HHsearch alignment for GI: 254780429 and conserved domain: PRK00039

>PRK00039 ruvC Holliday junction resolvase; Reviewed.
Probab=94.64  E-value=0.26  Score=28.78  Aligned_cols=100  Identities=14%  Similarity=0.143  Sum_probs=58.8

Q ss_pred             CCEEEEECCCHHHEEEEEECCCCEE--EEEEEEE--CCHHHHHHH---HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHH
Q ss_conf             9278862168012789997798139--9999984--226899989---99999999760999878665430378543202
Q gi|254780429|r    1 MIVLALDTTGADCSVAIYDSHAGRI--LGSYFKN--LGRGHAEHL---MPAIDYALKDSRLEVSQVDRVVTALGPGSFTG   73 (206)
Q Consensus         1 M~iLaIdTs~~~~sval~~~~~~~~--~~~~~~~--~~r~hs~~L---~~~i~~lL~~~~~~~~~id~iav~~GPGSFTG   73 (206)
T Consensus         2 MrILGIDPGl~~tG~gvie~~~~~~~~i~~G~I~t~~~~~~~~RL~~I~~~l~~li~~~~P~~~AiE~~F~~kN~~tai~   81 (169)
T PRK00039          2 MRILGIDPGLRRTGYGVIEVEGRKLSYVASGVIRTTSDDDLPERLKQIFDGLSEVIDQYQPDEAAIEQVFVNKNPQSTLK   81 (169)
T ss_pred             CEEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCHHHHHH
T ss_conf             58999883668608999997699689999889957999998999999999999999965996564537887336889999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             466899999999732687110383899
Q gi|254780429|r   74 VRVSIAVARGISLVLKQPALGVGNLEV  100 (206)
Q Consensus        74 lRigia~akgLa~~~~~pv~gvssle~  100 (206)
T Consensus        82 lgqARGvillaa~~~~i~v~eysP~~V  108 (169)
T PRK00039         82 LGQARGVAILAAARRGLPVAEYTPLQV  108 (169)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCHH
T ss_conf             999999999999983897588870744