HHsearch alignment of GI: 254780429 and MMDB domain: 1hjr_A_

>1hjr_A (A:) Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli}
Probab=96.24  E-value=0.033  Score=34.17  Aligned_cols=100  Identities=13%  Similarity=0.131  Sum_probs=76.6

Q ss_pred             CEEEEECCCHHHEEEEEECCCCEE--EEEEE-EECCHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHH
Q ss_conf             278862168012789997798139--99999-842268---999899999999976099987866543037854320246
Q gi|254780429|r    2 IVLALDTTGADCSVAIYDSHAGRI--LGSYF-KNLGRG---HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVR   75 (206)
Q Consensus         2 ~iLaIdTs~~~~sval~~~~~~~~--~~~~~-~~~~r~---hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlR   75 (206)
                      .||+||-|+..+.+|+++.+.++.  +..-. ...+..   ....|.-.+.+++++.+.+.--|..+.++..+.+...+-
T Consensus         2 rvLgiDpg~~~tG~av~~~~~~~~~~i~~g~i~~~~~~~~~R~~~i~~~l~~~l~~~~p~~v~iE~~~~~~~~~s~~~l~   81 (158)
T 1hjr_A            2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLG   81 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHH
T ss_pred             EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHH
T ss_conf             89998457784689999966997899995348459877799999999999999863598669998412215735788899


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf             68999999997326871103838999
Q gi|254780429|r   76 VSIAVARGISLVLKQPALGVGNLEVL  101 (206)
Q Consensus        76 igia~akgLa~~~~~pv~gvssle~l  101 (206)
                      -...++.+.+...++|+.-|+-.+.-
T Consensus        82 ~~~G~i~~~~~~~~ipi~~v~P~~vK  107 (158)
T 1hjr_A           82 QARGVAIVAAVNQELPVFEYAARQVK  107 (158)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEECHHHHH
T ss_conf             99999999999759738997689988