct: 1 MSQVILDLQLACENHAGLPDEAQFQRWLDGVIPQ------------FQEEAEVTIRLVDE 48 Query: 65 HRIETLNFEYRGIDKPT 81 LN YRG DKPT Sbjct: 49 AESHDLNLTYRGKDKPT 65 >gi|76799813|ref|ZP_00781874.1| Hypothetical UPF0054 protein gbs1562/SAG1501 [Streptococcus agalactiae 18RS21] gi|76584831|gb|EAO61528.1| Hypothetical UPF0054 protein gbs1562/SAG1501 [Streptococcus agalactiae 18RS21] Length = 42 Score = 64.3 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 + L +HGFLH+ GYDH ++ M L+ IL G+ Sbjct: 1 MGFLAVHGFLHINGYDHYTPEEEKEMFSLQEEILTAYGLK 40 >gi|15835320|ref|NP_297079.1| hypothetical protein TC0705 [Chlamydia muridarum Nigg] gi|270285492|ref|ZP_06194886.1| hypothetical protein CmurN_03563 [Chlamydia muridarum Nigg] gi|270289504|ref|ZP_06195806.1| hypothetical protein CmurW_03658 [Chlamydia muridarum Weiss] gi|301336889|ref|ZP_07225091.1| hypothetical protein CmurM_03620 [Chlamydia muridarum MopnTet14] gi|62901393|sp|Q9PJX1|RRMF_CHLMU RecName: Full=Probable rRNA maturation factor gi|7190736|gb|AAF39519.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 161 Score = 63.9 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 14/152 (9%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 QI + N +I L+++ +V I K + ++ + F + L+ E Sbjct: 10 QIFISNEQQDVDIDLQSVQRLV--------ILFLELQKVSTDQVYIYFLSDAALAQLHDE 61 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI---EANVLGKEFENHLVHLI 130 T+ ++ P +LG+ ++ + + + + Sbjct: 62 QFSDPSLTDTITLPIDRP-GIQSFPHVLGEAFVSPRAAMRFLGQYTEAQ--LYHEISRYV 118 Query: 131 IHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 +H LH+LGYD D+D +M E S L L Sbjct: 119 VHSLLHMLGYDDQTDEDKRIMREQEDSSLTFL 150 >gi|221053774|ref|XP_002258261.1| holo-(acyl-carrier protein) synthase [Plasmodium knowlesi strain H] gi|193808094|emb|CAQ38798.1| holo-(acyl-carrier protein) synthase, putative [Plasmodium knowlesi strain H] Length = 628 Score = 63.5 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 70/226 (30%), Gaps = 83/226 (36%) Query: 19 NALWGDEIHLRTLCEVV------------FAKAVSNLISKGYFVKENIVELSLVFTDSHR 66 + +WG+ + + E+V F K + LI F +L++ F ++ Sbjct: 194 DTVWGENYEINSFLEIVNNQTEVPIDLANFEKEIRKLIRLMRF---EDFQLNITFVSLNQ 250 Query: 67 IETLNFEYRGIDKPTNVLSF------------PTAFASSDGCSSLML--GDIVLAYEIIE 112 ++ LN +R ++PT+++S + SD L GDI L I Sbjct: 251 MKELNKTHRRKNEPTDIISLLHYVDNGQGVSGNSELQGSDIPGGRCLRSGDIYLCPAYIS 310 Query: 113 IEANVLGKEFE------------------------------------------------- 123 E + +E Sbjct: 311 RECVLARVNYERSLLNDQSSESGKVEKIGGVSTLDNREDEDRNWEQVRPRGVNKLFRTLF 370 Query: 124 ---NHLVHLIIHGFLHLLGYDHVDDKDA--CVMEGLERSILEDLGI 164 L ++HG +HL DHV++ D M+ E I + L Sbjct: 371 CVQERLALYVLHGLIHLTNKDHVNNADEYNAFMDIEEDMISKYLKF 416 >gi|182414335|ref|YP_001819401.1| hypothetical protein Oter_2519 [Opitutus terrae PB90-1] gi|177841549|gb|ACB75801.1| protein of unknown function UPF0054 [Opitutus terrae PB90-1] Length = 177 Score = 63.5 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 15/129 (11%) Query: 28 LRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF- 86 LR L + A + + ELSLVF + L+ + T+V++F Sbjct: 23 LRALRWLEAHAAEVRVPQPAFL----EGELSLVFLTDVALAQLHASFLDDPTITDVITFE 78 Query: 87 --PTAFASSDGC--SSLMLGDIVLAYEI------IEIEANVLGKEFENHLVHLIIHGFLH 136 P+ + + C + L I + + + F + ++HG+LH Sbjct: 79 GNPSLGTAGEVCVSADAALRQIGIDPARGTKSRAARRLSVAQQRLFSAEVTLYLVHGWLH 138 Query: 137 LLGYDHVDD 145 L GYD + Sbjct: 139 LAGYDDLQP 147 >gi|166154635|ref|YP_001654753.1| hypothetical protein CTL0681 [Chlamydia trachomatis 434/Bu] gi|166155510|ref|YP_001653765.1| hypothetical protein CTLon_0677 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255348789|ref|ZP_05380796.1| hypothetical protein Ctra70_02230 [Chlamydia trachomatis 70] gi|255503329|ref|ZP_05381719.1| hypothetical protein Ctra7_02240 [Chlamydia trachomatis 70s] gi|255507008|ref|ZP_05382647.1| hypothetical protein CtraD_02220 [Chlamydia trachomatis D(s)2923] gi|301335902|ref|ZP_07224146.1| hypothetical protein CtraL_03715 [Chlamydia trachomatis L2tet1] gi|226702063|sp|B0B7Z4|RRMF_CHLT2 RecName: Full=Probable rRNA maturation factor gi|226702064|sp|B0BC59|RRMF_CHLTB RecName: Full=Probable rRNA maturation factor gi|165930623|emb|CAP04120.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu] gi|165931498|emb|CAP07074.1| conserved hypothetical protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|289525466|emb|CBJ14943.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2] gi|296435018|gb|ADH17196.1| hypothetical protein E150_02215 [Chlamydia trachomatis E/150] gi|296438738|gb|ADH20891.1| hypothetical protein E11023_02200 [Chlamydia trachomatis E/11023] Length = 161 Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 10/150 (6%) Query: 14 QIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFE 73 QI + N I L++ +V + K + ++ + F D + L+ E Sbjct: 10 QIFISNEQQDVSIDLQSAQRLV--------VLFLELQKVSTDQVYVYFLDDTALAQLHDE 61 Query: 74 YRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKE-FENHLVHLIIH 132 T+ ++ P +LG+ ++ + ++ + + ++H Sbjct: 62 QFSDPSLTDTITLPID-KPGIASFPHVLGEAFVSPKAAMRFLEQYTEDQLYHEISRYVVH 120 Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDL 162 LH+LGYD D+D +M+ E L L Sbjct: 121 SLLHMLGYDDQTDEDKRIMQEQEDVSLSFL 150 >gi|74001574|ref|XP_855646.1| PREDICTED: similar to UPF0054 protein C21orf57 isoform 2 [Canis familiaris] Length = 73 Score = 63.1 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA 91 +L L+ D+ ++ LN YRG D+PT+VLSFP Sbjct: 33 RDFDLGLLCVDNEGMQRLNRAYRGDDRPTDVLSFPFHEE 71 >gi|323698302|ref|ZP_08110214.1| protein of unknown function UPF0054 [Desulfovibrio sp. ND132] gi|323458234|gb|EGB14099.1| protein of unknown function UPF0054 [Desulfovibrio desulfuricans ND132] Length = 164 Score = 62.4 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 11/81 (13%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFAS-----------SDGCSSLMLGDIVLA 107 L D I LN E+ G PTN+LSFP LG++ L+ Sbjct: 46 LKLVDDREIARLNREFLGCTGPTNILSFPARDGDGTDALADGEVGDPEDDGEFLGELALS 105 Query: 108 YEIIEIEANVLGKEFENHLVH 128 + + E ++ G+ HL Sbjct: 106 VDALARETDLYGQLPLEHLAR 126 >gi|156098161|ref|XP_001615113.1| holo-(acyl-carrier protein) synthase [Plasmodium vivax SaI-1] gi|148803987|gb|EDL45386.1| holo-(acyl-carrier protein) synthase, putative [Plasmodium vivax] Length = 511 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 12/100 (12%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDG 95 F K V LI F +L++ F ++ +N +RG ++PT+V+S S +G Sbjct: 58 FEKEVRKLIHLMRF---EDFQLNITFVSLKEMKEVNRTHRGKNEPTDVISLLHCVHSGEG 114 Query: 96 CSS---------LMLGDIVLAYEIIEIEANVLGKEFENHL 126 S L GDI L I E + +E L Sbjct: 115 VSPGGDFASGGGLRSGDIYLCPAYISRECVLARVRYERGL 154 >gi|224005883|ref|XP_002291902.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972421|gb|EED90753.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 272 Score = 60.5 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 122 FENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 E L LI+HG LHL+GYDH++D D +M E ++ +L Sbjct: 211 PEIRLHMLIVHGMLHLVGYDHIEDDDYELMVVREDEVMAEL 251 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 13/80 (16%) Query: 49 FVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS--FPTAFASSDGCSSLM------ 100 + ++SL D + +N E RG+D T+VLS F F + Sbjct: 59 ILGYPTYDVSLTLIDDDYMRDVNAETRGVDASTDVLSFCFSDDFVEPGVLGEVPLHGRYI 118 Query: 101 -----LGDIVLAYEIIEIEA 115 LG+++++ + + Sbjct: 119 GDYYCLGEMLISVDYVRRRC 138 >gi|167737212|ref|ZP_02409986.1| hypothetical protein Bpse14_04051 [Burkholderia pseudomallei 14] Length = 39 Score = 60.5 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query: 132 HGFLHLLGYDHV-DDKDACVMEGLERSILEDLGINDPYE 169 HG LH GYDH ++DA ME LE IL LG +PY Sbjct: 1 HGALHAQGYDHERGEEDAAEMEALEIDILAKLGFPNPYR 39 >gi|124505535|ref|XP_001351509.1| holo-(acyl-carrier protein) synthase, putative [Plasmodium falciparum 3D7] gi|23498267|emb|CAD49239.1| holo-(acyl-carrier protein) synthase, putative [Plasmodium falciparum 3D7] Length = 594 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 20/106 (18%) Query: 36 FAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS-FPTAFASSD 94 F K V LI + L++ F ++ +N ++R D T+V+S + Sbjct: 201 FEKEVRKLIE---ILNYKNFHLNITFVSLEEMKRINKKHRNKDMATDVISILHYLDDPNY 257 Query: 95 GCSSLML------------GDIVLAYEIIEIEA----NVLGKEFEN 124 + L GDI L E I E K + Sbjct: 258 DYNYDFLKNAIGGKKGFKSGDIYLCPEYINRECFLSRMNYEKSLLD 303 Score = 35.0 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 121 EFENHLVHLIIHGFLHLLGYDHVDD-KDACVMEGLERSILEDL 162 L ++HGF+HL+ DH ++ ++ +E +I++ Sbjct: 381 SVNERLPFYVLHGFVHLMHKDHENNVEEYNEFMDIEENIIKKY 423 >gi|119629698|gb|EAX09293.1| chromosome 21 open reading frame 57, isoform CRA_e [Homo sapiens] Length = 79 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163 HG HLLG+ H + + M E+++L++LG Sbjct: 28 ATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELG 61 >gi|311695360|gb|ADP98233.1| predicted metal-dependent hydrolase [marine bacterium HP15] Length = 44 Score = 59.3 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/38 (52%), Positives = 27/38 (71%) Query: 134 FLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LHL G+DH++D+DA VME LE +L LG +PYE + Sbjct: 1 MLHLQGFDHIEDEDAEVMEALEVRLLAQLGFGNPYEAE 38 >gi|213029864|ref|ZP_03344311.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 43 Score = 58.1 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/37 (54%), Positives = 25/37 (67%) Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LHLLGYDH+DD +A ME LE I+ +G DPY + Sbjct: 3 LHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 39 >gi|213027668|ref|ZP_03342115.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 36 Score = 57.8 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 22/35 (62%) Query: 99 LMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHG 133 +LGD+++ +++E EA K E H H+++HG Sbjct: 2 PLLGDLIICRQVVEQEAQEQSKPLEAHWAHMVVHG 36 >gi|330444255|ref|YP_004377241.1| hypothetical protein G5S_0564 [Chlamydophila pecorum E58] gi|328807365|gb|AEB41538.1| conserved hypothetical protein [Chlamydophila pecorum E58] Length = 157 Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 59 LVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEI--EAN 116 + F + + L+ + T+ ++ P +LG+ ++ + + Sbjct: 44 VYFLEDKALAQLHDQVFSDPSLTDTITLPID-PPGASSYPHVLGEAFISPKAAQRFLRCE 102 Query: 117 VLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSIL 159 L ++ + ++H LH+L Y+ + M E +L Sbjct: 103 DLSEQVYEEVSRYLVHSLLHMLNYEDTTPEKKRKMRVKENLLL 145 >gi|307069660|ref|YP_003878137.1| hypothetical protein ZICARI_187 [Candidatus Zinderia insecticola CARI] gi|306482920|gb|ADM89791.1| hypothetical protein ZICARI_187 [Candidatus Zinderia insecticola CARI] Length = 139 Score = 56.2 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 5/92 (5%) Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 +I+ +NF ++ TN+L+F + S+ I + +I++ E + +N+ Sbjct: 43 KIKKINFTFKKKKNVTNILTFKNIYNKIIIDSN-----IYICLKILKKECKNKNIKLKNY 97 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERS 157 ++I+HG LH + H + K+ M+ E Sbjct: 98 FFYIIMHGILHSYNFKHNNFKNYKEMKKKEIY 129 >gi|78356694|ref|YP_388143.1| hypothetical protein Dde_1651 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552550|sp|Q311E8|RRMF_DESDG RecName: Full=Probable rRNA maturation factor gi|78219099|gb|ABB38448.1| Protein of unknown function UPF0054 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 169 Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 17/86 (19%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFA------SSDGCS-----------SL 99 + ++ TD LN E+ G PTN+LSFP A D Sbjct: 39 VEVILTDDGESAQLNREFLGCYGPTNILSFPAAGPVAAPRQEPDSPPACRKDSSHAEDDT 98 Query: 100 MLGDIVLAYEIIEIEANVLGKEFENH 125 LG + L+ + E+ + G+ H Sbjct: 99 DLGVLALSTGAVHRESFLYGQPPHRH 124 >gi|328480085|gb|EGF49072.1| metalloprotease [Lactobacillus rhamnosus MTCC 5462] Length = 35 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HGFLHL GYDH+ +D VM L++ IL G+ Sbjct: 1 HGFLHLNGYDHIKPEDEAVMIPLQKKILTAYGLT 34 >gi|169840971|ref|ZP_02874084.1| Hypothetical Metal-Binding Protein [candidate division TM7 single-cell isolate TM7a] Length = 34 Score = 52.7 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 19/32 (59%) Query: 133 GFLHLLGYDHVDDKDACVMEGLERSILEDLGI 164 G LHLLGYDH++++D VM E IL Sbjct: 1 GMLHLLGYDHIEEEDKAVMRRREEEILSKFNY 32 >gi|58700115|ref|ZP_00374639.1| metal-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58533369|gb|EAL57844.1| metal-binding protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 35 Score = 50.8 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 17/31 (54%), Positives = 20/31 (64%) Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 LHLLGYDH + +M+ LER IL LG N Sbjct: 1 LHLLGYDHQKKDEEIIMKNLEREILASLGYN 31 >gi|156085890|ref|XP_001610354.1| hypothetical protein [Babesia bovis T2Bo] gi|154797607|gb|EDO06786.1| membrane protein, putative [Babesia bovis] Length = 217 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 33/129 (25%) Query: 54 IVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFP-----------TAFASSDGCSSLMLG 102 ++ ++F D+ + N + G T+++S + LG Sbjct: 89 DFQVDVIFLDTKEMTECNSNHFGKHHATDIISLAENSLYTKDKYNLNRSPQLVADFRNLG 148 Query: 103 DIVLAYEIIEIE---ANVLGKEFENHLVHLIIHGFL------HL--LGYDHVDDKDACVM 151 +I + + I + + G H YDHV+D D M Sbjct: 149 EINMCPDYIYKQMIGDQEYSNQ-----------GVCQIKADKHCDENAYDHVEDNDFEEM 197 Query: 152 EGLERSILE 160 E +L+ Sbjct: 198 LLQEDRLLD 206 >gi|213581737|ref|ZP_03363563.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 39 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 138 LGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LGYDH+DD +A ME LE I+ +G DPY + Sbjct: 2 LGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 35 >gi|71032427|ref|XP_765855.1| hypothetical protein [Theileria parva strain Muguga] gi|68352812|gb|EAN33572.1| hypothetical protein TP01_0329 [Theileria parva] Length = 252 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 42/139 (30%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLS-----------FPTAFASSDGCSSLMLGDIV 105 L + D ++ +NF+ G D PT+++S F + LG+I Sbjct: 124 LDIFIEDEKNMKRINFKQLGGDGPTDIISIRDDLLYLRSDFHKNRSPQKPSQHYHLGEIF 183 Query: 106 LAYEIIE-----------IEANVLGKEFENHLVHLIIHGFLHLLG--YDHVDDKDACVME 152 L I+ K +G YDH ++ M Sbjct: 184 LCPGFIKGVIDSENKLGLKTPEKFEKSLN--------------VGKRYDHEKEEWFNKMA 229 Query: 153 GLERSILED----LGINDP 167 G+E +L+ L I++P Sbjct: 230 GMEDVLLDAFIDILPIDNP 248 >gi|167517114|ref|XP_001742898.1| hypothetical protein [Monosiga brevicollis MX1] gi|163779522|gb|EDQ93136.1| predicted protein [Monosiga brevicollis MX1] Length = 1216 Score = 46.2 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 17/37 (45%) Query: 57 LSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASS 93 + L D I N YR +D T+VLSF A + Sbjct: 2 VGLYVADDATIREHNLRYRRVDAVTDVLSFAAAPKAP 38 >gi|289807196|ref|ZP_06537825.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 50 Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 12/59 (20%) Query: 19 NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGI 77 NA DE + + V + + E+++ D LN YRG Sbjct: 4 NAGLPDEAQFQRWLDGVIPQ------------FQEEAEVTIRLVDEAESHDLNLTYRGK 50 >gi|213422920|ref|ZP_03355946.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 36 Score = 45.0 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 140 YDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 YDH+DD +A ME LE I+ +G DPY + Sbjct: 1 YDHIDDDEAEEMESLETEIMLAMGYEDPYIAE 32 >gi|237755517|ref|ZP_04584138.1| putative metalloprotease [Sulfurihydrogenibium yellowstonense SS-5] gi|237692341|gb|EEP61328.1| putative metalloprotease [Sulfurihydrogenibium yellowstonense SS-5] Length = 37 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 134 FLHLLGYDHVD-DKDACVMEGLERSILEDL 162 LHLLGYDH ++DA +M L+ I + L Sbjct: 1 ILHLLGYDHETNEEDAKIMFELQDKIFDKL 30 >gi|153813757|ref|ZP_01966425.1| hypothetical protein RUMOBE_04191 [Ruminococcus obeum ATCC 29174] gi|149830144|gb|EDM85238.1| hypothetical protein RUMOBE_04191 [Ruminococcus obeum ATCC 29174] Length = 30 Score = 44.3 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 19/28 (67%) Query: 138 LGYDHVDDKDACVMEGLERSILEDLGIN 165 LGYDH++ +A VME + LE+LGI Sbjct: 2 LGYDHMEPDEAAVMETKQAKALENLGIT 29 >gi|207108397|ref|ZP_03242559.1| putative metalloprotease [Helicobacter pylori HPKX_438_CA4C1] Length = 42 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Query: 132 HGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 HG LHLLGYDH +KD E +++ + Sbjct: 2 HGVLHLLGYDH--EKDKGEQRQKESELIKAFNLP 33 >gi|3089170|gb|AAC14874.1| hypothetical protein [Chlorobaculum tepidum] Length = 44 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 20/42 (47%) Query: 121 EFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDL 162 FE+ L+ + IH LHL+GYD + M E L L Sbjct: 1 SFEDELLRVTIHSALHLMGYDDETSELRAAMSLREDHYLYRL 42 >gi|169841998|ref|ZP_02875103.1| hypothetical protein cdivTM_32847 [candidate division TM7 single-cell isolate TM7a] Length = 42 Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 18/31 (58%) Query: 100 MLGDIVLAYEIIEIEANVLGKEFENHLVHLI 130 MLGDIV++ + + +++ G E +++ Sbjct: 1 MLGDIVISIDRVREQSSEYGHSDEREFYYVL 31 >gi|325116812|emb|CBZ52365.1| phosphopantethiene--protein transferase domain containing protein [Neospora caninum Liverpool] Length = 593 Score = 40.0 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 124 NHLVHLIIHGFLHLLGYDHVDD 145 L L +H LHLLG+DH +D Sbjct: 228 ERLPLLFMHASLHLLGFDHEED 249 >gi|58699077|ref|ZP_00373913.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58534405|gb|EAL58568.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 41 Score = 38.1 bits (88), Expect = 0.40, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 140 YDHVDDKDACVMEGLERSILEDLGIN 165 YDH + +M+ LER IL LG N Sbjct: 12 YDHQKKDEEIIMKNLEREILASLGYN 37 >gi|302794552|ref|XP_002979040.1| hypothetical protein SELMODRAFT_109756 [Selaginella moellendorffii] gi|300153358|gb|EFJ19997.1| hypothetical protein SELMODRAFT_109756 [Selaginella moellendorffii] Length = 576 Score = 37.0 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + L EVV AK V N+ + + + E+S+ I +LN Sbjct: 498 DIARLQEVVTAKWVKNVFATAFVGQAGEAEVSVYLV--EGIHSLN 540 >gi|297519634|ref|ZP_06938020.1| putative metalloprotease [Escherichia coli OP50] Length = 54 Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 13/66 (19%) Query: 6 VNLPRLDLQIAVE-NALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 ++ LDLQ+A E N+ +E +T V + + E+++ D+ Sbjct: 1 MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQKESEVTIRVVDT 48 Query: 65 HRIETL 70 +L Sbjct: 49 AESHSL 54 >gi|226314647|ref|YP_002774543.1| hypothetical protein BBR47_50620 [Brevibacillus brevis NBRC 100599] gi|226097597|dbj|BAH46039.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 599 Score = 36.6 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 9/50 (18%) Query: 106 LAYE----IIEIEANVLGKEFEN----HLVHLIIHGFLHLLGYDHVDDKD 147 + + ++ E ++ ++++ H LHL G+ H +K+ Sbjct: 43 ICPDNGWVVVTREGSLYAHPKRRGEVGEWIYVLAHALLHL-GFGHFVEKE 91 >gi|302819681|ref|XP_002991510.1| hypothetical protein SELMODRAFT_186105 [Selaginella moellendorffii] gi|300140712|gb|EFJ07432.1| hypothetical protein SELMODRAFT_186105 [Selaginella moellendorffii] Length = 598 Score = 36.2 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 27 HLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLN 71 + L EVV A+ V N+ + + + E+S+ I +LN Sbjct: 520 DIARLQEVVTARWVKNVFATAFVGQAGEAEVSVYLV--EGIHSLN 562 >gi|270708967|ref|ZP_06223147.1| YbeY protein [Haemophilus influenzae HK1212] gi|270315698|gb|EFA27859.1| YbeY protein [Haemophilus influenzae HK1212] Length = 55 Score = 36.2 bits (83), Expect = 1.7, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 11/61 (18%) Query: 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETL 70 +DLQIA EN + + + + + + + VE+++ D L Sbjct: 6 VDLQIATEN-----------IEGLPTEEQIVQWATAAVQPEGDEVEMTVRIVDEAESHEL 54 Query: 71 N 71 N Sbjct: 55 N 55 >gi|213852454|ref|ZP_03381986.1| putative metalloprotease [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 31 Score = 35.4 bits (81), Expect = 2.5, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 145 DKDACVMEGLERSILEDLGINDPYEVD 171 D +A ME LE I+ +G DPY + Sbjct: 1 DDEAEEMESLETEIMLAMGYEDPYIAE 27 >gi|225716858|gb|ACO14275.1| High choriolytic enzyme 1 precursor [Esox lucius] Length = 284 Score = 35.4 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%) Query: 107 AYEIIEIEANVLGKEFEN-HLVHLII--HGFLHLLGYDHV 143 + + VHL + H LH LG+DH Sbjct: 152 CTSYVGRQGKAQQVSLSRNGCVHLSVVQHEMLHALGFDHE 191 >gi|242781867|ref|XP_002479887.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] gi|218720034|gb|EED19453.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] Length = 480 Score = 35.0 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSL---VFTDSHRIETLNFEYRGIDKPTNVLS 85 V+++ A+ ++ ++ + E+ + I +N EY +PT LS Sbjct: 322 VLWSLALFIVLLALWYCHKRGKEVRVENERLVTEAEIAKMNEEYEQHIRPTETLS 376 >gi|237738952|ref|ZP_04569433.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|229423552|gb|EEO38599.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] Length = 1508 Score = 35.0 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 8/48 (16%) Query: 33 EVVFAKAVSNLISKGYFVKENIVELSLVFTDSHR-----IETLNFEYR 75 E +F + ++ +I YF K+ E++ D+ I+ +N EYR Sbjct: 211 EDIFGQEITQIILTNYFQKQ---EINFRLQDNDERISPRIQEINQEYR 255 >gi|46203302|ref|ZP_00208894.1| hypothetical protein Magn03005964 [Magnetospirillum magnetotacticum MS-1] Length = 59 Score = 34.6 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Query: 12 DLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 ++ IAVE+ W E + L V +AV + VE+S++ D ++T Sbjct: 5 EIDIAVEDGRW--EAAIPDLEGFVL-RAVEAGLDILPDSAGGPVEVSVLLADDATVQT 59 >gi|228899606|ref|ZP_04063861.1| DNA helicase II [Bacillus thuringiensis IBL 4222] gi|228860036|gb|EEN04441.1| DNA helicase II [Bacillus thuringiensis IBL 4222] Length = 645 Score = 34.6 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHL-IIHGFLH 136 D +L + A L K+F +H+ IH FLH Sbjct: 30 DNILCITYTKRAAEELNKDFNEEGIHISTIHSFLH 64 >gi|75762199|ref|ZP_00742094.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490314|gb|EAO53635.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 602 Score = 34.3 bits (78), Expect = 5.4, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHL-IIHGFLH 136 D +L + A L K+F +H+ IH FLH Sbjct: 38 DNILCITYTKRAAEELNKDFNEEGIHISTIHSFLH 72 >gi|212526810|ref|XP_002143562.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224] gi|210072960|gb|EEA27047.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224] Length = 474 Score = 34.3 bits (78), Expect = 5.6, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 34 VVFAKAVSNLISKGYFVKENIVELSL---VFTDSHRIETLNFEYRGIDKPTNVLS 85 V+++ A+ ++ ++ + E+ L I +N EY +PT LS Sbjct: 312 VLWSLALFIVLLALWYCHKRGKEVRLENERLVTEAEIAKMNEEYEQHIRPTETLS 366 >gi|167524944|ref|XP_001746807.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774587|gb|EDQ88214.1| predicted protein [Monosiga brevicollis MX1] Length = 1183 Score = 34.3 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 5 KVNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVE----LSLV 60 V PRL+LQ+ E + +E HL +L + + + +F+ + + L+ Sbjct: 887 PVAEPRLNLQLECE--PYNEERHLPSLVWEAIEQQSQSCTRRCFFLADQRTQRWLLLTAR 944 Query: 61 FTDSHRIET 69 F D + Sbjct: 945 FVDHEAMTD 953 >gi|119503935|ref|ZP_01626017.1| invasion protein IbeA [marine gamma proteobacterium HTCC2080] gi|119460443|gb|EAW41536.1| invasion protein IbeA [marine gamma proteobacterium HTCC2080] Length = 452 Score = 33.9 bits (77), Expect = 7.4, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%) Query: 136 HLLGYDHVDDKD--ACVMEGLERSILE 160 HLLGYD + D MEG E++++ Sbjct: 273 HLLGYDGTNPDDLTRGEMEGREQAMMA 299 >gi|256838827|ref|ZP_05544337.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739746|gb|EEU53070.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1021 Score = 33.9 bits (77), Expect = 7.5, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 19/123 (15%) Query: 2 SVKKVNLPRLDLQIAVENALWGDEIHL---RTLCEVVFAKAV------SNLISKGYFVKE 52 ++ K +P +D + + W + IH+ R +F +A + I + F+ Sbjct: 547 AIPKSRMPEIDQNELIAHVEWNENIHIDENRKRVTELFGEADRLGAQHTAYIGQQQFLLN 606 Query: 53 NIVELSLVFTD-------SHRIETLNFE---YRGIDKPTNVLSFPTAFASSDGCSSLMLG 102 ELS+ + + I L E + + PT VLSF + Sbjct: 607 RDRELSISEVELYFKTEETDAIAPLQQEISAWVKRNYPTAVLSFSPPETVFEKLFVTGEA 666 Query: 103 DIV 105 DIV Sbjct: 667 DIV 669 >gi|170287919|ref|YP_001738157.1| N-acetylglucosamine-6-phosphate deacetylase [Thermotoga sp. RQ2] gi|170175422|gb|ACB08474.1| N-acetylglucosamine-6-phosphate deacetylase [Thermotoga sp. RQ2] Length = 364 Score = 33.9 bits (77), Expect = 8.3, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%) Query: 72 FEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 E R ID PT +L+F SS+ L+ DIVL+ K ++ Sbjct: 138 RELREIDFPTKMLTFAPEIESSELLLKLVERDIVLSAGHSIATFEEFMKFYKE 190 >gi|157803508|ref|YP_001492057.1| glutamyl-tRNA synthetase [Rickettsia canadensis str. McKiel] gi|229470575|sp|A8EY39|SYE1_RICCK RecName: Full=Glutamyl-tRNA synthetase 1; AltName: Full=Glutamate--tRNA ligase 1; Short=GluRS 1 gi|157784771|gb|ABV73272.1| glutamyl-tRNA synthetase [Rickettsia canadensis str. McKiel] Length = 463 Score = 33.9 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 17/108 (15%) Query: 71 NFEYRGID---KPTN---VLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 N ++R D PT+ V+ T S + GD+V+ I+ + Sbjct: 123 NSDWRDKDPAAYPTDIKPVIRLKTPREGSITIRDTLQGDVVIENSHIDDMVLLRSDGTAT 182 Query: 125 HLVHLII--H--GFLHLL-GYDHVDDKDACVMEGLERSILEDLGINDP 167 +++ +++ H G H++ G DH+ + + +I + G P Sbjct: 183 YMLAVVVDDHDMGITHIIRGDDHLTNA------ARQIAIYQACGYAVP 224 >gi|170781659|ref|YP_001709991.1| hypothetical protein CMS_1253 [Clavibacter michiganensis subsp. sepedonicus] gi|169156227|emb|CAQ01369.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 288 Score = 33.9 bits (77), Expect = 8.8, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 12/73 (16%) Query: 53 NIVELSLVFTDSHRIETLNFEYRGIDKPTNVL----SF---PTAFASSDGCSSLMLGDIV 105 +I E+SL + I + RG+D P + L SF L G++V Sbjct: 56 DITEVSLSLVTNEFIAHI----RGLDGPED-LDEASSFLVVAATLLDLKLVGLLPQGELV 110 Query: 106 LAYEIIEIEANVL 118 A ++ +EA L Sbjct: 111 DAEDVALLEARDL 123 >gi|308175724|ref|YP_003922429.1| DNA helicase II [Bacillus amyloliquefaciens DSM 7] gi|307608588|emb|CBI44959.1| DNA helicase II [Bacillus amyloliquefaciens DSM 7] Length = 517 Score = 33.5 bits (76), Expect = 9.9, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 103 DIVLAYEIIEIEANVLGKEFENHLVHL-IIHGFLH 136 D +L + A L K + +H+ IH FLH Sbjct: 38 DNILCITYTKRAAEELKKGLDEEGIHISTIHSFLH 72 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.314 0.176 0.622 Lambda K H 0.267 0.0544 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,108,878,541 Number of Sequences: 14124377 Number of extensions: 200537822 Number of successful extensions: 497151 Number of sequences better than 10.0: 2221 Number of HSP's better than 10.0 without gapping: 4230 Number of HSP's successfully gapped in prelim test: 143 Number of HSP's that attempted gapping in prelim test: 488099 Number of HSP's gapped (non-prelim): 4491 length of query: 171 length of database: 4,842,793,630 effective HSP length: 129 effective length of query: 42 effective length of database: 3,020,748,997 effective search space: 126871457874 effective search space used: 126871457874 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 77 (33.9 bits)