Query gi|254780429|ref|YP_003064842.1| hypothetical protein CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 206 No_of_seqs 112 out of 2787 Neff 8.5 Searched_HMMs 33803 Date Wed Jun 1 12:49:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780429.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2gel_A Putative GRAM negative 99.9 5.1E-27 1.5E-31 195.3 7.2 126 1-129 1-130 (135) 2 >3en9_A Glycoprotease, O-sialo 99.9 3.7E-26 1.1E-30 189.7 10.0 106 1-109 6-123 (165) 3 >2ivn_A O-sialoglycoprotein en 99.9 7E-26 2.1E-30 188.0 9.2 105 1-107 1-117 (166) 4 >3eno_A Putative O-sialoglycop 99.9 1.4E-24 4.2E-29 179.4 9.9 106 1-108 6-123 (173) 5 >2a6a_A Hypothetical protein T 99.9 1E-24 3E-29 180.4 8.2 98 1-102 13-110 (149) 6 >2gel_A Putative GRAM negative 98.8 3.2E-08 9.3E-13 73.3 7.6 76 97-172 1-82 (96) 7 >1saz_A Probable butyrate kina 96.6 0.024 7E-07 35.1 8.9 94 1-96 2-128 (221) 8 >1hjr_A Holliday junction reso 96.2 0.033 9.9E-07 34.2 8.2 100 2-101 2-107 (158) 9 >1hux_A Activator of (R)-2-hyd 96.0 0.01 3E-07 37.5 4.6 96 1-98 3-104 (127) 10 >2h3g_X Biosynthetic protein; 95.5 0.028 8.4E-07 34.6 5.3 87 2-96 1-89 (121) 11 >2iir_A Acetate kinase; transf 94.7 0.33 9.7E-06 27.7 8.8 98 1-101 1-127 (182) 12 >1vhx_A Putative holliday junc 94.5 0.087 2.6E-06 31.5 5.4 96 1-101 3-106 (150) 13 >2ch5_A NAGK protein; transfer 94.0 0.45 1.3E-05 26.8 8.3 99 2-101 7-114 (153) 14 >3h3n_X Glycerol kinase; ATP-b 94.0 0.12 3.4E-06 30.7 5.2 63 3-66 7-82 (107) 15 >3jvp_A Ribulokinase; PSI-II, 93.9 0.076 2.2E-06 31.8 4.1 64 3-66 7-94 (224) 16 >1zc6_A Probable N-acetylgluco 93.6 0.24 7E-06 28.7 6.2 68 3-71 13-87 (147) 17 >3djc_A Type III pantothenate 93.3 0.22 6.5E-06 28.8 5.7 74 1-76 1-75 (147) 18 >3g25_A Glycerol kinase; IDP00 93.2 0.29 8.7E-06 28.0 6.2 63 2-65 7-82 (109) 19 >3i8b_A Xylulose kinase; strai 93.0 0.15 4.3E-06 30.0 4.4 98 3-102 7-131 (163) 20 >2qm1_A Glucokinase; alpha-bet 92.4 0.62 1.8E-05 25.9 7.0 101 2-103 7-123 (150) 21 >1g99_A Acetate kinase; alpha/ 92.2 0.88 2.6E-05 24.9 9.6 99 1-102 1-129 (189) 22 >2zf5_O Glycerol kinase; hyper 91.3 0.8 2.4E-05 25.2 6.5 101 1-102 1-139 (238) 23 >2dpn_A Glycerol kinase; therm 90.5 1.1 3.1E-05 24.4 6.5 101 1-102 1-140 (241) 24 >3l0q_A Xylulose kinase; xlylu 90.2 1.3 3.8E-05 23.9 6.7 67 3-70 7-87 (297) 25 >2w40_A Glycerol kinase, putat 89.8 0.63 1.9E-05 25.9 4.9 64 1-65 3-82 (110) 26 >2ap1_A Putative regulator pro 89.8 0.29 8.6E-06 28.1 3.1 98 2-100 25-132 (143) 27 >2iik_A 3-ketoacyl-COA thiolas 89.5 1.3 3.9E-05 23.8 6.3 89 35-123 53-149 (418) 28 >1z05_A Transcriptional regula 89.2 1 3E-05 24.6 5.5 67 3-71 5-75 (111) 29 >3ifr_A Carbohydrate kinase, F 88.7 1.1 3.2E-05 24.4 5.4 67 2-69 8-88 (242) 30 >2e1z_A Propionate kinase; TDC 88.6 1.8 5.3E-05 22.9 8.4 96 1-100 18-135 (195) 31 >3eo3_A Bifunctional UDP-N-ace 88.5 0.6 1.8E-05 26.0 4.0 102 1-103 20-136 (163) 32 >2a6a_A Hypothetical protein T 87.3 1 3E-05 24.5 4.6 56 97-155 1-58 (69) 33 >2vu1_A Acetyl-COA acetyltrans 87.3 0.95 2.8E-05 24.7 4.4 83 35-117 25-114 (392) 34 >1iv0_A Hypothetical protein; 87.2 0.4 1.2E-05 27.2 2.4 85 1-93 1-89 (98) 35 >2hoe_A N-acetylglucosamine ki 86.6 1 3E-05 24.5 4.2 100 2-103 3-118 (149) 36 >2e2o_A Hexokinase; acetate an 86.3 1.1 3.4E-05 24.2 4.4 93 1-100 2-98 (130) 37 >3bzc_A TEX; helix-turn-helix, 86.0 2.5 7.4E-05 22.0 7.6 87 2-96 5-95 (142) 38 >2d4w_A Glycerol kinase; alpha 85.1 2.8 8.2E-05 21.7 6.3 64 3-67 4-80 (244) 39 >3il3_A 3-oxoacyl-[acyl-carrie 84.6 2.4 7E-05 22.2 5.3 64 34-98 21-84 (289) 40 >1z6r_A MLC protein; transcrip 84.2 1.3 3.7E-05 23.9 3.8 91 2-93 4-109 (112) 41 >1ulq_A Putative acetyl-COA ac 83.0 0.75 2.2E-05 25.4 2.2 83 35-117 24-114 (401) 42 >3gwa_A 3-oxoacyl-(acyl-carrie 82.7 1.1 3.3E-05 24.3 3.0 92 26-117 33-132 (168) 43 >3il6_A 3-oxoacyl-[acyl-carrie 82.4 3.6 0.00011 21.0 6.0 86 31-117 12-104 (138) 44 >3gbt_A Gluconate kinase; LBA0 82.2 1.5 4.5E-05 23.4 3.5 65 1-66 3-78 (237) 45 >2ib8_A Acetyl-COA acetyltrans 81.9 0.76 2.3E-05 25.3 1.9 83 35-117 30-119 (395) 46 >2kho_A Heat shock protein 70; 81.6 0.42 1.2E-05 27.0 0.5 75 1-75 6-83 (96) 47 >1sz2_A Glucokinase, glucose k 81.5 1.5 4.4E-05 23.4 3.3 98 1-104 14-118 (141) 48 >2aa4_A Mannac kinase, putativ 80.4 2.9 8.5E-05 21.6 4.5 99 1-103 1-111 (134) 49 >2p3r_A Glycerol kinase; glyce 78.9 4.6 0.00014 20.2 6.3 63 3-66 5-80 (510) 50 >1dkg_D Molecular chaperone DN 78.9 0.8 2.4E-05 25.2 1.2 75 1-75 6-84 (97) 51 >1wl4_A Acetyl-coenzyme A acet 77.9 1.6 4.7E-05 23.3 2.5 62 35-96 28-89 (397) 52 >2v7y_A Chaperone protein DNAK 77.6 2.4 7.2E-05 22.1 3.4 65 2-67 6-70 (73) 53 >3epq_A Putative fructokinase; 76.2 3.9 0.00011 20.8 4.1 98 2-102 4-111 (147) 54 >2c7y_A 3-ketoacyl-COA thiolas 76.1 2.6 7.6E-05 21.9 3.1 88 36-123 37-133 (404) 55 >3lma_A Stage V sporulation pr 73.9 3.6 0.00011 20.9 3.5 56 36-98 41-96 (164) 56 >2ebd_A 3-oxoacyl-[acyl-carrie 73.6 1.7 5.1E-05 23.0 1.7 53 31-92 32-84 (139) 57 >3hz6_A Xylulokinase; xylulose 72.9 6.6 0.0002 19.2 6.2 102 1-103 5-142 (241) 58 >3khy_A Propionate kinase; csg 72.7 6.7 0.0002 19.2 9.9 115 2-120 3-143 (172) 59 >3goa_A 3-ketoacyl-COA thiolas 70.6 3.4 1E-04 21.2 2.7 61 37-97 27-89 (387) 60 >2vgn_A DOM34; translation ter 68.7 7.5 0.00022 18.9 4.1 66 3-72 7-83 (141) 61 >2ebd_A 3-oxoacyl-[acyl-carrie 68.7 7.7 0.00023 18.8 4.2 114 3-117 5-136 (170) 62 >2itm_A Xylulose kinase, xylul 67.6 8.6 0.00026 18.5 5.6 65 2-67 1-76 (231) 63 >1zow_A 3-oxoacyl-[acyl-carrie 67.5 8.2 0.00024 18.7 4.1 51 33-92 36-86 (143) 64 >3fk5_A 3-oxoacyl-synthase III 67.3 5.4 0.00016 19.8 3.1 82 36-117 60-148 (338) 65 >1nu0_A Hypothetical protein Y 66.8 2.5 7.3E-05 22.0 1.3 86 2-94 4-93 (138) 66 >3bex_A Type III pantothenate 66.0 8.7 0.00026 18.5 4.0 70 1-74 1-72 (134) 67 >3cqy_A Anhydro-N-acetylmurami 65.1 9.6 0.00029 18.2 5.5 35 1-35 5-43 (190) 68 >1wdk_C 3-ketoacyl-COA thiolas 61.3 9.7 0.00029 18.2 3.5 60 37-96 30-91 (390) 69 >2f82_A HMG-COA synthase; HMGS 59.1 10 0.0003 18.0 3.3 61 36-96 51-113 (414) 70 >2d0o_A DIOL dehydratase-react 57.0 13 0.00039 17.3 5.6 84 1-92 1-93 (131) 71 >2gup_A ROK family protein; su 55.6 14 0.00042 17.1 5.8 95 2-103 5-109 (134) 72 >1u6e_A 3-oxoacyl-[acyl-carrie 55.3 7.7 0.00023 18.8 2.2 47 35-86 48-94 (155) 73 >1afw_A 3-ketoacetyl-COA thiol 53.2 4.2 0.00013 20.5 0.6 58 39-96 37-98 (393) 74 >1ub7_A 3-oxoacyl-[acyl-carrie 53.1 8.9 0.00026 18.4 2.2 48 36-92 49-96 (154) 75 >3i33_A Heat shock-related 70 52.9 15 0.00046 16.8 4.8 62 2-67 7-68 (70) 76 >1woq_A Inorganic polyphosphat 51.7 16 0.00048 16.7 5.8 96 3-100 14-126 (143) 77 >3h78_A PQS biosynthetic enzym 49.9 17 0.00051 16.5 9.2 78 35-117 53-139 (162) 78 >2ywj_A Glutamine amidotransfe 49.0 9.7 0.00029 18.2 1.9 59 45-103 15-83 (186) 79 >2p8u_A Hydroxymethylglutaryl- 45.1 12 0.00035 17.6 1.8 69 27-95 62-133 (443) 80 >2a9v_A GMP synthase; NP_39440 44.7 19 0.00056 16.3 2.8 50 56-105 52-102 (212) 81 >3gwa_A 3-oxoacyl-(acyl-carrie 44.5 14 0.00043 17.0 2.2 50 36-90 60-109 (162) 82 >1hnj_A Beta-ketoacyl-acyl car 44.1 21 0.00063 16.0 4.8 113 3-117 5-137 (317) 83 >2nv0_A Glutamine amidotransfe 43.7 13 0.00039 17.3 1.9 60 44-103 15-87 (196) 84 >1i88_A CHS2, chalcone synthas 43.1 22 0.00065 15.9 3.8 37 38-74 89-126 (375) 85 >3d2f_A Heat shock protein hom 43.1 22 0.00065 15.9 5.1 113 1-134 1-120 (220) 86 >2ywd_A Glutamine amidotransfe 43.0 20 0.00059 16.1 2.7 63 42-104 14-90 (191) 87 >3ihp_A Ubiquitin carboxyl-ter 41.9 15 0.00045 16.9 2.0 36 66-102 14-57 (218) 88 >3dou_A Ribosomal RNA large su 41.7 6.5 0.00019 19.3 0.0 31 44-74 12-42 (191) 89 >3a5r_A Benzalacetone synthase 41.5 23 0.00068 15.7 4.1 40 37-76 98-138 (387) 90 >1u6e_A 3-oxoacyl-[acyl-carrie 40.2 20 0.00059 16.1 2.4 80 36-117 60-147 (180) 91 >2khz_A C-MYC-responsive prote 40.1 14 0.00043 17.1 1.6 61 37-97 25-111 (165) 92 >2p0u_A Stilbenecarboxylate sy 38.6 24 0.00071 15.6 2.6 37 38-74 91-128 (383) 93 >2q2r_A Glucokinase 1, putativ 38.5 7.5 0.00022 18.9 -0.0 63 3-66 31-97 (170) 94 >2i7x_A Protein CFT2; polyaden 38.0 11 0.00032 17.9 0.7 61 1-68 1-63 (143) 95 >1hqk_A 6,7-dimethyl-8-ribityl 36.5 28 0.00082 15.2 4.3 58 1-72 1-58 (154) 96 >1ej0_A FTSJ; methyltransferas 35.7 9.3 0.00028 18.3 0.1 31 44-74 9-39 (180) 97 >1zow_A 3-oxoacyl-[acyl-carrie 35.5 29 0.00085 15.1 3.5 68 28-96 41-109 (170) 98 >1ted_A PKS18; thiolase fold, 35.3 29 0.00085 15.1 4.5 36 38-73 114-150 (393) 99 >1ub7_A 3-oxoacyl-[acyl-carrie 34.8 17 0.00049 16.7 1.2 88 27-117 39-135 (168) 100 >3e1h_A PKSIIINC, putative unc 33.9 24 0.00071 15.6 1.9 29 38-66 111-139 (465) 101 >1ee0_A 2-pyrone synthase; pol 33.2 31 0.00092 14.9 3.8 34 38-71 108-141 (402) 102 >2zo4_A Metallo-beta-lactamase 33.1 31 0.00092 14.9 2.7 55 9-68 18-72 (151) 103 >2v4w_A Hydroxymethylglutaryl- 32.8 24 0.00071 15.6 1.8 45 27-71 43-88 (460) 104 >1o1y_A Conserved hypothetical 32.4 32 0.00095 14.8 3.6 51 55-105 54-110 (239) 105 >3euo_A Type III pentaketide s 32.2 32 0.00096 14.8 2.4 35 38-72 82-116 (379) 106 >1qyr_A KSGA, high level kasug 31.6 19 0.00056 16.3 1.1 55 43-108 8-62 (252) 107 >1xes_A Dihydropinosylvin synt 31.3 30 0.00088 15.0 2.1 40 38-77 90-130 (377) 108 >3h78_A PQS biosynthetic enzym 31.2 34 0.00099 14.7 4.7 80 37-117 74-160 (197) 109 >2ews_A Pantothenate kinase; P 29.6 36 0.0011 14.5 5.9 56 1-71 20-75 (120) 110 >2d3m_A Pentaketide chromone s 29.2 30 0.00089 15.0 1.8 34 38-71 89-123 (379) 111 >1mzj_A Beta-ketoacylsynthase 28.2 38 0.0011 14.3 4.8 40 35-74 58-98 (339) 112 >1yuw_A Heat shock cognate 71 27.3 39 0.0012 14.2 4.0 63 1-67 6-68 (70) 113 >1q7r_A Predicted amidotransfe 24.7 36 0.0011 14.5 1.5 63 42-104 35-110 (219) 114 >1rvv_A Riboflavin synthase; t 24.6 44 0.0013 13.9 4.2 58 1-72 1-58 (154) 115 >2nyu_A Putative ribosomal RNA 23.5 20 0.00061 16.1 0.1 31 44-74 9-39 (196) 116 >3eeq_A Putative cobalamin bio 23.4 46 0.0014 13.8 3.8 55 38-104 13-67 (127) 117 >2p4z_A Metal-dependent hydrol 23.0 47 0.0014 13.7 2.5 58 1-68 13-78 (284) 118 >3l83_A Glutamine amido transf 22.9 41 0.0012 14.1 1.6 50 55-105 45-99 (250) 119 >2plw_A Ribosomal RNA methyltr 22.4 22 0.00064 15.9 0.0 29 45-73 10-38 (201) 120 >1vco_A CTP synthetase; tetram 22.3 48 0.0014 13.6 3.0 47 56-104 73-120 (270) 121 >3i33_A Heat shock-related 70 21.9 49 0.0015 13.6 2.4 22 1-22 23-44 (230) 122 >2w6k_A COBE; biosynthetic pro 21.9 48 0.0014 13.6 1.7 60 37-103 23-82 (145) 123 >1s2d_A Purine trans deoxyribo 21.4 49 0.0015 13.6 1.7 22 76-97 96-117 (167) 124 >2j01_S 50S ribosomal protein 21.2 46 0.0014 13.8 1.5 70 3-73 25-96 (112) 125 >3eld_A Methyltransferase; fla 20.9 26 0.00076 15.4 0.2 15 59-73 31-45 (203) 126 >3htv_A D-allose kinase, allok 20.6 52 0.0016 13.4 5.5 98 2-104 8-123 (156) 127 >2i2c_A Probable inorganic pol 20.5 30 0.00088 15.0 0.4 59 33-97 8-69 (93) 128 >3gcz_A Polyprotein; flaviviru 20.4 23 0.00068 15.7 -0.2 48 44-101 8-56 (174) 129 >3ehd_A Uncharacterized conser 20.3 53 0.0016 13.4 2.1 22 76-97 84-105 (162) 130 >1f8y_A Nucleoside 2-deoxyribo 20.2 49 0.0014 13.6 1.5 23 76-98 93-115 (157) No 1 >>2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A (A:1-93,A:190-231) Probab=99.94 E-value=5.1e-27 Score=195.33 Aligned_cols=126 Identities=28% Similarity=0.494 Sum_probs=101.4 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 92788621680127899977981399999984226899989999999997609998786654303785432024668999 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAV 80 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~ 80 (206) |++|+||||++.+++|+++++ +++.+. +...++|++.|+|+++++|++++++++|||.|+|+.|||||||+|||+++ T Consensus 1 M~iLaIDTS~~~~~vAl~~d~--~il~~~-~~~~~~hse~L~~~I~~lL~~a~i~~~dId~Iavs~GPGSFTGlRVgla~ 77 (135) T 2gel_A 1 MRILAIDTATEACSVALWNNG--TINAHF-ELCPREHTQRILPMVQEILAASGASLNEIDALAFGRGPGSFTGVRIGIGI 77 (135) T ss_dssp CEEEEEECSSSEEEEEEEETT--EEEEEE-EECCSCCHHHHHHHHHHHHHHTTCCGGGCSEEEEECCSSCHHHHHHHHHH T ss_pred CCEEEEECCCCCEEEEEEECC--EEEEEE-EECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCCCHHHHHHHHH T ss_conf 989999927727199999999--999999-96548999999999999985500221230443000356642337788999 Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECC----CCCEEEEEE Q ss_conf 9999973268711038389999875214678659998508----714179999 Q gi|254780429|r 81 ARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL----FHQKVCCQK 129 (206) Q Consensus 81 akgLa~~~~~pv~gvssle~la~~~~~~~~~~~i~~~idA----rr~~~y~~~ 129 (206) ||||++++++|++|||+-+.++--+.+....+....+-++ -|++|-|.. T Consensus 78 AkgLa~~~~iPligvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (135) T 2gel_A 78 AQGLALGANLPMIGVSAAEDMLPIASQKLAAGETVAVEHAEPVYLRNEVAWKK 130 (135) T ss_dssp HHHHHHTTTCCEEEECCHHHHHHHHHHHHHTTCCBCGGGCCCCCC-------- T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCC T ss_conf 99999863898764059999999999999859998814176242585200357 No 2 >>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* (A:1-125,A:287-326) Probab=99.93 E-value=3.7e-26 Score=189.74 Aligned_cols=106 Identities=28% Similarity=0.337 Sum_probs=93.8 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEE------------ECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC Q ss_conf 9278862168012789997798139999998------------4226899989999999997609998786654303785 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFK------------NLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~------------~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP 68 (206) |+||+||||++.+++||+++++ +++.+... ...|.|++.|+|+|+++|++++ ++++|+|+|++|| T Consensus 6 M~iLaIdTS~~~~sval~~~~~-~i~~~~~~~~~~~~~g~~~~~a~~~H~e~L~~~i~~~L~~~~--i~~id~Iavs~GP 82 (165) T 3en9_A 6 MICLGLEGTAEKTGVGIVTSDG-EVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVD--KNEIDLIAFSQGP 82 (165) T ss_dssp CEEEEEECSSSEEEEEEEETTS-CEEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSC--GGGCCEEEEEEES T ss_pred CEEEEEECCCHHHEEEEEECCC-CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCEEEEECCC T ss_conf 5699998651313679997999-299886687657989999189999999999999999997589--5358889996798 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 43202466899999999732687110383899998752146 Q gi|254780429|r 69 GSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSH 109 (206) Q Consensus 69 GSFTGlRigia~akgLa~~~~~pv~gvssle~la~~~~~~~ 109 (206) |||||||||+++||||++++++|+++|+|||+++++..... T Consensus 83 GsfTgLRVG~~~AkgLa~al~iPlv~vs~lea~a~~~~~~~ 123 (165) T 3en9_A 83 GLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLTT 123 (165) T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCEEEEEHHHHHHHHHHHHS T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHC T ss_conf 61887999999999999855998366424664200102211 No 3 >>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* (A:1-118,A:283-330) Probab=99.93 E-value=7e-26 Score=187.98 Aligned_cols=105 Identities=21% Similarity=0.395 Sum_probs=96.6 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEE------------CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC Q ss_conf 92788621680127899977981399999984------------226899989999999997609998786654303785 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKN------------LGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~------------~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP 68 (206) |+||+||||++.+|+||+++ +++++....+ ..|.|++.|+++|+++|+++|++++|||.|+|+.|| T Consensus 1 M~ILgIeTS~~~~svalv~d--g~il~~~~~~~~~~~~g~~~~~~~~~Hs~~l~~~i~~~L~~agi~~~did~Iavt~GP 78 (166) T 2ivn_A 1 MLALGIEGTAHTLGIGIVSE--DKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQGP 78 (166) T ss_dssp CCEEEEECSSSEEEEEEECS--SCEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEEES T ss_pred CEEEEEECCCCCEEEEEEEC--CEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC T ss_conf 91999985661308999989--9999998886444779838179999999999999999999739984314225675057 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 432024668999999997326871103838999987521 Q gi|254780429|r 69 GSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLD 107 (206) Q Consensus 69 GSFTGlRigia~akgLa~~~~~pv~gvssle~la~~~~~ 107 (206) |||||+|+|+++||+|++++++|+++|+|++++|.++.. T Consensus 79 Gs~tgLRvg~~~Ak~La~~~~iPlv~V~hl~aha~sa~~ 117 (166) T 2ivn_A 79 GLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITKM 117 (166) T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHGGGG T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH T ss_conf 643127999999999886426552020269999985551 No 4 >>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} (A:1-126,A:288-334) Probab=99.91 E-value=1.4e-24 Score=179.45 Aligned_cols=106 Identities=28% Similarity=0.375 Sum_probs=95.8 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEE------------CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC Q ss_conf 92788621680127899977981399999984------------226899989999999997609998786654303785 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKN------------LGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~------------~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP 68 (206) |+||+||||++.+|+||++++ ++++....+ ..|.|++.|.++|+++|+++|++++|||+|+++.|| T Consensus 6 M~ILgIeTS~~~~svAl~~dg--~il~~~~~e~~~~~~g~~~~~a~~~H~~~l~~~i~~~L~~agi~~~diD~Vavs~GP 83 (173) T 3eno_A 6 MIVLGLEGTAHTISCGIIDES--RILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFSMGP 83 (173) T ss_dssp CEEEEEECSSSEEEEEEEESS--CCCEEEEEECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSS T ss_pred CEEEEEECCCCCEEEEEEECC--EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC T ss_conf 579999756431189999899--898999997227879867589999999999999999999759864120057740335 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC Q ss_conf 4320246689999999973268711038389999875214 Q gi|254780429|r 69 GSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDS 108 (206) Q Consensus 69 GSFTGlRigia~akgLa~~~~~pv~gvssle~la~~~~~~ 108 (206) |+|||+|+|++++|+|++++++|+++|++++++|.+.... T Consensus 84 G~~t~Lrvg~~~ak~la~~~~~Plv~V~hl~aHa~s~~~~ 123 (173) T 3eno_A 84 GLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEIGRRV 123 (173) T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC T ss_conf 6554504677898888752253420323499998875440 No 5 >>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} (A:1-104,A:174-218) Probab=99.91 E-value=1e-24 Score=180.44 Aligned_cols=98 Identities=28% Similarity=0.312 Sum_probs=88.1 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 92788621680127899977981399999984226899989999999997609998786654303785432024668999 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAV 80 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~ 80 (206) |+||+||||++. ++|+++++ .+.+..+..+|+|++.|+|+|+++|++++++++|||+|+|++|||||||||||+++ T Consensus 13 ~~ILaIDTS~~~-sVAi~~~~---~il~~~~~~~r~hse~L~p~Ie~lL~~a~l~~~dId~Iavs~GPGSFTGLRIGls~ 88 (149) T 2a6a_A 13 XNVLALDTSQRI-RIGLRKGE---DLFEISYTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGIGPGGLTGLRVGIAT 88 (149) T ss_dssp CEEEEEECSSSE-EEEEEETT---EEEEEEEESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEECCSSCHHHHHHHHHH T ss_pred CEEEEEECCCCC-EEEEEECC---EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCHHHHHHHHH T ss_conf 603207616437-79999899---99999702767999999999999999849997980003661588752106789999 Q ss_pred HHHHHHHCCCCCCCCCHHHHHH Q ss_conf 9999973268711038389999 Q gi|254780429|r 81 ARGISLVLKQPALGVGNLEVLA 102 (206) Q Consensus 81 akgLa~~~~~pv~gvssle~la 102 (206) ||||++++++|++|||--..+. T Consensus 89 AKgLa~~~~iPligVs~~~~~~ 110 (149) T 2a6a_A 89 VVGLVSPYDIPVAPLNISPAVL 110 (149) T ss_dssp HHHHHGGGTCCEEEECCCHHHH T ss_pred HHHHHHHCCCCCCCCCCCHHHH T ss_conf 9889863688601467499999 No 6 >>2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A (A:94-189) Probab=98.76 E-value=3.2e-08 Score=73.30 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=64.5 Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEECC----CCCCCCCCCCHHHHHHHHCC--CCEEEECCCHHHCCCC Q ss_conf 38999987521467865999850871417999996178----31145110699999884227--7759982713314222 Q gi|254780429|r 97 NLEVLARAHLDSHVGRPIMVLVSLFHQKVCCQKFSLDG----VSCSDPVLLNYEQTRSEVDN--FEGEIVGSGLSAIRGI 170 (206) Q Consensus 97 sle~la~~~~~~~~~~~i~~~idArr~~~y~~~~~~~g----~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~ 170 (206) ||++||.+++.......+++++||||+|||++.|+.++ ..+.++.+++.+++.+.+.. .+..++|+|+..+.+. T Consensus 1 TL~alA~~~~~~~~~~~v~~~iDAR~~eVY~a~Y~~~~~g~~~~~~~~~v~~~~~l~~~l~~~~~~~~~vG~g~~~y~e~ 80 (96) T 2gel_A 1 TLATMAQGAWRKTGATRVLAAIDARMGEVYWAEYQRDAQGVWQGEETEAVLKPERVGERLKQLSGEWATVGTGWSAWPDL 80 (96) T ss_dssp HHHHHHHHHHHHHCCSEEEEEEEETTTEEEEEEEEECTTSCEECGGGCEEECHHHHHHHHTTCCSCEEEESTHHHHSTHH T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCEEECCHHHHCCHHHHHHHHHHHCCCEEEECCHHHHHHHH T ss_conf 79999998776328664315676478848999998579985132240210899999999864047627854488889999 Q ss_pred CC Q ss_conf 36 Q gi|254780429|r 171 EN 172 (206) Q Consensus 171 ~~ 172 (206) .. T Consensus 81 l~ 82 (96) T 2gel_A 81 AK 82 (96) T ss_dssp HH T ss_pred HH T ss_conf 87 No 7 >>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} (A:1-172,A:333-381) Probab=96.56 E-value=0.024 Score=35.13 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=63.4 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC-- Q ss_conf 92788621680127899977981399999984226----------899989999999997609998786654303785-- Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR----------GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP-- 68 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r----------~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP-- 68 (206) |+||+|+--+..+-+|+++++ +.++........ .|-+.=...|.+.|++.|+++.++|+|+.--|- T Consensus 2 ~kILvINPGSTSTKIAvfe~e--~~v~~~~i~H~~eEL~~f~~i~dQ~~~R~~~I~~~L~e~gi~~~~ldAVVgRGGll~ 79 (221) T 1saz_A 2 FRILTINPGSTSTKLSIFEDE--RXVKXQNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFSAFVSRGGLLD 79 (221) T ss_dssp CEEEEEEECSSEEEEEEEETT--EEEEEEEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEEEEECCSCS T ss_pred CEEEEECCCCHHHEEEEEECC--CCEEECEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC T ss_conf 749998578175623789388--612344214321010444530105889999999999876998351477998089876 Q ss_pred ----CCC-----------HHHH------HHHHHHHHHHHHCCCCCCCCC Q ss_conf ----432-----------0246------689999999973268711038 Q gi|254780429|r 69 ----GSF-----------TGVR------VSIAVARGISLVLKQPALGVG 96 (206) Q Consensus 69 ----GSF-----------TGlR------igia~akgLa~~~~~pv~gvs 96 (206) |-| .|.. .|.-.|..||...|+|-+-|+ T Consensus 80 Pi~gGtY~Vne~Ml~dL~~~~~g~HaSNLGa~iA~~lA~~~gipAfIvD 128 (221) T 1saz_A 80 PIPGGVYLVDGLXIKTLKSGKNGEHASNLGAIIAHRFSSETGVPAYVVD 128 (221) T ss_dssp CBCSSEEECCHHHHHHHHHTTTCCCTTHHHHHHHHHHHHHHCCCEEEES T ss_pred CCCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEC T ss_conf 5069718767999999874678777014899999998578999758868 No 8 >>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} (A:) Probab=96.24 E-value=0.033 Score=34.17 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=76.6 Q ss_pred CEEEEECCCHHHEEEEEECCCCEE--EEEEE-EECCHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHH Q ss_conf 278862168012789997798139--99999-842268---999899999999976099987866543037854320246 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRI--LGSYF-KNLGRG---HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVR 75 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~--~~~~~-~~~~r~---hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlR 75 (206) .||+||-|+..+.+|+++.+.++. +..-. ...+.. ....|.-.+.+++++.+.+.--|..+.++..+.+...+- T Consensus 2 rvLgiDpg~~~tG~av~~~~~~~~~~i~~g~i~~~~~~~~~R~~~i~~~l~~~l~~~~p~~v~iE~~~~~~~~~s~~~l~ 81 (158) T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLG 81 (158) T ss_dssp EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHH T ss_pred EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHH T ss_conf 89998457784689999966997899995348459877799999999999999863598669998412215735788899 Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHH Q ss_conf 68999999997326871103838999 Q gi|254780429|r 76 VSIAVARGISLVLKQPALGVGNLEVL 101 (206) Q Consensus 76 igia~akgLa~~~~~pv~gvssle~l 101 (206) -...++.+.+...++|+.-|+-.+.- T Consensus 82 ~~~G~i~~~~~~~~ipi~~v~P~~vK 107 (158) T 1hjr_A 82 QARGVAIVAAVNQELPVFEYAARQVK 107 (158) T ss_dssp HHHHHHHHHHHTTTCCEEEEEHHHHH T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHH T ss_conf 99999999999759738997689988 No 9 >>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} (A:1-95,A:239-270) Probab=96.01 E-value=0.01 Score=37.53 Aligned_cols=96 Identities=15% Similarity=0.205 Sum_probs=73.3 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCHH---HH- Q ss_conf 927886216801278999779813999999842268999899999999976099987866543037-8543202---46- Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSFTG---VR- 75 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSFTG---lR- 75 (206) |.+|+||--|..+-++|++.+ ++++.......+ ...+.+...++++|++++.++.+|.+|.++. |++..-. -+ T Consensus 3 ~y~LGIDiGtTsvKavl~D~d-G~iia~~~~~t~-~~~~~i~~~i~~~L~~~~~~~~~I~gIgvtg~g~~~v~~d~~g~~ 80 (127) T 1hux_A 3 IYTLGIDVGSTASKCIILKDG-KEIVAKSLVAVG-TGTSGPARSISEVLENAHMKKEDMAFTLATGYGRNSLEGIADKQM 80 (127) T ss_dssp CEEEEEEECSSEEEEEEEETT-TEEEEEEEEECC-SSCCHHHHHHHHHHHHHTCCGGGCSEEEEESTTTTTTTTTCSEEE T ss_pred EEEEEECCCCCCEEEEEECCC-CEEEEEEEECCC-CCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH T ss_conf 389853147741137998353-023225662269-986338999999998625886355578513536556666644322 Q ss_pred -HHHHHHHHHHHHCCCCCCCCCHH Q ss_conf -68999999997326871103838 Q gi|254780429|r 76 -VSIAVARGISLVLKQPALGVGNL 98 (206) Q Consensus 76 -igia~akgLa~~~~~pv~gvssl 98 (206) +--.-.++..+...-|+..++-- T Consensus 81 ~~~w~d~Rga~~~~~~~~~~~~~~ 104 (127) T 1hux_A 81 SELSCHAMGASFIWPSPLAQYNGA 104 (127) T ss_dssp CHHHHHHHHHHHHCTCGGGGGHHH T ss_pred HEEECCCCCCEEECCCCHHHHHHH T ss_conf 202211044304557812765116 No 10 >>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} (X:1-92,X:240-268) Probab=95.51 E-value=0.028 Score=34.63 Aligned_cols=87 Identities=14% Similarity=0.239 Sum_probs=59.7 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEE-EECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCHHHHHHHH Q ss_conf 27886216801278999779813999999-842268999899999999976099987866543037-8543202466899 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYF-KNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSFTGVRVSIA 79 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~-~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSFTGlRigia 79 (206) |+|+||--+.++.+++++++ +++.... .+..++-+..+...+..+++..++++++|+.++++. =|. +.-+ T Consensus 1 MLLaIDIGNTniv~Glfdg~--~l~~~~Ri~T~~~~T~DE~~~~l~~ll~~~~i~~~~I~~iiISSVVP~------lt~~ 72 (121) T 2h3g_X 1 MIFVLDVGNTNAVLGVFEEG--ELRQHWRMETDRHKTEDEYGMLVKQLLEHEGLSFEDVKGIIVSSVVPP------IMFA 72 (121) T ss_dssp CEEEEEECSSEEEEEEEETT--EEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCHH------HHHH T ss_pred CEEEEEECCCCEEEEEEECC--EEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHH------HHHH T ss_conf 98999987550099999899--999999983587677789999999999864887543224786310487------9999 Q ss_pred HHHHHHHHCCCCCCCCC Q ss_conf 99999973268711038 Q gi|254780429|r 80 VARGISLVLKQPALGVG 96 (206) Q Consensus 80 ~akgLa~~~~~pv~gvs 96 (206) +.+.+-.-++++.+-|+ T Consensus 73 l~~a~k~~f~~~PlvV~ 89 (121) T 2h3g_X 73 LERMCEKYFKIKPLVVG 89 (121) T ss_dssp HHHHHHHHTCCCCEECS T ss_pred HHHHHHHHCCCCEEEEC T ss_conf 99999983687529963 No 11 >>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima} (A:1-164,A:386-403) Probab=94.70 E-value=0.33 Score=27.73 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=65.1 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEE----------------------CCHHHHHHHHHHHHHHHHHHCC---- Q ss_conf 92788621680127899977981399999984----------------------2268999899999999976099---- Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKN----------------------LGRGHAEHLMPAIDYALKDSRL---- 54 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~----------------------~~r~hs~~L~~~i~~lL~~~~~---- 54 (206) |+||+|++-+..+-+||++.+..+.+++-... ....|.+.+-.+++.+ .+.++ T Consensus 1 MkILviN~GSSSlK~alf~~~~~~~l~~g~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~il~~L-~~~~~~~~~ 79 (182) T 2iir_A 1 MRVLVINSGSSSIKYQLIEMEGEKVLCKGIAERIGIEGSRLVHRVGDEKHVIERELPDHEEALKLILNTL-VDEKLGVIK 79 (182) T ss_dssp CEEEEEEEETTEEEEEEEETTTTEEEEEEEEECTTSTTCEEEEEETTEEEEEECCCCSHHHHHHHHHHHH-HCTTTCSCS T ss_pred CCEEEECCCHHHHEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCC T ss_conf 9199986772736328896799847888889884599863899808830354036799999999999999-853567447 Q ss_pred CHHHHHHHHCCCCCCC--CHH-HHHHHHHHHHHHHHCCCCCCCCCHHHHH Q ss_conf 9878665430378543--202-4668999999997326871103838999 Q gi|254780429|r 55 EVSQVDRVVTALGPGS--FTG-VRVSIAVARGISLVLKQPALGVGNLEVL 101 (206) Q Consensus 55 ~~~~id~iav~~GPGS--FTG-lRigia~akgLa~~~~~pv~gvssle~l 101 (206) ++++|++|+-=.+-|. |+| .+|.-.+...|-. ..|+.+.+..-.+ T Consensus 80 ~~~~i~avghRvVhGG~~~~~~~~I~~~vl~~L~~--l~~lAPlHnP~~l 127 (182) T 2iir_A 80 DLKEIDAVGHRVVHGGERFKESVLVDEEVLKAIEE--VSPLAPLHNPANL 127 (182) T ss_dssp CSTTCCEEEEEESCCTTTCSSCEECCHHHHHHHHH--HGGGSTTTHHHHH T ss_pred CHHHHEEEEEECCCCCCCCCCCEEECHHHHHHHHH--HCCCCCCCCHHHH T ss_conf 84442057542246777678878816999999997--3667765676668 No 12 >>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} (A:) Probab=94.47 E-value=0.087 Score=31.46 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=65.1 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC---CCCHH-HHH Q ss_conf 92788621680127899977981399999984226899989999999997609998786654303785---43202-466 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP---GSFTG-VRV 76 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP---GSFTG-lRi 76 (206) |.||+||-.+..+.+|+.+...................+.+...|.+++++. +++.|+++.+= |+-+- ... T Consensus 3 mriLgiD~G~~riG~Av~d~~~~~a~~l~~i~~~~~~~~~~~~~L~~ii~~~-----~~~~iviG~p~~~~g~~~~~~~~ 77 (150) T 1vhx_A 3 LRILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDY-----TIDKIVLGFPKNXNGTVGPRGEA 77 (150) T ss_dssp EEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTS-----EEEEEEEECCCCBTTBCCHHHHH T ss_pred CEEEEEEECCCEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH-----CCCEEEECCCCCCCCCCHHHHHH T ss_conf 4399999279989999973898843560446503456226899999999763-----43628851642347762178899 Q ss_pred HHHHHHHHHHHCCCCCC----CCCHHHHH Q ss_conf 89999999973268711----03838999 Q gi|254780429|r 77 SIAVARGISLVLKQPAL----GVGNLEVL 101 (206) Q Consensus 77 gia~akgLa~~~~~pv~----gvssle~l 101 (206) ...+++.++...++|++ -.+|.++- T Consensus 78 ~~~~~~~l~~~~~i~v~~~dE~~ss~~a~ 106 (150) T 1vhx_A 78 SQTFAKVLETTYNVPVVLWDERLTTXAAE 106 (150) T ss_dssp HHHHHHHHHHHHCSCEEEECCSSCHHHHH T ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHH T ss_conf 99999973557783279841555799999 No 13 >>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, ribonuclease H fold, sugar kinase/HSP70/actin superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo sapiens} (A:1-119,A:314-347) Probab=94.04 E-value=0.45 Score=26.81 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=63.2 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH-------HHHHHHHHHHHHHHHHHCCCH-HHHHHHHCCC-CCCCCH Q ss_conf 2788621680127899977981399999984226-------899989999999997609998-7866543037-854320 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR-------GHAEHLMPAIDYALKDSRLEV-SQVDRVVTAL-GPGSFT 72 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r-------~hs~~L~~~i~~lL~~~~~~~-~~id~iav~~-GPGSFT 72 (206) .+|+||--+..+-+++++.+ ++++.+.....+. .--+.+...+.+++++++++. .++..+.++. |+..=. T Consensus 7 ~vLGIDiGgT~ir~~lvD~~-G~ii~~~~~~~~~~~~~~~e~~~~~i~~~i~~~l~~~~~~~~~~I~~igig~~G~~~~~ 85 (153) T 2ch5_A 7 IYGGVEGGGTRSEVLLVSED-GKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQED 85 (153) T ss_dssp EEEEEEECTTCEEEEEEETT-SCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTCHH T ss_pred EEEEEECCCCCEEEEEECCC-CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCC T ss_conf 89999906110288999599-99999999368896658999999999999999999749997765566566652023732 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHH Q ss_conf 24668999999997326871103838999 Q gi|254780429|r 73 GVRVSIAVARGISLVLKQPALGVGNLEVL 101 (206) Q Consensus 73 GlRigia~akgLa~~~~~pv~gvssle~l 101 (206) +-.+-....+-+....++|++=.+--.+. T Consensus 86 ~~~~~~~~i~~~~~~~~~pv~v~NDa~aa 114 (153) T 2ch5_A 86 AGRILIEELRDRFPYLSESYLITTDAAGS 114 (153) T ss_dssp HHHHHHHHHHHHCTTSBSCEEEEEHHHHH T ss_pred CCEEECCHHHHHHCCCCCEEEEECHHHHH T ss_conf 10030212444312678629992659999 No 14 >>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O (X:1-84,X:222-244) Probab=93.99 E-value=0.12 Score=30.66 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=50.5 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC Q ss_conf 78862168012789997798139999998422-------------68999899999999976099987866543037 Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206) +|+||-.|..+-++|++.+ +++++......+ ..--+.+...+.++++++++++.+|.+|.++. T Consensus 7 iLgIDiGTTs~Ka~lvd~~-G~iva~~~~~~~~~~~~~g~~eqdpe~iw~~i~~~i~~ll~~a~i~~~~I~~Igis~ 82 (107) T 3h3n_X 7 VMAIDQGTTSSRAIIFDRN-GKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITN 82 (107) T ss_dssp EEEEEECSSEEEEEEEETT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE T ss_pred EEEEECCCCCHHHHEECCC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEC T ss_conf 9999821112023157189-999999998367165899828989999999999999999998499878868999978 No 15 >>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} (A:1-96,A:187-278,A:474-509) Probab=93.87 E-value=0.076 Score=31.85 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=50.0 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC------------------------HHHHHHHHHHHHHHHHHHCCCHHH Q ss_conf 78862168012789997798139999998422------------------------689998999999999760999878 Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG------------------------RGHAEHLMPAIDYALKDSRLEVSQ 58 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~------------------------r~hs~~L~~~i~~lL~~~~~~~~~ 58 (206) +|+||-.|..+-+++++.+.+++++....+.+ ..-=+.+...++++++++++++.+ T Consensus 7 ~lgiD~GTts~ka~l~d~~~G~iia~~~~~~~~~~~~~~~~~~~~~p~~g~~Eqdp~~~w~~~~~~i~~~~~~~~i~~~~ 86 (224) T 3jvp_A 7 TIGVDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKESGVDADD 86 (224) T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC---CCSC T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 99997035452889998899909999998602443211378888678988167789999999999999999984989888 Q ss_pred HHHHHCCC Q ss_conf 66543037 Q gi|254780429|r 59 VDRVVTAL 66 (206) Q Consensus 59 id~iav~~ 66 (206) |.+|.++- T Consensus 87 I~aIg~s~ 94 (224) T 3jvp_A 87 VIGIGVDF 94 (224) T ss_dssp EEEEEEEE T ss_pred EEEEEEEC T ss_conf 48999846 No 16 >>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, structural genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum atcc 12472} (A:1-121,A:280-305) Probab=93.63 E-value=0.24 Score=28.65 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=54.4 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC-CCCC Q ss_conf 78862168012789997798139999998422------689998999999999760999878665430378-5432 Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG-PGSF 71 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G-PGSF 71 (206) +|+||--+..+.+++++.+ ++++.......+ -...+.+...+++++++.+++.+++..+.++.| ||.- T Consensus 13 ~LGIDiGgT~ik~~l~D~~-G~ii~~~~~~~~~~~~~~e~~~~~i~~~i~~ll~~~~i~~~~i~~~gvgi~~~g~~ 87 (147) T 1zc6_A 13 LIGVDGGGTGTRIRLHASD-GTPLAXAEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGLSGVH 87 (147) T ss_dssp EEEEEECSSCEEEEEEETT-CCEEEEEEESCCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEESCCC T ss_pred EEEEECCCCEEEEEEECCC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC T ss_conf 9999928221899999899-98999999569985669999999999999999998499965554223202568765 No 17 >>3djc_A Type III pantothenate kinase; structural genomics, putative transferase, PSI-2, protein structure initiative; 2.40A {Legionella pneumophila subsp} (A:1-123,A:243-266) Probab=93.34 E-value=0.22 Score=28.84 Aligned_cols=74 Identities=9% Similarity=0.100 Sum_probs=59.3 Q ss_pred CC-EEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH Q ss_conf 92-78862168012789997798139999998422689998999999999760999878665430378543202466 Q gi|254780429|r 1 MI-VLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRV 76 (206) Q Consensus 1 M~-iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRi 76 (206) |+ +|+||-=+..+..|+++++ +++........+.-...+...+.+++++.+.++.++..++++.=-...|+.-. T Consensus 1 M~m~L~IDIGNT~iK~al~~~~--~~~~~~~~~t~~~~~~e~~~~l~~l~~~~~~~~~~v~~v~i~sVvp~~~~~~~ 75 (147) T 3djc_A 1 MSLILCIDVGNSHIYGGVFDGD--EIKLRFRHTSKVSTSDELGIFLKSVLRENNCSPETIRKIAICSVVPQVDYSLR 75 (147) T ss_dssp --CEEEEEECSSEEEEEEEETT--EEEEEEEEECSCCCHHHHHHHHHHHHHTTTCCGGGCCEEEEEESCHHHHHHHH T ss_pred CCEEEEEEECCCCEEEEEEECC--EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHH T ss_conf 9679999966761089999999--99999984688888789999999999975998788678999980657899999 No 18 >>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* (A:1-85,A:223-246) Probab=93.19 E-value=0.29 Score=28.02 Aligned_cols=63 Identities=10% Similarity=0.260 Sum_probs=48.6 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC Q ss_conf 278862168012789997798139999998422-------------6899989999999997609998786654303 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTA 65 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~ 65 (206) .+|+||--|..+-++|++.+ +++++......+ ..--+.+...++++++++++++++|.+|+++ T Consensus 7 yilgIDiGTTsiKa~l~D~~-G~~ia~~~~~~~~~~~~~g~~Eqdp~~~w~~i~~~i~~ll~~~~i~~~~I~aIgis 82 (109) T 3g25_A 7 YILSIDQGTTSSRAILFNQK-GEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVXTEVINENDVRADQIAGIGIT 82 (109) T ss_dssp EEEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEE T ss_pred EEEEEECCCCCCHHHEECCC-CCEEEEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEE T ss_conf 78999840204011068499-98999999706712489980788999999999999999998759997677899997 No 19 >>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} (A:1-74,A:255-284,A:436-494) Probab=93.03 E-value=0.15 Score=29.98 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=70.3 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC-CCHHHHHH- Q ss_conf 788621680127899977981399999984226---8999899999999976099987866543037854-32024668- Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPG-SFTGVRVS- 77 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPG-SFTGlRig- 77 (206) +|+||.-|..+.++|++.+.++++.....+.+- ...+.+...+.+++++. ++..+|.+|.++. +| -==++|-. T Consensus 7 ~lgID~Gtt~~k~~l~d~~~g~ii~~~~~p~~g~~e~d~~~~~~~~~~~~~~~-~~~~~I~aIgis~-~~gv~~~~~~~l 84 (163) T 3i8b_A 7 VAGVDTSTQSCKVRVTDAETGELVRFGQAKHPNGTSVDPSYWWSAFQEAAEQA-GGLDDVSALAVGG-QQPAIAGKNVEG 84 (163) T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEECCSSSEECTHHHHHHHHHHHHHT-TCSTTEEEEEEEE-CSTTTTTTTSTT T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEECHHHHHHHHHHHHHHH-CCCCCCEEEEEEC-CCHHHHHCCCCC T ss_conf 99997255034889998999969999960088981089999999999999972-7710446999946-879997538887 Q ss_pred ----------------------HHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf ----------------------9999999973268711038389999 Q gi|254780429|r 78 ----------------------IAVARGISLVLKQPALGVGNLEVLA 102 (206) Q Consensus 78 ----------------------ia~akgLa~~~~~pv~gvssle~la 102 (206) =-..|-++-.+++|+.-+..-|+-+ T Consensus 85 ~~~~~~g~~i~~i~~~GGgsrs~~~~qi~adv~g~~v~~~~~~E~~a 131 (163) T 3i8b_A 85 GCLLAPGGGDNAXASLGLGXKSEAIRTLAPSILGXDVTRPATDEYVA 131 (163) T ss_dssp CCEECCCEEHHHHHHHHTTCGCHHHHHHHHHHHTSCEEEECCCCHHH T ss_pred CCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCHHH T ss_conf 76424655655665403455088999999998799469678885899 No 20 >>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583} (A:1-131,A:308-326) Probab=92.43 E-value=0.62 Score=25.92 Aligned_cols=101 Identities=13% Similarity=0.063 Sum_probs=73.6 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CC------- Q ss_conf 2788621680127899977981399999984226-----8999899999999976099987866543037-85------- Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR-----GHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GP------- 68 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r-----~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GP------- 68 (206) .+++||-.+..+.++|++.+ ++++.+...+.+. .--+.+...+++++++++.+..++..|.++. || T Consensus 7 ~~iGIdig~t~i~~~l~Dl~-g~ii~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gIgia~pg~vd~~~~~ 85 (150) T 2qm1_A 7 KIIGIDLGGTTIKFAILTTD-GVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNXKKEDFVGIGXGTPGSVDIEKGT 85 (150) T ss_dssp EEEEEEECSSEEEEEEEETT-CCEEEEEEEECCCTTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSEEETTTTE T ss_pred EEEEEEECCCEEEEEEECCC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCC T ss_conf 69999987233899999399-98999999847988898999999999999999972455445201001223211223333 Q ss_pred CCCHHH---HHHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 432024---66899999999732687110383899998 Q gi|254780429|r 69 GSFTGV---RVSIAVARGISLVLKQPALGVGNLEVLAR 103 (206) Q Consensus 69 GSFTGl---Rigia~akgLa~~~~~pv~gvssle~la~ 103 (206) -.++.. .-+....+-|+...++|++=.+.-.+.+. T Consensus 86 i~~~~~~~~w~~~~l~~~l~~~~~~Pv~i~ND~na~al 123 (150) T 2qm1_A 86 VVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAAL 123 (150) T ss_dssp EECBGGGTBCSCBCHHHHHHHHHCSCEEEEEHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHH T ss_conf 34543222233451788997721530686325433344 No 21 >>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} (A:1-164,A:384-408) Probab=92.17 E-value=0.88 Score=24.93 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=64.3 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEE-----------------------CCHHHHHHHHHHHHHHHHHHCC--- Q ss_conf 92788621680127899977981399999984-----------------------2268999899999999976099--- Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKN-----------------------LGRGHAEHLMPAIDYALKDSRL--- 54 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~-----------------------~~r~hs~~L~~~i~~lL~~~~~--- 54 (206) |+||.|++-+..+-++|++-...+.+++-... ....|...+-..++ .|.+.++ T Consensus 1 MkILvIN~GSSSlKfalfd~~~~~~l~~g~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~il~-~L~~~~~~~~ 79 (189) T 1g99_A 1 MKVLVINAGSSSLKYQLIDMTNESALAVGLCERIGIDNSIITQKKFDGKKLEKLTDLPTHKDALEEVVK-ALTDDEFGVI 79 (189) T ss_dssp CEEEEEEECSSCEEEEEEETTTTEEEEEEEEESTTSSSCEEEEEETTSCEEEEECCCCSHHHHHHHHHH-HHTCTTTCSC T ss_pred CEEEEECCCHHHHEEEEEECCCCCEEEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCHHHHHHHHHH-HHHHCCCCCC T ss_conf 959998688174630789779985788867764168876168873787045422675489999999999-9985276645 Q ss_pred -CHHHHHHHHCCCCCC--CCHH-HHHHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf -987866543037854--3202-46689999999973268711038389999 Q gi|254780429|r 55 -EVSQVDRVVTALGPG--SFTG-VRVSIAVARGISLVLKQPALGVGNLEVLA 102 (206) Q Consensus 55 -~~~~id~iav~~GPG--SFTG-lRigia~akgLa~~~~~pv~gvssle~la 102 (206) ++.+|++|+-=++-| .|+| .+|.=.+...|-. ..|+.+.+..-.++ T Consensus 80 ~~~~~I~aVgHRvVHGG~~f~~~~~I~~~vl~~L~~--l~~lAPLHnp~~L~ 129 (189) T 1g99_A 80 KDMGEINAVGHRVVHGGEKFTTSALYDEGVEKAIKD--CFELAPLHNPPNMM 129 (189) T ss_dssp SSGGGCCEEEEEESCCTTTCCSCEECCHHHHHHHHH--TGGGSTTTHHHHHH T ss_pred CCCCCEEEEEECCCCCCCCCCCCEECHHHHHHHHHH--CCCCCCCCCHHHHH T ss_conf 770224799855644687437737713999999996--33568666877899 No 22 >>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1} (O:1-238) Probab=91.32 E-value=0.8 Score=25.22 Aligned_cols=101 Identities=19% Similarity=0.156 Sum_probs=63.7 Q ss_pred CC--EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC Q ss_conf 92--78862168012789997798139999998422-------------6899989999999997609998786654303 Q gi|254780429|r 1 MI--VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTA 65 (206) Q Consensus 1 M~--iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~ 65 (206) |. +|+||..|..+-++|++.+ +++++......+ ...-+.+...+.+++++.+.+..+|.+|.++ T Consensus 1 M~~~~lgiD~GTts~ka~l~d~~-g~~v~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~i~aI~~s 79 (238) T 2zf5_O 1 MEKFVLSLDEGTTSARAIIFDRE-SNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVT 79 (238) T ss_dssp CCCEEEEEEECSSEEEEEEECTT-CCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE T ss_pred CCCEEEEEEECCCCEEEEEEECC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEE T ss_conf 99489999810304232379588-99999999977721589982899999999999999999999759995227899995 Q ss_pred -CCCCCC----HH-----------HH-------HHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf -785432----02-----------46-------689999999973268711038389999 Q gi|254780429|r 66 -LGPGSF----TG-----------VR-------VSIAVARGISLVLKQPALGVGNLEVLA 102 (206) Q Consensus 66 -~GPGSF----TG-----------lR-------igia~akgLa~~~~~pv~gvssle~la 102 (206) .+.|-. +| -| +.-....-+-...+.+..+..++.-++ T Consensus 80 ~~~~~~v~~d~~g~~~~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~kl~ 139 (238) T 2zf5_O 80 NQRETTLVWDKDGKPLYNAIVWQCRRTAEMVEEIKREYGTMIKEKTGLVPDAYFSASKLK 139 (238) T ss_dssp ECSSCEEEECTTCCBSSCEECTTCCTTHHHHHHHHHHHHHHHHHHHSSCCCTTSHHHHHH T ss_pred CCCCCEEEECCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHH T ss_conf 667888999899988731232155531467889876305311114478555215899999 No 23 >>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-241) Probab=90.47 E-value=1.1 Score=24.43 Aligned_cols=101 Identities=14% Similarity=0.005 Sum_probs=62.6 Q ss_pred CC-EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC- Q ss_conf 92-78862168012789997798139999998422-------------6899989999999997609998786654303- Q gi|254780429|r 1 MI-VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTA- 65 (206) Q Consensus 1 M~-iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~- 65 (206) |+ +|+||..|..+-++|++.+ ++++++...... ..--+.+...+.+++++.+.+..++-+|.++ T Consensus 1 M~~~lgiDiGTts~Ka~l~d~~-g~~i~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (241) T 2dpn_A 1 MAFLLALDQGTTSSRAILFTLE-GRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLALGITN 79 (241) T ss_dssp --CEEEEEECSSEEEEEEECTT-SCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEE T ss_pred CCEEEEEECCCCCEEEEEEECC-CCEEEEEEEECCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHCEEEEEEEC T ss_conf 9689999841113110178088-989999997467045899828999999999999999999997499842057999988 Q ss_pred CCCCCC--------------HH-HHHHHHHHH---------HHHHHCCCCCCCCCHHHHHH Q ss_conf 785432--------------02-466899999---------99973268711038389999 Q gi|254780429|r 66 LGPGSF--------------TG-VRVSIAVAR---------GISLVLKQPALGVGNLEVLA 102 (206) Q Consensus 66 ~GPGSF--------------TG-lRigia~ak---------gLa~~~~~pv~gvssle~la 102 (206) .+.|.. +- -+-+...++ -+....+.++.+..++.-+. T Consensus 80 ~~~~~v~~~~~~~~~~~~~i~w~d~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~ 140 (241) T 2dpn_A 80 QRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAKGLEPLFRERTGLLFDPYFSGTKLV 140 (241) T ss_dssp CSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHHHHTTCHHHHHHHTSCCSCTTSHHHHHH T ss_pred CCCCEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH T ss_conf 9988899987899185223322352068887898862459999998789778044499999 No 24 >>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* (A:1-266,A:476-506) Probab=90.18 E-value=1.3 Score=23.90 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=48.5 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEE-------------CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCC Q ss_conf 788621680127899977981399999984-------------226899989999999997609998786654303-785 Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKN-------------LGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTA-LGP 68 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~-------------~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~-~GP 68 (206) +|+||-.|..+-+++++.+ +++++..... .+..--+.+...+.+++++.+.+..++.+|.++ .+. T Consensus 7 vlgIDiGTtsvK~~v~d~~-g~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~i~~~~~~~~~~~~~i~aI~is~~~~ 85 (297) T 3l0q_A 7 FIGVDVGTGSARAGVFDLQ-GRXVGQASREITXFKPKADFVEQSSENIWQAVCNAVRDAVNQADINPIQVKGLGFDATCS 85 (297) T ss_dssp EEEEEECSSEEEEEEEETT-SCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECSC T ss_pred EEEEEECCCCEEEEEECCC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCEE T ss_conf 9999803545255588299-989999998566276899948999999999999999999997499879959999888446 Q ss_pred CC Q ss_conf 43 Q gi|254780429|r 69 GS 70 (206) Q Consensus 69 GS 70 (206) |. T Consensus 86 ~~ 87 (297) T 3l0q_A 86 LV 87 (297) T ss_dssp EE T ss_pred EE T ss_conf 99 No 25 >>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* (A:1-85,A:223-247) Probab=89.81 E-value=0.63 Score=25.87 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=43.1 Q ss_pred CC-EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHH--HHCCCHHHHHHHHC Q ss_conf 92-78862168012789997798139999998422-------------6899989999999997--60999878665430 Q gi|254780429|r 1 MI-VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALK--DSRLEVSQVDRVVT 64 (206) Q Consensus 1 M~-iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~--~~~~~~~~id~iav 64 (206) |. +|+||--|..+-++|++.+ +++++....+.+ ..-=+.+...++++++ +++++..+|.+|++ T Consensus 3 m~yvLgIDiGTts~Ra~l~D~~-G~iia~~~~~~~~~~~~~G~~EqDp~~~w~ai~~~i~~ll~~~~~~i~~~~I~aIgi 81 (110) T 2w40_A 3 MNVILSIDQSTQSTKVFFYDEE-LNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGI 81 (110) T ss_dssp CEEEEEEEECSSEEEEEEEETT-CCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEEEE T ss_pred CCEEEEEECCHHCCHHHEECCC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE T ss_conf 5599999731111012168399-989999997067536999838989999999999999999998760488566699998 Q ss_pred C Q ss_conf 3 Q gi|254780429|r 65 A 65 (206) Q Consensus 65 ~ 65 (206) + T Consensus 82 s 82 (110) T 2w40_A 82 T 82 (110) T ss_dssp E T ss_pred E T ss_conf 1 No 26 >>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.90A {Salmonella typhimurium} (A:1-128,A:313-327) Probab=89.76 E-value=0.29 Score=28.05 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=70.7 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCC-CHHH----- Q ss_conf 27886216801278999779813999999842268999899999999976099987866543037-8543-2024----- Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGS-FTGV----- 74 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGS-FTGl----- 74 (206) .+++||-..+.+.+++++.+ ++++.+.....+..-.+.++..+.+++++...+.+++..|+++. ||=. .+|+ T Consensus 25 ~~igvdig~t~i~~~l~d~~-G~il~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~~Igia~pG~vd~~~g~i~~~~ 103 (143) T 2ap1_A 25 MYYGFDIGGTKIALGVFDST-RRLQWEKRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGTLYAAN 103 (143) T ss_dssp EEEEEEECSSEEEEEEEETT-CCEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESSBSCCTTSCCBCTT T ss_pred EEEEEEECCCEEEEEEEECC-CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC T ss_conf 59999936466999999099-98999999979999999999999999999888639972799996785433433345531 Q ss_pred ---HHHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf ---66899999999732687110383899 Q gi|254780429|r 75 ---RVSIAVARGISLVLKQPALGVGNLEV 100 (206) Q Consensus 75 ---Rigia~akgLa~~~~~pv~gvssle~ 100 (206) --++-+.+-|...+++|++=.+---. T Consensus 104 ~~~w~~~~l~~~l~~~l~~PV~i~N~~~~ 132 (143) T 2ap1_A 104 VPAASGKPLRADLSARLDRDVRLDNDAGG 132 (143) T ss_dssp CTTTTTSCHHHHHHHHHTSCEEEEETTHH T ss_pred CCHHHCCCHHHHHHHHHCCCCCCCCCHHH T ss_conf 10110142576776653465223438599 No 27 >>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genomics consortium, SGC, transferase; 2.55A {Homo sapiens} (A:) Probab=89.50 E-value=1.3 Score=23.79 Aligned_cols=89 Identities=15% Similarity=0.035 Sum_probs=57.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHH--HHHHHC Q ss_conf 68999899999999976099987866543037854320246689999999973268711038-----38999--987521 Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG-----NLEVL--ARAHLD 107 (206) Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs-----sle~l--a~~~~~ 107 (206) ..-.+.....++++|+++|++++|||.+.++...+.+..--....++..+.....+|.+.++ .+.++ |..... T Consensus 53 ~~~~~La~~A~~~Al~daGi~~~dID~ii~g~~~~~~~~~~~a~~~~~~~g~~~~~~~~~v~~~cas~~~al~~Aa~~I~ 132 (418) T 2iik_A 53 TTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIR 132 (418) T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCCCEEEECSSSBGGGHHHHHHHHHHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHCCCHHC T ss_conf 98999999999999987498989989999997786664657999999977999777668873467635331100120001 Q ss_pred CCCCCEEEEE-ECCCCC Q ss_conf 4678659998-508714 Q gi|254780429|r 108 SHVGRPIMVL-VSLFHQ 123 (206) Q Consensus 108 ~~~~~~i~~~-idArr~ 123 (206) ....+.++++ .+.... T Consensus 133 sG~~~~vLvvg~e~~s~ 149 (418) T 2iik_A 133 NGSYDIGMACGVESMSL 149 (418) T ss_dssp TTSCSEEEEEEEEETTT T ss_pred CCCCCCEEECCEECCCC T ss_conf 33455116744000256 No 28 >>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:106-216) Probab=89.16 E-value=1 Score=24.56 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=50.1 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECCH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC Q ss_conf 788621680127899977981399999984226----899989999999997609998786654303785432 Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLGR----GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF 71 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r----~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF 71 (206) +++||-++..+.++|++.+ ++++.+.....+. .--+.+...+++++++.+....++-+|.++. ||-. T Consensus 5 ~igidig~~~i~~~l~d~~-g~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~gigi~~-~g~v 75 (111) T 1z05_A 5 FLSMRLGRGYLTIALHELG-GEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITL-PGLV 75 (111) T ss_dssp EEEEEEETTEEEEEEEETT-SCEEEEEEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEE-SSEE T ss_pred EEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-ECCC T ss_conf 9999989998999999699-979999961345798789999999999999997076656246786532-0254 No 29 >>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170} (A:1-242) Probab=88.74 E-value=1.1 Score=24.35 Aligned_cols=67 Identities=6% Similarity=-0.043 Sum_probs=50.8 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-C Q ss_conf 278862168012789997798139999998422-------------68999899999999976099987866543037-8 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-G 67 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-G 67 (206) .+|+||-.|..+-++|++.+ +++++......+ ...-+.+...+.+++++.+....+|.+|.++- + T Consensus 8 ~~lgIDiGTts~Ka~l~d~~-g~~i~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~Ig~s~~~ 86 (242) T 3ifr_A 8 QVIGLDIGTTSTIAILVRLP-DTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGICVTGXL 86 (242) T ss_dssp EEEEEEECSSEEEEEEEETT-TEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEEECS T ss_pred EEEEEECCCCCEEEEEEECC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC T ss_conf 89999772223376799688-99999999856701589980899999999999999999999639886772399997852 Q ss_pred CC Q ss_conf 54 Q gi|254780429|r 68 PG 69 (206) Q Consensus 68 PG 69 (206) .| T Consensus 87 ~~ 88 (242) T 3ifr_A 87 PA 88 (242) T ss_dssp SC T ss_pred CC T ss_conf 27 No 30 >>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} (A:1-173,A:394-415) Probab=88.63 E-value=1.8 Score=22.95 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=62.2 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEEC-------------------CHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 927886216801278999779813999999842-------------------2689998999999999760999878665 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNL-------------------GRGHAEHLMPAIDYALKDSRLEVSQVDR 61 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~-------------------~r~hs~~L~~~i~~lL~~~~~~~~~id~ 61 (206) |+||+|++-+..+-++|++.+..+.+++..... -..|.+.+..+++.+ +.+....++++ T Consensus 18 ~~ILvIN~GSSSlK~alf~~~~~~~l~~g~ie~i~~~~~~~~~~~~~~~~~~~~~~~~ai~~il~~l--~~~~~~~~i~a 95 (195) T 2e1z_A 18 PVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALKAIAFEL--EKRDLTDSVAL 95 (195) T ss_dssp CEEEEEEECSSEEEEEEEETTTCCEEEEEEEESTTSSSCEEEETTSCCEECCSCCHHHHHHHHHHHH--HTTTCGGGEEE T ss_pred CEEEEECCCCHHHEEEEEECCCCCEEEEECEEECCCCCCEEEEECCEEEECCCCCHHHHHHHHHHHH--HHCCCCCCCEE T ss_conf 4699992782626438898899878987011003898866998078026315338999999999999--84686124408 Q ss_pred HHCCCC--CCCCHH-HHHHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 430378--543202-466899999999732687110383899 Q gi|254780429|r 62 VVTALG--PGSFTG-VRVSIAVARGISLVLKQPALGVGNLEV 100 (206) Q Consensus 62 iav~~G--PGSFTG-lRigia~akgLa~~~~~pv~gvssle~ 100 (206) |+.=+| ..-|+| .||.-.+...|-. -.|+.+.+..-. T Consensus 96 VghRvVhGG~~f~~~~~I~~~v~~~L~~--l~~lAPlHnp~~ 135 (195) T 2e1z_A 96 IGHRIAHGGELFTQSVIITDEIIDNIRR--VSPLAPLHNYAN 135 (195) T ss_dssp EEEEESCCTTTCSSCEECCHHHHHHHHH--HGGGSHHHHHHH T ss_pred EEECCCCCCCCCCCCEECCHHHHHHHHH--HCCCCCCCCHHH T ss_conf 9716867888877877667899999997--046887558576 No 31 >>3eo3_A Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens} (A:1-144,A:315-333) Probab=88.45 E-value=0.6 Score=26.01 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=70.6 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CC-CCCHHH- Q ss_conf 92788621680127899977981399999984226---8999899999999976099987866543037-85-432024- Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---GHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GP-GSFTGV- 74 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GP-GSFTGl- 74 (206) +.+|+||-.+..+.+++++.+ ++++.+.....+. .--+.+..+|++++++.+.+..++..|+++. |+ ..-+|. T Consensus 20 ~~vlgIdiG~t~i~~~l~D~~-G~iia~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgis~pg~v~~~~g~i 98 (163) T 3eo3_A 20 LSALAVDLGGTNLRVAIVSMK-GEIVKKYTQFNPKTYEERINLILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREGIV 98 (163) T ss_dssp CEEEEEEECSSEEEEEEEETT-SCEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEC----------- T ss_pred EEEEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC T ss_conf 028999977111999999499-9799999968999878999999999999999862136845689841564321233100 Q ss_pred ---------HHHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf ---------66899999999732687110383899998 Q gi|254780429|r 75 ---------RVSIAVARGISLVLKQPALGVGNLEVLAR 103 (206) Q Consensus 75 ---------Rigia~akgLa~~~~~pv~gvssle~la~ 103 (206) ..++...+-|....++|++=.+.-.+.|. T Consensus 99 ~~~~~~~~~~~~~~l~~~l~~~~~~pV~i~NDa~~aal 136 (163) T 3eo3_A 99 LHSTKLIQEWNSVDLRTPLSDTLHLPVWVDNDGNCAAL 136 (163) T ss_dssp -------------CCHHHHHHHHCSCEEEECHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHH T ss_conf 13333455432331167776502786674044321238 No 32 >>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} (A:105-173) Probab=87.34 E-value=1 Score=24.51 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=43.1 Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEEC--CCCCCCCCCCCHHHHHHHHCCC Q ss_conf 3899998752146786599985087141799999617--8311451106999998842277 Q gi|254780429|r 97 NLEVLARAHLDSHVGRPIMVLVSLFHQKVCCQKFSLD--GVSCSDPVLLNYEQTRSEVDNF 155 (206) Q Consensus 97 sle~la~~~~~~~~~~~i~~~idArr~~~y~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~ 155 (206) |||.-+. ..+.++.+++.-.||+|--|++.|..+ .+++.+|.+.+.+++.+..... T Consensus 1 sfema~k---s~p~dg~vlv~rrarkgy~y~avy~k~k~ln~lkepsv~sdee~~~i~ke~ 58 (69) T 2a6a_A 1 SFEXTAK---SCPADGVVLVARRARKGYHYCAVYLKDKGLNPLKEPSVVSDEELEEITKEF 58 (69) T ss_dssp HHHHHHH---TCSSCEEEEEEEECSTTEEEEEEEEESSSCEEEEEEEEEEHHHHHHHHHHH T ss_pred HHHHHHH---HHHCCCCCCCHHHHHCCEEEEEEEECCCCCCCCCCCEECCHHHHHHHHHHC T ss_conf 7999997---500135534054652872999999649984221586556899999999744 No 33 >>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, cytoplasm, thiolase fold; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... (A:) Probab=87.28 E-value=0.95 Score=24.71 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=51.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHH--HHHHHC Q ss_conf 68999899999999976099987866543037854320246689999999973268711038-----38999--987521 Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG-----NLEVL--ARAHLD 107 (206) Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs-----sle~l--a~~~~~ 107 (206) +.-.+.....+.++|+++|+++++||.++++.-+..+.+--.+-.++.......++|..-++ ...++ |..... T Consensus 25 ~~~~~La~~a~~~Al~dagl~~~~ID~iv~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~casg~~ai~~A~~~I~ 104 (392) T 2vu1_A 25 TPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIA 104 (392) T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTSEEEEEECGGGHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH T ss_conf 99999999999999987095989929999996277665556999999977999755436642565410256899999972 Q ss_pred CCCCCEEEEE Q ss_conf 4678659998 Q gi|254780429|r 108 SHVGRPIMVL 117 (206) Q Consensus 108 ~~~~~~i~~~ 117 (206) ....+.++++ T Consensus 105 sG~~~~vLv~ 114 (392) T 2vu1_A 105 TGDASIIVAG 114 (392) T ss_dssp TTSCSCEEEE T ss_pred CCCCCEEEEE T ss_conf 6984213410 No 34 >>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} (A:) Probab=87.20 E-value=0.4 Score=27.18 Aligned_cols=85 Identities=18% Similarity=0.058 Sum_probs=51.0 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC---CCCCHHH-HH Q ss_conf 9278862168012789997798139999998422689998999999999760999878665430378---5432024-66 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG---PGSFTGV-RV 76 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G---PGSFTGl-Ri 76 (206) |.||+||--+..|.||+-+... .++.-.....+...+..+..+.+++++. +++.|+|+.. -|+.+.. +. T Consensus 1 MrilgiD~G~kriGvAi~d~~~--~~a~pl~~i~~~~~~~~~~~l~~li~~~-----~v~~iVvGlP~~~~g~~~~~~~~ 73 (98) T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGV--PLASGRGYLVRKTLEEDVEALLDFVRRE-----GLGKLVVGLPLRTDLKESAQAGK 73 (98) T ss_dssp CCEEEEEESSSEEEEEEECSCC--SSCCCEEEEECCCHHHHHHHHHHHHHHH-----TCCEEEEECCCCCCSSSCCCSST T ss_pred CCEEEEEECCCEEEEEEECCCC--CEEECEEEEECCCCHHHHHHHHHHHHHH-----CCCCEEECCCCCCCCCCCHHHHH T ss_conf 9299998089989999925999--8781678898678658999999999873-----62507816897789991889999 Q ss_pred HHHHHHHHHHHCCCCCC Q ss_conf 89999999973268711 Q gi|254780429|r 77 SIAVARGISLVLKQPAL 93 (206) Q Consensus 77 gia~akgLa~~~~~pv~ 93 (206) .-.+++-|.. .++|++ T Consensus 74 i~~f~~~l~~-~~i~v~ 89 (98) T 1iv0_A 74 VLPLVEALRA-RGVEVE 89 (98) T ss_dssp THHHHHHHHH-TTCEEE T ss_pred HHHHHHHHHH-CCCCEE T ss_conf 9999999864-799899 No 35 >>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} (A:86-211,A:358-380) Probab=86.56 E-value=1 Score=24.51 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=65.5 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECC-----HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC---HH Q ss_conf 278862168012789997798139999998422-----6899989999999997609998786654303785432---02 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLG-----RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF---TG 73 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-----r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF---TG 73 (206) .+|+||-.+....++|++.+ ++++.+...+.+ ..-.+.+...|++++++.+.+..++.+|.++. ||-. +| T Consensus 3 y~lGIdiG~t~i~~~l~d~~-G~il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gIgia~-pG~V~~~~~ 80 (149) T 2hoe_A 3 YVLGIEVTRDEIAACLIDAS-XNILAHEAHPLPSQSDREETLNVXYRIIDRAKDXXEKLGSKLSALTVAA-PGPIDTERG 80 (149) T ss_dssp EEEEEEECSSEEEEEEEETT-CCEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEE-SSCEETTTT T ss_pred CEEEEEECCCEEEEEEEECC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-CCCEECCCC T ss_conf 12578998988999999289-9899876432777789899999999999999998653178524674032-220534740 Q ss_pred HH--------HHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 46--------6899999999732687110383899998 Q gi|254780429|r 74 VR--------VSIAVARGISLVLKQPALGVGNLEVLAR 103 (206) Q Consensus 74 lR--------igia~akgLa~~~~~pv~gvssle~la~ 103 (206) .. -+....+-+...+++|++=.+.-.+.+. T Consensus 81 ~~~~~~~~~w~~~~~~~~l~~~~~~pv~v~NDa~~~al 118 (149) T 2hoe_A 81 IIIDPRNFPLSQIPLANLLKEKYGIEVWVENDADXGAV 118 (149) T ss_dssp EECCCSSCTTBTSCHHHHHHHHHCSEEEEEEHHHHHHH T ss_pred EEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCHHHHH T ss_conf 89734545646884788999874753343034058898 No 36 >>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* (A:1-105,A:275-299) Probab=86.33 E-value=1.1 Score=24.18 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=56.8 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHC-CCCCCCCHHHHH Q ss_conf 9278862168012789997798139999998422689---998999999999760999878665430-378543202466 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGH---AEHLMPAIDYALKDSRLEVSQVDRVVT-ALGPGSFTGVRV 76 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~h---s~~L~~~i~~lL~~~~~~~~~id~iav-~~GPGSFTGlRi 76 (206) |.+|+||-.+..+.+++++. +++++.+.....+..+ .+.+...+.+.+++.+.... +.+.+ ..|++...+.-+ T Consensus 2 ~~~iGIDiG~T~ira~l~D~-~G~ii~~~~~~t~~~~e~~~~~i~~~i~~~i~~~~~~~~--~~~gI~~~gi~~~~~~~l 78 (130) T 2e2o_A 2 MIIVGVDAGGTKTKAVAYDC-EGNFIGEGSSGPGNYHNVGLTRAIENIKEAVKIAAKGEA--DVVGMGVAGLDSKFDWEN 78 (130) T ss_dssp CCEEEEEECSSCEEEEEECT-TSCEEEEEEESCCCHHHHCHHHHHHHHHHHHHHHHTSCC--SEEEEEETTCCSHHHHHH T ss_pred CEEEEEEECHHHEEEEEECC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCC--CEEEEECCCCCCCCHHHH T ss_conf 09999996500279999979-998999999578997510499999999999997458987--557883245678204689 Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 899999999732687110383899 Q gi|254780429|r 77 SIAVARGISLVLKQPALGVGNLEV 100 (206) Q Consensus 77 gia~akgLa~~~~~pv~gvssle~ 100 (206) ..-+....+.|++-.+--.+ T Consensus 79 ----~~~l~~~~~~Pv~l~NDara 98 (130) T 2e2o_A 79 ----FTPLASLIAPKVIIQHDGVI 98 (130) T ss_dssp ----HHHHHTTSSSEEEEEEHHHH T ss_pred ----HHHHHHCCCCCEEEECHHHH T ss_conf ----99998535887899711789 No 37 >>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:326-467) Probab=85.96 E-value=2.5 Score=21.97 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=59.6 Q ss_pred CEEEEECCCH-HHEEEEEECCCCEEEEEEEEEC--CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHH-HHHH Q ss_conf 2788621680-1278999779813999999842--2689998999999999760999878665430378543202-4668 Q gi|254780429|r 2 IVLALDTTGA-DCSVAIYDSHAGRILGSYFKNL--GRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTG-VRVS 77 (206) Q Consensus 2 ~iLaIdTs~~-~~sval~~~~~~~~~~~~~~~~--~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTG-lRig 77 (206) +|||||--+. .+.+|+.+. .++++....... .++-.+.....+.+++++.+ ++.|++ |.|+.+- .+.. T Consensus 5 rilaiD~G~k~riG~A~~d~-~g~i~~~~~~~~~~~~~~~~~~~~~l~~li~~~~-----~~~iVi--G~g~~~~~~~~~ 76 (142) T 3bzc_A 5 ATLGLDPGLRTGVKVAVVDA-TGKLLDTATVYPHAPKNQWDQTLAVLAALCAKHQ-----VELIAI--GNGTASRETDKL 76 (142) T ss_dssp CEEEEECCSSSCEEEEEECT-TSCEEEEEEECCSGGGCCHHHHHHHHHHHHHHHT-----CCEEEE--ESSTTHHHHHHH T ss_pred EEEEECCCCCCCEEEEEECC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC-----CCEEEE--CCCCHHHHHHHH T ss_conf 16776799866259999989-9987886787568954449999999999999819-----928998--898135899999 Q ss_pred HHHHHHHHHHCCCCCCCCC Q ss_conf 9999999973268711038 Q gi|254780429|r 78 IAVARGISLVLKQPALGVG 96 (206) Q Consensus 78 ia~akgLa~~~~~pv~gvs 96 (206) ..+++-+..-.++|++=++ T Consensus 77 ~~~~~~l~~~~~i~V~~vD 95 (142) T 3bzc_A 77 AGELIKKYPGMKLTKIMVS 95 (142) T ss_dssp HHHHHHHCGGGCCEEEEEC T ss_pred HHHHHHHCCCCCCEEEEEC T ss_conf 9999986767886289933 No 38 >>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} (A:1-244) Probab=85.11 E-value=2.8 Score=21.71 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=49.2 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC Q ss_conf 78862168012789997798139999998422-------------689998999999999760999878665430378 Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG 67 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G 67 (206) +|+||--|...-++|++.+ ++++++.....+ ...-+.+...++++.++.+.+..++.+|.++.. T Consensus 4 ~lgID~GTts~ka~l~d~~-g~~i~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~~ 80 (244) T 2d4w_A 4 VLAIDQGTTSSRAIVFDHS-GEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDIAAVGITNQ 80 (244) T ss_dssp EEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEEC T ss_pred EEEEEECCCCCHHEEECCC-CCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECC T ss_conf 9999711202012078398-9899999971780338998099999999999999999999975998777579999778 No 39 >>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} (A:1-20,A:55-323) Probab=84.65 E-value=2.4 Score=22.16 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=44.1 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 26899989999999997609998786654303785432024668999999997326871103838 Q gi|254780429|r 34 GRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNL 98 (206) Q Consensus 34 ~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvssl 98 (206) .-...+.....++++|+++|++++|||.+.++.-.+.++.--.+--++..+.. .++|.+.|+.. T Consensus 21 ~e~~~~La~~Aa~~AL~~aGi~~~dID~vi~~s~~~~~~~~~~a~~va~~lG~-~~~~~~~v~~~ 84 (289) T 3il3_A 21 DETVATMGFEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNI-DDAISFDLAAA 84 (289) T ss_dssp TCCHHHHHHHHHHHHHHHHCCCGGGCCEEEEECSCCSCSSSCHHHHHHHHTTC-SSCEEEEECCG T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC-CCCCEEEECCC T ss_conf 99999999999999887525564431268730324443310567777763278-84410102212 No 40 >>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} (A:83-194) Probab=84.24 E-value=1.3 Score=23.94 Aligned_cols=91 Identities=12% Similarity=0.171 Sum_probs=63.3 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCC-CHHH- Q ss_conf 2788621680127899977981399999984226----8999899999999976099987866543037-8543-2024- Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR----GHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGS-FTGV- 74 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r----~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGS-FTGl- 74 (206) .+|+||-.+..+.+++++.+ ++++.+.....+. .--+.+...+++++++.+++..++-+|.++. |+=. -+|. T Consensus 4 ~~igidig~t~i~~~l~d~~-g~ii~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~~g~vd~~~~~~ 82 (112) T 1z6r_A 4 HYLSLRISRGEIFLALRDLS-SKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIV 82 (112) T ss_dssp EEEEEEEETTEEEEEEEETT-CCEEEEEEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEETTTTEE T ss_pred EEEEEEECCCEEEEEEECCC-CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEE T ss_conf 89999988988999998799-98899999842568807999999999999999725544560079840233567787769 Q ss_pred --------HHHHHHHHHHHHHCCCCCC Q ss_conf --------6689999999973268711 Q gi|254780429|r 75 --------RVSIAVARGISLVLKQPAL 93 (206) Q Consensus 75 --------Rigia~akgLa~~~~~pv~ 93 (206) .-++..++-|...+++|++ T Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~g~Pv~ 109 (112) T 1z6r_A 83 HRXPFYEDVKEXPLGEALEQHTGVPVY 109 (112) T ss_dssp EECTTCTTCSSBCHHHHHHHHHSSCEE T ss_pred ECCCCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 545886544577368898765401222 No 41 >>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} (A:) Probab=83.01 E-value=0.75 Score=25.39 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=51.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHH--HHHHH Q ss_conf 68999899999999976099987866543037-854320246689999999973268711038-----38999--98752 Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSFTGVRVSIAVARGISLVLKQPALGVG-----NLEVL--ARAHL 106 (206) Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSFTGlRigia~akgLa~~~~~pv~gvs-----sle~l--a~~~~ 106 (206) +.-.+.....+.++|+++|++++|||.+.++. .|+.+.+-...-..++...-..++|.+-|+ ...++ |.... T Consensus 24 ~~~~~L~~~A~~~Al~dAgl~~~dID~ii~g~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~v~~~cas~~~al~~A~~~I 103 (401) T 1ulq_A 24 VRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAI 103 (401) T ss_dssp SCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSSTTTTTHHHHHHHHTTCCTTCEEEEEECGGGHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH T ss_conf 99999999999999998094979939899994676554413499999996696975425776325530013466798887 Q ss_pred CCCCCCEEEEE Q ss_conf 14678659998 Q gi|254780429|r 107 DSHVGRPIMVL 117 (206) Q Consensus 107 ~~~~~~~i~~~ 117 (206) ..-....++++ T Consensus 104 ~sG~~d~vLv~ 114 (401) T 1ulq_A 104 WAGEGKVYIGS 114 (401) T ss_dssp HTTSCSEEEEE T ss_pred HCCCCCCCCEE T ss_conf 46887654103 No 42 >>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase, transferase; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3gwe_A (A:1-41,A:77-203) Probab=82.65 E-value=1.1 Score=24.28 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=52.5 Q ss_pred EEEEEEECC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-----HH Q ss_conf 999998422-689998999999999760999878665430378543202466899999999732687110383-----89 Q gi|254780429|r 26 LGSYFKNLG-RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN-----LE 99 (206) Q Consensus 26 ~~~~~~~~~-r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss-----le 99 (206) +....-..+ ..-.+.....++++|++++++++|||.|+++.=.+-+..-=.+.-++..+....++|.+-++. +. T Consensus 33 ~~~~~~~~~des~~~LA~~A~~~aL~~agi~p~dID~iv~gs~t~~~~~~~~a~~ia~~lGl~~~~~~~~i~~aCasg~~ 112 (168) T 3gwa_A 33 IADIAGHLPRETAADLAYEAARKLFAQGAVGADQVDFVILCTQAPDYVLPTSACMLQHRLGIPTHAGALDVNLGCSGYVY 112 (168) T ss_dssp EEEEEEECCTCCHHHHHHHHHHHHHHTTSCCGGGCCEEEEEESSCSCSBSCHHHHHHHHTTCCTTSEEEEEECSTTHHHH T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHH T ss_conf 99999988999999999999999999759791206758984102566663366777765303565077661213344678 Q ss_pred H--HHHHHHCCCCCCEEEEE Q ss_conf 9--99875214678659998 Q gi|254780429|r 100 V--LARAHLDSHVGRPIMVL 117 (206) Q Consensus 100 ~--la~~~~~~~~~~~i~~~ 117 (206) + ++.+.......+.++++ T Consensus 113 Al~~A~~~I~aG~~~~vLvv 132 (168) T 3gwa_A 113 GLSLAKGLVETGAARCVLLL 132 (168) T ss_dssp HHHHHHHHHHTTSCSEEEEE T ss_pred HHHHHHCEECCCCCCEEEEE T ss_conf 87632031027985213563 No 43 >>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* (A:1-15,A:50-172) Probab=82.36 E-value=3.6 Score=20.99 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=48.2 Q ss_pred EECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-----CCCHHHHH--HH Q ss_conf 842268999899999999976099987866543037854320246689999999973268711-----03838999--98 Q gi|254780429|r 31 KNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPAL-----GVGNLEVL--AR 103 (206) Q Consensus 31 ~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~-----gvssle~l--a~ 103 (206) ...+..-.+.....++++|+++++++++||.|+++..-+-+.+=-.+.-++..+.. .+.|.+ .-+.+.++ +. T Consensus 12 ~~~~es~~~La~~A~~~aL~~agidp~~ID~vv~gs~~~~~~~~~~a~~i~~~lgl-~~~~~~~i~~~c~sg~~al~~a~ 90 (138) T 3il6_A 12 RYVPENTSDLCHQVAKQLLEKSGKQASEIDFILVATVTPDFNMPSVACQVQGAIGA-TEAFAFDISAAXSGFVYALSMAE 90 (138) T ss_dssp EECCCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSCSCSSSCHHHHHHHHTTC-TTCEEEEECCGGGHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC-CCCHHHHHHCCCCCEECHHHHHC T ss_conf 98899879999999999987531125444336884025876204688998776048-87300012034343000133320 Q ss_pred HHHCCCCCCEEEEE Q ss_conf 75214678659998 Q gi|254780429|r 104 AHLDSHVGRPIMVL 117 (206) Q Consensus 104 ~~~~~~~~~~i~~~ 117 (206) ..........++++ T Consensus 91 ~~i~~g~~~~vLvv 104 (138) T 3il6_A 91 KLVLSGRYQTGLVI 104 (138) T ss_dssp HHHHTSSCCCEEEE T ss_pred CHHCCCCCCCCCCC T ss_conf 12116985443110 No 44 >>3gbt_A Gluconate kinase; LBA0354, FGGY kinase family, carbohydrate metabolic process, transferase, structural genomics, PSI-2; 2.40A {Lactobacillus acidophilus ncfm} (A:1-237) Probab=82.24 E-value=1.5 Score=23.41 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=42.3 Q ss_pred CC-EEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---------HHHHHHHHHHHHHHHH-HCCCHHHHHHHHCCC Q ss_conf 92-788621680127899977981399999984226---------8999899999999976-099987866543037 Q gi|254780429|r 1 MI-VLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---------GHAEHLMPAIDYALKD-SRLEVSQVDRVVTAL 66 (206) Q Consensus 1 M~-iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---------~hs~~L~~~i~~lL~~-~~~~~~~id~iav~~ 66 (206) |+ +|+||-.|..+-++|++.+ ++++.+.....+. ...+.+...+.+.+.+ .+....+|.+|.++. T Consensus 3 m~~~lgID~GTts~ka~l~d~~-g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~I~~I~is~ 78 (237) T 3gbt_A 3 LKYIIGXDVGTTATKGVLYDIN-GKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKIDGKIAAISWSS 78 (237) T ss_dssp CEEEEEEEECSSEEEEEEEETT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCSSEEEEEEEEE T ss_pred CCEEEEEECCCCCEEEEEEECC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 7789999751103100068388-989999998478316999971479999999999999999963888715999847 No 45 >>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta- alpha-beta-alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* (A:) Probab=81.93 E-value=0.76 Score=25.33 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=51.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHH--HHHHHC Q ss_conf 68999899999999976099987866543037854320246689999999973268711038-----38999--987521 Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG-----NLEVL--ARAHLD 107 (206) Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs-----sle~l--a~~~~~ 107 (206) +...+.....+.++|+++|++++|||.++++.-++++.|-..+-...........+|...++ ...++ |..... T Consensus 30 ~s~~~L~~eA~~~Al~dagl~~~dId~vv~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~asg~~a~~~Aa~~I~ 109 (395) T 2ib8_A 30 LPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLM 109 (395) T ss_dssp SCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTCCEEEEECGGGHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHC T ss_conf 99999999999999987293989928999994684342558999999851457788636762355533106677887741 Q ss_pred CCCCCEEEEE Q ss_conf 4678659998 Q gi|254780429|r 108 SHVGRPIMVL 117 (206) Q Consensus 108 ~~~~~~i~~~ 117 (206) ......++++ T Consensus 110 sG~~~~vlv~ 119 (395) T 2ib8_A 110 CGHQDVMVAG 119 (395) T ss_dssp TTSCSEEEEE T ss_pred CCCCCCEEEE T ss_conf 7974421445 No 46 >>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} (A:183-227,A:313-363) Probab=81.55 E-value=0.42 Score=27.02 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=53.9 Q ss_pred CCEEEEECCCHHHEEEEEECC--CCEEEEEEEEECCHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHH Q ss_conf 927886216801278999779--8139999998422689-99899999999976099987866543037854320246 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSH--AGRILGSYFKNLGRGH-AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVR 75 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~--~~~~~~~~~~~~~r~h-s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlR 75 (206) +++|.+|--..+.-|.++.-. .+.-+++.....+.+| -+.+...++++|++++++++|||.|...=|.-.---+| T Consensus 6 ~~~lv~d~GGGt~Dvsi~~~~~~~~~~~~~~~a~~G~~~l~er~~~~i~~aL~~Agl~~~dId~ViLVGGSSRIP~Vq 83 (96) T 2kho_A 6 RTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQ 83 (96) T ss_dssp EEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHH T ss_pred CEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCHHHH T ss_conf 589999979971899999997067872899999457776599999999999998599989998899988746567999 No 47 >>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} (A:1-122,A:314-332) Probab=81.47 E-value=1.5 Score=23.44 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=66.4 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHH----- Q ss_conf 927886216801278999779813999999842268999899999999976099987866543037854320246----- Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVR----- 75 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlR----- 75 (206) |.+|+||-....+.+++++.+.+.+.......... .+.+...+++++++.+-+ +..|.++. ||-+.+-+ T Consensus 14 ~~~lgiDIGgT~i~~al~d~~g~~i~~~~~~~t~~--~~~~~~~i~~ii~~~~~~---i~~igI~~-pG~Vd~~~~~~~n 87 (141) T 1sz2_A 14 KYALVGDVGGTNARLALCDIASGEISQAKTYSGLD--YPSLEAVIRVYLEEHKVE---VKDGCIAI-ACPITGDWVAXTN 87 (141) T ss_dssp CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG--CSCHHHHHHHHHHHSCCC---CCEEEEEE-SSCCCSSEECCSS T ss_pred CEEEEEEECCHHHHHEEEECCCCEEEEEEEECCCC--HHHHHHHHHHHHHHCCCC---CCEEEEEE-ECCEECCCEEEEE T ss_conf 38999997805432546989999896888878998--768999999999866998---76589993-4673288114652 Q ss_pred --HHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf --68999999997326871103838999987 Q gi|254780429|r 76 --VSIAVARGISLVLKQPALGVGNLEVLARA 104 (206) Q Consensus 76 --igia~akgLa~~~~~pv~gvssle~la~~ 104 (206) --+...+.|....++|++=.+--.+.|.. T Consensus 88 ~~w~~~l~~~L~~~~g~pV~ieNDanaaala 118 (141) T 1sz2_A 88 HTWAFSIAEXKKNLGFSHLEIINDFTAVSXA 118 (141) T ss_dssp SCCCEEHHHHHHHHTCSEEEEEEHHHHHHHH T ss_pred CCCCCCHHHHHHCCCCCEEEEECCCCHHHHH T ss_conf 1336787888742256368861131203266 No 48 >>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} (A:1-119,A:275-289) Probab=80.44 E-value=2.9 Score=21.59 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=68.0 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEEC-CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCH-HHH-- Q ss_conf 927886216801278999779813999999842-268999899999999976099987866543037-854320-246-- Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNL-GRGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSFT-GVR-- 75 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~-~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSFT-GlR-- 75 (206) |.+++||-....+.+++++-. ++++.+..... .+...+.+...+.+++++ ..+++.+|.++. ||-... |+- T Consensus 1 myvigidig~~~i~~~l~dl~-g~ii~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~i~gIgia~pG~v~~~~g~v~~ 76 (134) T 2aa4_A 1 MTTLAIDIGGTKLAAALIGAD-GQIRDRRELPTPASQTPEALRDALSALVSP---LQAHAQRVAIASTGIIRDGSLLALN 76 (134) T ss_dssp CCEEEEEECSSEEEEEEECTT-CCEEEEEEEECCSSCCHHHHHHHHHHHHTT---TGGGCSEEEEEESSEEETTEEECSS T ss_pred CCEEEEEECHHHEEEEEECCC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHH---HHHHCCCEEEEEEEEEEECCCCEEE T ss_conf 979999988104899999799-979999999789888999999999999999---8764374146544555410110010 Q ss_pred -------HHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf -------6899999999732687110383899998 Q gi|254780429|r 76 -------VSIAVARGISLVLKQPALGVGNLEVLAR 103 (206) Q Consensus 76 -------igia~akgLa~~~~~pv~gvssle~la~ 103 (206) -++...+-|...+++|++=.+--.+.|. T Consensus 77 ~~~~~~w~~v~l~~~l~~~~~~Pv~i~NDan~aal 111 (134) T 2aa4_A 77 PHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAW 111 (134) T ss_dssp GGGGGGGTTCCHHHHHHHHHCSCEEEEEHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH T ss_conf 13555334552455555654145112301556554 No 49 >>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} (A:) Probab=78.89 E-value=4.6 Score=20.24 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=47.1 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC Q ss_conf 78862168012789997798139999998422-------------68999899999999976099987866543037 Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206) +|+||-.|...-++|++.+ +++++......+ ..--+.+...+.+++++.++...+|.+|.++- T Consensus 5 ~lgiDiGTssvKa~l~d~~-g~~v~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~l~~~~~~~~~~i~~I~~s~ 80 (510) T 2p3r_A 5 IVALDQGTTSSRAVVMDHD-ANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITN 80 (510) T ss_dssp EEEEEECSSEEEEEEECTT-CCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE T ss_pred EEEEEECCCCCHHHEECCC-CCEEEEEEECCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEC T ss_conf 9999820213001167198-989999996378042899908999999999999999999997599877768999978 No 50 >>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} (D:183-227,D:312-363) Probab=78.88 E-value=0.8 Score=25.22 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=50.4 Q ss_pred CCEEEEECCCHHHEEEEEECC--CCEEEEEEEEECCHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHH Q ss_conf 927886216801278999779--8139999998422689--99899999999976099987866543037854320246 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSH--AGRILGSYFKNLGRGH--AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVR 75 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~--~~~~~~~~~~~~~r~h--s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlR 75 (206) +++|.+|--..+.-|.++.-. .+.-+.+.....+-.| -+.+...++++|+++++++++||.|...=|.-----+| T Consensus 6 ~~~~v~D~GGGT~Dvtil~~~~~~~~~~~~v~a~~G~~~lL~er~~~~i~~aL~~Agl~~~dId~ViLVGGsSRIP~Vq 84 (97) T 1dkg_D 6 RTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQ 84 (97) T ss_dssp EEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHH T ss_pred CEEEEEEECCCEEEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCHHHHHHHH T ss_conf 3899999789909999999976568835999980699775999999999999998498988999899989254178999 No 51 >>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A (A:) Probab=77.89 E-value=1.6 Score=23.27 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=47.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 68999899999999976099987866543037854320246689999999973268711038 Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG 96 (206) Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs 96 (206) +.-.+.....+.++|+++++++++||.++++.-.+.+++--..-..+.......++|.+.+. T Consensus 28 ~~~~~L~~~a~~~Al~dagl~~~~Id~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 89 (397) T 1wl4_A 28 VPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQ 89 (397) T ss_dssp SCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTSCEEEEC T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEE T ss_conf 99999999999999987096989979899994176564535999999976996324200000 No 52 >>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} (A:157-197,A:283-314) Probab=77.55 E-value=2.4 Score=22.07 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=45.1 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC Q ss_conf 278862168012789997798139999998422689998999999999760999878665430378 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG 67 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G 67 (206) ++|.+|--..+.-|+++.-+++. +......-...-.+..+.-++++|+.++++.+|||.|...=| T Consensus 6 ~vlVfDlGGGTfDVSll~i~~~~-~~V~at~Gd~~LG~r~~~pv~~~L~da~l~~~dIdeViLVGG 70 (73) T 2v7y_A 6 TILVYDLGGGTFDVSILELGDGV-FEVKATAGDNHLGERTMGPVRQALQDAGLTPADIDKVILVGG 70 (73) T ss_dssp EEEEEEECSSCEEEEEEEEETTE-EEEEEEEEETTCSHTTHHHHHHHHHHHTCCGGGCSEEEEESG T ss_pred EEEEEECCCCCEEEEEEEECCCE-EEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCCEEEEECC T ss_conf 89999989971899999970988-999994488775899999999999984999899958999898 No 53 >>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A (A:1-120,A:276-302) Probab=76.19 E-value=3.9 Score=20.76 Aligned_cols=98 Identities=9% Similarity=0.010 Sum_probs=69.3 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCHH-H----- Q ss_conf 27886216801278999779813999999842268999899999999976099987866543037-8543202-4----- Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSFTG-V----- 74 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSFTG-l----- 74 (206) .+|+||-......+++++-+ ++++.+....... .+.+...|.+++++...+...+..+.++. |+-...+ . T Consensus 4 ~~iGIdIg~t~i~~~l~Dl~-G~ii~~~~~p~~~--~~~~~~~I~~~i~~~~~~~~~i~gigi~~pG~vd~~~g~i~~~~ 80 (147) T 3epq_A 4 XLGGIEAGGTXFVCAVGRED-GTIIDRIEFPTXX--PDETIEXVIQYFSQFSLQAIGIGSFGPVDNDXTSQTYGTITATP 80 (147) T ss_dssp CEEEEEECSSEEEEEEECTT-SCEEEEEEEECCC--HHHHHHHHHHHHTTSCCSEEEEEECSSEECCTTSTTTTEECCCS T ss_pred EEEEEEECCCEEEEEEECCC-CCEEEEEEECCCC--HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCEEECCC T ss_conf 69999977777999999699-9599999965899--79999999999987147655881014013566641111692589 Q ss_pred ---HHHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf ---6689999999973268711038389999 Q gi|254780429|r 75 ---RVSIAVARGISLVLKQPALGVGNLEVLA 102 (206) Q Consensus 75 ---Rigia~akgLa~~~~~pv~gvssle~la 102 (206) --++.+.+-|....++|++=.+--.+.| T Consensus 81 ~~~w~~~~L~~~L~~~~~~PV~ieNDanaaa 111 (147) T 3epq_A 81 XAGWRHYPFLQTVXNEXXIPVGFSTDVNAAA 111 (147) T ss_dssp STTTBTCCHHHHHHHHHCSCEEEEEHHHHHH T ss_pred CCCCCCCCHHHHHHHCCCCCEEEECCHHHHH T ss_conf 8663788549989753564579964578889 No 54 >>2c7y_A 3-ketoacyl-COA thiolase 2; fatty acid metabolism, transferase, oxylipin synthesis, lipid synthesis, acyltransferase; 2.1A {Arabidopsis thaliana} PDB: 2c7z_A (A:) Probab=76.06 E-value=2.6 Score=21.91 Aligned_cols=88 Identities=11% Similarity=0.016 Sum_probs=50.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCC-----CCCHHHHHH--HHHHC Q ss_conf 89998999999999760999878665430378-54320246689999999973268711-----038389999--87521 Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDRVVTALG-PGSFTGVRVSIAVARGISLVLKQPAL-----GVGNLEVLA--RAHLD 107 (206) Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G-PGSFTGlRigia~akgLa~~~~~pv~-----gvssle~la--~~~~~ 107 (206) .-.+.....++++|+++|++++|||.++++.- ++.+.+...+-...........+|.. +-+...++. +.... T Consensus 37 s~~~L~~~A~~~Al~daGl~~~dID~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~casg~~ai~~Aa~~I~ 116 (404) T 2c7y_A 37 YPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIK 116 (404) T ss_dssp CTHHHHHHHHHHHHHTTTCCGGGCCEEEEECCSSCTTHHHHHHHHHHHHTTCCTTSCEEECSCSSCCSHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCHHCCCHHC T ss_conf 89999999999999985979899198999960476666767999999976989520311010334545332100130002 Q ss_pred CCCCCEEEEE-ECCCCC Q ss_conf 4678659998-508714 Q gi|254780429|r 108 SHVGRPIMVL-VSLFHQ 123 (206) Q Consensus 108 ~~~~~~i~~~-idArr~ 123 (206) .-....++++ .+.... T Consensus 117 sG~~~vvlv~g~e~~s~ 133 (404) T 2c7y_A 117 AGFYDIGIGAGLESMTT 133 (404) T ss_dssp TTSCSEEEEEEEECSCC T ss_pred CCCCCEEEEEECCCCCC T ss_conf 89966677530155666 No 55 >>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} (A:14-177) Probab=73.95 E-value=3.6 Score=20.92 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=42.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 899989999999997609998786654303785432024668999999997326871103838 Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNL 98 (206) Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvssl 98 (206) ...+.....+.++|+++|+++++||.+.++..-|..+. +..++..++.|.+.+++- T Consensus 41 ~~~~L~~~a~~~aL~~agi~~~~i~~~~~g~~~~~~~~-------~~~~~~~lg~p~~~v~~a 96 (164) T 3lma_A 41 AERKLXEDAVQSALSKQNLKKEDIDIFLAGDLLNQNVT-------ANYVARHLKIPFLCLFGA 96 (164) T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCSEEEEEESSSSSTT-------HHHHHHHHCCCEEEBCCS T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCHHH-------HHHHHHHCCCCEEEECCC T ss_conf 99999999999999981989899889999970496789-------999999739988630573 No 56 >>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, lipid metabolism, structural genomics, NPPSFA; 2.10A {Aquifex aeolicus VF5} (A:171-309) Probab=73.58 E-value=1.7 Score=23.03 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=37.4 Q ss_pred EECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 84226899989999999997609998786654303785432024668999999997326871 Q gi|254780429|r 31 KNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPA 92 (206) Q Consensus 31 ~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv 92 (206) ....+.-.+.+.+.++++|+++|++.+|+|.+++-.+ +....+.++..+++|- T Consensus 32 ~~v~~~~~~~~~~~~~~~l~~~g~~~~did~~~~Hq~---------~~~~~~~~~~~lg~~~ 84 (139) T 2ebd_A 32 RELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQA---------NVRIINALAEKLNIPK 84 (139) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEECCS---------CHHHHHHHHHHTTCCG T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCC---------CHHHHHHHHHHCCCCH T ss_conf 3677888888999899999980999688234530278---------8899999998739698 No 57 >>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} (A:1-241) Probab=72.94 E-value=6.6 Score=19.23 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=58.2 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---------HHHHHHHHHHHHHHH---HHCCCHHHHHHHHCCC-C Q ss_conf 92788621680127899977981399999984226---------899989999999997---6099987866543037-8 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---------GHAEHLMPAIDYALK---DSRLEVSQVDRVVTAL-G 67 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---------~hs~~L~~~i~~lL~---~~~~~~~~id~iav~~-G 67 (206) |.+|+||-.|..+-++|++.+ ++++++.....+. ...+.+...+.++++ +.+.+..++.+|.++. | T Consensus 5 ~~vlgiDiGTts~Ka~l~d~~-g~vv~~~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~l~~~~~~~~~i~aI~~s~~~ 83 (241) T 3hz6_A 5 FYIATFDIGTTEVKAALADRD-GGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWWQSGVDARRVSAIVLSGQX 83 (241) T ss_dssp CEEEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEECC T ss_pred EEEEEEEECCCCEEHEEEECC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCC T ss_conf 279999850011012068288-9999999983572568999756899999999999999999739996564799994677 Q ss_pred CC-------------CCHHH-HHHHHHH---------HHHHHHCCCCCCCCCHHHHHHH Q ss_conf 54-------------32024-6689999---------9999732687110383899998 Q gi|254780429|r 68 PG-------------SFTGV-RVSIAVA---------RGISLVLKQPALGVGNLEVLAR 103 (206) Q Consensus 68 PG-------------SFTGl-Rigia~a---------kgLa~~~~~pv~gvssle~la~ 103 (206) .| .++-. +-+...+ .-+....+.|+.+-.++--++. T Consensus 84 ~~~v~~d~~g~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~w 142 (241) T 3hz6_A 84 QNFLPLDQDHEPLHRAVLYSDKRPLKEAEEINARHGADNLWSALENPXTAASILPKLVF 142 (241) T ss_dssp SCBEEECTTSCBSSCEECTTCCCCHHHHHHHHHHHCHHHHHHHHSSCCSTTSHHHHHHH T ss_pred CCEEEECCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHH T ss_conf 88899999898995652147876578886555305425654304886322236789887 No 58 >>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp} (A:1-158,A:371-384) Probab=72.73 E-value=6.7 Score=19.20 Aligned_cols=115 Identities=10% Similarity=0.074 Sum_probs=70.6 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEE---------------------CCHHHHHHHHHHHHHHHHHHCCCHHHHH Q ss_conf 2788621680127899977981399999984---------------------2268999899999999976099987866 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKN---------------------LGRGHAEHLMPAIDYALKDSRLEVSQVD 60 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~---------------------~~r~hs~~L~~~i~~lL~~~~~~~~~id 60 (206) +||+|+.-+..+-++|++.++.+.+++-... ..-.|...+-..++.+ .+. ....+|+ T Consensus 3 kILviN~GSSSlK~alf~~~~~~~l~~g~ie~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~il~~L-~~~-~~~~~i~ 80 (172) T 3khy_A 3 EILVLNCGSSSVKFALINPHTSQSLVTGLAENIATKNCKVVFKAEHKIVKYLENGSYKDVFEXLKDFL-VEN-KHLEKIV 80 (172) T ss_dssp EEEEEEECSSCEEEEEEETTTTEEEEEEEEESTTSTTCEEEEESSSEEEEECTTCCHHHHHHHHHHHH-HHT-TCGGGEE T ss_pred EEEEEECCHHHHHHEEEECCCCCEEEEEEEEECCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHH-HHC-CCCCCEE T ss_conf 39999387674714679789987788987865179984699954883355347789999999999998-636-9855147 Q ss_pred HHHCCCC--CCCCHH-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHH--HHHCCCCCCEEEEEECC Q ss_conf 5430378--543202-466899999999732687110383899998--75214678659998508 Q gi|254780429|r 61 RVVTALG--PGSFTG-VRVSIAVARGISLVLKQPALGVGNLEVLAR--AHLDSHVGRPIMVLVSL 120 (206) Q Consensus 61 ~iav~~G--PGSFTG-lRigia~akgLa~~~~~pv~gvssle~la~--~~~~~~~~~~i~~~idA 120 (206) +|+.=.| ..-|+| .||.-.+.+.|-. -.|+.+.+..-.++. .+.+...+-+.+++.|- T Consensus 81 aVghRvVhgG~~~~~~~~I~~~vl~~L~~--~~~lAPlHnp~~l~~i~~~~~~~p~~p~vavFDT 143 (172) T 3khy_A 81 AIGHRVVHGGQYFSKSVLINADSLEKIKA--CIALAPLHNPAHIEGIRFCQQIFPELPQVAVFDT 143 (172) T ss_dssp EEEEEESCCTTTCSSCEECSHHHHHHHHH--TGGGSTTTHHHHHHHHHHHHHHSTTSCEEEEETT T ss_pred EEECCCCCCCCCCCCCEECCHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 88123567786568857788999999996--3677765670268999999986799994887078 No 59 >>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} (A:) Probab=70.57 E-value=3.4 Score=21.15 Aligned_cols=61 Identities=13% Similarity=0.057 Sum_probs=39.8 Q ss_pred HHHHHHHHHHHHHHHH-CCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCH Q ss_conf 9998999999999760-999878665430378-543202466899999999732687110383 Q gi|254780429|r 37 HAEHLMPAIDYALKDS-RLEVSQVDRVVTALG-PGSFTGVRVSIAVARGISLVLKQPALGVGN 97 (206) Q Consensus 37 hs~~L~~~i~~lL~~~-~~~~~~id~iav~~G-PGSFTGlRigia~akgLa~~~~~pv~gvss 97 (206) -.+.....+.++|+++ |++++|||.+.++.- |+.+.+....-..+..-.....+|...++. T Consensus 27 ~~~L~~~a~~~al~da~gl~~~dId~v~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~ 89 (387) T 3goa_A 27 AEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNR 89 (387) T ss_dssp HHHHHHHHHHHHHHHCTTSCGGGCCEEEEECSCCSBTTTTTHHHHHHHHTTCCTTSCCEEEEC T ss_pred HHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHCC T ss_conf 999999999999972799598999999999477545441069999999779994320224324 No 60 >>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} (A:138-278) Probab=68.72 E-value=7.5 Score=18.90 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=40.9 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC Q ss_conf 788621680127899977981399999984226899-----------989999999997609998786654303785432 Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHA-----------EHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF 71 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs-----------~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF 71 (206) ++++|.- .+.++++.+...+.+.+.....++.|. +..+..|-+.+.+. +++.+++.|.+ .|||-+ T Consensus 7 ~v~id~g--~A~i~ll~~~~~~~~~~i~~~ip~K~~~~g~s~~~~~~~~Ff~~V~~~~~~~-~~~~~v~~IIi-aGPGf~ 82 (141) T 2vgn_A 7 AVVLQEG--IAHVCLVTSSSTILKQKIEYSXPKKKRTTDVLKFDEKTEKFYKAIYSAXKKD-LNFDKLKTIIL-CSPGFY 82 (141) T ss_dssp EEEEETT--EEEEEEECSSCEEEEEEEEC---------CCSSCCHHHHHHHHHHHHHHHHH-CCTTTCSEEEE-EESTTH T ss_pred EEEEECC--CEEEEEECCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEE-ECCHHH T ss_conf 9999569--6899998276599999999826776776640046679999999999999987-42213647999-686899 Q ss_pred H Q ss_conf 0 Q gi|254780429|r 72 T 72 (206) Q Consensus 72 T 72 (206) - T Consensus 83 K 83 (141) T 2vgn_A 83 A 83 (141) T ss_dssp H T ss_pred H T ss_conf 9 No 61 >>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, lipid metabolism, structural genomics, NPPSFA; 2.10A {Aquifex aeolicus VF5} (A:1-170) Probab=68.70 E-value=7.7 Score=18.82 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=61.5 Q ss_pred EEEEECCCHHHEEEEEE-----CCC------CEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC Q ss_conf 78862168012789997-----798------1399999984226899989999999997609998786654303785432 Q gi|254780429|r 3 VLALDTTGADCSVAIYD-----SHA------GRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF 71 (206) Q Consensus 3 iLaIdTs~~~~sval~~-----~~~------~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF 71 (206) |++|.+..+.-.+..-+ +.. ..-+..+.......-.+.....++++|+++++++++||.+.++.-.+-+ T Consensus 5 i~~i~~~~P~~~v~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~La~~a~~~~L~~~~~~~~~Id~li~g~~~~~~ 84 (170) T 2ebd_A 5 IIGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIAKEETITYMATQAAKEALREANLSPEELDLIILATLTPQK 84 (170) T ss_dssp EEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECSSCCHHHHHHHHHHHHHHHHTCCGGGCSEEEEECSSCSS T ss_pred EEEEEEECCCCEECHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHCEEEEEECCCCCC T ss_conf 99999988996282999998719988998773194588777999869999999985443145487682389985047886 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCH-----HHH--HHHHHHCCCCCCEEEEE Q ss_conf 02466899999999732687110383-----899--99875214678659998 Q gi|254780429|r 72 TGVRVSIAVARGISLVLKQPALGVGN-----LEV--LARAHLDSHVGRPIMVL 117 (206) Q Consensus 72 TGlRigia~akgLa~~~~~pv~gvss-----le~--la~~~~~~~~~~~i~~~ 117 (206) +.=-.+.-.. ......++|.+.++. +.+ +|.+.......+.++++ T Consensus 85 ~~~~~~~~~~-~~~g~~~~~~~~v~~~C~~g~~al~~A~~~i~sg~~~~~lvv 136 (170) T 2ebd_A 85 RFPSTACLVQ-AQLKAKGVYAFDISAACSGFIYALDIADSFIKSGKAKNVLVI 136 (170) T ss_dssp SSSCHHHHHH-HHHTCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEE T ss_pred CCCCCCCCCC-CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 6433222333-222457440100004401899999999999975998759999 No 62 >>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A (A:1-231) Probab=67.62 E-value=8.6 Score=18.49 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=41.1 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---------HHHHHHHHHHHHHHHH--HCCCHHHHHHHHCCCC Q ss_conf 2788621680127899977981399999984226---------8999899999999976--0999878665430378 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---------GHAEHLMPAIDYALKD--SRLEVSQVDRVVTALG 67 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---------~hs~~L~~~i~~lL~~--~~~~~~~id~iav~~G 67 (206) ++|+||-.|..+-+++++.+ ++++++...+.+. ...+.+...+.+.+++ .....+++.+|.++.- T Consensus 1 ~~lgiDiGTts~Ka~l~d~~-g~vv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~i~~I~~s~~ 76 (231) T 2itm_A 1 MYIGIDLGTSGVKVILLNEQ-GEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIAGQ 76 (231) T ss_dssp CEEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSCCTTCCEEEEEEC T ss_pred CEEEEEECCCCEEEEEEECC-CCEEEEEEEECCEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC T ss_conf 98999962225221278088-98999999844514589983898999999999999999997669557479999766 No 63 >>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A (A:171-313) Probab=67.49 E-value=8.2 Score=18.65 Aligned_cols=51 Identities=10% Similarity=0.080 Sum_probs=36.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 226899989999999997609998786654303785432024668999999997326871 Q gi|254780429|r 33 LGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPA 92 (206) Q Consensus 33 ~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv 92 (206) ..+.-.+.+...++++|++++++++|||.+++-.+ +.+ +.+.++..+++|. T Consensus 36 v~~~~~~~~~~~~~~~l~~~g~~~~did~~i~h~~-----~~~----~~~~~~~~lg~~~ 86 (143) T 1zow_A 36 VFKFAVRIMGDASTRVVEKANLTSDDIDLFIPHQA-----NIR----IMESARERLGISK 86 (143) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGCSEEEECCS-----CHH----HHHHHHHHHTCCG T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC-----CHH----HHHHHHHHCCCCH T ss_conf 65655530026788898871289899888887331-----168----9999998719997 No 64 >>3fk5_A 3-oxoacyl-synthase III; bacterial blight, XOO4209, FABH, xanthomonas oryzae PV. oryzae KACC10331, cytoplasm, multifunctional enzyme; 2.05A {Xanthomonas oryzae PV} (A:) Probab=67.32 E-value=5.4 Score=19.82 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=58.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-----HHH--HHHHHHCC Q ss_conf 89998999999999760999878665430378543202466899999999732687110383-----899--99875214 Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN-----LEV--LARAHLDS 108 (206) Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss-----le~--la~~~~~~ 108 (206) ...+....+..++|+++++++++||.+.++..-+.+.+--...-+.+.+.....+|.+-++. +.+ +|.+.... T Consensus 60 ~~~~la~~aa~~al~~~~~~~~~id~vi~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~v~~~C~s~~~al~~A~~~l~~ 139 (338) T 3fk5_A 60 QASDAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLER 139 (338) T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGEEEEEECCSSCSCSSSCHHHHHHHHHTCCTTCEEEECCCGGGHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999984989899999999702589868869999999818999869997531267999999999888744 Q ss_pred CCCCEEEEE Q ss_conf 678659998 Q gi|254780429|r 109 HVGRPIMVL 117 (206) Q Consensus 109 ~~~~~i~~~ 117 (206) .....++++ T Consensus 140 g~~~~~lv~ 148 (338) T 3fk5_A 140 GEIDYALVV 148 (338) T ss_dssp TSCSEEEEE T ss_pred CCCCEEEEE T ss_conf 996459997 No 65 >>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} (A:) Probab=66.77 E-value=2.5 Score=22.03 Aligned_cols=86 Identities=15% Similarity=0.050 Sum_probs=54.4 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC---CCCHH-HHHH Q ss_conf 2788621680127899977981399999984226899989999999997609998786654303785---43202-4668 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP---GSFTG-VRVS 77 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP---GSFTG-lRig 77 (206) .|||||--+..+.+|+-+... .+ +.-.....++..+.....+.+++++. +++.|+++.+= |+.+- -+.. T Consensus 4 rilgiD~G~kriGiAi~d~~~-~i-a~p~~~i~~~~~~~~~~~l~~li~~~-----~~~~iViGlP~~~~g~~~~~a~~v 76 (138) T 1nu0_A 4 TLXAFDFGTKSIGVAVGQRIT-GT-ARPLPAIKAQDGTPDWNIIERLLKEW-----QPDEIIVGLPLNXDGTEQPLTARA 76 (138) T ss_dssp EEEEEECCSSEEEEEEEETTT-TE-EEEEEEEEEETTEECHHHHHHHHHHH-----CCSEEEEEEEECTTSCBCHHHHHH T ss_pred CEEEEEECCCEEEEEEECCCC-CC-CCCEEEEECCCCCHHHHHHHHHHHHC-----CCCEEEECCCCCCCCCCCHHHHHH T ss_conf 689999179979999947998-74-01407898167726899999986424-----873899644347778757899999 Q ss_pred HHHHHHHHHHCCCCCCC Q ss_conf 99999999732687110 Q gi|254780429|r 78 IAVARGISLVLKQPALG 94 (206) Q Consensus 78 ia~akgLa~~~~~pv~g 94 (206) ..+++-|+...++|++= T Consensus 77 ~~f~~~L~~~~~l~v~~ 93 (138) T 1nu0_A 77 RKFANRIHGRFGVEVKL 93 (138) T ss_dssp HHHHHHHHHHHCCCEEE T ss_pred HHHHHHHHHHHCCCEEE T ss_conf 99999999862999699 No 66 >>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} (A:1-120,A:236-249) Probab=65.98 E-value=8.7 Score=18.48 Aligned_cols=70 Identities=11% Similarity=0.001 Sum_probs=43.2 Q ss_pred CC--EEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHH Q ss_conf 92--788621680127899977981399999984226899989999999997609998786654303785432024 Q gi|254780429|r 1 MI--VLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGV 74 (206) Q Consensus 1 M~--iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGl 74 (206) |+ +|+||--+..+..|++++++-........... ...+.+...+++++. ...++++.++++..=++.|.. T Consensus 1 Ms~m~L~IDiGNT~iK~a~~~~~~~~~~~~~~t~~~-~~~~el~~~l~~~~~---~~~~~i~~v~isSVvp~~~~~ 72 (134) T 3bex_A 1 MDPMYLLVDVGNTHSVFSITEDGKTFRRWRLSTGVF-QTEDELFSHLHPLLG---DAMREIKGIGVASVVPTQNTV 72 (134) T ss_dssp CCCEEEEEEECSSEEEEEEESSSSSCEEEEEECCTT-CCHHHHHHHHHHHHG---GGGGGEEEEEEEESCHHHHHH T ss_pred CCCEEEEEEECCCCEEEEEEECCEEEEEEEECCCCC-CCHHHHHHHHHHHHH---CCHHHCCEEEECCCCCHHHHH T ss_conf 996299999277712899998999999999537876-788999999999850---104433335331258568999 No 67 >>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} (A:1-145,A:326-370) Probab=65.09 E-value=9.6 Score=18.18 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=21.6 Q ss_pred CCEEEEE--CCCHHHEEEEEE--CCCCEEEEEEEEECCH Q ss_conf 9278862--168012789997--7981399999984226 Q gi|254780429|r 1 MIVLALD--TTGADCSVAIYD--SHAGRILGSYFKNLGR 35 (206) Q Consensus 1 M~iLaId--Ts~~~~sval~~--~~~~~~~~~~~~~~~r 35 (206) |.++++- ||.+-.-++|++ ++.-+++...+...+. T Consensus 5 ~~~iGlMSGTSlDGID~alv~~~g~~~~~~~~~~~p~p~ 43 (190) T 3cqy_A 5 AYYIGLXSGTSXDGVDAVLVDFAGEQPQLIGTHTETIPT 43 (190) T ss_dssp CEEEEEEECTTCCCEEEEEEECSSSSCEEEEEEEECCCH T ss_pred CEEEEEECCHHHHHHEEEEEEEECCCEEEEEEECCCCCH T ss_conf 989998655424436258999808936998542431899 No 68 >>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} (C:) Probab=61.27 E-value=9.7 Score=18.17 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=43.1 Q ss_pred HHHHHHHHHHHHHH-HHCCCHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99989999999997-609998786654303785-4320246689999999973268711038 Q gi|254780429|r 37 HAEHLMPAIDYALK-DSRLEVSQVDRVVTALGP-GSFTGVRVSIAVARGISLVLKQPALGVG 96 (206) Q Consensus 37 hs~~L~~~i~~lL~-~~~~~~~~id~iav~~GP-GSFTGlRigia~akgLa~~~~~pv~gvs 96 (206) -.+.....+.++|+ .+++++++||.+.++... .++.|....-..+........+|.+.++ T Consensus 30 ~~~L~~~a~~~Al~~dagi~~~~id~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 91 (390) T 1wdk_C 30 AEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVS 91 (390) T ss_dssp HHHHHHHHHHHHHHHCTTSCGGGEEEEEEECSSBSBTTTTTHHHHHHTTSSSCTTSEEEEEE T ss_pred HHHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEC T ss_conf 99999999999998657969899898999957752333220999999965987534450010 No 69 >>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* (A:1-414) Probab=59.07 E-value=10 Score=18.01 Aligned_cols=61 Identities=7% Similarity=-0.011 Sum_probs=43.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH--HCCCCCCCCC Q ss_conf 899989999999997609998786654303785432024668999999997--3268711038 Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISL--VLKQPALGVG 96 (206) Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~--~~~~pv~gvs 96 (206) .-.+.-..+.+++|+++|++++|||.|.++.--+-++.=-.+.-+++-|.. +.+++.+.+. T Consensus 51 ~~~~la~~Aa~~aL~~agl~p~dId~lI~at~~~~~~~p~~a~~v~~~Lg~~g~~~~~~~di~ 113 (414) T 2f82_A 51 DVISMSFNAVTSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDST 113 (414) T ss_dssp CHHHHHHHHHHHHHHHTTCCGGGEEEEEEECCCCSCSSSCHHHHHTHHHHTTTCCCCBCCEEC T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEECC T ss_conf 999999999999999759998999999999389887777669999999974389875412112 No 70 >>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} (A:1-76,A:369-404,A:592-610) Probab=56.98 E-value=13 Score=17.27 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=48.8 Q ss_pred CC-EEEEECCCHHHEEEEEECCC-C--EEEEEEEEE-CC----HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC Q ss_conf 92-78862168012789997798-1--399999984-22----6899989999999997609998786654303785432 Q gi|254780429|r 1 MI-VLALDTTGADCSVAIYDSHA-G--RILGSYFKN-LG----RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF 71 (206) Q Consensus 1 M~-iLaIdTs~~~~sval~~~~~-~--~~~~~~~~~-~~----r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF 71 (206) |+ |-+||--+..+.+.|-+.+. + ++...-... .+ ..--....+.|.++|+++|++.+|+|.|-++--|=. T Consensus 1 mkiIaGIDiGaSat~ViLas~~~a~el~i~~~a~i~s~GikG~~pni~G~~~AI~kALekAGls~~DIdlIeINEA~m~- 79 (131) T 2d0o_A 1 MRYIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGIKGTLRNVFGIQEALALVARGAGIAVSDISLIRINEAQMA- 79 (131) T ss_dssp CEEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECCSSTTSTTHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECCHH- T ss_pred CCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEE- T ss_conf 9569898507752127889963898267752464666775674878999999999999982998777233332147200- Q ss_pred HHHHHHHHHHHHHHHHCCCCC Q ss_conf 024668999999997326871 Q gi|254780429|r 72 TGVRVSIAVARGISLVLKQPA 92 (206) Q Consensus 72 TGlRigia~akgLa~~~~~pv 92 (206) ..|+-|..-+++++ T Consensus 80 -------~ia~~~~~~~~~~v 93 (131) T 2d0o_A 80 -------MIAREIEQKLNIDV 93 (131) T ss_dssp -------HHHHHHHHHHCCEE T ss_pred -------HHHHHHHHHHCCHH T ss_conf -------46889999728514 No 71 >>2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} (A:1-114,A:273-292) Probab=55.55 E-value=14 Score=17.12 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=63.5 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCC-HHH----- Q ss_conf 27886216801278999779813999999842268999899999999976099987866543037-85432-024----- Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSF-TGV----- 74 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSF-TGl----- 74 (206) .+++||-....+.+++++.+ ++++.+.....+.. .+.+..++++++++.. +.+|+++. ||-.. +|+ T Consensus 5 ~~igidIg~~~i~~~lvd~~-g~il~~~~~~~~~~-~~~i~~~i~~~~~~~~-----i~gIgia~pG~vd~~~g~v~~~~ 77 (134) T 2gup_A 5 TIATIDIGGTGIKFASLTPD-GKILDKTSISTPEN-LEDLLAWLDQRLSEQD-----YSGIAXSVPGAVNQETGVIDGFS 77 (134) T ss_dssp CEEEEEEETTEEEEEEECTT-CCEEEEEEECCCSS-HHHHHHHHHHHHTTSC-----CSEEEEEESSEECTTTCBEESCC T ss_pred EEEEEEECCHHEEEEEEECC-CCEEEEEEECCCCC-HHHHHHHHHHHHHHCC-----CCEEEEEEECCEEECCCCCCCCC T ss_conf 99999987003799999089-96999999718876-9999999999865446-----75799854042540222223533 Q ss_pred -H--HHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf -6--6899999999732687110383899998 Q gi|254780429|r 75 -R--VSIAVARGISLVLKQPALGVGNLEVLAR 103 (206) Q Consensus 75 -R--igia~akgLa~~~~~pv~gvssle~la~ 103 (206) . -++...+-|...+++|++=-+--.+.|. T Consensus 78 ~~~w~~~~l~~~L~~~~g~PV~i~NDa~aaAl 109 (134) T 2gup_A 78 AVPYIHGFSWYEALSSYQLPVHLENDANCVGL 109 (134) T ss_dssp SSGGGSSSBHHHHTGGGCCCEEEEEHHHHHHH T ss_pred CCCCCCCCCHHHHHHCCCCCEEEECCHHHHHH T ss_conf 22235887423332048961898222116677 No 72 >>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} (A:181-335) Probab=55.27 E-value=7.7 Score=18.81 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=35.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 6899989999999997609998786654303785432024668999999997 Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISL 86 (206) Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~ 86 (206) +.-...+.+.++++|+++|++.+|||.+++..+ +.++--.+++.+.. T Consensus 48 ~~~~~~~~~~~~~~L~~~g~~~~did~~~~hq~-----~~~~~~~~~~~lgi 94 (155) T 1u6e_A 48 RWAAFKMGDVGRRAMDAAGVRPDQIDVFVPHQA-----NSRINELLVKNLQL 94 (155) T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCS-----CHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC-----CHHHHHHHHHHCCC T ss_conf 655540006799998752146321231563264-----24579999997396 No 73 >>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} (A:) Probab=53.22 E-value=4.2 Score=20.50 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=34.7 Q ss_pred HHHHHHHHHHHH----HHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 989999999997----6099987866543037854320246689999999973268711038 Q gi|254780429|r 39 EHLMPAIDYALK----DSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG 96 (206) Q Consensus 39 ~~L~~~i~~lL~----~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs 96 (206) +....++.++++ ++|+++++||.++++..+..+.+--..-.++..-.....+|...++ T Consensus 37 ~l~~~~~~~A~~~al~dAgl~~~~ID~vv~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~ 98 (393) T 1afw_A 37 YLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALN 98 (393) T ss_dssp HHHHHHHHHHHHTSCHHHHTCGGGCCCEEEECSSSBGGGHHHHHHHHHHTTCCTTSCEEEEE T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 99999999999728852489988989899983786342407999999954886433320003 No 74 >>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus HB8} (A:169-322) Probab=53.08 E-value=8.9 Score=18.41 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=34.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 899989999999997609998786654303785432024668999999997326871 Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPA 92 (206) Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv 92 (206) .-.+.+..+++++|++++++++|||.+.+-.+ +.+ ..+.+...+++|. T Consensus 49 ~~~~~~~~~~~~~l~~~g~~~~did~~i~hq~-----~~~----~~~~~~~~lg~~~ 96 (154) T 1ub7_A 49 FAVRVMNTATLEAIEKAGLTPEDIRLFVPHQA-----NLR----IIDAARERLGLPW 96 (154) T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCSEEEECCS-----CHH----HHHHHHHTTTCCG T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHCEEECCCC-----CHH----HHHHHHHHCCCCH T ss_conf 55543368899999983989799240012566-----688----9999999749997 No 75 >>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... (A:209-250,A:335-362) Probab=52.93 E-value=15 Score=16.85 Aligned_cols=62 Identities=26% Similarity=0.361 Sum_probs=40.9 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC Q ss_conf 278862168012789997798139999998422689998999999999760999878665430378 Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG 67 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G 67 (206) ++|.+|--..++-|+++.-+.+.+-- . ...+-.| .=+.-+++.|++++++.+|||.|...=| T Consensus 7 ~ilVfDlGGGTfDVSil~~~~~~~~V-~-at~GD~~--LG~~p~~~~l~da~~~~~~i~~vvlvGG 68 (70) T 3i33_A 7 NVLIFDLGGGTFDVSILTIEDGIFEV-K-STAGDTH--LGLEPVEKALRDAKLDKGQIQEIVLVGG 68 (70) T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEE-E-EEEEETT--CSHHHHHHHHHHHTCCGGGCCEEEEESG T ss_pred EEEEEEECCCEEEEEEEEEECCEEEE-E-EECCCCC--CCHHHHHHHHHHCCCCHHHCCEEEEECC T ss_conf 89999938982999999994998999-9-9448988--0799999999975998777998999893 No 76 >>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} (A:1-122,A:247-267) Probab=51.68 E-value=16 Score=16.72 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=60.9 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC-C------- Q ss_conf 78862168012789997798139999998422------689998999999999760999878665430378-5------- Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG-P------- 68 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G-P------- 68 (206) +|+||-.+..+.+++++.+ ++++.+...+.+ -.+...+...+.+.+.+......++..+.++.. + T Consensus 14 ~iGIdIg~t~i~~~l~D~~-G~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~igI~~~G~v~~~~g~ 92 (143) T 1woq_A 14 LIGIDIGGTGIKGGIVDLK-KGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEAPAAGSPVGVTFPGIIQHGVVH 92 (143) T ss_dssp EEEEEECSSEEEEEEEETT-TTEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTCCCTTCCEEEEESSCEETTEEC T ss_pred EEEEEECCCEEEEEEEECC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEE T ss_conf 9999977655999999899-998999999967899999999999999999998651156764401564023222220688 Q ss_pred ---CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf ---43202466899999999732687110383899 Q gi|254780429|r 69 ---GSFTGVRVSIAVARGISLVLKQPALGVGNLEV 100 (206) Q Consensus 69 ---GSFTGlRigia~akgLa~~~~~pv~gvssle~ 100 (206) ..+.|.| ++.+.+-|....++|++=-+.-|+ T Consensus 93 v~~~~~~~w~-~~~l~~~L~~~~g~PV~i~N~~~~ 126 (143) T 1woq_A 93 SAANVDKSWL-NTDIDALLTARLGRPVEVINRNEA 126 (143) T ss_dssp CCTTSCGGGT-TCBHHHHHHHHHTSCEEEEESTTH T ss_pred EEECCCCCCC-CCHHHHHHHHHHHHCHHCCCCCCH T ss_conf 8631355543-111688998763102011658979 No 77 >>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* (A:198-359) Probab=49.94 E-value=17 Score=16.55 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=46.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC---------CCCCHHHHHHHHH Q ss_conf 6899989999999997609998786654303785432024668999999997326871---------1038389999875 Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPA---------LGVGNLEVLARAH 105 (206) Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv---------~gvssle~la~~~ 105 (206) +.-.+.+.++++++|+++|++++|||.+++-.+ +.|+--.+++-+.....+-. .+.+.+-++.... T Consensus 53 ~~~~~~~~~~~~~~l~~~g~~~~did~~v~Hq~-----~~~~~~~~~~~l~~~~ek~~~~~~~~GN~~sas~~~~L~~~~ 127 (162) T 3h78_A 53 EHASQTLVRIAGEMLAAHELTLDDIDHVICHQP-----NLRILDAVQEQLGIPQHKFAVTVDRLGNMASASTPVTLAMFW 127 (162) T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCSEEEECCS-----CHHHHHHHHHHHTCCGGGBCCCHHHHCBCGGGHHHHHHHHHG T ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCCEEEECCC-----CHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 533210201220134323477555537883377-----799999999980969888266685127338889999999984 Q ss_pred HCCCCCCEEEEE Q ss_conf 214678659998 Q gi|254780429|r 106 LDSHVGRPIMVL 117 (206) Q Consensus 106 ~~~~~~~~i~~~ 117 (206) ...+.+..++.+ T Consensus 128 ~~l~~Gd~vll~ 139 (162) T 3h78_A 128 PDIQPGQRVLVL 139 (162) T ss_dssp GGSCTTCEEEEE T ss_pred CCCCCCCEEEEE T ss_conf 726999989999 No 78 >>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii DSM2661} (A:) Probab=48.98 E-value=9.7 Score=18.17 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=42.4 Q ss_pred HHHHHHHHCC---------CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHH Q ss_conf 9999976099---------9878665430378543202466899999999732687110383-899998 Q gi|254780429|r 45 IDYALKDSRL---------EVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN-LEVLAR 103 (206) Q Consensus 45 i~~lL~~~~~---------~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss-le~la~ 103 (206) +.+.|++.|. ++++.|+|+++=||++-.--.-....+.-.+...++|++|++- +++|+. T Consensus 15 ~~~~l~~~g~~~~~~~~~~~l~~~dgivi~GG~~~~~~~~~~~~~li~~~~~~~~PilGiC~G~Q~l~~ 83 (186) T 2ywj_A 15 HEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGLLEKIKNSNLPILGTCAGMVLLSK 83 (186) T ss_dssp HHHHHHHTTSEEEEECSGGGGTTCSEEEECCSCHHHHHHHHHHTTHHHHHHTCCCCEEEETHHHHHHSS T ss_pred HHHHHHHCCCCEEEECCHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHH T ss_conf 999999879939998898995077868988999851221111210456775079838987134677777 No 79 >>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural genomics, structural genomics consortium; HET: COA; 2.00A {Homo sapiens} (A:1-443) Probab=45.10 E-value=12 Score=17.60 Aligned_cols=69 Identities=6% Similarity=-0.054 Sum_probs=39.7 Q ss_pred EEEEEECC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCCCCCC Q ss_conf 99998422-68999899999999976099987866543037854320246689999999973--26871103 Q gi|254780429|r 27 GSYFKNLG-RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLV--LKQPALGV 95 (206) Q Consensus 27 ~~~~~~~~-r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~--~~~pv~gv 95 (206) .++.+..+ ..-.+.-..+.+++|+++|++++|||.++++.--+-+.-=-.+.-+++-|... ..++++.+ T Consensus 62 ~~R~~~~~~e~~~~la~~Aa~~aL~~ag~~~~dIdllI~~t~t~~~~~p~~a~~v~~~Lgl~~a~~~~~~~~ 133 (443) T 2p8u_A 62 AKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDT 133 (443) T ss_dssp CEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEEECSCCSCSSSCHHHHHGGGTTTTTCCCCBCCEE T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC T ss_conf 378848899899999999999999984999899999999927888777538999998724467776433054 No 80 >>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} (A:) Probab=44.71 E-value=19 Score=16.28 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=39.1 Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHH Q ss_conf 878665430378543202466899999999732687110383-89999875 Q gi|254780429|r 56 VSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN-LEVLARAH 105 (206) Q Consensus 56 ~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss-le~la~~~ 105 (206) +...|+|.++-||++-..-.--.....-.....++|++||+- +++|+... T Consensus 52 ~~~~dgiii~GG~~~~~~~~~~~~~~~~~~~~~~~PiLGIC~G~Qll~~a~ 102 (212) T 2a9v_A 52 LDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHF 102 (212) T ss_dssp GTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHT T ss_pred HHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEC T ss_conf 846890798357655420332124567776515832899860755654312 No 81 >>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase, transferase; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3gwe_A (A:204-365) Probab=44.46 E-value=14 Score=17.03 Aligned_cols=50 Identities=12% Similarity=-0.025 Sum_probs=37.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 8999899999999976099987866543037854320246689999999973268 Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQ 90 (206) Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~ 90 (206) .-.......++++++++|++++|||.+++-.+ +.++--.+++.|...... T Consensus 60 ~~~~~~~~~~~~~l~~~g~~~~did~~~~hq~-----~~~~~~~~~~~lg~~~e~ 109 (162) T 3gwa_A 60 FSLAEVPRAADRLLALAGEPRENIDCFVLHQA-----NRFMLDALRKKMKIPEHK 109 (162) T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCSEEEECCC-----CHHHHHHHHHHHTCCGGG T ss_pred HHHHHHHCCCCCHHHHCCCCCCCCEEEEECCC-----CHHHHHHHHHHHCCCHHH T ss_conf 44432101011002204875543338872467-----799999999981969899 No 82 >>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} (A:) Probab=44.06 E-value=21 Score=15.96 Aligned_cols=113 Identities=11% Similarity=-0.001 Sum_probs=60.1 Q ss_pred EEEEECCCHHHEEEEEE-----C-CC-----CEEEEEEEEECC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHC-CCCCC Q ss_conf 78862168012789997-----7-98-----139999998422-689998999999999760999878665430-37854 Q gi|254780429|r 3 VLALDTTGADCSVAIYD-----S-HA-----GRILGSYFKNLG-RGHAEHLMPAIDYALKDSRLEVSQVDRVVT-ALGPG 69 (206) Q Consensus 3 iLaIdTs~~~~sval~~-----~-~~-----~~~~~~~~~~~~-r~hs~~L~~~i~~lL~~~~~~~~~id~iav-~~GPG 69 (206) |++|.+..+...+..-+ + .. ..-+.++..... ..-.+.-...++++|+++++++++||.+++ +.-|. T Consensus 5 I~~ig~~lP~~~v~~~~~~~~~~~~~~~~~~~~gi~~r~~~~~~e~~~~la~~A~~~~L~~~gl~~~~Id~li~~~~~~~ 84 (317) T 1hnj_A 5 IIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSAT 84 (317) T ss_dssp EEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCS T ss_pred EEEEEEECCCCEECHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC T ss_conf 99999988996175999998719998999983096699984899999999999999998653356010547998015866 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHH--HHHHHHCCCCCCEEEEE Q ss_conf 320246689999999973268711038-----3899--99875214678659998 Q gi|254780429|r 70 SFTGVRVSIAVARGISLVLKQPALGVG-----NLEV--LARAHLDSHVGRPIMVL 117 (206) Q Consensus 70 SFTGlRigia~akgLa~~~~~pv~gvs-----sle~--la~~~~~~~~~~~i~~~ 117 (206) .+.+.-...... +....++|.+-+. .+.+ +|.+.........++++ T Consensus 85 ~~~~~~a~~v~~--~~~~~~~~~~~i~~~C~g~~~al~~a~~~i~~g~~~~~lvv 137 (317) T 1hnj_A 85 HAFPSAACQIQS--MLGIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVV 137 (317) T ss_dssp CSSSCHHHHHHH--HHTCCSSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEE T ss_pred CCCCCHHHHHHH--HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 654368999999--85799823665245686899999999877637976669999 No 83 >>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} (A:) Probab=43.67 E-value=13 Score=17.32 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=39.5 Q ss_pred HHHHHHHHHCCC---------HHHHHHHHCCCCCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCH-HHHHHH Q ss_conf 999999760999---------8786654303785432024---66899999999732687110383-899998 Q gi|254780429|r 44 AIDYALKDSRLE---------VSQVDRVVTALGPGSFTGV---RVSIAVARGISLVLKQPALGVGN-LEVLAR 103 (206) Q Consensus 44 ~i~~lL~~~~~~---------~~~id~iav~~GPGSFTGl---Rigia~akgLa~~~~~pv~gvss-le~la~ 103 (206) .+.+.|++.|.. +++.|.|.++=||++.... +.+..-..-.+...++|++|++- +++|+. T Consensus 15 ~~~~~l~~~G~~v~~~~~~~~l~~~Dgiii~GGp~~~~~~~~~~~~~~~~i~~~~~~~~PilGiC~G~Q~l~~ 87 (196) T 2nv0_A 15 EHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAK 87 (196) T ss_dssp HHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSB T ss_pred HHHHHHHHCCCCEEEECCHHHHHHCCEEEECCCCCHHHHHHHHHCCCCCHHHHHCCCCCEEEEECCCHHHHHH T ss_conf 9999999879949998998998208879986987279999753220010223102468546874467598863 No 84 >>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A {Medicago sativa} (A:15-389) Probab=43.09 E-value=22 Score=15.87 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC-CCHHH Q ss_conf 99899999999976099987866543037854-32024 Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPG-SFTGV 74 (206) Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPG-SFTGl 74 (206) ++.-..+++++|+++++++++||.|.++.--+ -+-+. T Consensus 89 ~~la~~Aa~~aL~~~g~~~~~Id~li~~t~t~~~~~~~ 126 (375) T 1i88_A 89 PRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGA 126 (375) T ss_dssp HHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCCSSCH T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCH T ss_conf 99999999999987399989999999985699987768 No 85 >>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, acetylation, ATP-binding, calmodulin-binding, chaperone, cytoplasm; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* (A:1-38,A:137-233,A:315-399) Probab=43.07 E-value=22 Score=15.87 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=73.5 Q ss_pred CC-EEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHH-HHHH Q ss_conf 92-788621680127899977981399999984226899989999999997609998786654303785432024-6689 Q gi|254780429|r 1 MI-VLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGV-RVSI 78 (206) Q Consensus 1 M~-iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGl-Rigi 78 (206) |- +++||--|.+++||.+.+++-+++... . .....++.++.+++++ |.+||.. |-.+ T Consensus 1 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~---~-----------------~~~~~p~~v~~~vitV-P~~~t~~qr~a~ 59 (220) T 3d2f_A 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNE---V-----------------SNRSTPSNITDVCIAV-PPWYTEEQRYNI 59 (220) T ss_dssp -CCCEEEECCSSEEEEEEEETTEEEEECCT---T-----------------SCSSEECCCCEEEEEE-CTTCCHHHHHHH T ss_pred CCCEEEEECCCCCEEEEEEECCEEEEEECC---C-----------------CCCEECECCCEEEEEE-CCCCCHHHHHHH T ss_conf 997599993722689999999975899869---9-----------------9903167987599998-798998999999 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC-----CCEEEEEECCCCCEEEEEEEEECC Q ss_conf 99999997326871103838999987521467-----865999850871417999996178 Q gi|254780429|r 79 AVARGISLVLKQPALGVGNLEVLARAHLDSHV-----GRPIMVLVSLFHQKVCCQKFSLDG 134 (206) Q Consensus 79 a~akgLa~~~~~pv~gvssle~la~~~~~~~~-----~~~i~~~idArr~~~y~~~~~~~g 134 (206) --|--+|-.....++--++-.++++....... ......+.|-+-+-.-+...+..+ T Consensus 60 ~~aa~~AG~~~~~li~ep~Aaa~~~g~~~~~~~~~~~~~~~~~v~D~Gggt~dvsv~~~~~ 120 (220) T 3d2f_A 60 ADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKK 120 (220) T ss_dssp HHHHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEET T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEEEECC T ss_conf 9999977998047764637889998644013455666752999998588569999999718 No 86 >>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} (A:) Probab=43.04 E-value=20 Score=16.14 Aligned_cols=63 Identities=16% Similarity=0.045 Sum_probs=42.5 Q ss_pred HHHHHHHHHHHCCC---------HHHHHHHHCCCCCCCCHHHH----HHHHHHHHHHHHCCCCCCCCCH-HHHHHHH Q ss_conf 99999999760999---------87866543037854320246----6899999999732687110383-8999987 Q gi|254780429|r 42 MPAIDYALKDSRLE---------VSQVDRVVTALGPGSFTGVR----VSIAVARGISLVLKQPALGVGN-LEVLARA 104 (206) Q Consensus 42 ~~~i~~lL~~~~~~---------~~~id~iav~~GPGSFTGlR----igia~akgLa~~~~~pv~gvss-le~la~~ 104 (206) ...+.++|++.|.. +++.|+|.++=||++..... -+...+...+...++|++|++- +++|+.. T Consensus 14 ~~~~~~~l~~~g~~v~~~~~~~~l~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~PilGiC~G~Q~L~~~ 90 (191) T 2ywd_A 14 FREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE 90 (191) T ss_dssp HHHHHHHHHTTTCCCEEECSGGGGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECHHHHHHHHC T ss_conf 99999999987996999899899615585797697659999873430010120000004541589973434445420 No 87 >>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} (A:327-365,A:505-557,A:584-636,A:782-854) Probab=41.93 E-value=15 Score=16.90 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=24.4 Q ss_pred CCCCCCHHHHH-H-----HHHHHH-HH-HHCCCCCCCCCHHHHHH Q ss_conf 78543202466-8-----999999-99-73268711038389999 Q gi|254780429|r 66 LGPGSFTGVRV-S-----IAVARG-IS-LVLKQPALGVGNLEVLA 102 (206) Q Consensus 66 ~GPGSFTGlRi-g-----ia~akg-La-~~~~~pv~gvssle~la 102 (206) -||| |||+|- | -+++|. |+ +.+.+|+-..+..+.+. T Consensus 14 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~ip~~~~~~~~~l~ 57 (218) T 3ihp_A 14 FGPG-YTGIRNLGNSCYLNSVVQVLFSIMQLPVPMDAALNKEELL 57 (218) T ss_dssp CSTT-CCCBCCCSSCHHHHHHHHHHTTEEEECCCGGGCTTHHHHH T ss_pred CCCC-CCCCCCCCCCHHHHHHHHHHHCCEECCCCCCCEEEEEEEE T ss_conf 7899-7999879966699999999984300032213347766664 No 88 >>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} (A:) Probab=41.68 E-value=6.5 Score=19.31 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=25.6 Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCCCCHHH Q ss_conf 9999997609998786654303785432024 Q gi|254780429|r 44 AIDYALKDSRLEVSQVDRVVTALGPGSFTGV 74 (206) Q Consensus 44 ~i~~lL~~~~~~~~~id~iav~~GPGSFTGl 74 (206) -+.|++++-++....-..+=++.+||+||=. T Consensus 12 KL~Ei~~~f~i~~~~~~vvDLGaaPGgwsq~ 42 (191) T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQV 42 (191) T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHH T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCEEE T ss_conf 9999999838667998899955589701577 No 89 >>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A (A:) Probab=41.50 E-value=23 Score=15.71 Aligned_cols=40 Identities=20% Similarity=0.120 Sum_probs=28.6 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCCCCHHHHH Q ss_conf 99989999999997609998786654303-78543202466 Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTA-LGPGSFTGVRV 76 (206) Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~-~GPGSFTGlRi 76 (206) .++.-..+.+++|++++++++|||.|.++ ..|-.+.+.-. T Consensus 98 ~~~la~~Aa~~aL~~a~~~~~dId~li~~t~t~~~~~~~~a 138 (387) T 3a5r_A 98 VAELGKEAALKAIKEWGQPKSKITHLIVCCLAGVDMPGADY 138 (387) T ss_dssp HHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCEESCHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHH T ss_conf 99999999999999839998898499997778998887899 No 90 >>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} (A:1-180) Probab=40.19 E-value=20 Score=16.11 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=44.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCH-----HHH--HHHHHHC Q ss_conf 8999899999999976099987866543037854320-2466899999999732687110383-----899--9987521 Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFT-GVRVSIAVARGISLVLKQPALGVGN-----LEV--LARAHLD 107 (206) Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFT-GlRigia~akgLa~~~~~pv~gvss-----le~--la~~~~~ 107 (206) .-.+.....+.++|+++|+++++||.++++.--+-++ +.-... ++......+++.+.|+. +.+ +|.+... T Consensus 60 ~~~~la~~A~~~aL~~~gi~~~~Id~vi~~~~~~~~~~~~~a~~--v~~~~g~~~~~~~~v~~~C~sg~~al~~A~~~i~ 137 (180) T 1u6e_A 60 SAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPM--VAASLGAKGILGFDLSAGAAGFGYALGAAADMIR 137 (180) T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCCCSSSCHHHH--HHHHHTCTTSEEEEEECGGGHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHH--HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC T ss_conf 99999999999999744567411436899653466568627765--4432046632111210221231777888754100 Q ss_pred CCCCCEEEEE Q ss_conf 4678659998 Q gi|254780429|r 108 SHVGRPIMVL 117 (206) Q Consensus 108 ~~~~~~i~~~ 117 (206) ......++++ T Consensus 138 ~g~~~~~Lvv 147 (180) T 1u6e_A 138 GGGAATMLVV 147 (180) T ss_dssp HTSCSSEEEE T ss_pred CCCCCCEEEE T ss_conf 3564224886 No 91 >>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} (A:) Probab=40.05 E-value=14 Score=17.05 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=38.0 Q ss_pred HHHHHHHHHHHHHHHHCCCH---HHHHHHHCCCCCC-----------------------CCHHHHHHHHHHHHHHHHCCC Q ss_conf 99989999999997609998---7866543037854-----------------------320246689999999973268 Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEV---SQVDRVVTALGPG-----------------------SFTGVRVSIAVARGISLVLKQ 90 (206) Q Consensus 37 hs~~L~~~i~~lL~~~~~~~---~~id~iav~~GPG-----------------------SFTGlRigia~akgLa~~~~~ 90 (206) +.......+.+.|++.|... .+.+.......++ -+++.+.|+.+=-|+|+++++ T Consensus 25 ~~~~~~~~i~~~l~~~g~~~~~p~~~~~~~~~~~~~~~~~~~i~~~d~~~i~~aD~vIa~l~~~d~Gt~~ElG~A~a~gK 104 (165) T 2khz_A 25 EDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGK 104 (165) T ss_dssp HHHHHHHHHHHHHHHHSEESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECSSCCHHHHHHHHHHHHTCS T ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCC T ss_conf 68999999999999829631001576003230333457789999999998851999999778998447999999998798 Q ss_pred CCCCCCH Q ss_conf 7110383 Q gi|254780429|r 91 PALGVGN 97 (206) Q Consensus 91 pv~gvss 97 (206) |++.+.. T Consensus 105 Pvi~l~~ 111 (165) T 2khz_A 105 PILCLFR 111 (165) T ss_dssp SEEEEEC T ss_pred EEEEEEC T ss_conf 2999964 No 92 >>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type III, transferase; 1.90A {Marchantia polymorpha} (A:31-413) Probab=38.63 E-value=24 Score=15.60 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCHHH Q ss_conf 99899999999976099987866543037-85432024 Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSFTGV 74 (206) Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSFTGl 74 (206) .+.-.....++|+++++++++||.|.++. .|....+. T Consensus 91 ~~ma~~Aa~~aL~~ag~~~~~Id~ii~~t~t~~~~~~~ 128 (383) T 2p0u_A 91 PKLAKEASMNAIKEWGRPKSEITHIVMATTSGVNMPGA 128 (383) T ss_dssp HHHHHHHHHHHHHHHTSCGGGCCEEEEEESSCCCBSCH T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCH T ss_conf 99999999999998599989998799995089877761 No 93 >>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} (A:1-154,A:358-373) Probab=38.55 E-value=7.5 Score=18.89 Aligned_cols=63 Identities=6% Similarity=-0.044 Sum_probs=32.0 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---HHHHHHHHHHHHHHHHHC-CCHHHHHHHHCCC Q ss_conf 788621680127899977981399999984226---899989999999997609-9987866543037 Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---GHAEHLMPAIDYALKDSR-LEVSQVDRVVTAL 66 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---~hs~~L~~~i~~lL~~~~-~~~~~id~iav~~ 66 (206) +++||-....+.+++++.+ ++++.+.....+. .....+...+++++++.. ....++..++++. T Consensus 31 ~igiDIG~t~i~~~l~d~~-g~il~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~i~~igi~~ 97 (170) T 2q2r_A 31 TFVGDVGGTSARMGFVREG-KNDSVHACVTRYSMKRKDITEIIEFFNEIIELMPASVMKRVKAGVINV 97 (170) T ss_dssp EEEEEECSSEEEEEEEEEC-GGGCEEEEEEEEECTTCBGGGHHHHHHHHHHHSCHHHHTTEEEEEEEE T ss_pred EEEEEECCHHHHHEEEECC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 8999988053101789889-982778898522678899889999999999999873488878799994 No 94 >>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} (A:1-136,A:711-717) Probab=38.02 E-value=11 Score=17.85 Aligned_cols=61 Identities=8% Similarity=-0.050 Sum_probs=40.5 Q ss_pred CCEEEEECCCHH--HEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC Q ss_conf 927886216801--27899977981399999984226899989999999997609998786654303785 Q gi|254780429|r 1 MIVLALDTTGAD--CSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 (206) Q Consensus 1 M~iLaIdTs~~~--~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP 68 (206) |+|-.|-|++.. .+.-++..++..++......... ..+.+.+++.++++++||.|.++-+= T Consensus 1 mki~~lg~~~~~g~~n~~li~~~~~~iLiD~G~~~~~-------~~~~~~l~~~~~~~~~i~~IilTH~H 63 (143) T 2i7x_A 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSK-------VSYEQCIKYWEKVIPEIDVIILSQPT 63 (143) T ss_dssp CCEEEEECCSSSSSCCCEEEEETTEEEEECCCCCTTT-------SCHHHHHHHHHTTGGGCCEEECCCSS T ss_pred CEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCC-------CCHHHHHHHHHCCCCCCCEEEECCCC T ss_conf 9589998248998455799998996999979998776-------66434012231166668889976897 No 95 >>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysis, enzyme stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} (A:) Probab=36.52 E-value=28 Score=15.21 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=37.2 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCH Q ss_conf 927886216801278999779813999999842268999899999999976099987866543037854320 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFT 72 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFT 72 (206) |.++-=+.+.+...++++... | .+.-.+.|+.-..+.|++.|+...+++.+-| ||+|- T Consensus 1 M~~~~~~~~~~~~riaIV~s~---------f--n~~i~~~ll~ga~~~L~~~gv~~~~i~~~~V---PGa~E 58 (154) T 1hqk_A 1 MQIYEGKLTAEGLRFGIVASR---------F--NHALVDRLVEGAIDCIVRHGGREEDITLVRV---PGSWE 58 (154) T ss_dssp CEEECCCSCCTTCCEEEEEEC---------T--THHHHHHHHHHHHHHHHHTTCCGGGEEEEEE---SSGGG T ss_pred CCEEECCCCCCCCEEEEEECC---------C--CHHHHHHHHHHHHHHHHHCCCCHHCEEEEEC---CCHHH T ss_conf 946856427889889999810---------7--5999999999999999985998201589989---97889 No 96 >>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} (A:) Probab=35.70 E-value=9.3 Score=18.27 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=22.3 Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCCCCHHH Q ss_conf 9999997609998786654303785432024 Q gi|254780429|r 44 AIDYALKDSRLEVSQVDRVVTALGPGSFTGV 74 (206) Q Consensus 44 ~i~~lL~~~~~~~~~id~iav~~GPGSFTGl 74 (206) -+.+++.+.++-...-..+=++.|||+||-. T Consensus 9 KL~e~~~~~~~~~pg~~VLDlg~gpGg~t~~ 39 (180) T 1ej0_A 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQY 39 (180) T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHH T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCHHHH T ss_conf 9999999728467998899955558827999 No 97 >>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A (A:1-170) Probab=35.49 E-value=29 Score=15.11 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=41.1 Q ss_pred EEEEECCHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 9998422689-99899999999976099987866543037854320246689999999973268711038 Q gi|254780429|r 28 SYFKNLGRGH-AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG 96 (206) Q Consensus 28 ~~~~~~~r~h-s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs 96 (206) ++....+..+ .+.-...++++|+++++++++||.+.++.=-+-.+.--.+..+++.+.. .+++...++ T Consensus 41 ~r~~~~~~e~~~~la~~A~~~~L~~~~~~~~~Id~li~~s~~~~~~~~~~a~~v~~~lg~-~~~~~~~v~ 109 (170) T 1zow_A 41 ERHWADDDQDTSDLAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTVANMLQERLGT-GKVASMDQL 109 (170) T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSCSCSSSCHHHHHHHHHTC-CSCCEEEEE T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC-CCCCCCEEC T ss_conf 899848998999999999997776541262102189872343000222122333112233-434331121 No 98 >>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis H37RV} (A:) Probab=35.27 E-value=29 Score=15.09 Aligned_cols=36 Identities=14% Similarity=0.016 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCHH Q ss_conf 99899999999976099987866543037-8543202 Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSFTG 73 (206) Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSFTG 73 (206) ++.-....+++|++++++++|||.+.++. -|....+ T Consensus 114 ~~la~~Aa~~aL~~ag~~~~dId~li~~t~~~~~~~~ 150 (393) T 1ted_A 114 VPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPG 150 (393) T ss_dssp HHHHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSSC T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCH T ss_conf 9999999999998759998899899998878998875 No 99 >>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus HB8} (A:1-168) Probab=34.77 E-value=17 Score=16.66 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=48.3 Q ss_pred EEEEEECCH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH-----H Q ss_conf 999984226-89998999999999760999878665430378-5432024668999999997326871103838-----9 Q gi|254780429|r 27 GSYFKNLGR-GHAEHLMPAIDYALKDSRLEVSQVDRVVTALG-PGSFTGVRVSIAVARGISLVLKQPALGVGNL-----E 99 (206) Q Consensus 27 ~~~~~~~~r-~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G-PGSFTGlRigia~akgLa~~~~~pv~gvssl-----e 99 (206) ..++...+. .-.+.-...++++|+++++++++||.+.++.- |..+..-+..+ .... ...+++.+-++.- . T Consensus 39 ~~r~~~~~~e~~~~la~~Aa~~al~~a~~~~~~Id~li~~t~~~~~~~~~~~~~-~~~~--l~~~~~~~~~~~~C~g~~~ 115 (168) T 1ub7_A 39 KERRVAAEDEYTSDLAFKAVEDLLRRHPGALEGVDAVIVATNTPDALFPDTAAL-VQAR--FGLKAFAYDLLAGXPGWIY 115 (168) T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEEEEECSSCSEEESCHHHH-HHHH--TTCCCEEEEEECSTTHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHCCHHHH-HHHH--HCCCCCCEEHHCCCCHHHH T ss_conf 589988999999999999999999866998655646998537752010307789-9988--5366530212103313678 Q ss_pred H--HHHHHHCCCCCCEEEEE Q ss_conf 9--99875214678659998 Q gi|254780429|r 100 V--LARAHLDSHVGRPIMVL 117 (206) Q Consensus 100 ~--la~~~~~~~~~~~i~~~ 117 (206) + +|...........++++ T Consensus 116 al~~A~~~l~~g~~~~aLvv 135 (168) T 1ub7_A 116 ALAQAHALVEAGLAQKVLAV 135 (168) T ss_dssp HHHHHHHHHHTTSCSEEEEE T ss_pred HHHHHHHHHHCCCCCEEEEE T ss_conf 88876537652995325786 No 100 >>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} (A:) Probab=33.93 E-value=24 Score=15.61 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCC Q ss_conf 99899999999976099987866543037 Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206) Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206) ...-...++++|+++++++++||.+.++. T Consensus 111 ~~la~~Aa~~lL~~~g~~~~~Id~li~~t 139 (465) T 3e1h_A 111 VPLAVEASRKAMAEARLVPAQITHMVSTT 139 (465) T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEEEC T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEC T ss_conf 99999999999997599989989899973 No 101 >>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase; HET: CAA; 2.05A {Gerbera hybrid cultivar} (A:) Probab=33.22 E-value=31 Score=14.87 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC Q ss_conf 9989999999997609998786654303785432 Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF 71 (206) Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF 71 (206) ...-....+++|+++|++++|||.|+++.--+-+ T Consensus 108 ~~la~~Aar~aL~~ag~~~~dId~ii~~t~t~~~ 141 (402) T 1ee0_A 108 PMLGKEAAVKAIDEWGLPKSKITHLIFCTTAGVD 141 (402) T ss_dssp HHHHHHHHHHHHHHHCSCGGGCCEEEEECSSCCE T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCC T ss_conf 9999999999998759998999999998889999 No 102 >>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} (A:1-151) Probab=33.09 E-value=31 Score=14.86 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=36.0 Q ss_pred CCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC Q ss_conf 680127899977981399999984226899989999999997609998786654303785 Q gi|254780429|r 9 TGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 (206) Q Consensus 9 s~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP 68 (206) +....+..++.++++.++....... +.-.+.+.+.+++.++++++|+.|.++=.= T Consensus 18 ~~~~~n~~li~~~~~~iLiD~G~~~-----~~~~~~~~~~l~~~~~~~~~i~~viiTH~H 72 (151) T 2zo4_A 18 PLKTVNLYLLQGAGEVALVDTALGT-----RAARGALELHLAELGLCFQDVKTILLTHHH 72 (151) T ss_dssp TTCEEEEEEEEETTEEEEECCCCSS-----HHHHHHHHHHHHHTTCCGGGCCEEEESCCS T ss_pred CCCCEEEEEEEECCEEEEEECCCCC-----HHHHHHHHHHHHHCCCCCCCEEEEEECCCC T ss_conf 9886799999989989999899997-----789999999999759997670599955778 No 103 >>2v4w_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.7A {Homo sapiens} (A:) Probab=32.81 E-value=24 Score=15.60 Aligned_cols=45 Identities=7% Similarity=-0.119 Sum_probs=30.9 Q ss_pred EEEEEECCH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC Q ss_conf 999984226-899989999999997609998786654303785432 Q gi|254780429|r 27 GSYFKNLGR-GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF 71 (206) Q Consensus 27 ~~~~~~~~r-~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF 71 (206) .+++...+. .-...-..+++++|+++++++++||.+.++.--+-+ T Consensus 43 ~~r~v~~~~E~~~~ma~~Aa~~aL~~agi~p~~Id~Li~~t~s~~~ 88 (460) T 2v4w_A 43 TRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEVGTETIID 88 (460) T ss_dssp CEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGEEEEEEECSCCSC T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCC T ss_conf 7899689999999999999999999859998999999999279887 No 104 >>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} (A:) Probab=32.41 E-value=32 Score=14.79 Aligned_cols=51 Identities=18% Similarity=0.010 Sum_probs=34.3 Q ss_pred CHHHHHHHHCCCCCCCCHHHH-----HHHHHHHHHHHHCCCCCCCCCH-HHHHHHHH Q ss_conf 987866543037854320246-----6899999999732687110383-89999875 Q gi|254780429|r 55 EVSQVDRVVTALGPGSFTGVR-----VSIAVARGISLVLKQPALGVGN-LEVLARAH 105 (206) Q Consensus 55 ~~~~id~iav~~GPGSFTGlR-----igia~akgLa~~~~~pv~gvss-le~la~~~ 105 (206) +..+.|.|.++=||++-+.-. .++-..--.+...++|++||+- +++|+... T Consensus 54 ~~~~~Dgiii~Gg~~~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlLa~~~ 110 (239) T 1o1y_A 54 PLEEYSLVVLLGGYXGAYEEEKYPFLKYEFQLIEEILKKEIPFLGIXLGSQXLAKVL 110 (239) T ss_dssp CGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHT T ss_pred CHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHH T ss_conf 744479899889999877776783229999999999976999999828999999870 No 105 >>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase, transferase; 1.75A {Neurospora crassa} PDB: 3eut_A* 3euq_A* (A:) Probab=32.17 E-value=32 Score=14.76 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCH Q ss_conf 99899999999976099987866543037854320 Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFT 72 (206) Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFT 72 (206) .+.-...+.++|+++++++.+||.+.++.-.+.++ T Consensus 82 ~~la~~Aa~~aL~~ag~~~~~id~li~~t~~~~~~ 116 (379) T 3euo_A 82 VPLAVEASRKAMAEARLVPAQITHMVSTTCTDSAN 116 (379) T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEEECSSCCCS T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCC T ss_conf 99999999999997699967834899940215678 No 106 >>1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} (A:) Probab=31.56 E-value=19 Score=16.27 Aligned_cols=55 Identities=13% Similarity=-0.084 Sum_probs=37.5 Q ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC Q ss_conf 999999976099987866543037854320246689999999973268711038389999875214 Q gi|254780429|r 43 PAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDS 108 (206) Q Consensus 43 ~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvssle~la~~~~~~ 108 (206) .+++.+++..+++.. -.-+=+|+|||++|-- | ...+..+++|..-+.+...+... T Consensus 8 ~~~~~i~~~l~l~~g-~~VLDIGcG~G~lt~~---------l-A~~~~~Vt~id~s~~~~~~a~~~ 62 (252) T 1qyr_A 8 FVIDSIVSAINPQKG-QAMVEIGPGLAALTEP---------V-GERLDQLTVIELDRDLAARLQTH 62 (252) T ss_dssp HHHHHHHHHHCCCTT-CCEEEECCTTTTTHHH---------H-HTTCSCEEEECCCHHHHHHHHTC T ss_pred HHHHHHHHHCCCCCC-CEEEEECCCCHHHHHH---------H-HCCCCCEEEEEECCCHHHHHHHH T ss_conf 999999984389997-9699979986099999---------9-72689659999772267999886 No 107 >>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A (A:37-413) Probab=31.31 E-value=30 Score=14.99 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCCCCHHHHHH Q ss_conf 9989999999997609998786654303-785432024668 Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTA-LGPGSFTGVRVS 77 (206) Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~-~GPGSFTGlRig 77 (206) .+.-....+++|+++++++++||.|.++ ..|..+.+.-.. T Consensus 90 ~~la~~Aa~~aL~~~~~~~~~Id~li~~t~~~~~~~~~~a~ 130 (377) T 1xes_A 90 PRLAKEAAEKAIQEWGQSKSGITHLIFCSTTTPDLPGADFE 130 (377) T ss_dssp HHHHHHHHHHHHHHHCSCGGGCCEEEEEESCCCEESCHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHH T ss_conf 99999999999998298988999999994489866663599 No 108 >>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* (A:1-197) Probab=31.17 E-value=34 Score=14.66 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=43.9 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-----HHH--HHHHHHCCC Q ss_conf 9998999999999760999878665430378543202466899999999732687110383-----899--998752146 Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN-----LEV--LARAHLDSH 109 (206) Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss-----le~--la~~~~~~~ 109 (206) -.+.....++++|+++++++++||.++++.-=+-..+=-.+.-+.+ .....+++.+.++. +.+ +|....... T Consensus 74 ~~~la~~A~~~aL~~~~~~~~~Id~vi~~s~~~~~~~~~~a~~i~~-~lg~~~~~~~~v~~~Cas~~~al~~A~~~i~~g 152 (197) T 3h78_A 74 VSALMVPAARQAIEAAGLLPEDIDLLLVNTLSPDHHDPSQACLIQP-LLGLRHIPVLDIRAQASGLLYGLQMARGQILAG 152 (197) T ss_dssp THHHHHHHHHHHHHHTTCCGGGCCEEEEECSSCSSSBSCHHHHHHH-HHTCCSCCEEEEECGGGHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCCCCHHHHHHHH-HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 9999999999999883999788205898522456654123789887-336898642120124442276665531133248 Q ss_pred CCCEEEEE Q ss_conf 78659998 Q gi|254780429|r 110 VGRPIMVL 117 (206) Q Consensus 110 ~~~~i~~~ 117 (206) ....++++ T Consensus 153 ~~~~vLvv 160 (197) T 3h78_A 153 LARHVLVV 160 (197) T ss_dssp SCSEEEEE T ss_pred CCCCCCCC T ss_conf 84322223 No 109 >>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} (A:1-107,A:275-287) Probab=29.63 E-value=36 Score=14.49 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=34.3 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC Q ss_conf 92788621680127899977981399999984226899989999999997609998786654303785432 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF 71 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF 71 (206) |+.++||--+..+-+++++++ ++.+....+.. +..+.++|++.+++ . .|..|=|.+ T Consensus 20 m~~lGIDiGsT~tK~V~~e~~--~l~f~~f~t~~-------i~~vl~~Lk~~~i~-----~-i~aTGyGa~ 75 (120) T 2ews_A 20 HMKVGIDAGGTLIKIVQEQDN--QRTFKTELTKN-------IDQVVEWLNQQQIE-----K-LCLTGGNAG 75 (120) T ss_dssp -CEEEEEECSSEEEEEEECSS--CEEEEEEEGGG-------HHHHHHHHHTSCCS-----E-EEEESTTHH T ss_pred CEEEEEEECHHHEEEEEEECC--CCEEEEEEHHH-------HHHHHHHHHHHCCC-----E-EEEECCCHH T ss_conf 779999987113999999399--98999860666-------99999999862588-----8-999704801 No 110 >>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide synthase, transferase; HET: COA; 1.60A {Aloe arborescens} PDB: 2d51_A 2d52_A* (A:28-406) Probab=29.16 E-value=30 Score=14.96 Aligned_cols=34 Identities=12% Similarity=-0.055 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCCCC Q ss_conf 9989999999997609998786654303-785432 Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTA-LGPGSF 71 (206) Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~-~GPGSF 71 (206) ...-....+++|+++++++++||.|.++ .-|-.+ T Consensus 89 ~~la~~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~ 123 (379) T 2d3m_A 89 PALGTEAAVKAIEEWGRPKSEITHLVFCTSCGVDM 123 (379) T ss_dssp HHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCEE T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCC T ss_conf 99999999999998399989998789993489878 No 111 >>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} (A:) Probab=28.16 E-value=38 Score=14.33 Aligned_cols=40 Identities=18% Similarity=0.035 Sum_probs=30.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC-CCCCHHH Q ss_conf 689998999999999760999878665430378-5432024 Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG-PGSFTGV 74 (206) Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G-PGSFTGl 74 (206) ..-.+.....++++|++++++++|||.+.++.. |..+.+. T Consensus 58 e~~~~la~~Aa~~aL~~ag~~p~~Id~li~~s~~~~~~~~~ 98 (339) T 1mzj_A 58 ETIQVMGVAASRRALEHAGVDPAEIDLVVVSTMTNFVHTPP 98 (339) T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCCCCSSC T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCC T ss_conf 89999999999999987598957630135301368778952 No 112 >>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} (A:188-229,A:314-341) Probab=27.33 E-value=39 Score=14.23 Aligned_cols=63 Identities=29% Similarity=0.377 Sum_probs=41.8 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC Q ss_conf 9278862168012789997798139999998422689998999999999760999878665430378 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG 67 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G 67 (206) +++|.+|--.-++-++++.-+++.. +.....+-.| .=+.-+++.|+.++++.++|+.|+..=| T Consensus 6 ~~ilVfDlGGGTfDVSil~~~~g~~--~V~at~GD~~--LG~~~~~~~l~da~~~~~~i~~vvlvgg 68 (70) T 1yuw_A 6 RNVLIFDLGGGTFDVSILTIAAGIF--EVKSTAGDTH--LGLDPVEKALRDAKLDKSQIHDIVLVGG 68 (70) T ss_dssp EEEEEEEECSSCEEEEEEEEETTEE--EEEEEEEETT--CSTHHHHHHHHHTTCCGGGCCEEEEESG T ss_pred CEEEEEECCCCEEEEEEEEEECCEE--EEEEECCCCC--CCHHHHHHHHHHCCCCHHHCCEEEEECC T ss_conf 2799998489579999999709889--9999528877--5899999999982999888978999898 No 113 >>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} (A:) Probab=24.67 E-value=36 Score=14.49 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=40.0 Q ss_pred HHHHHHHHHHHCCC---------HHHHHHHHCCCCCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCH-HHHHHHH Q ss_conf 99999999760999---------8786654303785432024---66899999999732687110383-8999987 Q gi|254780429|r 42 MPAIDYALKDSRLE---------VSQVDRVVTALGPGSFTGV---RVSIAVARGISLVLKQPALGVGN-LEVLARA 104 (206) Q Consensus 42 ~~~i~~lL~~~~~~---------~~~id~iav~~GPGSFTGl---Rigia~akgLa~~~~~pv~gvss-le~la~~ 104 (206) ...+.++|++.|.. +++.|+|.++=||++..-- ..+..-.---....++|++|++- ++.|+.. T Consensus 35 ~~~~~~~l~~~G~~~~~~~~~~~l~~~Dgvil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGiC~G~Q~L~~~ 110 (219) T 1q7r_A 35 VREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTXRRLIDRYGLXEPLKQFAAAGKPXFGTCAGLILLAKR 110 (219) T ss_dssp CHHHHHHHHHTTCEEEEECSGGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEHHHHHHHHC T ss_conf 9999999998799699989989982699999899987999988545770999998754699789981305765220 No 114 >>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} (A:) Probab=24.63 E-value=44 Score=13.92 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=36.3 Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCH Q ss_conf 927886216801278999779813999999842268999899999999976099987866543037854320 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFT 72 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFT 72 (206) |.++-=+.+.+...++++... | .+...+.|+.-..+.|++.|....+|+.+-| ||+|- T Consensus 1 m~~~~~~~~~~~~ri~IV~s~---------f--n~~i~~~l~~ga~~~l~~~g~~~~~i~v~~V---PGa~E 58 (154) T 1rvv_A 1 MNIIQGNLVGTGLKIGIVVGR---------F--NDFITSKLLSGAEDALLRHGVDTNDIDVAWV---PGAFE 58 (154) T ss_dssp CEEECCCSCCTTCCEEEEEES---------T--THHHHHHHHHHHHHHHHHTTCCGGGEEEEEE---SSGGG T ss_pred CCEEECCCCCCCCEEEEEEEE---------C--CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE---CCEEC T ss_conf 966735557899889999813---------7--6999999999999999985998657679998---85421 No 115 >>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} (A:) Probab=23.51 E-value=20 Score=16.06 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=24.1 Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCCCCHHH Q ss_conf 9999997609998786654303785432024 Q gi|254780429|r 44 AIDYALKDSRLEVSQVDRVVTALGPGSFTGV 74 (206) Q Consensus 44 ~i~~lL~~~~~~~~~id~iav~~GPGSFTGl 74 (206) -+.|++++-++....-..+=++.+||+||-. T Consensus 9 KL~ei~~~f~l~~~~~~vlDLcaAPGg~t~~ 39 (196) T 2nyu_A 9 KLLEVNERHQILRPGLRVLDCGAAPGAWSQV 39 (196) T ss_dssp HHHHHHHHHCCCCTTCEEEEETCCSCHHHHH T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHH T ss_conf 9999999718566998799964789658999 No 116 >>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} (A:210-336) Probab=23.37 E-value=46 Score=13.76 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=43.2 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 9989999999997609998786654303785432024668999999997326871103838999987 Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARA 104 (206) Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvssle~la~~ 104 (206) .+.+...|++.|++.++++.+|+.++-. =|| ...++..+++|+..++.=++-+.. T Consensus 13 ~e~i~~ai~~~l~~~~l~~~ai~~iasi-E~g-----------l~~~a~~l~~pl~~~~~e~L~~v~ 67 (127) T 3eeq_A 13 MEEIRDGIYKVLERLNLKRERIGIIASI-REE-----------VKKIADEFNVRFRLVNEEEINNFM 67 (127) T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEEES-CTT-----------HHHHHHHHTCEEEECCHHHHHTCC T ss_pred HHHHHHHHHHHHHHCCCCHHHHHEEEEC-CHH-----------HHHHHHHCCCCEEECCHHHHHHCC T ss_conf 7899999999999869997880246842-276-----------899999809977976899996354 No 117 >>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4} (A:) Probab=22.99 E-value=47 Score=13.72 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=37.0 Q ss_pred CCEEEEECCCH--------HHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC Q ss_conf 92788621680--------127899977981399999984226899989999999997609998786654303785 Q gi|254780429|r 1 MIVLALDTTGA--------DCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 (206) Q Consensus 1 M~iLaIdTs~~--------~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP 68 (206) |.|-.+.|... .++.-++..++..++. ..+.. +.+.+.+.+.++++++||+|.++=.= T Consensus 13 m~i~~lg~g~~~~~~~~~~~~~~~li~~~~~~iLi----D~G~~------~~~~~~l~~~~~~~~~id~iiiTH~H 78 (284) T 2p4z_A 13 VEVQVLIENVVFARNFVAEHGLSLLLKKGNKEIVV----DTGQS------ENFIKNCGLMGIDVGRIKKVVLTHGH 78 (284) T ss_dssp CEEEEEECSBCCSTTCCBCSSCEEEEEETTEEEEE----CCCSS------THHHHHHHHTTCCGGGCCEEECCCSC T ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEEECCEEEEE----ECCCC------HHHHHHHHHCCCCHHHCCEEEEECCC T ss_conf 69999982886667866475689999989969999----58999------79999999849986787689990457 No 118 >>3l83_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2, protein structure initiative; 1.50A {Methylobacillus flagellatus} (A:) Probab=22.94 E-value=41 Score=14.09 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=34.4 Q ss_pred CHHHHHHHHCCCCCCCCHHH----HHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHH Q ss_conf 98786654303785432024----66899999999732687110383-89999875 Q gi|254780429|r 55 EVSQVDRVVTALGPGSFTGV----RVSIAVARGISLVLKQPALGVGN-LEVLARAH 105 (206) Q Consensus 55 ~~~~id~iav~~GPGSFTGl----Rigia~akgLa~~~~~pv~gvss-le~la~~~ 105 (206) +..+.|+++++=||++-+-- ..-.... -.+...++|++||+. +++|+... T Consensus 45 ~~~~~DgiIi~GGp~~~~~~~~~~~~~~~li-~~~~~~~~PvLGIC~G~Qlla~al 99 (250) T 3l83_A 45 EIRDCSGLAMMGGPMSANDDLPWMPTLLALI-RDAVAQRVPVIGHCLGGQLLAKAM 99 (250) T ss_dssp CGGGSSEEEECCCSSCTTSCCTTHHHHHHHH-HHHHHTTCCEEEETHHHHHHHHHT T ss_pred CHHHCCEEEEECCCCCCCCCCHHHHHHHHHH-HHHHHCCCCEEEEEHHHHHHHEEC T ss_conf 8645999999099997778786689999999-999986998899864431464435 No 119 >>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum 3D7} (A:) Probab=22.38 E-value=22 Score=15.91 Aligned_cols=29 Identities=10% Similarity=-0.106 Sum_probs=21.2 Q ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCCHH Q ss_conf 99999760999878665430378543202 Q gi|254780429|r 45 IDYALKDSRLEVSQVDRVVTALGPGSFTG 73 (206) Q Consensus 45 i~~lL~~~~~~~~~id~iav~~GPGSFTG 73 (206) +.++++..++....-..+=.+.|||+||- T Consensus 10 L~ei~~~~~~~~~g~~vlDlcaaPGg~s~ 38 (201) T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQ 38 (201) T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHH T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHH T ss_conf 99999984803699879995578967999 No 120 >>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} (A:281-550) Probab=22.33 E-value=48 Score=13.63 Aligned_cols=47 Identities=19% Similarity=0.112 Sum_probs=34.6 Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHH Q ss_conf 87866543037854320246689999999973268711038-38999987 Q gi|254780429|r 56 VSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG-NLEVLARA 104 (206) Q Consensus 56 ~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs-sle~la~~ 104 (206) +.+.|.++++-|||+..-...-..+.+ ++..++|+.||+ -+++|+.. T Consensus 73 l~~~dgivl~ggp~~~~~~~~~~~i~~--~~~~~~PiLGIClG~Q~l~~~ 120 (270) T 1vco_A 73 FRDVSGILVPGGFGVRGIEGKVRAAQY--ARERKIPYLGICLGLQIAVIE 120 (270) T ss_dssp TTTCSCEEECCCCSSTTHHHHHHHHHH--HHHTTCCEEEETHHHHHHHHH T ss_pred HHCCCEEEECCCCCCCCCHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHH T ss_conf 633781783266776760689999998--987471288887678999999 No 121 >>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... (A:1-208,A:383-404) Probab=21.93 E-value=49 Score=13.58 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.5 Q ss_pred CCEEEEECCCHHHEEEEEECCC Q ss_conf 9278862168012789997798 Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHA 22 (206) Q Consensus 1 M~iLaIdTs~~~~sval~~~~~ 22 (206) |.+++||--|.+++||+++++. T Consensus 23 ~~viGIDfGTTns~VA~~~~g~ 44 (230) T 3i33_A 23 MPAIGIDLGTTYSCVGVFQHGK 44 (230) T ss_dssp CCCEEEEECSSEEEEEEEETTE T ss_pred CCEEEEECCCCCEEEEEEECCE T ss_conf 9899999371478999998998 No 122 >>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} (A:) Probab=21.90 E-value=48 Score=13.65 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=45.5 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 9998999999999760999878665430378543202466899999999732687110383899998 Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLAR 103 (206) Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvssle~la~ 103 (206) ..+.|...|.+.|.++++.+.+|++|+...--= .-.....++..+++|+.-++.=++... T Consensus 23 ~~~~i~~~i~~aL~~~~l~~~~i~~iati~~K~-------~E~~L~~~A~~l~~pl~~~~~~eL~~~ 82 (145) T 2w6k_A 23 SAEHLRALLERTLGEHGRSLAELDALASIDGKR-------DEPGLRQLATLLERPVHFLAPAVLHDY 82 (145) T ss_dssp CHHHHHHHHHHHHHHTTCCGGGCCEEEEECSSS-------CCHHHHHHHHHHTSCEEEECHHHHHTT T ss_pred CHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCC-------CCHHHHHHHHHHCCCEEEECHHHHHHH T ss_conf 999999999999998499978852457033137-------989999999991998598589999865 No 123 >>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} (A:) Probab=21.39 E-value=49 Score=13.58 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHHCCCCCCCCCH Q ss_conf 6899999999732687110383 Q gi|254780429|r 76 VSIAVARGISLVLKQPALGVGN 97 (206) Q Consensus 76 igia~akgLa~~~~~pv~gvss 97 (206) .|.++=-|+|+++|+|++++.+ T Consensus 96 ~Gt~~ElG~A~a~gkpv~~~~~ 117 (167) T 1s2d_A 96 DGSAFXIGFMRAMHKPVILVPF 117 (167) T ss_dssp HHHHHHHHHHHHTTCCEEEEEE T ss_pred CCHHHHHHHHHHCCCCEEEEEC T ss_conf 3189999999986994899966 No 124 >>2j01_S 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (S:) Probab=21.17 E-value=46 Score=13.78 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=41.6 Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHH Q ss_conf 78862168012789997798139999998422--689998999999999760999878665430378543202 Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG--RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTG 73 (206) Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~--r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTG 73 (206) -|.+.-|..+.++-+++++.+.+++.-+.... ++....-.-.+.++|.+..+. ..|+.+.+.+|+=-|+| T Consensus 25 RL~V~~Snk~i~aqvid~~~~~~lasasT~e~~~~~~n~~Aa~~vG~~la~r~~~-~gi~~v~fDrg~~~y~g 96 (112) T 2j01_S 25 RLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKGNKTEVARQVGRALAEKALA-LGIKQVAFDRGPYKYHG 96 (112) T ss_dssp EEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCCSCHHHHHHHHHHHHHHHHHH-TSCCCCBCCCSTTCSSS T ss_pred EEEEEEECCEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCHH T ss_conf 6999970781799999879883899861333222465199999999999999998-69988998089972120 No 125 >>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase, viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* (A:1-27,A:80-255) Probab=20.85 E-value=26 Score=15.41 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=11.0 Q ss_pred HHHHHCCCCCCCCHH Q ss_conf 665430378543202 Q gi|254780429|r 59 VDRVVTALGPGSFTG 73 (206) Q Consensus 59 id~iav~~GPGSFTG 73 (206) -..+=+++|||+||- T Consensus 31 ~rVLDlGcgpGg~s~ 45 (203) T 3eld_A 31 GRVLDLGCGRGGWSY 45 (203) T ss_dssp EEEEEETCTTCHHHH T ss_pred CEEEEECCCCCHHHH T ss_conf 838983778964999 No 126 >>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} (A:1-131,A:286-310) Probab=20.59 E-value=52 Score=13.40 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=63.6 Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC---H-- Q ss_conf 278862168012789997798139999998422689----9989999999997609998786654303785432---0-- Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGH----AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF---T-- 72 (206) Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~h----s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF---T-- 72 (206) .+++||-....+.+++++-+ ++++.+.....+..- -+.+...+++++++++.+ +..|.++ .||-. + T Consensus 8 ~~iGVdig~t~i~~~l~dl~-G~il~~~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~---i~gIgia-~pG~vd~~~g~ 82 (156) T 3htv_A 8 VVAGVDXGATHIRFCLRTAE-GETLHCEKKRTAEVIAPGLVSGIGEXIDEQLRRFNAR---CHGLVXG-FPALVSKDKRT 82 (156) T ss_dssp EEEEEEECSSEEEEEEEETT-SCEEEEEEEEHHHHHTTCHHHHHHHHHHHHHHHHTEE---EEEEEEE-ESSCBCTTSSC T ss_pred EEEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCEEEEE-ECCCEECCCCE T ss_conf 99999977656999999299-9899999970888788999999999999999865998---3179997-16417548971 Q ss_pred -------HH--HHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf -------24--668999999997326871103838999987 Q gi|254780429|r 73 -------GV--RVSIAVARGISLVLKQPALGVGNLEVLARA 104 (206) Q Consensus 73 -------Gl--Rigia~akgLa~~~~~pv~gvssle~la~~ 104 (206) .. --++...+-|...+++|++=.+--.+.|.. T Consensus 83 v~~~~~~~~~~w~~~~l~~~L~~~~~~pV~veNDanaaala 123 (156) T 3htv_A 83 IISTPNLPLTAADLYDLADKLENTLNCPVEFSRDVNLQLSW 123 (156) T ss_dssp BCSCCSSSCCHHHHTTHHHHHHHHHTSCEEEEEHHHHHHHH T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHH T ss_conf 98468887532237667999999879887840525555567 No 127 >>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* (A:1-93) Probab=20.49 E-value=30 Score=15.00 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=39.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCH Q ss_conf 22689998999999999760999--878665430378543202466899999999-732687110383 Q gi|254780429|r 33 LGRGHAEHLMPAIDYALKDSRLE--VSQVDRVVTALGPGSFTGVRVSIAVARGIS-LVLKQPALGVGN 97 (206) Q Consensus 33 ~~r~hs~~L~~~i~~lL~~~~~~--~~~id~iav~~GPGSFTGlRigia~akgLa-~~~~~pv~gvss 97 (206) .+...++.+...+.+.+.+.++. .++.|.+.+-=|=|-|. | +++-++ ...++|++||++ T Consensus 8 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~D~vi~iGGDGT~L--~----a~~~~~~~~~~~pv~gin~ 69 (93) T 2i2c_A 8 KGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFL--S----AFHQYEERLDEIAFIGIHT 69 (93) T ss_dssp CCSHHHHHHHHHHHHHHTTSSCEECSSSCSEEEEEESHHHHH--H----HHHHTGGGTTTCEEEEEES T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHH--H----HHHHHHHCCCCCEEEEEEC T ss_conf 989899999999999886659754788998999989729999--9----9998655158974998614 No 128 >>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme structure, ATP-binding, nucleotide-binding; HET: SAM; 1.70A {Yokose virus} (A:71-244) Probab=20.38 E-value=23 Score=15.73 Aligned_cols=48 Identities=6% Similarity=-0.047 Sum_probs=31.0 Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHH Q ss_conf 9999997609998786654303785432024668999999997326-871103838999 Q gi|254780429|r 44 AIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLK-QPALGVGNLEVL 101 (206) Q Consensus 44 ~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~-~pv~gvssle~l 101 (206) .+++++++.+++.. -..+=+++|||+|| +-++...+ ..++||+.-+-+ T Consensus 8 KL~~~~~~~~l~~g-~~VLDlGcG~Gg~~---------~~~a~~~g~~~v~gvd~s~~~ 56 (174) T 3gcz_A 8 KLRWMEERGYVKPT-GIVVDLGCGRGGWS---------YYAASLKNVKKVMAFTLGVQG 56 (174) T ss_dssp HHHHHHHTTSCCCC-EEEEEETCTTCHHH---------HHHHTSTTEEEEEEECCCCTT T ss_pred HHHHHHHHCCCCCC-CEEEECCCCCCCHH---------HHHHHCCCCCEEEEEEECCCC T ss_conf 99999982286758-85887166897289---------999760487468999827875 No 129 >>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure initiative; HET: MSE; 2.15A {Enterococcus faecalis} (A:) Probab=20.32 E-value=53 Score=13.37 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHCCCCCCCCCH Q ss_conf 6899999999732687110383 Q gi|254780429|r 76 VSIAVARGISLVLKQPALGVGN 97 (206) Q Consensus 76 igia~akgLa~~~~~pv~gvss 97 (206) .|.++=-|+|+++|+|++.+.. T Consensus 84 ~Gt~~ElG~A~a~gkpV~~~~~ 105 (162) T 3ehd_A 84 AGVASEIGVAYAKGIPVVALYT 105 (162) T ss_dssp HHHHHHHHHHHHTTCCEEEECC T ss_pred CCHHHHHHHHHHCCCEEEEEEC T ss_conf 7899999999986996999971 No 130 >>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} (A:) Probab=20.18 E-value=49 Score=13.60 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 68999999997326871103838 Q gi|254780429|r 76 VSIAVARGISLVLKQPALGVGNL 98 (206) Q Consensus 76 igia~akgLa~~~~~pv~gvssl 98 (206) .|.++=-|+|+++|+|++++.+- T Consensus 93 ~Gt~~EiG~A~a~gkpvi~~~~d 115 (157) T 1f8y_A 93 VGLGMELGYALSQGKYVLLVIPD 115 (157) T ss_dssp HHHHHHHHHHHHTTCEEEEEECG T ss_pred CCCHHHHHHHHCCCCEEEEEECC T ss_conf 25006544444078489999360 Done!