RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780427|ref|YP_003064840.1| hypothetical protein
CLIBASIA_01560 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>gnl|CDD|178796 PRK00016, PRK00016, metal-binding heat shock protein; Provisional.
          Length = 159

 Score =  150 bits (380), Expect = 3e-37
 Identities = 65/166 (39%), Positives = 82/166 (49%), Gaps = 14/166 (8%)

Query: 12  DLQIAVEN-ALWGDEIHLRTLCEVV-FAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69
           DL I VEN      E+      E+  FA     +  +         ELS+   D+  I  
Sbjct: 1   DLSIEVENETGLPSEVDFELWLEIALFALDKLGVQPE--------AELSIRLVDNEEIRE 52

Query: 70  LNFEYRGIDKPTNVLSFP----TAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125
           LN EYRG DKPT+VLSFP                 LGDIV+  E+ E +A   G   E  
Sbjct: 53  LNLEYRGKDKPTDVLSFPMDELPLLEDDGEEGPAYLGDIVICPEVAEEQAEEQGHSLERE 112

Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171
           L HL +HG LHLLGYDH++D++A  M GLE  IL  LG+  PY  +
Sbjct: 113 LAHLTVHGILHLLGYDHIEDEEAEEMFGLEEEILAALGLPRPYIAE 158


>gnl|CDD|161678 TIGR00043, TIGR00043, metalloprotein, YbeY/UPF0054 family.  This
           minimally protein family is represented by a single
           member sequence only in nearly every bacterium.
           Crystallography demonstrates metal-binding activity,
           possibly to nickel. It is a predicted to be a
           metallohydrolase, and somewhat more weakly to be a
           metalloproteinase.
          Length = 110

 Score =  125 bits (317), Expect = 5e-30
 Identities = 51/109 (46%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 56  ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTA-FASSDGCSSLMLGDIVLAYEIIEIE 114
           ELSL+F D   I+ LN EYR  D PT+VLSFP       DG    +LGDIV++ E+ + +
Sbjct: 2   ELSLLFVDDEEIQELNREYRDKDYPTDVLSFPYEEEEPPDGFPEEVLGDIVISLEVAKEQ 61

Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLG 163
           A   G   E  L HL +HG LHLLGYDH  + +   M  LE  IL  LG
Sbjct: 62  AKEYGHSLERELAHLTVHGLLHLLGYDHETEDEEKEMFALEEEILALLG 110


>gnl|CDD|184423 PRK13963, PRK13963, unkown domain/putative metalloprotease fusion
           protein; Provisional.
          Length = 258

 Score =  105 bits (263), Expect = 7e-24
 Identities = 51/113 (45%), Positives = 65/113 (57%), Gaps = 4/113 (3%)

Query: 56  ELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEA 115
           +L++ F       TLN  YRG D  TNVL+F  A+A        ++GD+VL   ++E EA
Sbjct: 149 QLTVRFVGEEEGRTLNRGYRGKDYATNVLTF--AYAEEPD--GPVIGDLVLCCPVVEKEA 204

Query: 116 NVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168
              GK  E H  HL++HG LH  GYDH DD+DA  ME LE  IL  LG  +PY
Sbjct: 205 REQGKPLEAHYAHLLVHGALHAQGYDHEDDEDAAEMEALETDILAKLGFPNPY 257


>gnl|CDD|178475 PLN02887, PLN02887, hydrolase family protein.
          Length = 580

 Score = 66.1 bits (161), Expect = 5e-12
 Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 55  VELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIE 114
           VELS++  +   I  LN E+RG D  T+VLS             LMLGDIV++ E    +
Sbjct: 160 VELSVMLCNDDFIRKLNKEWRGEDHATDVLSMSQHVPGLK-LPVLMLGDIVISVETAARQ 218

Query: 115 ANVLGKEFENHLVHLIIHGFLHLLGYDH-VDDKDACVMEGLERSILEDLG 163
           A   G    + +  L++HG LHLLG+DH + ++    ME  E  +L+ LG
Sbjct: 219 AEERGHTLLDEIRILVVHGLLHLLGFDHEISNEAEAEMEKEEELLLKSLG 268


>gnl|CDD|179885 PRK04841, PRK04841, transcriptional regulator MalT; Provisional.
          Length = 903

 Score = 31.5 bits (72), Expect = 0.12
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 102 GDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLH------LLGYDHVDDKDACVMEGLE 155
           G +  AYE  E +A  L +E   HL  L +H FL       L  +  +D+ + C  +GLE
Sbjct: 545 GFLQAAYETQE-KAFQLIEE--QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601

Query: 156 RSILEDLG 163
             +L +  
Sbjct: 602 --VLSNYQ 607


>gnl|CDD|148856 pfam07485, DUF1529, Domain of Unknown Function (DUF1259).  This
           family is the lppY/lpqO homologue family.
          Length = 123

 Score = 26.4 bits (59), Expect = 3.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 79  KPTNVLSFPTAFASSDGCSSLMLGDIVL 106
            P   L+   AF  + G  +L++GD VL
Sbjct: 38  PPAMGLTTWAAFEPTGGGRALVMGDFVL 65


>gnl|CDD|183540 PRK12462, PRK12462, phosphoserine aminotransferase; Provisional.
          Length = 364

 Score = 25.2 bits (55), Expect = 8.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 135 LHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170
           L +LG  H     + ++   E  + + LGI D Y V
Sbjct: 35  LSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGV 70


>gnl|CDD|128531 smart00235, ZnMc, Zinc-dependent metalloprotease.  Neutral zinc
           metallopeptidases. This alignment represents a subset of
           known subfamilies. Highest similarity occurs in the
           HExxH zinc-binding site/ active site.
          Length = 140

 Score = 25.0 bits (55), Expect = 9.6
 Identities = 5/19 (26%), Positives = 6/19 (31%)

Query: 130 IIHGFLHLLGYDHVDDKDA 148
             H   H LG  H   +  
Sbjct: 90  AAHELGHALGLYHEQSRSD 108


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,757,779
Number of extensions: 167635
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 10
Length of query: 171
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,114,577
Effective search space: 345624468
Effective search space used: 345624468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)