Query gi|254780429|ref|YP_003064842.1| hypothetical protein CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 206
No_of_seqs 112 out of 2787
Neff 8.5
Searched_HMMs 23785
Date Mon May 30 10:39:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780429.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gel_A Putative GRAM negative 100.0 1.2E-43 0 302.3 16.9 199 1-202 1-221 (231)
2 2a6a_A Hypothetical protein TM 100.0 5.1E-41 2.8E-45 285.3 12.4 191 1-203 13-207 (218)
3 2ivn_A O-sialoglycoprotein end 99.9 9.2E-27 3.9E-31 192.7 13.5 150 1-152 1-165 (330)
4 3eno_A Putative O-sialoglycopr 99.9 6.2E-23 2.6E-27 167.8 12.5 125 1-127 6-143 (334)
5 3en9_A Glycoprotease, O-sialog 99.9 5.7E-21 2.4E-25 155.1 12.8 149 1-152 6-170 (540)
6 1hux_A Activator of (R)-2-hydr 96.8 0.0085 3.6E-07 37.0 8.9 96 1-113 3-98 (270)
7 1hjr_A Holliday junction resol 95.8 0.032 1.3E-06 33.3 7.4 99 2-100 2-106 (158)
8 1saz_A Probable butyrate kinas 94.9 0.21 8.7E-06 28.0 10.1 113 1-117 2-127 (381)
9 3g25_A Glycerol kinase; IDP007 94.9 0.077 3.3E-06 30.8 6.8 68 1-69 4-87 (501)
10 2iir_A Acetate kinase; transfe 93.9 0.35 1.5E-05 26.6 8.4 118 1-120 1-148 (403)
11 2dpn_A Glycerol kinase; thermu 93.9 0.16 6.5E-06 28.8 6.5 64 1-65 1-78 (495)
12 2aa4_A Mannac kinase, putative 93.6 0.079 3.3E-06 30.7 4.5 99 1-104 1-112 (289)
13 3jvp_A Ribulokinase; PSI-II, N 92.9 0.094 4E-06 30.3 4.0 64 3-66 7-94 (572)
14 2zf5_O Glycerol kinase; hypert 92.4 0.35 1.5E-05 26.5 6.5 65 1-66 1-80 (497)
15 3l0q_A Xylulose kinase; xlylul 91.3 0.62 2.6E-05 24.9 6.7 62 3-65 7-81 (554)
16 2d4w_A Glycerol kinase; alpha 91.1 0.57 2.4E-05 25.2 6.3 63 3-66 4-79 (504)
17 3h3n_X Glycerol kinase; ATP-bi 90.8 0.73 3.1E-05 24.5 6.7 63 3-66 7-82 (506)
18 2qm1_A Glucokinase; alpha-beta 90.0 1 4.2E-05 23.6 8.2 100 2-103 7-123 (326)
19 2e2o_A Hexokinase; acetate and 88.9 0.88 3.7E-05 24.0 5.9 97 1-104 2-102 (299)
20 1iv0_A Hypothetical protein; r 88.8 0.19 8.2E-06 28.2 2.4 85 1-93 1-89 (98)
21 2w40_A Glycerol kinase, putati 88.4 0.65 2.7E-05 24.8 4.9 64 1-65 3-82 (503)
22 3djc_A Type III pantothenate k 87.7 0.92 3.8E-05 23.8 5.3 66 2-69 3-69 (266)
23 1vhx_A Putative holliday junct 87.7 0.59 2.5E-05 25.1 4.3 95 1-100 3-105 (150)
24 1z6r_A MLC protein; transcript 86.8 0.52 2.2E-05 25.4 3.7 101 2-104 86-202 (406)
25 2p3r_A Glycerol kinase; glycer 86.5 1.7 7E-05 22.1 6.3 66 3-69 5-84 (510)
26 3ifr_A Carbohydrate kinase, FG 86.4 1.3 5.3E-05 22.9 5.5 63 2-65 8-83 (508)
27 3lma_A Stage V sporulation pro 84.9 0.58 2.4E-05 25.1 3.1 75 36-117 54-135 (347)
28 3fk5_A 3-oxoacyl-synthase III; 84.6 2 8.6E-05 21.6 5.8 83 35-117 59-148 (338)
29 1wl4_A Acetyl-coenzyme A acety 84.5 0.47 2E-05 25.7 2.5 67 37-103 30-101 (397)
30 3i8b_A Xylulose kinase; strain 83.8 1 4.2E-05 23.6 3.9 63 2-65 6-71 (515)
31 3ll3_A Gluconate kinase; xylul 83.8 2 8.5E-05 21.6 5.5 100 1-101 3-137 (504)
32 2wu9_A 3-ketoacyl-COA thiolase 83.0 0.58 2.4E-05 25.1 2.5 61 37-97 55-116 (442)
33 2gup_A ROK family protein; sug 81.6 2.7 0.00011 20.8 5.6 115 1-123 4-131 (292)
34 1z05_A Transcriptional regulat 81.4 2.2 9.4E-05 21.3 5.0 99 2-102 109-222 (429)
35 1ulq_A Putative acetyl-COA ace 81.2 0.69 2.9E-05 24.6 2.3 65 36-104 25-99 (401)
36 2vu1_A Acetyl-COA acetyltransf 80.6 0.61 2.6E-05 25.0 1.8 67 37-103 27-98 (392)
37 2ib8_A Acetyl-COA acetyltransf 79.8 0.76 3.2E-05 24.4 2.1 62 37-98 32-93 (395)
38 3goa_A 3-ketoacyl-COA thiolase 79.4 0.88 3.7E-05 24.0 2.3 60 38-97 28-89 (387)
39 1wdk_C 3-ketoacyl-COA thiolase 79.1 0.4 1.7E-05 26.1 0.5 60 38-97 31-92 (390)
40 2iik_A 3-ketoacyl-COA thiolase 78.9 1.3 5.6E-05 22.8 3.1 55 37-96 55-114 (418)
41 2h3g_X Biosynthetic protein; p 78.3 3.4 0.00014 20.1 5.3 69 2-72 1-71 (268)
42 3hz6_A Xylulokinase; xylulose, 78.2 2.1 8.9E-05 21.5 4.0 63 3-66 7-81 (511)
43 1u0m_A Putative polyketide syn 77.7 2 8.5E-05 21.6 3.8 47 39-86 86-132 (382)
44 2ch5_A NAGK protein; transfera 77.6 3.6 0.00015 20.0 7.2 96 3-100 8-113 (347)
45 2uyt_A Rhamnulokinase; rhamnos 75.6 0.47 2E-05 25.7 0.0 62 3-65 6-80 (489)
46 1nu0_A Hypothetical protein YQ 74.9 1.8 7.4E-05 22.0 2.8 85 2-93 4-92 (138)
47 3oit_A OS07G0271500 protein; t 72.5 3 0.00013 20.4 3.6 80 37-117 96-183 (387)
48 2ap1_A Putative regulator prot 72.3 1.7 7.3E-05 22.0 2.3 101 2-103 25-135 (327)
49 3eo3_A Bifunctional UDP-N-acet 70.8 5.2 0.00022 18.9 10.3 102 1-104 20-137 (333)
50 2a9v_A GMP synthase; NP_394403 70.7 4.8 0.0002 19.2 4.2 49 56-104 52-101 (212)
51 2e1z_A Propionate kinase; TDCD 70.5 5.3 0.00022 18.9 6.5 99 1-101 18-139 (415)
52 1i88_A CHS2, chalcone synthase 69.8 5.5 0.00023 18.8 5.6 79 38-117 103-189 (389)
53 1g99_A Acetate kinase; alpha/b 66.8 6.3 0.00026 18.4 8.6 84 1-84 1-113 (408)
54 1a9x_B Carbamoyl phosphate syn 66.7 2.9 0.00012 20.5 2.5 74 53-127 221-306 (379)
55 1ted_A PKS18; thiolase fold, s 64.2 5 0.00021 19.0 3.3 78 39-117 115-200 (393)
56 2itm_A Xylulose kinase, xylulo 62.1 7.7 0.00032 17.8 6.2 62 2-66 1-75 (484)
57 2h84_A Steely1; thiolase-fold, 60.2 8.2 0.00035 17.6 3.8 79 38-117 96-182 (374)
58 1ee0_A 2-pyrone synthase; poly 60.0 8.3 0.00035 17.6 5.1 48 38-86 108-155 (402)
59 1xes_A Dihydropinosylvin synth 59.7 7.1 0.0003 18.1 3.4 30 38-67 126-155 (413)
60 3e1h_A PKSIIINC, putative unch 59.4 5.5 0.00023 18.8 2.8 53 40-93 113-165 (465)
61 3h78_A PQS biosynthetic enzyme 59.3 8.6 0.00036 17.5 4.7 59 37-96 74-132 (359)
62 3mcp_A Glucokinase; structural 58.2 9 0.00038 17.4 4.8 100 2-103 10-123 (366)
63 1ub7_A 3-oxoacyl-[acyl-carrier 57.1 9.3 0.00039 17.3 3.8 38 35-72 48-86 (322)
64 3a5r_A Benzalacetone synthase; 57.0 9.4 0.00039 17.3 4.4 79 38-117 99-185 (387)
65 3euo_A Type III pentaketide sy 56.6 7 0.00029 18.1 2.9 48 38-86 82-129 (379)
66 3khy_A Propionate kinase; csgi 55.5 9.9 0.00042 17.1 9.3 96 2-101 3-122 (384)
67 3gwa_A 3-oxoacyl-(acyl-carrier 55.4 4.2 0.00018 19.5 1.6 57 37-94 80-137 (365)
68 1ztc_A Hypothetical protein TM 54.7 4.6 0.00019 19.3 1.8 47 13-66 35-81 (221)
69 2d3m_A Pentaketide chromone sy 49.3 12 0.00052 16.5 4.1 28 39-66 117-144 (406)
70 2ebd_A 3-oxoacyl-[acyl-carrier 49.1 12 0.00052 16.5 4.2 35 34-68 47-81 (309)
71 2x3e_A 3-oxoacyl-[acyl-carrier 48.3 13 0.00054 16.4 4.0 36 29-66 45-80 (331)
72 2f82_A HMG-COA synthase; HMGS1 47.3 8.4 0.00035 17.6 2.1 29 38-66 53-81 (450)
73 3kjj_A NMB1025 protein; YJGF p 47.1 13 0.00056 16.3 4.3 61 1-64 9-73 (128)
74 2hoe_A N-acetylglucosamine kin 47.0 13 0.00057 16.3 8.3 120 2-123 88-225 (380)
75 3p4i_A Acetate kinase; structu 46.3 14 0.00058 16.2 7.8 94 1-97 13-118 (392)
76 1zow_A 3-oxoacyl-[acyl-carrier 43.9 15 0.00063 16.0 4.4 59 37-96 51-109 (313)
77 1hqk_A 6,7-dimethyl-8-ribityll 43.6 15 0.00064 15.9 4.3 35 35-72 24-58 (154)
78 2p0u_A Stilbenecarboxylate syn 42.7 13 0.00055 16.3 2.5 32 38-69 121-152 (413)
79 1i1q_B Anthranilate synthase c 42.6 8.6 0.00036 17.5 1.6 46 58-105 47-93 (192)
80 1afw_A 3-ketoacetyl-COA thiola 42.1 13 0.00054 16.4 2.4 59 38-97 36-99 (393)
81 3il6_A 3-oxoacyl-[acyl-carrier 40.7 12 0.00049 16.6 2.0 38 35-72 50-88 (321)
82 3eeq_A Putative cobalamin bios 39.7 17 0.00073 15.5 3.8 13 38-50 104-116 (336)
83 1ejb_A Lumazine synthase; anal 38.6 17 0.00071 15.6 2.6 36 34-72 27-62 (168)
84 1u6e_A 3-oxoacyl-[acyl-carrier 38.6 9.6 0.0004 17.2 1.3 31 37-67 61-91 (335)
85 2p8u_A Hydroxymethylglutaryl-C 36.5 10 0.00043 17.0 1.2 64 3-66 27-102 (478)
86 3fpf_A Mtnas, putative unchara 36.1 20 0.00083 15.2 2.8 49 44-101 110-158 (298)
87 1rvv_A Riboflavin synthase; tr 36.0 20 0.00083 15.2 4.2 58 1-72 1-58 (154)
88 2wge_A 3-oxoacyl-[acyl-carrier 35.3 20 0.00085 15.1 3.3 34 37-70 83-118 (416)
89 1zc6_A Probable N-acetylglucos 35.0 20 0.00086 15.1 9.1 102 1-105 10-118 (305)
90 3il3_A 3-oxoacyl-[acyl-carrier 34.6 21 0.00088 15.0 5.3 59 37-96 58-116 (323)
91 2eq7_C 2-oxoglutarate dehydrog 34.0 15 0.00064 15.9 1.7 25 42-70 3-27 (40)
92 1hnj_A Beta-ketoacyl-acyl carr 33.2 22 0.00092 14.9 3.5 50 37-86 51-100 (317)
93 2v4w_A Hydroxymethylglutaryl-C 32.4 14 0.00057 16.2 1.3 30 37-66 54-83 (460)
94 3led_A 3-oxoacyl-acyl carrier 30.2 25 0.001 14.5 5.4 34 36-69 116-149 (392)
95 2ewc_A Conserved hypothetical 30.0 25 0.001 14.5 2.9 30 35-64 39-68 (126)
96 3ehd_A Uncharacterized conserv 28.2 26 0.0011 14.4 2.1 24 75-98 83-106 (162)
97 3bex_A Type III pantothenate k 28.0 27 0.0011 14.3 3.4 62 2-68 4-67 (249)
98 1zbs_A Hypothetical protein PG 28.0 27 0.0011 14.3 2.5 67 2-74 1-74 (291)
99 3opn_A Putative hemolysin; str 28.0 11 0.00045 16.9 0.1 45 44-97 24-68 (232)
100 3khj_A Inosine-5-monophosphate 27.9 23 0.00097 14.7 1.8 71 32-102 124-223 (361)
101 1ysl_A HMG-COA synthase; thiol 27.9 27 0.0011 14.3 2.4 39 37-76 224-262 (402)
102 2wa2_A Non-structural protein 27.7 9 0.00038 17.4 -0.3 28 46-74 72-99 (276)
103 3k12_A Uncharacterized protein 26.9 28 0.0012 14.2 3.1 31 35-65 36-66 (122)
104 2nli_A Lactate oxidase; flavoe 26.7 20 0.00083 15.2 1.3 10 26-35 136-145 (368)
105 1s2d_A Purine trans deoxyribos 26.6 24 0.001 14.6 1.7 24 74-97 94-117 (167)
106 1p4c_A L(+)-mandelate dehydrog 26.5 22 0.00093 14.8 1.5 11 190-200 344-354 (380)
107 3idf_A USP-like protein; unive 26.3 17 0.00072 15.6 0.9 13 151-163 98-110 (138)
108 1gox_A (S)-2-hydroxy-acid oxid 25.7 23 0.00098 14.7 1.5 14 80-93 216-229 (370)
109 2w6k_A COBE; biosynthetic prot 25.7 29 0.0012 14.0 4.3 58 38-102 24-81 (145)
110 1kz1_A 6,7-dimethyl-8-ribityll 25.4 29 0.0012 14.1 1.9 33 37-72 31-64 (159)
111 3cqy_A Anhydro-N-acetylmuramic 25.3 30 0.0013 14.0 5.5 59 7-65 13-98 (370)
112 1kcz_A Beta-methylaspartase; b 24.1 31 0.0013 13.9 4.6 92 9-105 49-158 (413)
113 3i7t_A RV2704, putative unchar 23.8 32 0.0013 13.8 3.1 32 33-64 40-71 (149)
114 2f62_A Nucleoside 2-deoxyribos 23.5 32 0.0014 13.8 1.9 23 75-97 84-106 (161)
115 3dha_A N-acyl homoserine lacto 23.5 20 0.00083 15.2 0.8 32 44-75 86-124 (254)
116 1kko_A 3-methylaspartate ammon 22.5 34 0.0014 13.7 3.7 86 9-94 49-152 (413)
117 3jzd_A Iron-containing alcohol 22.5 19 0.00078 15.3 0.5 49 62-123 92-140 (358)
118 3h6e_A Carbohydrate kinase, FG 22.4 34 0.0014 13.6 4.1 61 3-66 8-76 (482)
119 2nyu_A Putative ribosomal RNA 22.4 16 0.00066 15.8 0.1 27 46-72 11-37 (196)
120 1ej0_A FTSJ; methyltransferase 21.5 17 0.0007 15.6 0.1 27 47-73 12-38 (180)
121 1woq_A Inorganic polyphosphate 21.4 35 0.0015 13.5 7.0 101 2-103 13-129 (267)
122 3o04_A LMO2201 protein, beta-k 21.4 33 0.0014 13.7 1.6 38 36-73 73-114 (413)
123 1dkg_D Molecular chaperone DNA 21.2 36 0.0015 13.5 4.4 71 59-133 135-208 (383)
124 1mzj_A Beta-ketoacylsynthase I 21.2 36 0.0015 13.5 3.9 33 37-69 60-92 (339)
125 2r2d_A AGR_PTI_140P, Zn-depend 21.1 24 0.001 14.6 0.8 33 44-76 89-128 (276)
126 1pf5_A Hypothetical protein YJ 20.7 37 0.0015 13.4 2.9 37 33-69 48-85 (131)
127 1zwv_A Lipoamide acyltransfera 20.6 33 0.0014 13.7 1.5 25 42-70 11-35 (58)
128 3gcz_A Polyprotein; flavivirus 20.1 15 0.00065 15.9 -0.3 28 46-74 80-107 (282)
No 1
>2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A
Probab=100.00 E-value=1.2e-43 Score=302.28 Aligned_cols=199 Identities=26% Similarity=0.448 Sum_probs=162.6
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 92788621680127899977981399999984226899989999999997609998786654303785432024668999
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAV 80 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~ 80 (206)
|+|||||||++.|||||+++ ++++.+ .+..+|+|++.|+|+|+++|++++++++|||.|+|++|||||||||||+++
T Consensus 1 M~iLaIdTS~~~~sval~~~--~~i~~~-~~~~~r~hs~~L~~~i~~~L~~~~i~~~did~i~v~~GPGSFTGlRig~s~ 77 (231)
T 2gel_A 1 MRILAIDTATEACSVALWNN--GTINAH-FELCPREHTQRILPMVQEILAASGASLNEIDALAFGRGPGSFTGVRIGIGI 77 (231)
T ss_dssp CEEEEEECSSSEEEEEEEET--TEEEEE-EEECCSCCHHHHHHHHHHHHHHTTCCGGGCSEEEEECCSSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCEEEEEEEC--CEEEEE-EEECCHHHHHHHHHHHHHHHHHCHHHHHHHCEEEEECCCCCHHHHHHHHHH
T ss_conf 98999993772719999999--999999-997558999999999999987550212331079997586513758899999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEECCC----CCCCCCCCCHHHHHHHHCC--
Q ss_conf 9999973268711038389999875214678659998508714179999961783----1145110699999884227--
Q gi|254780429|r 81 ARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSLFHQKVCCQKFSLDGV----SCSDPVLLNYEQTRSEVDN-- 154 (206)
Q Consensus 81 akgLa~~~~~pv~gvssle~la~~~~~~~~~~~i~~~idArr~~~y~~~~~~~g~----~~~~~~~~~~~~~~~~~~~-- 154 (206)
||||++++++|++||+||+++|+++.......++++++||||+++|++.|+.+.. ...++.+...+++.+.+..
T Consensus 78 akgla~~~~ip~igvssl~~lA~~~~~~~~~~~i~~~idArr~~~y~~~y~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 157 (231)
T 2gel_A 78 AQGLALGANLPMIGVSTLATMAQGAWRKTGATRVLAAIDARMGEVYWAEYQRDAQGVWQGEETEAVLKPERVGERLKQLS 157 (231)
T ss_dssp HHHHHHTTTCCEEEECHHHHHHHHHHHHHCCSEEEEEEEETTTEEEEEEEEECTTSCEECGGGCEEECHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999974888675276999999866402454321456447882999998648897401145010289999999998508
Q ss_pred CCEEEECCCHHHCCCCCCC---------CCCCCHHHHH-------HCCCCCCCCCCCCCEECCC
Q ss_conf 7759982713314222367---------7745778898-------6388357464874000698
Q gi|254780429|r 155 FEGEIVGSGLSAIRGIEND---------IDHLPMDVLS-------RLGITKSSPFPSPIYLRSP 202 (206)
Q Consensus 155 ~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~a-------~~~~~~~~~~~~PlYlR~P 202 (206)
.+..++|+++..+...... ........++ ..+...+...++|+|||++
T Consensus 158 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~p~a~~l~~la~~~~~~~~~~~~~~~~P~YlR~~ 221 (231)
T 2gel_A 158 GEWATVGTGWSAWPDLAKECGLTLHDGEVSLPAAEDMLPIASQKLAAGETVAVEHAEPVYLRNE 221 (231)
T ss_dssp SCEEEESTHHHHSTHHHHHSCCCEEEEEESSCCHHHHHHHHHHHHHTTCCBCGGGCCCCCC---
T ss_pred CCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCC
T ss_conf 9859991689988999863566547642358799999999999998599988040753305865
No 2
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} SCOP: c.55.1.9 c.55.1.9
Probab=100.00 E-value=5.1e-41 Score=285.31 Aligned_cols=191 Identities=23% Similarity=0.248 Sum_probs=152.2
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 92788621680127899977981399999984226899989999999997609998786654303785432024668999
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAV 80 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~ 80 (206)
|+|||||||++ +||||.+++ + +.+..++.+|+|++.|+|+|+++|++++++++|||.|+|++|||||||||||+++
T Consensus 13 M~iLaiDTS~~-~sval~~~~--~-i~~~~~~~~r~hse~L~~~i~~~L~~~~l~~~did~i~v~~GPGsFTGlRIg~a~ 88 (218)
T 2a6a_A 13 MNVLALDTSQR-IRIGLRKGE--D-LFEISYTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGIGPGGLTGLRVGIAT 88 (218)
T ss_dssp CEEEEEECSSS-EEEEEEETT--E-EEEEEEESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEECCSSCHHHHHHHHHH
T ss_pred CEEEEEECCCC-CEEEEEECC--E-EEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCHHHHHHHHHH
T ss_conf 60777982776-479999899--9-9999832666899999999999999859997886389995689808889899999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEEECC--CCCCCCCCCCHHHHHHHHCCCC--
Q ss_conf 999997326871103838999987521467865999850871417999996178--3114511069999988422777--
Q gi|254780429|r 81 ARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSLFHQKVCCQKFSLDG--VSCSDPVLLNYEQTRSEVDNFE-- 156 (206)
Q Consensus 81 akgLa~~~~~pv~gvssle~la~~~~~~~~~~~i~~~idArr~~~y~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~-- 156 (206)
||||++++++|++||+||+++|.++ ....++++++||||+++|++.|..++ ..+.++.++..+++.+...+..
T Consensus 89 akgla~~~~ipl~~vssl~~la~~~---~~~~~i~v~ida~r~~vy~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (218)
T 2a6a_A 89 VVGLVSPYDIPVAPLNSFEMTAKSC---PADGVVLVARRARKGYHYCAVYLKDKGLNPLKEPSVVSDEELEEITKEFSPK 165 (218)
T ss_dssp HHHHHGGGTCCEEEECHHHHHHHTC---SSCEEEEEEEECSTTEEEEEEEEESSSCEEEEEEEEEEHHHHHHHHHHHCCS
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHC---CCCCCCEEEEHHHCCEEEEEEEECCCCEEEECCCEECCHHHHHHHHHHCCCC
T ss_conf 9999986499855457799999754---3357726879521984999999749982172587664899999999743998
Q ss_pred EEEECCCHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEECCCC
Q ss_conf 59982713314222367774577889863883574648740006987
Q gi|254780429|r 157 GEIVGSGLSAIRGIENDIDHLPMDVLSRLGITKSSPFPSPIYLRSPC 203 (206)
Q Consensus 157 ~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~PlYlR~P~ 203 (206)
..+.++.. .. .... ......+.+.+...++..++|+|+|+|.
T Consensus 166 ~~~~~~~~---~~-~~~l-~~~~~~~~~~~~~~~~~~l~P~Ylr~~~ 207 (218)
T 2a6a_A 166 IVLKDDLL---IS-PAVL-VEESERLFREKKTIHYYEIEPLYLQKSI 207 (218)
T ss_dssp EEEESSCC---CC-HHHH-HHHHHHHHHTTCCBCGGGTTHHHHCC--
T ss_pred EEECCCCC---CC-HHHH-HHHHHHHHHCCCCCCCCCCEECCCCHHH
T ss_conf 89778777---69-9999-9999999985999981408486089789
No 3
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=99.94 E-value=9.2e-27 Score=192.68 Aligned_cols=150 Identities=19% Similarity=0.295 Sum_probs=121.7
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEE------------CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 92788621680127899977981399999984------------226899989999999997609998786654303785
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKN------------LGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~------------~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP 68 (206)
|+||+||||++.+|||+++++ +++.+.... ..|.|++.|+++++++|+++++++++||+|+|++||
T Consensus 1 M~iLgIeTScd~tsvAi~~~~--~il~~~~~~~~~~~GGvvP~~A~r~H~~~l~~~i~~~l~~a~i~~~~id~iavt~gP 78 (330)
T 2ivn_A 1 MLALGIEGTAHTLGIGIVSED--KVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQGP 78 (330)
T ss_dssp CCEEEEECSSSEEEEEEECSS--CEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEEES
T ss_pred CEEEEEECCCHHHEEEEEECC--EEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCC
T ss_conf 909999836440289999899--999998883126779858589999999999999999999849985568668881289
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEE---EEECCCCCCCCCCCCH
Q ss_conf 4320246689999999973268711038389999875214678659998508714179999---9617831145110699
Q gi|254780429|r 69 GSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSLFHQKVCCQK---FSLDGVSCSDPVLLNY 145 (206)
Q Consensus 69 GSFTGlRigia~akgLa~~~~~pv~gvssle~la~~~~~~~~~~~i~~~idArr~~~y~~~---~~~~g~~~~~~~~~~~ 145 (206)
|+|||||||+++||+|++++++|+++|+++|+++.+........+++.++.++..+++... |+.-|...++.....+
T Consensus 79 G~~~~L~vG~~~Ak~la~~~~~P~i~v~Hl~aH~~~~~~~~~~~pl~llvSGGht~ll~~~~~~~~ilg~T~Dda~Gea~ 158 (330)
T 2ivn_A 79 GLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITKMFGVKDPVGLYVSGGNTQVLALEGGRYRVFGETLDIGIGNAI 158 (330)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHGGGGGTCCSCEEEEECSSCEEEEEEETTEEEEEEEBSSSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCHHHHH
T ss_conf 84102699999999999860876376263999998765336776347788268827999837853898886475236789
Q ss_pred HHHHHHH
Q ss_conf 9998842
Q gi|254780429|r 146 EQTRSEV 152 (206)
Q Consensus 146 ~~~~~~~ 152 (206)
|.....+
T Consensus 159 DKvar~L 165 (330)
T 2ivn_A 159 DVFAREL 165 (330)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
T ss_conf 9999866
No 4
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=99.89 E-value=6.2e-23 Score=167.81 Aligned_cols=125 Identities=28% Similarity=0.345 Sum_probs=104.3
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEE------------CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 92788621680127899977981399999984------------226899989999999997609998786654303785
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKN------------LGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~------------~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP 68 (206)
|+||+||||++.+|+|+++++ +++..+... ..|.|.++|.++++++|+++++++++||+|+++.||
T Consensus 6 m~iLgIeTScd~tsvaiv~~~--~il~~~~~~~~~~~GGvvP~~A~r~H~~~l~~~i~~~l~~a~i~~~~id~ia~t~gP 83 (334)
T 3eno_A 6 MIVLGLEGTAHTISCGIIDES--RILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFSMGP 83 (334)
T ss_dssp CEEEEEECSSSEEEEEEEESS--CCCEEEEEECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSS
T ss_pred CEEEEEECCHHHEEEEEEECC--EEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCC
T ss_conf 579999846042089999899--888998887107879888699999999999999999999749864330268843578
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC-CCEEEEEECCCCCEEEE
Q ss_conf 432024668999999997326871103838999987521467-86599985087141799
Q gi|254780429|r 69 GSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHV-GRPIMVLVSLFHQKVCC 127 (206)
Q Consensus 69 GSFTGlRigia~akgLa~~~~~pv~gvssle~la~~~~~~~~-~~~i~~~idArr~~~y~ 127 (206)
|+++++|||+++||+|++++++|+++|+++|+++.+...... ..++..++.....+++.
T Consensus 84 Gl~~~l~vG~~~Ak~la~~~~~Pli~v~HleaHi~~~~~~~~~~~~l~llvSGGht~ll~ 143 (334)
T 3eno_A 84 GLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEIGRRVTGAIDPVMLYVSGGNTQVIA 143 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHHHHTCSSCEEEEESSSCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEE
T ss_conf 732242067999999887426784523518889766441266420047899369569996
No 5
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.86 E-value=5.7e-21 Score=155.08 Aligned_cols=149 Identities=27% Similarity=0.291 Sum_probs=111.0
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEEC------------CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 927886216801278999779813999999842------------26899989999999997609998786654303785
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNL------------GRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~------------~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP 68 (206)
|+||+||||++.+|+|+++++ ++++++..... .|.|.++|.++++++|+++ ++++||+|+|+.||
T Consensus 6 m~vLgIETScddTs~Aiv~~~-~~il~~~~~~~~~~~gGvvPe~A~r~H~~~l~~li~~al~~~--~~~~id~IavT~gP 82 (540)
T 3en9_A 6 MICLGLEGTAEKTGVGIVTSD-GEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVV--DKNEIDLIAFSQGP 82 (540)
T ss_dssp CEEEEEECSSSEEEEEEEETT-SCEEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHS--CGGGCCEEEEEEES
T ss_pred CEEEEEECCCCCEEEEEEECC-CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCEEEEECCC
T ss_conf 379999866666078999689-809998678743898998908999999999999999999758--95458889995799
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC-CCCCCEEEEEECCCCCEEEEE---EEEECCCCCCCCCCCC
Q ss_conf 432024668999999997326871103838999987521-467865999850871417999---9961783114511069
Q gi|254780429|r 69 GSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLD-SHVGRPIMVLVSLFHQKVCCQ---KFSLDGVSCSDPVLLN 144 (206)
Q Consensus 69 GSFTGlRigia~akgLa~~~~~pv~gvssle~la~~~~~-~~~~~~i~~~idArr~~~y~~---~~~~~g~~~~~~~~~~ 144 (206)
|...+|++|+++||+||+++++|++||+++++++.+... .....|+..++..+..+++.- .|+.-|...++.....
T Consensus 83 Gl~g~L~vG~~~Ak~La~~~~iPli~V~HleaH~~a~~~~~~~~~pl~llvSGGht~li~~~~~~~~ilg~T~Dda~Ge~ 162 (540)
T 3en9_A 83 GLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLTTEAEDPLTLYVSGGNTQVIAYVSKKYRVFGETLDIAVGNC 162 (540)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCEEEEEHHHHHHHHHHHHSSCSSCEEEEECSSCEEEEEEETTEEEEEEEBSSSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCHHHHH
T ss_conf 73463899999999999963998156338988674332334566745899837973799983642699876068313789
Q ss_pred HHHHHHHH
Q ss_conf 99998842
Q gi|254780429|r 145 YEQTRSEV 152 (206)
Q Consensus 145 ~~~~~~~~ 152 (206)
+|.....+
T Consensus 163 fDKvAr~L 170 (540)
T 3en9_A 163 LDQFARYV 170 (540)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
T ss_conf 99999864
No 6
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=96.81 E-value=0.0085 Score=37.03 Aligned_cols=96 Identities=9% Similarity=0.048 Sum_probs=65.3
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 92788621680127899977981399999984226899989999999997609998786654303785432024668999
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAV 80 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~ 80 (206)
|.+|+||-=+.++.+++++++ +++++...... +.|.......+.+.|++++.+..+++.++.+- .|+
T Consensus 3 m~~lGID~GsT~tk~vv~de~-~~i~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~tg-~g~---------- 69 (270)
T 1hux_A 3 IYTLGIDVGSTASKCIILKDG-KEIVAKSLVAV-GTGTSGPARSISEVLENAHMKKEDMAFTLATG-YGR---------- 69 (270)
T ss_dssp CEEEEEEECSSEEEEEEEETT-TEEEEEEEEEC-CSSCCHHHHHHHHHHHHHTCCGGGCSEEEEES-TTT----------
T ss_pred CEEEEEEECHHHEEEEEEECC-CEEEEEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CHH----------
T ss_conf 289999948136999999689-94999999735-89847899999999997058755425897347-618----------
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCE
Q ss_conf 999997326871103838999987521467865
Q gi|254780429|r 81 ARGISLVLKQPALGVGNLEVLARAHLDSHVGRP 113 (206)
Q Consensus 81 akgLa~~~~~pv~gvssle~la~~~~~~~~~~~ 113 (206)
....+.|...++.+++++..+....++..
T Consensus 70 ----~~~~~~~~~~v~E~~a~~~ga~~l~~~~~ 98 (270)
T 1hux_A 70 ----NSLEGIADKQMSELSCHAMGASFIWPNVH 98 (270)
T ss_dssp ----TTTTTTCSEEECHHHHHHHHHHHHCTTCC
T ss_pred ----HHHHHHCCCCCCEEEHHHHHHHHHCCCCC
T ss_conf ----77776056885450099999998689999
No 7
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=95.85 E-value=0.032 Score=33.31 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=65.6
Q ss_pred CEEEEECCCHHHEEEEEECCCCEE--EEEE-EEECCHHHHHH---HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHH
Q ss_conf 278862168012789997798139--9999-98422689998---99999999976099987866543037854320246
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRI--LGSY-FKNLGRGHAEH---LMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVR 75 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~--~~~~-~~~~~r~hs~~---L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlR 75 (206)
+||+||-++..+..|+++.++++. +..- .......+.+. |...+.+++++.+.+.--+..+.++..+.+-..+-
T Consensus 2 iILGiDPgl~~tG~avid~~~~~~~~i~~g~i~t~~~~~~~Rl~~I~~~l~~ii~~~~pd~vaiE~~f~~~n~~sa~~l~ 81 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLG 81 (158)
T ss_dssp EEEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHH
T ss_pred EEEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 89998435585689999953987899986689779988799999999999999971397353698988623888999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 6899999999732687110383899
Q gi|254780429|r 76 VSIAVARGISLVLKQPALGVGNLEV 100 (206)
Q Consensus 76 igia~akgLa~~~~~pv~gvssle~ 100 (206)
-.-.++.-.+...++|++.++--++
T Consensus 82 ~a~G~i~~~~~~~~i~i~~~~P~~v 106 (158)
T 1hjr_A 82 QARGVAIVAAVNQELPVFEYAARQV 106 (158)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 9999999999985996013688999
No 8
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=94.93 E-value=0.21 Score=28.02 Aligned_cols=113 Identities=13% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC-
Q ss_conf 92788621680127899977981399999984226----------8999899999999976099987866543037854-
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR----------GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPG- 69 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r----------~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPG- 69 (206)
|+||+|+.-+..+-++|++++ +.+......... .|-+.....+.+.|++.++.+.+++.+++-=|--
T Consensus 2 ~kILvIN~GSSS~K~alf~~~--~~~~~~~i~h~~~~~~~~~~~~d~~~~r~~~i~~~L~~~g~~l~~v~~rvv~GG~~~ 79 (381)
T 1saz_A 2 FRILTINPGSTSTKLSIFEDE--RMVKMQNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFSAFVSRGGLLD 79 (381)
T ss_dssp CEEEEEEECSSEEEEEEEETT--EEEEEEEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEEEEECCSCS
T ss_pred CEEEEECCCCHHHEEEEEECC--CCEEECEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 749998578175623789388--612344214321010444530105889999999999876998351477998089876
Q ss_pred CCH-H-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 320-2-46689999999973268711038389999875214678659998
Q gi|254780429|r 70 SFT-G-VRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVL 117 (206)
Q Consensus 70 SFT-G-lRigia~akgLa~~~~~pv~gvssle~la~~~~~~~~~~~i~~~ 117 (206)
.+. | .++--.+.+.|.. ..|+...+++..+.......+...+++++
T Consensus 80 ~~~~g~~~v~~~~l~~l~~--~apl~~~~nl~~i~a~~~~~~~~~p~~vf 127 (381)
T 1saz_A 80 PIPGGVYLVDGLMIKTLKS--GKNGEHASNLGAIIAHRFSSETGVPAYVV 127 (381)
T ss_dssp CBCSSEEECCHHHHHHHHH--TTTCCCTTHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCCEEEECHHHHHHHHH--CCCCCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 5069718767999999874--67877701489999999857899975886
No 9
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=94.92 E-value=0.077 Score=30.80 Aligned_cols=68 Identities=10% Similarity=0.243 Sum_probs=51.5
Q ss_pred CC--EEEEECCCHHHEEEEEECCCCEEEEEEEEEC-------------CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC-
Q ss_conf 92--7886216801278999779813999999842-------------2689998999999999760999878665430-
Q gi|254780429|r 1 MI--VLALDTTGADCSVAIYDSHAGRILGSYFKNL-------------GRGHAEHLMPAIDYALKDSRLEVSQVDRVVT- 64 (206)
Q Consensus 1 M~--iLaIdTs~~~~sval~~~~~~~~~~~~~~~~-------------~r~hs~~L~~~i~~lL~~~~~~~~~id~iav- 64 (206)
|. +|+||-.|..+.++|++. +++++++...+. +...-+.+...+++++++.+++.++|.+|++
T Consensus 4 M~kyvlgIDiGTss~Ka~l~d~-~g~i~~~~~~~~~~~~~~~g~~Eqd~~~~~~~~~~~i~~~~~~~~~~~~~I~aIgis 82 (501)
T 3g25_A 4 MEKYILSIDQGTTSSRAILFNQ-KGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINENDVRADQIAGIGIT 82 (501)
T ss_dssp CCCEEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEECC-CCCEEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEE
T ss_conf 2727999983110310007859-998999999727713589980888999999999999999998759996557899997
Q ss_pred CCCCC
Q ss_conf 37854
Q gi|254780429|r 65 ALGPG 69 (206)
Q Consensus 65 ~~GPG 69 (206)
+.|.|
T Consensus 83 ~~~~~ 87 (501)
T 3g25_A 83 NQRET 87 (501)
T ss_dssp ECSSC
T ss_pred CCCCC
T ss_conf 78798
No 10
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=93.91 E-value=0.35 Score=26.57 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=66.6
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEE----------------------ECCHHHHHHHHHHHHHHHHHHCC----
Q ss_conf 9278862168012789997798139999998----------------------42268999899999999976099----
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFK----------------------NLGRGHAEHLMPAIDYALKDSRL---- 54 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~----------------------~~~r~hs~~L~~~i~~lL~~~~~---- 54 (206)
|+||.|+.-+..+-++|++.++.+.+.+-.. ..-..|.+.+-..++.+ .+.++
T Consensus 1 MkILviN~GSSS~K~alf~~~~~~~l~~g~~e~ig~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~il~~L-~~~~~~~~~ 79 (403)
T 2iir_A 1 MRVLVINSGSSSIKYQLIEMEGEKVLCKGIAERIGIEGSRLVHRVGDEKHVIERELPDHEEALKLILNTL-VDEKLGVIK 79 (403)
T ss_dssp CEEEEEEEETTEEEEEEEETTTTEEEEEEEEECTTSTTCEEEEEETTEEEEEECCCCSHHHHHHHHHHHH-HCTTTCSCS
T ss_pred CEEEEECCCHHHHEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCC
T ss_conf 9199985783746428897799847888889884599864899938821366215799999999999999-854667447
Q ss_pred CHHHHHHHHCCCCC--CCCHH-HHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 98786654303785--43202-466899999999-73268711038389999875214678659998508
Q gi|254780429|r 55 EVSQVDRVVTALGP--GSFTG-VRVSIAVARGIS-LVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL 120 (206)
Q Consensus 55 ~~~~id~iav~~GP--GSFTG-lRigia~akgLa-~~~~~pv~gvssle~la~~~~~~~~~~~i~~~idA 120 (206)
++++|++|+.=++. .-|++ .+|.-.+.+.|- ...-.|+.--++|..+.......+ +.+-+.+.|.
T Consensus 80 ~~~~i~avghRvVhGG~~~~~~~~i~~~vl~~l~~l~~laPlHnp~~l~~I~~~~~~~p-~~p~vavfDt 148 (403)
T 2iir_A 80 DLKEIDAVGHRVVHGGERFKESVLVDEEVLKAIEEVSPLAPLHNPANLMGIKAAMKLLP-GVPNVAVFDT 148 (403)
T ss_dssp CSTTCCEEEEEESCCTTTCSSCEECCHHHHHHHHHHGGGSTTTHHHHHHHHHHHHHHST-TCCEEEEETT
T ss_pred CHHHHEEEEEECCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC-CCCEEEEECC
T ss_conf 85563057332135777668765188999999997106675568335899999998589-9896999798
No 11
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=93.88 E-value=0.16 Score=28.84 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=48.6
Q ss_pred CC-EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 92-78862168012789997798139999998422-------------6899989999999997609998786654303
Q gi|254780429|r 1 MI-VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTA 65 (206)
Q Consensus 1 M~-iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~ 65 (206)
|. +|+||-.|..+-++|++. +++++++...+.+ ...-+.+...+.+++++++.+..+|.+|.++
T Consensus 1 M~y~lgIDiGTts~Ka~l~d~-~g~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~l~~~~~~~~~I~aIg~s 78 (495)
T 2dpn_A 1 MAFLLALDQGTTSSRAILFTL-EGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLALGIT 78 (495)
T ss_dssp --CEEEEEECSSEEEEEEECT-TSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEEEC-CCCEEEEEEEECCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHCEEEEEEE
T ss_conf 969999974232334448808-899999999745604589993899999999999999999999749984216899998
No 12
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=93.57 E-value=0.079 Score=30.74 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=67.5
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECC-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC--HHH---
Q ss_conf 9278862168012789997798139999998422-6899989999999997609998786654303785432--024---
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLG-RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF--TGV--- 74 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF--TGl--- 74 (206)
|.||+||--...+.+++++. .++++.+...+.. ..+.+.+...|.+++++.. .+++.|.++. ||.. ...
T Consensus 1 m~~igiD~GGT~~~~~l~d~-~G~il~~~~~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~igIa~-~G~v~~~~~~~~ 75 (289)
T 2aa4_A 1 MTTLAIDIGGTKLAAALIGA-DGQIRDRRELPTPASQTPEALRDALSALVSPLQ---AHAQRVAIAS-TGIIRDGSLLAL 75 (289)
T ss_dssp CCEEEEEECSSEEEEEEECT-TCCEEEEEEEECCSSCCHHHHHHHHHHHHTTTG---GGCSEEEEEE-SSEEETTEEECS
T ss_pred CCEEEEEECCCCEEEEEECC-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH---HHCCEEEEEE-CCCEEECCEEEE
T ss_conf 96999998800389999979-996999999978988789999999999999988---6558469970-662121110474
Q ss_pred -------HHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf -------668999999997326871103838999987
Q gi|254780429|r 75 -------RVSIAVARGISLVLKQPALGVGNLEVLARA 104 (206)
Q Consensus 75 -------Rigia~akgLa~~~~~pv~gvssle~la~~ 104 (206)
-.++..++.|....++|++=.+-..+.+..
T Consensus 76 ~~~~~~~~~~~~l~~~l~~~~~~pv~v~nd~~a~~~~ 112 (289)
T 2aa4_A 76 NPHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAWA 112 (289)
T ss_dssp SGGGGGGGTTCCHHHHHHHHHCSCEEEEEHHHHHHHH
T ss_pred CCCCCCHHCCCCHHHHHHHHHCCCEEEECCHHHHHHH
T ss_conf 2534211149946999999879999993658898888
No 13
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans}
Probab=92.86 E-value=0.094 Score=30.25 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=48.0
Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEEC------------------------CHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 7886216801278999779813999999842------------------------2689998999999999760999878
Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNL------------------------GRGHAEHLMPAIDYALKDSRLEVSQ 58 (206)
Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~------------------------~r~hs~~L~~~i~~lL~~~~~~~~~ 58 (206)
+|+||-.|..+-++|++.+.++++++..... +..--+.+...+.+++++++++..+
T Consensus 7 ~LgIDiGTts~Ka~l~D~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Eqd~~~~~~a~~~~i~~~l~~~~~~~~~ 86 (572)
T 3jvp_A 7 TIGVDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKESGVDADD 86 (572)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC---CCSC
T ss_pred EEEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99997246552889998899909999998602343222479888678988277789999999999999999984989888
Q ss_pred HHHHHCCC
Q ss_conf 66543037
Q gi|254780429|r 59 VDRVVTAL 66 (206)
Q Consensus 59 id~iav~~ 66 (206)
|.+|.++.
T Consensus 87 I~aIgis~ 94 (572)
T 3jvp_A 87 VIGIGVDF 94 (572)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEC
T ss_conf 48999856
No 14
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1}
Probab=92.45 E-value=0.35 Score=26.54 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=48.5
Q ss_pred CC--EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 92--78862168012789997798139999998422-------------6899989999999997609998786654303
Q gi|254780429|r 1 MI--VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTA 65 (206)
Q Consensus 1 M~--iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~ 65 (206)
|. +|+||-.|..+-++|++.+ ++++.......+ ..--+.+...+++++++++++.++|.+|+++
T Consensus 1 M~ky~lgIDiGTss~Ka~l~d~~-g~~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~~~~~~~~~~~~~~~I~aI~is 79 (497)
T 2zf5_O 1 MEKFVLSLDEGTTSARAIIFDRE-SNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVT 79 (497)
T ss_dssp CCCEEEEEEECSSEEEEEEECTT-CCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 99389999802535276699588-99999999977622689982899999999999999999999759893127999993
Q ss_pred C
Q ss_conf 7
Q gi|254780429|r 66 L 66 (206)
Q Consensus 66 ~ 66 (206)
-
T Consensus 80 ~ 80 (497)
T 2zf5_O 80 N 80 (497)
T ss_dssp E
T ss_pred C
T ss_conf 5
No 15
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=91.29 E-value=0.62 Score=24.95 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=46.3
Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 78862168012789997798139999998422-------------6899989999999997609998786654303
Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTA 65 (206)
Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~ 65 (206)
+|+||-.|..+-++|++.+ +++++......+ ..--+.+...+++++++++++..+|.+|.++
T Consensus 7 ~lgIDiGTts~Ka~l~d~~-G~i~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~l~~~~~~~~~~~~~I~aIgis 81 (554)
T 3l0q_A 7 FIGVDVGTGSARAGVFDLQ-GRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQADINPIQVKGLGFD 81 (554)
T ss_dssp EEEEEECSSEEEEEEEETT-SCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred EEEEEECCCCEEEEEECCC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEC
T ss_conf 9999814545254588499-98999999856617689994899999999999999999999749997996999988
No 16
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=91.09 E-value=0.57 Score=25.19 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=47.4
Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 78862168012789997798139999998422-------------68999899999999976099987866543037
Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206)
Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206)
+|+||-.|..+-++|++.+ +++++....+.+ ..-=+.+...++++++++++++.+|.+|.++-
T Consensus 4 ~lgID~GTts~Ka~l~d~~-g~i~~~~~~~~~~~~~~~g~~E~d~~~~w~~~~~~i~~~l~~~~~~~~~I~aIgis~ 79 (504)
T 2d4w_A 4 VLAIDQGTTSSRAIVFDHS-GEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDIAAVGITN 79 (504)
T ss_dssp EEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred EEEEEECCCCEEEEEECCC-CCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEC
T ss_conf 9999832313100178598-989999996277145999808999999999999999999997599877868999957
No 17
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=90.84 E-value=0.73 Score=24.47 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=47.0
Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 78862168012789997798139999998422-------------68999899999999976099987866543037
Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206)
Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206)
+|+||-.|...-++|++.+ ++++++...+.+ ..--+.+...+.+++++++++..+|.+|.++-
T Consensus 7 ~lgIDiGTts~Ka~l~d~~-g~~i~~~~~~~~~~~~~~g~~Eqd~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~ 82 (506)
T 3h3n_X 7 VMAIDQGTTSSRAIIFDRN-GKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITN 82 (506)
T ss_dssp EEEEEECSSEEEEEEEETT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred EEEEECCCCCEEEEEECCC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEC
T ss_conf 9999832203100068189-999999998567165899818889999999999999999998599878868999978
No 18
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583}
Probab=89.99 E-value=1 Score=23.58 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=70.9
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECC-----HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC---HH
Q ss_conf 278862168012789997798139999998422-----6899989999999997609998786654303785432---02
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLG-----RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF---TG 73 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-----r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF---TG 73 (206)
+||+||--...+.++|++. .++++.+...... ...-+.+.-.|++++++++....++..|.++. ||.+ +|
T Consensus 7 ~vLgiD~GgT~~~~~l~d~-~G~il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~igi~~-~G~vd~~~~ 84 (326)
T 2qm1_A 7 KIIGIDLGGTTIKFAILTT-DGVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGT-PGSVDIEKG 84 (326)
T ss_dssp EEEEEEECSSEEEEEEEET-TCCEEEEEEEECCCTTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE-SSEEETTTT
T ss_pred EEEEEEECCCEEEEEEECC-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-CCCEECCCC
T ss_conf 5999998734289999939-99799999971798889899999999999999997157656713785224-330506668
Q ss_pred H-------H--HHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 4-------6--6899999999732687110383899998
Q gi|254780429|r 74 V-------R--VSIAVARGISLVLKQPALGVGNLEVLAR 103 (206)
Q Consensus 74 l-------R--igia~akgLa~~~~~pv~gvssle~la~ 103 (206)
. . -.....+-+....++|+.=.+-..+.+.
T Consensus 85 ~i~~~~~l~~~~~~~l~~~l~~~~~~~v~v~ND~~a~a~ 123 (326)
T 2qm1_A 85 TVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAAL 123 (326)
T ss_dssp EEECBGGGTBCSCBCHHHHHHHHHCSCEEEEEHHHHHHH
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHH
T ss_conf 076303567444433899999987998898565889999
No 19
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=88.94 E-value=0.88 Score=23.95 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=59.3
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECC--HHH-HHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCHHHHH
Q ss_conf 9278862168012789997798139999998422--689-99899999999976099987866543037-8543202466
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLG--RGH-AEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSFTGVRV 76 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~--r~h-s~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSFTGlRi 76 (206)
|++|+||--+..+.+++++.+ ++++.+...... ..+ .+.+...|.+++++++.. +++.+.++. ||+.....++
T Consensus 2 m~~iGIDiGgT~~~~~l~d~~-G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~--~~~~~gig~~g~~~~~~~~~ 78 (299)
T 2e2o_A 2 MIIVGVDAGGTKTKAVAYDCE-GNFIGEGSSGPGNYHNVGLTRAIENIKEAVKIAAKG--EADVVGMGVAGLDSKFDWEN 78 (299)
T ss_dssp CCEEEEEECSSCEEEEEECTT-SCEEEEEEESCCCHHHHCHHHHHHHHHHHHHHHHTS--CCSEEEEEETTCCSHHHHHH
T ss_pred CEEEEEEECHHHEEEEEECCC-CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCHHHHHH
T ss_conf 299999937003799999499-989999992789965220999999999999985589--85489870478776023689
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 8999999997326871103838999987
Q gi|254780429|r 77 SIAVARGISLVLKQPALGVGNLEVLARA 104 (206)
Q Consensus 77 gia~akgLa~~~~~pv~gvssle~la~~ 104 (206)
.+-+......|+.-.+....-+..
T Consensus 79 ----~~~l~~~~~~~v~i~nd~~~a~~~ 102 (299)
T 2e2o_A 79 ----FTPLASLIAPKVIIQHDGVIALFA 102 (299)
T ss_dssp ----HHHHHTTSSSEEEEEEHHHHHHHH
T ss_pred ----HHHHHHCCCCCEEEECHHHHHHHH
T ss_conf ----999986038978997429999987
No 20
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=88.79 E-value=0.19 Score=28.20 Aligned_cols=85 Identities=18% Similarity=0.049 Sum_probs=51.4
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC---CCCCHHH-HH
Q ss_conf 9278862168012789997798139999998422689998999999999760999878665430378---5432024-66
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG---PGSFTGV-RV 76 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G---PGSFTGl-Ri 76 (206)
|.|||||--+..+++|+-+.. ..++.-.....+...+..+..+.+++++.+ ++.|+|+.= =|+.+-. +.
T Consensus 1 MriLglD~G~kriGvAisd~~--~~~A~pl~~i~~~~~~~~~~~l~~li~e~~-----i~~iVvGlP~~~dG~~~~~~~~ 73 (98)
T 1iv0_A 1 MRVGALDVGEARIGLAVGEEG--VPLASGRGYLVRKTLEEDVEALLDFVRREG-----LGKLVVGLPLRTDLKESAQAGK 73 (98)
T ss_dssp CCEEEEEESSSEEEEEEECSC--CSSCCCEEEEECCCHHHHHHHHHHHHHHHT-----CCEEEEECCCCCCSSSCCCSST
T ss_pred CCEEEEEECCCEEEEEEECCC--CCEEECEEEEECCCCHHHHHHHHHHHHHHC-----CCEEEECCCCCCCCCCCHHHHH
T ss_conf 929999808998999992599--987817788982585689999999999718-----5749915897789991989999
Q ss_pred HHHHHHHHHHHCCCCCC
Q ss_conf 89999999973268711
Q gi|254780429|r 77 SIAVARGISLVLKQPAL 93 (206)
Q Consensus 77 gia~akgLa~~~~~pv~ 93 (206)
.-.+++-|.. .++|+.
T Consensus 74 v~~f~~~L~~-~~~pv~ 89 (98)
T 1iv0_A 74 VLPLVEALRA-RGVEVE 89 (98)
T ss_dssp THHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHHH-CCCCEE
T ss_conf 9999999863-799999
No 21
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=88.42 E-value=0.65 Score=24.82 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=40.6
Q ss_pred CC-EEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---------HHHHHHH----HHHHHHHHH--HCCCHHHHHHHHC
Q ss_conf 92-788621680127899977981399999984226---------8999899----999999976--0999878665430
Q gi|254780429|r 1 MI-VLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---------GHAEHLM----PAIDYALKD--SRLEVSQVDRVVT 64 (206)
Q Consensus 1 M~-iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---------~hs~~L~----~~i~~lL~~--~~~~~~~id~iav 64 (206)
|+ +|+||-.|..+-+++++.+ ++++++...+.+. ...+.+. ..++++++. .+++..+|.+|.+
T Consensus 3 M~~vlgID~GTss~Ka~l~d~~-g~~i~~~~~~~~~~~~~~G~~Eqd~~~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~i 81 (503)
T 2w40_A 3 MNVILSIDQSTQSTKVFFYDEE-LNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGI 81 (503)
T ss_dssp CEEEEEEEECSSEEEEEEEETT-CCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 6699999851002100078699-989999997067547999838989999999999999999998760488556699998
Q ss_pred C
Q ss_conf 3
Q gi|254780429|r 65 A 65 (206)
Q Consensus 65 ~ 65 (206)
+
T Consensus 82 s 82 (503)
T 2w40_A 82 T 82 (503)
T ss_dssp E
T ss_pred E
T ss_conf 0
No 22
>3djc_A Type III pantothenate kinase; structural genomics, putative transferase, PSI-2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=87.72 E-value=0.92 Score=23.83 Aligned_cols=66 Identities=11% Similarity=0.232 Sum_probs=48.4
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC-CCCCC
Q ss_conf 278862168012789997798139999998422689998999999999760999878665430-37854
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVT-ALGPG 69 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav-~~GPG 69 (206)
|+|+||--+...-.++++++ ++............+..+...++.+++..++...+++.+++ ++.|-
T Consensus 3 M~L~IDiGNT~iK~~l~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~v~~ssVvp~ 69 (266)
T 3djc_A 3 LILCIDVGNSHIYGGVFDGD--EIKLRFRHTSKVSTSDELGIFLKSVLRENNCSPETIRKIAICSVVPQ 69 (266)
T ss_dssp CEEEEEECSSEEEEEEEETT--EEEEEEEEECSCCCHHHHHHHHHHHHHTTTCCGGGCCEEEEEESCHH
T ss_pred EEEEEEECCCCCEEEEEECC--EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCEEEEEEECHH
T ss_conf 69999986771099999899--99999971687678889999999998764897321555799985568
No 23
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=87.72 E-value=0.59 Score=25.08 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=61.4
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC--CC-CCCHHH-HH
Q ss_conf 927886216801278999779813999999842268999899999999976099987866543037--85-432024-66
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL--GP-GSFTGV-RV 76 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~--GP-GSFTGl-Ri 76 (206)
|.||+||--+..++||+-+...................+.++..|.+++++. +++.|+||. .. |+.+.. +.
T Consensus 3 MriLgiD~G~kriGvAisD~~~~~a~pl~~i~~~~~~~~~~~~~i~~ii~e~-----~i~~iViGlP~~~dg~~~~~~~~ 77 (150)
T 1vhx_A 3 LRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDY-----TIDKIVLGFPKNMNGTVGPRGEA 77 (150)
T ss_dssp EEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTS-----EEEEEEEECCCCBTTBCCHHHHH
T ss_pred CEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH-----CCCEEEEECCCCCCCCHHHHHHH
T ss_conf 6099995289979999956998833560113322345247999999999983-----99969985784668875488999
Q ss_pred HHHHHHHHHHHCCCCCCCC----CHHHH
Q ss_conf 8999999997326871103----83899
Q gi|254780429|r 77 SIAVARGISLVLKQPALGV----GNLEV 100 (206)
Q Consensus 77 gia~akgLa~~~~~pv~gv----ssle~ 100 (206)
...+++-|....++|+.=+ ||-++
T Consensus 78 v~~f~~~l~~~~~l~V~~~DEr~TS~~A 105 (150)
T 1vhx_A 78 SQTFAKVLETTYNVPVVLWDERLTTMAA 105 (150)
T ss_dssp HHHHHHHHHHHHCSCEEEECCSSCHHHH
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCHHHH
T ss_conf 9999996265889756886788659999
No 24
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=86.85 E-value=0.52 Score=25.42 Aligned_cols=101 Identities=13% Similarity=0.222 Sum_probs=74.1
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC---HHH
Q ss_conf 2788621680127899977981399999984226----899989999999997609998786654303785432---024
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR----GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF---TGV 74 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r----~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF---TGl 74 (206)
.+++||-..+.+.+++++-. ++++.+...+.+. .--+.+...|++++++++.+..++.+|.++. ||.+ +|+
T Consensus 86 ~~igv~i~~~~i~~~l~dl~-g~ii~~~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~i~gigia~-pG~vd~~~g~ 163 (406)
T 1z6r_A 86 HYLSLRISRGEIFLALRDLS-SKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITL-PGIIDTENGI 163 (406)
T ss_dssp EEEEEEEETTEEEEEEEETT-CCEEEEEEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEE-SSEEETTTTE
T ss_pred EEEEEEECCCEEEEEEECCC-CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC-CCCCCCCCCE
T ss_conf 89999988988999998699-988988998436798699999999999999996577535646998512-5787788888
Q ss_pred -------H--HHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf -------6--68999999997326871103838999987
Q gi|254780429|r 75 -------R--VSIAVARGISLVLKQPALGVGNLEVLARA 104 (206)
Q Consensus 75 -------R--igia~akgLa~~~~~pv~gvssle~la~~ 104 (206)
. -++...+-|...+++|++=.+...+.|..
T Consensus 164 v~~~~~~~~~~~~~l~~~l~~~~~~pv~v~ND~~a~a~a 202 (406)
T 1z6r_A 164 VHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMA 202 (406)
T ss_dssp EEECTTCTTCSSBCHHHHHHHHHSSCEEEEEHHHHHHHH
T ss_pred EECCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHH
T ss_conf 972788766468857999999878884445625689999
No 25
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4 c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=86.46 E-value=1.7 Score=22.14 Aligned_cols=66 Identities=11% Similarity=0.141 Sum_probs=48.3
Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECC----H---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHC-CCCC
Q ss_conf 78862168012789997798139999998422----6---------89998999999999760999878665430-3785
Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLG----R---------GHAEHLMPAIDYALKDSRLEVSQVDRVVT-ALGP 68 (206)
Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~----r---------~hs~~L~~~i~~lL~~~~~~~~~id~iav-~~GP 68 (206)
+|+||--|..+-++|++. +++++.......+ + .-=+.+...+.+++++++++..+|.+|++ +.|.
T Consensus 5 ~lgIDiGTss~Ka~l~d~-~g~~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~i~~~~~~~~~~~~~I~aI~is~~~~ 83 (510)
T 2p3r_A 5 IVALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRE 83 (510)
T ss_dssp EEEEEECSSEEEEEEECT-TCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECSS
T ss_pred EEEEEECCCCEEEEEECC-CCCEEEEEEECCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCC
T ss_conf 999982241422228829-9989999995377035899828989999999999999999997599965679999957877
Q ss_pred C
Q ss_conf 4
Q gi|254780429|r 69 G 69 (206)
Q Consensus 69 G 69 (206)
|
T Consensus 84 ~ 84 (510)
T 2p3r_A 84 T 84 (510)
T ss_dssp C
T ss_pred C
T ss_conf 7
No 26
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170}
Probab=86.45 E-value=1.3 Score=22.91 Aligned_cols=63 Identities=5% Similarity=-0.035 Sum_probs=43.9
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECC-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 278862168012789997798139999998422-------------6899989999999997609998786654303
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLG-------------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTA 65 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~-------------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~ 65 (206)
.||+||-.|..+-+++++. +++++.......+ ..--+.+...+.+++++++.+..+|.+|.++
T Consensus 8 yvlgIDiGTts~Ka~l~d~-~g~il~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~l~~~~~~~~~~i~aI~is 83 (508)
T 3ifr_A 8 QVIGLDIGTTSTIAILVRL-PDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGICVT 83 (508)
T ss_dssp EEEEEEECSSEEEEEEEET-TTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEC-CCCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 8999987223427789958-999999999856712599981899999999999999999999638886770399997
No 27
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A
Probab=84.88 E-value=0.58 Score=25.11 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-----HHHH--HHHHHCC
Q ss_conf 89998999999999760999878665430378543202466899999999732687110383-----8999--9875214
Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN-----LEVL--ARAHLDS 108 (206)
Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss-----le~l--a~~~~~~ 108 (206)
..++.+...+.++|+++|++++|||.+.++. +.+=.+.-++ .+..+++|.++|.+ ++++ |......
T Consensus 54 AE~~L~~eA~~~ALekAGl~~~dID~vi~Gd----ll~q~~~a~~---~a~~lgIP~~~V~~ACss~~~Al~~Aa~~I~s 126 (347)
T 3lma_A 54 AERKLMEDAVQSALSKQNLKKEDIDIFLAGD----LLNQNVTANY---VARHLKIPFLCLFGACSTSMESIAISSALIDG 126 (347)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCSEEEEEE----SSSSSTTHHH---HHHHHCCCEEEBCCSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHCCEEEEEE----CCCCHHHHHH---HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999999998198989998999841----5787279999---99974998885156555699999999999977
Q ss_pred CCCCEEEEE
Q ss_conf 678659998
Q gi|254780429|r 109 HVGRPIMVL 117 (206)
Q Consensus 109 ~~~~~i~~~ 117 (206)
...+.+++.
T Consensus 127 G~ad~vLa~ 135 (347)
T 3lma_A 127 GFAKRALAA 135 (347)
T ss_dssp TSCSEEEEE
T ss_pred CCCCEEEEE
T ss_conf 999999999
No 28
>3fk5_A 3-oxoacyl-synthase III; bacterial blight, XOO4209, FABH, xanthomonas oryzae PV. oryzae KACC10331, cytoplasm, multifunctional enzyme; 2.05A {Xanthomonas oryzae PV}
Probab=84.64 E-value=2 Score=21.58 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-----HHH--HHHHHHC
Q ss_conf 689998999999999760999878665430378543202466899999999732687110383-----899--9987521
Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN-----LEV--LARAHLD 107 (206)
Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss-----le~--la~~~~~ 107 (206)
..-++.-....+++|+++|++++|||.|.++.--+.+..=-.+.-++.-|....+++.+.++. +.+ +|.+...
T Consensus 59 e~~~dmA~~Aa~~aL~~ag~~~~dId~lI~~s~t~~~~~P~~a~~v~~~LGl~~~~~~~dv~~~C~g~~~aL~~A~~~l~ 138 (338)
T 3fk5_A 59 VQASDAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLE 138 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGEEEEEECCSSCSCSSSCHHHHHHHHHTCCTTCEEEECCCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998498989999999982148975874999999981899866898613015799999999998875
Q ss_pred CCCCCEEEEE
Q ss_conf 4678659998
Q gi|254780429|r 108 SHVGRPIMVL 117 (206)
Q Consensus 108 ~~~~~~i~~~ 117 (206)
......++++
T Consensus 139 ~g~~~~~Lvv 148 (338)
T 3fk5_A 139 RGEIDYALVV 148 (338)
T ss_dssp TTSCSEEEEE
T ss_pred CCCCCEEEEE
T ss_conf 2996369996
No 29
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A
Probab=84.54 E-value=0.47 Score=25.71 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHH
Q ss_conf 999899999999976099987866543037854320246689999999973268711038-----3899998
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG-----NLEVLAR 103 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs-----sle~la~ 103 (206)
-.+.....++++|+++|++++|||.++++.......|-.++=-++.......++|.+.|+ .++++..
T Consensus 30 ~~eLa~~a~~~al~dagl~~~dID~v~~G~v~~~~~~~~~ar~~al~~g~~~~ip~~tv~~aC~Sg~~Ai~~ 101 (397)
T 1wl4_A 30 VQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCL 101 (397)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTSCEEEECCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 999999999999987196989919999993176565644999999976999864423340134267789999
No 30
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=83.82 E-value=1 Score=23.59 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=46.2
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECC---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 278862168012789997798139999998422---6899989999999997609998786654303
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLG---RGHAEHLMPAIDYALKDSRLEVSQVDRVVTA 65 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~---r~hs~~L~~~i~~lL~~~~~~~~~id~iav~ 65 (206)
++++||-.|..+-++|++.+.++++.......+ ....+.+...+.+++++. .+..+|++|.++
T Consensus 6 lv~GiD~GTss~Ka~l~d~~~g~i~~~~~~~~p~~~eqd~~~~~~~~~~~~~~~-~~~~~I~aIgit 71 (515)
T 3i8b_A 6 LVAGVDTSTQSCKVRVTDAETGELVRFGQAKHPNGTSVDPSYWWSAFQEAAEQA-GGLDDVSALAVG 71 (515)
T ss_dssp EEEEEEECSSEEEEEEEETTTCCEEEEEEEECCSSSEECTHHHHHHHHHHHHHT-TCSTTEEEEEEE
T ss_pred EEEEEEECHHCEEEEEEECCCCEEEEEEECCCCCCEEECHHHHHHHHHHHHHHC-CCHHCCEEEEEE
T ss_conf 899998600021637898999979999962498988899999999999999962-773134699998
No 31
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=83.81 E-value=2 Score=21.59 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=55.1
Q ss_pred CC-EEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---------HHHHHHHHHHHHHHHHHC-CCHHHHHHHHCCC-C-
Q ss_conf 92-788621680127899977981399999984226---------899989999999997609-9987866543037-8-
Q gi|254780429|r 1 MI-VLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---------GHAEHLMPAIDYALKDSR-LEVSQVDRVVTAL-G- 67 (206)
Q Consensus 1 M~-iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---------~hs~~L~~~i~~lL~~~~-~~~~~id~iav~~-G- 67 (206)
|+ +|+||-.|...-++|++. +++++++...+.+. ...+.+...+.+++++.. -...+|.+|.++- |
T Consensus 3 mkYvlgIDiGTts~Ka~l~d~-~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~i~aIgis~~~~ 81 (504)
T 3ll3_A 3 LKYIIGMDVGTTATKGVLYDI-NGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKIDGKIAAISWSSQMH 81 (504)
T ss_dssp CEEEEEEEECSSEEEEEEEET-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCSSEEEEEEEEECSS
T ss_pred CCEEEEEECCCCCEEEEEECC-CCCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 778999975344427669918-9989999998478406999962479999999999999999963788705999907873
Q ss_pred -------------CC-CCHHHHHH--------HHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf -------------54-32024668--------999999997326871103838999
Q gi|254780429|r 68 -------------PG-SFTGVRVS--------IAVARGISLVLKQPALGVGNLEVL 101 (206)
Q Consensus 68 -------------PG-SFTGlRig--------ia~akgLa~~~~~pv~gvssle~l 101 (206)
|. .+.--|-. ....+-+....+.|..+..++--+
T Consensus 82 ~~v~~d~~g~pl~~~i~w~D~R~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl 137 (504)
T 3ll3_A 82 SLIGLGSDDELLTNSITWADNCAKSIVQDAKNRGFAQQIYRKTGMPMHPMAPIYKL 137 (504)
T ss_dssp CBEEECTTSCBSSCEECTTCCTTHHHHHHHHHHTHHHHHHHHHCCCSCTTSHHHHH
T ss_pred CEEEECCCCCEEECCEECCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHH
T ss_conf 18999999978443376666056779999985374021234208977755514556
No 32
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A
Probab=83.03 E-value=0.58 Score=25.11 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 9998999999999760999878665430378-543202466899999999732687110383
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALG-PGSFTGVRVSIAVARGISLVLKQPALGVGN 97 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~G-PGSFTGlRigia~akgLa~~~~~pv~gvss 97 (206)
..+.....++++|+++|+++++||.+.++.- ++...+-.++--++....+...+|.+.|+.
T Consensus 55 ~~dL~a~av~~al~~agi~~~~Id~vi~G~~~~~g~~~~n~ar~~al~aGLp~~vPa~tVe~ 116 (442)
T 2wu9_A 55 PDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNR 116 (442)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCCEEEECCSSBHHHHHHHHHHHHHHTTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECC
T ss_conf 99999999999999829698990989999604666566779999999769998876589815
No 33
>2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} SCOP: c.55.1.10 c.55.1.10
Probab=81.62 E-value=2.7 Score=20.81 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=65.9
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC---HHHHH-
Q ss_conf 92788621680127899977981399999984226899989999999997609998786654303785432---02466-
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF---TGVRV- 76 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF---TGlRi- 76 (206)
|.||+||-=...+.+++++. +++++.+...+.+. +-+.+...+++.+++. ++.+|.++. ||.. +|+-.
T Consensus 4 ~~~~~iDiGGT~ir~~l~d~-~g~ii~~~~~~t~~-~~~~~~~~i~~~~~~~-----~i~~Igia~-pG~vd~~~g~i~~ 75 (292)
T 2gup_A 4 MTIATIDIGGTGIKFASLTP-DGKILDKTSISTPE-NLEDLLAWLDQRLSEQ-----DYSGIAMSV-PGAVNQETGVIDG 75 (292)
T ss_dssp CCEEEEEEETTEEEEEEECT-TCCEEEEEEECCCS-SHHHHHHHHHHHHTTS-----CCSEEEEEE-SSEECTTTCBEES
T ss_pred CEEEEEEECCHHEEEEEECC-CCCEEEEEEEECCC-CHHHHHHHHHHHHHHC-----CCCEEEEEE-CCCCCCCCCCCCC
T ss_conf 88999997702469999918-99699999972876-5999999999986652-----786799960-6752156672024
Q ss_pred -------HHHHHHHHHHHCCCCCCCCCHHHHHHHHHH-C-CCCCCEEEEEECCCCC
Q ss_conf -------899999999732687110383899998752-1-4678659998508714
Q gi|254780429|r 77 -------SIAVARGISLVLKQPALGVGNLEVLARAHL-D-SHVGRPIMVLVSLFHQ 123 (206)
Q Consensus 77 -------gia~akgLa~~~~~pv~gvssle~la~~~~-~-~~~~~~i~~~idArr~ 123 (206)
..-..+-+...+++|++=.+-..+.|..-. . ...+.-+.+.+...-+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~pv~~~ND~~a~a~aE~~~~~~~~~~~~v~ig~GiG 131 (292)
T 2gup_A 76 FSAVPYIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIG 131 (292)
T ss_dssp CCSSGGGSSSBHHHHTGGGCCCEEEEEHHHHHHHHHHHHCTTCSSEEEEEESSSEE
T ss_pred CCCCCCCCCCCHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 33333335732689998619949982167899899876266534214788626544
No 34
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=81.42 E-value=2.2 Score=21.30 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=70.5
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC---HHH
Q ss_conf 2788621680127899977981399999984226----899989999999997609998786654303785432---024
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR----GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF---TGV 74 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r----~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF---TGl 74 (206)
.+++||-....+.+++++-. ++++.+...+... .--+.+...|++++++++.+..++.+|.++. ||.+ +|+
T Consensus 109 ~~iGIdig~~~i~~~l~dl~-G~il~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~gIgi~~-pG~vd~~~g~ 186 (429)
T 1z05_A 109 QFLSMRLGRGYLTIALHELG-GEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITL-PGLVNSEQGI 186 (429)
T ss_dssp EEEEEEEETTEEEEEEEETT-SCEEEEEEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEE-SSEEETTTTE
T ss_pred EEEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-CCCCCCCCCE
T ss_conf 99999989998999998499-878999983488788789999999999999997576614657999962-7861688874
Q ss_pred H--------HHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 6--------689999999973268711038389999
Q gi|254780429|r 75 R--------VSIAVARGISLVLKQPALGVGNLEVLA 102 (206)
Q Consensus 75 R--------igia~akgLa~~~~~pv~gvssle~la 102 (206)
- -++...+-|...+++|++=.+--.+.|
T Consensus 187 ~~~~~~~~~~~~~l~~~l~~~~~~pV~v~NDa~a~a 222 (429)
T 1z05_A 187 VLQMPHYNVKNLALGPEIYKATGLPVFVANDTRAWA 222 (429)
T ss_dssp EEECSSSBCSSBCHHHHHHHHHCSCEEEEEHHHHHH
T ss_pred EECCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 624898885898458999999799889944645214
No 35
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Probab=81.23 E-value=0.69 Score=24.62 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHCCCCC---------CCCCHHHHHHHH
Q ss_conf 8999899999999976099987866543037-85432024668999999997326871---------103838999987
Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSFTGVRVSIAVARGISLVLKQPA---------LGVGNLEVLARA 104 (206)
Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSFTGlRigia~akgLa~~~~~pv---------~gvssle~la~~ 104 (206)
...+.....++++|+++|++++|||.+.++. .|+...+-.++--. +...++|. ..-|.+.++...
T Consensus 25 ~~~eLa~~A~~~al~dagl~~~dID~v~~G~~~~~~~~~~~~ar~~----al~~Glp~~~pa~~V~~aCaSG~~Ai~~A 99 (401)
T 1ulq_A 25 RPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMA----LLLAGFPVEVAGCTVNRLCGSGLEAVAQA 99 (401)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSSTTTTTHHHHH----HHHTTCCTTCEEEEEECGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHCEEEEEECCCCCCCCCHHHHHH----HHHCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 9999999999999998195979949899994766554401499999----99769898765589835244699999999
No 36
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, cytoplasm, thiolase fold; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ...
Probab=80.62 E-value=0.61 Score=24.99 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHH
Q ss_conf 999899999999976099987866543037854320246689999999973268711038-----3899998
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG-----NLEVLAR 103 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs-----sle~la~ 103 (206)
..+.....+.++|+++|+++++||.+.++.--..-.|-.++--++....+...+|.+.|+ .++++..
T Consensus 27 ~~eL~a~a~~~al~~agi~~~~Id~v~~G~~~~~~~g~~~ar~~al~aGlp~~vp~~~v~~~CaSg~~Ai~~ 98 (392)
T 2vu1_A 27 AHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVAL 98 (392)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTSEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 999999999999987096989979999994476566656999999977999877618984542177899999
No 37
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta- alpha-beta-alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Probab=79.78 E-value=0.76 Score=24.37 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 99989999999997609998786654303785432024668999999997326871103838
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNL 98 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvssl 98 (206)
..+.....++++|+++|+++++||.+.++.-.....|-.++-.++-...+..++|...|...
T Consensus 32 ~~eL~~~a~~~Al~dagi~~~dId~v~~G~~~~~~~~~~~ar~~~l~~glp~~~p~~~ve~a 93 (395)
T 2ib8_A 32 ATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKV 93 (395)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTCCEEEEECG
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 99999999999998719498993999997078545344799999997799978871688450
No 38
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium}
Probab=79.41 E-value=0.88 Score=23.96 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 9989999999997-6099987866543037-8543202466899999999732687110383
Q gi|254780429|r 38 AEHLMPAIDYALK-DSRLEVSQVDRVVTAL-GPGSFTGVRVSIAVARGISLVLKQPALGVGN 97 (206)
Q Consensus 38 s~~L~~~i~~lL~-~~~~~~~~id~iav~~-GPGSFTGlRigia~akgLa~~~~~pv~gvss 97 (206)
.+.....++++|. .+|+++++||.++++. .|+.+.|-.++--++.......++|.+.|+.
T Consensus 28 ~eL~~~a~~~al~rdagi~~~dID~v~~G~~~~~~~~g~~~ar~~al~~~~~~~~p~~~V~~ 89 (387)
T 3goa_A 28 EDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNR 89 (387)
T ss_dssp HHHHHHHHHHHHHHCTTSCGGGCCEEEEECSCCSBTTTTTHHHHHHHHTTCCTTSCCEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 99999999999962799598999989999587645442419999999779998724689954
No 39
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Probab=79.13 E-value=0.4 Score=26.14 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 9989999999997-6099987866543037-8543202466899999999732687110383
Q gi|254780429|r 38 AEHLMPAIDYALK-DSRLEVSQVDRVVTAL-GPGSFTGVRVSIAVARGISLVLKQPALGVGN 97 (206)
Q Consensus 38 s~~L~~~i~~lL~-~~~~~~~~id~iav~~-GPGSFTGlRigia~akgLa~~~~~pv~gvss 97 (206)
.+.....++++|+ .+|++++|||.+.++. .|+.++|-.++--++.......++|.+-|..
T Consensus 31 ~eL~~~a~~~al~rdagl~~~dId~v~~G~~~~~~~~g~~~ar~~al~~g~~~~~p~~~v~~ 92 (390)
T 1wdk_C 31 EDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSR 92 (390)
T ss_dssp HHHHHHHHHHHHHHCTTSCGGGEEEEEEECSSBSBTTTTTHHHHHHTTSSSCTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 99999999999986589598998989999646522232309999999559988866689724
No 40
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genomics consortium, SGC, transferase; 2.55A {Homo sapiens}
Probab=78.94 E-value=1.3 Score=22.79 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHC----CCCCCCCC
Q ss_conf 9998999999999760999878665430378-543202466899999999732----68711038
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALG-PGSFTGVRVSIAVARGISLVL----KQPALGVG 96 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~G-PGSFTGlRigia~akgLa~~~----~~pv~gvs 96 (206)
-.+.....++++|+++++++++||.+.++.- |.+ .| -..++-.++.. .+|.+-|+
T Consensus 55 ~~dL~~~a~~~al~~agi~~~~ID~vi~G~v~~~g-~g----~~~ar~aal~aGlp~~vPa~tVe 114 (418)
T 2iik_A 55 PDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPG-AG----AIMARIAQFLSDIPETVPLSTVN 114 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCCEEEECSSSBG-GG----HHHHHHHHHHTTCCTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCC-CC----CHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 99999999999999749898994999999078766-66----65999999977999888638973
No 41
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=78.31 E-value=3.4 Score=20.13 Aligned_cols=69 Identities=9% Similarity=0.212 Sum_probs=47.8
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEE-CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCCCCH
Q ss_conf 2788621680127899977981399999984-226899989999999997609998786654303-7854320
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKN-LGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTA-LGPGSFT 72 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~-~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~-~GPGSFT 72 (206)
|+|+||--+..+-.|+++++ ++....... ....-...+...++++++..++...+++.+.++ +.|--..
T Consensus 1 M~L~IDiGNT~iK~~l~~~~--~~~~~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~i~ssv~~~~~~ 71 (268)
T 2h3g_X 1 MIFVLDVGNTNAVLGVFEEG--ELRQHWRMETDRHKTEDEYGMLVKQLLEHEGLSFEDVKGIIVSSVVPPIMF 71 (268)
T ss_dssp CEEEEEECSSEEEEEEEETT--EEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCHHHHH
T ss_pred CEEEEEECCCCCEEEEEECC--EEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH
T ss_conf 98999988771089999899--999999984587667789999999998765997343213798246876899
No 42
>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=78.15 E-value=2.1 Score=21.48 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=42.8
Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---------HHHHHHHHHHHHHHH---HHCCCHHHHHHHHCCC
Q ss_conf 788621680127899977981399999984226---------899989999999997---6099987866543037
Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---------GHAEHLMPAIDYALK---DSRLEVSQVDRVVTAL 66 (206)
Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---------~hs~~L~~~i~~lL~---~~~~~~~~id~iav~~ 66 (206)
||+||--|..+-++|++.+ ++++++....... ...+.+...+.++++ +++.+..+|.+|.++-
T Consensus 7 ilgID~GTts~Ka~l~d~~-g~~v~~~~~~~~~~~~~~g~~Eqd~~~~~~a~~~~~~~l~~~~~~~~~I~aIgis~ 81 (511)
T 3hz6_A 7 IATFDIGTTEVKAALADRD-GGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWWQSGVDARRVSAIVLSG 81 (511)
T ss_dssp EEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEE
T ss_pred EEEEEECCCCEEEEEEECC-CCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEC
T ss_conf 9999851202130378188-99999999834734689997568999999999999999997399964346999956
No 43
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, alpha-beta-alpha-beta-alpha fold; HET: 15P; 2.22A {Streptomyces coelicolor A3} SCOP: c.95.1.2 c.95.1.2
Probab=77.74 E-value=2 Score=21.60 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 989999999997609998786654303785432024668999999997
Q gi|254780429|r 39 EHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISL 86 (206)
Q Consensus 39 ~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~ 86 (206)
+.-..+.+++|+++|++++|||.|+++..+|.++. -.+.-+.+-|..
T Consensus 86 ~la~~Aa~~aL~~ag~~~~dIdllI~~s~t~~~~P-~~a~~v~~~LGl 132 (382)
T 1u0m_A 86 SRVPAVIQRALDDAELLATDIDVIIYVSCTGFMMP-SLTAWLINEMGF 132 (382)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEEECSSSCCSS-CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCC-CHHHHHHHHHCC
T ss_conf 99999999999983989899989999867999888-889999998578
No 44
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, ribonuclease H fold, sugar kinase/HSP70/actin superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=77.63 E-value=3.6 Score=20.01 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=57.2
Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECCH-------HHHHHHHHHHHHHHHHHCCCHH-HHHHHHCCCCCC--CCH
Q ss_conf 788621680127899977981399999984226-------8999899999999976099987-866543037854--320
Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLGR-------GHAEHLMPAIDYALKDSRLEVS-QVDRVVTALGPG--SFT 72 (206)
Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r-------~hs~~L~~~i~~lL~~~~~~~~-~id~iav~~GPG--SFT 72 (206)
.++||-=...+.++|++.+ ++++.+....... .-.+.|..++++++++++++.. ++..+.++ +|| +-.
T Consensus 8 ~iGIDiGGTk~~~~l~d~~-G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g~~~~~~i~~ig~~-~~g~~~~~ 85 (347)
T 2ch5_A 8 YGGVEGGGTRSEVLLVSED-GKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLS-LSGGDQED 85 (347)
T ss_dssp EEEEEECTTCEEEEEEETT-SCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEE-ETTTTCHH
T ss_pred EEEEECCCHHEEEEEECCC-CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE-CCCCCCCC
T ss_conf 9999906121288899499-999999994689966589999999999999999997499977644443342-36655753
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 2466899999999732687110383899
Q gi|254780429|r 73 GVRVSIAVARGISLVLKQPALGVGNLEV 100 (206)
Q Consensus 73 GlRigia~akgLa~~~~~pv~gvssle~ 100 (206)
+-+.-.......-...+.|++--+-..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~i~nDa~a 113 (347)
T 2ch5_A 86 AGRILIEELRDRFPYLSESYLITTDAAG 113 (347)
T ss_dssp HHHHHHHHHHHHCTTSBSCEEEEEHHHH
T ss_pred CCEECCCHHHHHCCCCCCEEEEECHHHH
T ss_conf 1211141233432577871999566999
No 45
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinase-HSP70- actin superfamily, L-rhamnulose kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=75.59 E-value=0.47 Score=25.74 Aligned_cols=62 Identities=16% Similarity=0.073 Sum_probs=42.0
Q ss_pred EEEEECCCHHHEEEEEECCCCEEEE--EEEE----E-----CCHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 7886216801278999779813999--9998----4-----2268--99989999999997609998786654303
Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILG--SYFK----N-----LGRG--HAEHLMPAIDYALKDSRLEVSQVDRVVTA 65 (206)
Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~--~~~~----~-----~~r~--hs~~L~~~i~~lL~~~~~~~~~id~iav~ 65 (206)
+|+||.-|...-++|++.+. +++. .... + .++. -.+.+...+.+++++++.+.++|.+|+++
T Consensus 6 ~lgiDiGTtsvKa~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~~~l~~~~~~~~~I~aI~is 80 (489)
T 2uyt_A 6 CVAVDLGASSGRVMLARYER-ECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAAGIAIDSIGID 80 (489)
T ss_dssp EEEEEECSSEEEEEEEEEEG-GGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEECCCCCEEEEEEECCC-CEEEEEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99997764352658996799-8899999986516998734899648989999999999999984488981599993
No 46
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=74.92 E-value=1.8 Score=22.00 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=54.4
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC---CCCCHH-HHHH
Q ss_conf 278862168012789997798139999998422689998999999999760999878665430378---543202-4668
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG---PGSFTG-VRVS 77 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G---PGSFTG-lRig 77 (206)
.||+||--+..+++|+-+.... ++.-.....+.....+...+++++++.+ ++.|+++.= =|+.+. .+..
T Consensus 4 riLgiD~G~kriGlAisd~~~~--~a~pl~~i~~~~~~~~~~~l~~~i~e~~-----~~~iVvG~P~~~~g~~~~~~~~v 76 (138)
T 1nu0_A 4 TLMAFDFGTKSIGVAVGQRITG--TARPLPAIKAQDGTPDWNIIERLLKEWQ-----PDEIIVGLPLNMDGTEQPLTARA 76 (138)
T ss_dssp EEEEEECCSSEEEEEEEETTTT--EEEEEEEEEEETTEECHHHHHHHHHHHC-----CSEEEEEEEECTTSCBCHHHHHH
T ss_pred CEEEEEECCCEEEEEEECCCCC--CEECCEEEECCCCHHHHHHHHHHHHHCC-----CCEEEECCCCCCCCCCCHHHHHH
T ss_conf 6899993788799999479988--4304188982774689999999863048-----72999555457789848899999
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999999973268711
Q gi|254780429|r 78 IAVARGISLVLKQPAL 93 (206)
Q Consensus 78 ia~akgLa~~~~~pv~ 93 (206)
-.+++-|....++|++
T Consensus 77 ~~F~~~L~~~~~i~v~ 92 (138)
T 1nu0_A 77 RKFANRIHGRFGVEVK 92 (138)
T ss_dssp HHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHCCCEE
T ss_conf 9999999985099879
No 47
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa}
Probab=72.54 E-value=3 Score=20.45 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-----CCHH-HH--HHHHHHCC
Q ss_conf 9998999999999760999878665430378543202466899999999732687110-----3838-99--99875214
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALG-----VGNL-EV--LARAHLDS 108 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~g-----vssl-e~--la~~~~~~ 108 (206)
-++.-..+.+++|+++|++++|||.|+++.-.|.++. =.+..+++.|....++..+- .+.+ .+ +|.+....
T Consensus 96 ~~~la~~Aa~~aL~~ag~~~~dIdllI~~t~t~~~~P-~~a~~i~~~Lgl~~~~~~~~~~~~~C~g~~~aL~~A~~~i~~ 174 (387)
T 3oit_A 96 VPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHVP-GVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAEN 174 (387)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSCCEES-CHHHHHHHHHTCCTTCEEEEEECCGGGHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCC-CHHHHHHHHHCCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999999999999984999889757999777899898-699999998477787167652117208999999999999972
Q ss_pred CCCCEEEEE
Q ss_conf 678659998
Q gi|254780429|r 109 HVGRPIMVL 117 (206)
Q Consensus 109 ~~~~~i~~~ 117 (206)
...+.++++
T Consensus 175 g~~~~vLvV 183 (387)
T 3oit_A 175 SRGARVLVV 183 (387)
T ss_dssp STTCEEEEE
T ss_pred CCCCCEEEE
T ss_conf 998732688
No 48
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=72.27 E-value=1.7 Score=22.02 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=62.1
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC-CCCC-HHH-----
Q ss_conf 278862168012789997798139999998422689998999999999760999878665430378-5432-024-----
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG-PGSF-TGV----- 74 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G-PGSF-TGl----- 74 (206)
+.|+||-=...+.+++++.+ ++++.+...+.+..-.+.++..|.+++++...+...+..+.++.+ |... +|+
T Consensus 25 ~ylGiDiGGT~i~~al~d~~-G~il~~~~~~t~~~~~~~~l~~i~~~i~~~~~~~~~~~~igi~~~G~vd~~~g~i~~~~ 103 (327)
T 2ap1_A 25 MYYGFDIGGTKIALGVFDST-RRLQWEKRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGTLYAAN 103 (327)
T ss_dssp EEEEEEECSSEEEEEEEETT-CCEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESSBSCCTTSCCBCTT
T ss_pred EEEEEEECCCEEEEEEECCC-CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECCC
T ss_conf 79999967224999999199-98999999869999999999999999999988638872899997886546786483466
Q ss_pred ---HHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf ---66899999999732687110383899998
Q gi|254780429|r 75 ---RVSIAVARGISLVLKQPALGVGNLEVLAR 103 (206)
Q Consensus 75 ---Rigia~akgLa~~~~~pv~gvssle~la~ 103 (206)
.-......-|...+++|++-.+.-.+.|.
T Consensus 104 ~~~~~~~~l~~~L~~~~~~~v~~~nD~~~~Al 135 (327)
T 2ap1_A 104 VPAASGKPLRADLSARLDRDVRLDNDANCFAL 135 (327)
T ss_dssp CTTTTTSCHHHHHHHHHTSCEEEEEHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEECCCHHHHH
T ss_conf 73324660999999987998798247518788
No 49
>3eo3_A Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens}
Probab=70.80 E-value=5.2 Score=18.92 Aligned_cols=102 Identities=20% Similarity=0.185 Sum_probs=68.8
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC---HHH
Q ss_conf 92788621680127899977981399999984226---899989999999997609998786654303785432---024
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF---TGV 74 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF---TGl 74 (206)
|..|+||--...+.+++++.+ ++++.+.....+. .-.+.+...+.+.+.++.....++.+|.++. ||.+ +|+
T Consensus 20 ~~~lGIDiGGT~~~~al~d~~-G~vl~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~igia~-pG~vd~~~g~ 97 (333)
T 3eo3_A 20 LSALAVDLGGTNLRVAIVSMK-GEIVKKYTQFNPKTYEERINLILQMCVEAAAEAVKLNCRILGVGIST-GGRVNPREGI 97 (333)
T ss_dssp CEEEEEEECSSEEEEEEEETT-SCEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEC-----------
T ss_pred CEEEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC-CCCCCCCCCC
T ss_conf 549999977113999999599-97999999689999789999999999999998612478667999942-8746566582
Q ss_pred HH----------HHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 66----------8999999997326871103838999987
Q gi|254780429|r 75 RV----------SIAVARGISLVLKQPALGVGNLEVLARA 104 (206)
Q Consensus 75 Ri----------gia~akgLa~~~~~pv~gvssle~la~~ 104 (206)
.+ .+.+.+.|...+++|+.=.+-..+.+..
T Consensus 98 v~~s~~~~~~~~~~~l~~~l~~~~~~pv~v~ND~~a~a~a 137 (333)
T 3eo3_A 98 VLHSTKLIQEWNSVDLRTPLSDTLHLPVWVDNDGNCAALA 137 (333)
T ss_dssp --------------CCHHHHHHHHCSCEEEECHHHHHHHH
T ss_pred EECCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCHHH
T ss_conf 4303555420137755566653239837664653200168
No 50
>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=70.66 E-value=4.8 Score=19.17 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=30.8
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHH
Q ss_conf 878665430378543202466899999999732687110383-8999987
Q gi|254780429|r 56 VSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN-LEVLARA 104 (206)
Q Consensus 56 ~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss-le~la~~ 104 (206)
++++|+|+++=||+++.--.--+.-..-+....++|++|++- +++|+..
T Consensus 52 l~~~dgiIl~GG~~~~~~~~~~~~~l~~~~~~~~~PiLGIClG~QlL~~~ 101 (212)
T 2a9v_A 52 LDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALH 101 (212)
T ss_dssp GTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHH
T ss_pred HHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHH
T ss_conf 83699199979998434343789999999985799899875988999987
No 51
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=70.54 E-value=5.3 Score=18.88 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=54.8
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEE-------------------CCHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 92788621680127899977981399999984-------------------22689998999999999760999878665
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKN-------------------LGRGHAEHLMPAIDYALKDSRLEVSQVDR 61 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~-------------------~~r~hs~~L~~~i~~lL~~~~~~~~~id~ 61 (206)
|.||.|+.-+..+-++|++.+..+.+.+-... ....|...+-.. .+.|++.+. ..++++
T Consensus 18 ~lILVIN~GSSS~K~alf~~~~~~~l~~g~ve~i~~~~~~~~~~~~~~~~~~~~~~~~al~~i-l~~L~~~~~-~~~i~a 95 (415)
T 2e1z_A 18 PVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALKAI-AFELEKRDL-TDSVAL 95 (415)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCCEEEEEEEESTTSSSCEEEETTSCCEECCSCCHHHHHHHH-HHHHHTTTC-GGGEEE
T ss_pred CEEEEECCCHHHHEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCEEEECCCCCHHHHHHHH-HHHHHHCCC-CCCCEE
T ss_conf 169998277061651789789988677602122589885699717803650302899999999-999984698-535218
Q ss_pred HHCCCCCC--CCHH-HHHHHHHHHHHHHH-CCCCCCCCCHHHHH
Q ss_conf 43037854--3202-46689999999973-26871103838999
Q gi|254780429|r 62 VVTALGPG--SFTG-VRVSIAVARGISLV-LKQPALGVGNLEVL 101 (206)
Q Consensus 62 iav~~GPG--SFTG-lRigia~akgLa~~-~~~pv~gvssle~l 101 (206)
|..=++-| -|++ .||.-.+.+.|-.. .-.|+.--++|..+
T Consensus 96 VghRvVhGG~~f~~~~~Vd~~vl~~L~~l~~lAPlHnp~~L~~i 139 (415)
T 2e1z_A 96 IGHRIAHGGELFTQSVIITDEIIDNIRRVSPLAPLHNYANLSGI 139 (415)
T ss_dssp EEEEESCCTTTCSSCEECCHHHHHHHHHHGGGSHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 96678678866778665679999999963578766785789999
No 52
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A {Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A 1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A* 1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A* 1z1e_A* 1z1f_A*
Probab=69.76 E-value=5.5 Score=18.78 Aligned_cols=79 Identities=14% Similarity=0.062 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-----CCHH-HH--HHHHHHCCC
Q ss_conf 998999999999760999878665430378543202466899999999732687110-----3838-99--998752146
Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALG-----VGNL-EV--LARAHLDSH 109 (206)
Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~g-----vssl-e~--la~~~~~~~ 109 (206)
++.-..+.+++|+++|++++|||.|+++.-.|..+ -=.+..+++.|....++..+. -+.+ .+ +|.+.....
T Consensus 103 ~dla~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~-P~~a~~v~~~Lgl~~~~~~~~~~~~gC~g~~~aL~~A~~~i~sg 181 (389)
T 1i88_A 103 PRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDM-PGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAENN 181 (389)
T ss_dssp HHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCCS-SCHHHHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCC-CCHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998499988986999946589988-88999999996788666420002698859999999999999719
Q ss_pred CCCEEEEE
Q ss_conf 78659998
Q gi|254780429|r 110 VGRPIMVL 117 (206)
Q Consensus 110 ~~~~i~~~ 117 (206)
..+.++++
T Consensus 182 ~~~~vLvV 189 (389)
T 1i88_A 182 KGARVLVV 189 (389)
T ss_dssp TTCEEEEE
T ss_pred CCCCEEEE
T ss_conf 98734898
No 53
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=66.82 E-value=6.3 Score=18.39 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=45.1
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEE-----------------------ECCHHHHHHHHHHHHHHHHHH-CC--
Q ss_conf 9278862168012789997798139999998-----------------------422689998999999999760-99--
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFK-----------------------NLGRGHAEHLMPAIDYALKDS-RL-- 54 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~-----------------------~~~r~hs~~L~~~i~~lL~~~-~~-- 54 (206)
|+||.|+.-+..+-++|++....+.+..-.. ..-..|.+.+-..++.+.++. ++
T Consensus 1 MkILvIN~GSSS~K~alf~~~~~~~l~~g~ve~ig~~~s~i~~~~~~~~~~~~~~~~~~~~~a~~~il~~L~~~~~~~~~ 80 (408)
T 1g99_A 1 MKVLVINAGSSSLKYQLIDMTNESALAVGLCERIGIDNSIITQKKFDGKKLEKLTDLPTHKDALEEVVKALTDDEFGVIK 80 (408)
T ss_dssp CEEEEEEECSSCEEEEEEETTTTEEEEEEEEESTTSSSCEEEEEETTSCEEEEECCCCSHHHHHHHHHHHHTCTTTCSCS
T ss_pred CEEEEECCCHHHHEEEEEECCCCCEEEEEEEEECCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 90999847757264178978998678888888616898706898589717776158779999999999998723556437
Q ss_pred CHHHHHHHHCC--CCCCCCHH-HHHHHHHHHHH
Q ss_conf 98786654303--78543202-46689999999
Q gi|254780429|r 55 EVSQVDRVVTA--LGPGSFTG-VRVSIAVARGI 84 (206)
Q Consensus 55 ~~~~id~iav~--~GPGSFTG-lRigia~akgL 84 (206)
++++|++++-= -|-.-|++ .+|.-.+-+.|
T Consensus 81 ~~~~I~avGhRvVHGG~~~~~~~~i~~~v~~~l 113 (408)
T 1g99_A 81 DMGEINAVGHRVVHGGEKFTTSALYDEGVEKAI 113 (408)
T ss_dssp SGGGCCEEEEEESCCTTTCCSCEECCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCEEEHHHHHHHH
T ss_conf 710056898556667876777688119999999
No 54
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=66.72 E-value=2.9 Score=20.54 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=48.2
Q ss_pred CCCHHHH-----HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHCCCCC------CEEEEEECC
Q ss_conf 9998786-----65430378543202466899999999732687110383-89999875214678------659998508
Q gi|254780429|r 53 RLEVSQV-----DRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN-LEVLARAHLDSHVG------RPIMVLVSL 120 (206)
Q Consensus 53 ~~~~~~i-----d~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss-le~la~~~~~~~~~------~~i~~~idA 120 (206)
+.++++| |+|.++.|||.=.-....+.+++-+- ..++|++||+- .++|+.++-..... +.--.+.+.
T Consensus 221 ~~~~~eI~~~~pDgi~lS~GPG~P~~~~~~i~~i~~~~-~~~~PilGICLGhQll~~a~G~~~~k~~~gh~G~n~pv~~~ 299 (379)
T 1a9x_B 221 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFL-ETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV 299 (379)
T ss_dssp TCCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHT-TSCCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEET
T ss_pred CCCHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH-HCCCCEEEEEHHHHHHHHHHCCEEEECCCCCCCCCCCHHCC
T ss_conf 99999998419998996699999515568999999998-16998899747789999983973997898888970740026
Q ss_pred CCCEEEE
Q ss_conf 7141799
Q gi|254780429|r 121 FHQKVCC 127 (206)
Q Consensus 121 rr~~~y~ 127 (206)
..+.+|.
T Consensus 300 ~~~~~~~ 306 (379)
T 1a9x_B 300 EKNVVMI 306 (379)
T ss_dssp TTTEEEE
T ss_pred CCCCEEE
T ss_conf 7882799
No 55
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis H37RV} SCOP: c.95.1.2 PDB: 1tee_A
Probab=64.17 E-value=5 Score=19.03 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-----CH-HHH--HHHHHHCCCC
Q ss_conf 989999999997609998786654303785432024668999999997326871103-----83-899--9987521467
Q gi|254780429|r 39 EHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGV-----GN-LEV--LARAHLDSHV 110 (206)
Q Consensus 39 ~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gv-----ss-le~--la~~~~~~~~ 110 (206)
+.-..+.+++|+++|++++|||.|+++.-+|.++. -...-+++-|.....+..+.+ +. +.+ +|.+......
T Consensus 115 ~La~~Aa~~aL~~ag~~~~dId~vI~~t~t~~~~P-~~a~~v~~~LGl~~~~~~~~i~~~gC~g~~~aL~~A~~~l~sg~ 193 (393)
T 1ted_A 115 PLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAP-GVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHP 193 (393)
T ss_dssp HHHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSS-CHHHHHHHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCC-CHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999984999899989999887899898-69999999867998758987578834899999999999997599
Q ss_pred CCEEEEE
Q ss_conf 8659998
Q gi|254780429|r 111 GRPIMVL 117 (206)
Q Consensus 111 ~~~i~~~ 117 (206)
...++++
T Consensus 194 ~~~vLVV 200 (393)
T 1ted_A 194 AMKALVV 200 (393)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
T ss_conf 9727887
No 56
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=62.10 E-value=7.7 Score=17.83 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=39.0
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH---------HHHHH----HHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 2788621680127899977981399999984226---------89998----99999999976099987866543037
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR---------GHAEH----LMPAIDYALKDSRLEVSQVDRVVTAL 66 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r---------~hs~~----L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206)
|.|+||-.|..+-++|++. +++++++.....+. ...+. +...+++++++.+ .++|.+|+++.
T Consensus 1 ~ylgiDiGTtsiKa~l~d~-~g~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~l~~~~~--~~~I~aIgis~ 75 (484)
T 2itm_A 1 MYIGIDLGTSGVKVILLNE-QGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHS--LQDVKALGIAG 75 (484)
T ss_dssp CEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSC--CTTCCEEEEEE
T ss_pred CEEEEEECCCCEEEEEECC-CCCEEEEEEEECCEECCCCCEEEECHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEC
T ss_conf 9899983343424548819-898999999843515589983898999999999999999997679--66707999976
No 57
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone- stilbene synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum AX4}
Probab=60.17 E-value=8.2 Score=17.64 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-----CHH-H--HHHHHHHCCC
Q ss_conf 9989999999997609998786654303785432024668999999997326871103-----838-9--9998752146
Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGV-----GNL-E--VLARAHLDSH 109 (206)
Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gv-----ssl-e--~la~~~~~~~ 109 (206)
++.-..+.+++|+++|++++|||.|+++..-+-++ --.....++.+....++..+.+ +.+ . -+|.+.....
T Consensus 96 ~~ma~~Aa~~AL~~agi~~~dIdllI~~t~t~~~~-p~~~a~~~~~~~~~~~~~~~~~~~~~C~g~~~al~~A~~~l~sg 174 (374)
T 2h84_A 96 PDLAQQACLRALKDWGGDKGDITHIVSVTSTGIII-PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKAS 174 (374)
T ss_dssp HHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCCS-SCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCC-CCHHHHHHHHHCCCCCCEEEEHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998499989996999980079888-98799999984488886488613076899999999999998659
Q ss_pred CCCEEEEE
Q ss_conf 78659998
Q gi|254780429|r 110 VGRPIMVL 117 (206)
Q Consensus 110 ~~~~i~~~ 117 (206)
..+.++++
T Consensus 175 ~~~~vLvv 182 (374)
T 2h84_A 175 PRNRILVV 182 (374)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
T ss_conf 87605899
No 58
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase; HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2 c.95.1.2 PDB: 1qlv_A
Probab=60.04 E-value=8.3 Score=17.60 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9989999999997609998786654303785432024668999999997
Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISL 86 (206)
Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~ 86 (206)
.+.-..+.+++|+++|++++|||.|+++.-.|..+ ==+..-+++-|.+
T Consensus 108 ~~La~~Aa~~aL~~ag~~~~dId~lI~~T~t~~~~-P~~a~~l~~~LGl 155 (402)
T 1ee0_A 108 PMLGKEAAVKAIDEWGLPKSKITHLIFCTTAGVDM-PGADYQLVKLLGL 155 (402)
T ss_dssp HHHHHHHHHHHHHHHCSCGGGCCEEEEECSSCCEE-SCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCC-CCHHHHHHHHHCC
T ss_conf 99999999999998499989999999995799988-8679999998379
No 59
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Probab=59.66 E-value=7.1 Score=18.07 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 998999999999760999878665430378
Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALG 67 (206)
Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~G 67 (206)
.+.-..+.+++|+++|++++|||.|+++.-
T Consensus 126 ~~La~~Aa~~AL~~ag~~~~dId~lI~~T~ 155 (413)
T 1xes_A 126 PRLAKEAAEKAIQEWGQSKSGITHLIFCST 155 (413)
T ss_dssp HHHHHHHHHHHHHHHCSCGGGCCEEEEEES
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEEE
T ss_conf 999999999999981989889999999920
No 60
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa}
Probab=59.40 E-value=5.5 Score=18.79 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 899999999976099987866543037854320246689999999973268711
Q gi|254780429|r 40 HLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPAL 93 (206)
Q Consensus 40 ~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~ 93 (206)
.-..+.+++|+++|++++|||.|+++.-.|.++. -+..-+++.|.+..++.-+
T Consensus 113 La~~Aa~kAL~~Agi~p~dId~lI~~T~T~~~~P-~~a~~v~~~LGl~~~~~~~ 165 (465)
T 3e1h_A 113 LAVEASRKAMAEARLVPAQITHMVSTTCTDSANP-GYDHYVAKELGLSDRLEKV 165 (465)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCEEEEECSSCCCSS-CHHHHHHHHHTCCTTCEEE
T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCC-CHHHHHHHHHCCCCCCEEE
T ss_conf 9999999999975999889785799830899999-8899999984789980033
No 61
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Probab=59.26 E-value=8.6 Score=17.51 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999899999999976099987866543037854320246689999999973268711038
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG 96 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs 96 (206)
-++.-..+.+++|+++|++++|||.|+++.-=+.+..--.+.-+.+.|.. .+++.+.++
T Consensus 74 ~~~la~~Aa~~aL~~ag~~p~dIdlli~~t~t~~~~~p~~A~~v~~~lg~-~~~~~~di~ 132 (359)
T 3h78_A 74 VSALMVPAARQAIEAAGLLPEDIDLLLVNTLSPDHHDPSQACLIQPLLGL-RHIPVLDIR 132 (359)
T ss_dssp THHHHHHHHHHHHHHTTCCGGGCCEEEEECSSCSSSBSCHHHHHHHHHTC-CSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHHHHHHHHCCC-CCCEEEEEC
T ss_conf 99999999999999839897889399997558998997799999985589-996588501
No 62
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=58.21 E-value=9 Score=17.40 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=60.9
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHCCCCCCCC---------
Q ss_conf 27886216801278999779813999999842268999899999999976-09998786654303785432---------
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKD-SRLEVSQVDRVVTALGPGSF--------- 71 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~-~~~~~~~id~iav~~GPGSF--------- 71 (206)
.+|+||--...+.+++++.+ ++++.....+......+..+..+.+.+++ ......++.+|.++. ||..
T Consensus 10 ~vlgiDIGGT~i~~al~d~~-g~i~~~~~~pt~~~~~~~~l~~i~~~i~~~~~~~~~~i~gIGia~-pG~vd~~~G~v~~ 87 (366)
T 3mcp_A 10 IVMTLDAGGTNFVFSAIQGG-KEIADPVVLPACADCLDKCLGNLVEGFKAIQAGLPEAPVAISFAF-PGPADYQAGIIGD 87 (366)
T ss_dssp EEEEEECSSSEEEEEEEETT-EECSCCEEEECCTTCHHHHHHHHHHHHHHHHTTCSSCCCEEEEEC-CSSEETTTTEECC
T ss_pred EEEEEEECCCEEEEEEEECC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-CCCEECCCCEEEE
T ss_conf 89999987314999999089-959999997589889999999999999999854789876799992-6768689998982
Q ss_pred ----HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf ----02466899999999732687110383899998
Q gi|254780429|r 72 ----TGVRVSIAVARGISLVLKQPALGVGNLEVLAR 103 (206)
Q Consensus 72 ----TGlRigia~akgLa~~~~~pv~gvssle~la~ 103 (206)
.+.+-++...+-|...+++|++=.+--.+.|.
T Consensus 88 ~~nl~~~~~~~~l~~~l~~~~g~pV~i~NDa~aaal 123 (366)
T 3mcp_A 88 LPNFPSFRGGVALGPFLEDIFGIPVFINNDGSLFAY 123 (366)
T ss_dssp CTTCGGGTTCBCHHHHHHHHHCSCEEEECHHHHHHH
T ss_pred CCCCHHHHCCCCHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 787337545974899999987888686174889999
No 63
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus HB8} SCOP: c.95.1.2 c.95.1.2
Probab=57.13 E-value=9.3 Score=17.28 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-CCCCCH
Q ss_conf 68999899999999976099987866543037-854320
Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL-GPGSFT 72 (206)
Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~-GPGSFT 72 (206)
..-++.-..+.+++|++++++++|||.++++. .|...+
T Consensus 48 e~~~~la~~Aa~~aL~~ag~~~~dId~li~~s~~~~~~~ 86 (322)
T 1ub7_A 48 EYTSDLAFKAVEDLLRRHPGALEGVDAVIVATNTPDALF 86 (322)
T ss_dssp CCHHHHHHHHHHHHHHHSTTTTTTEEEEEEECSSCSEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCC
T ss_conf 999999999999999876998200426998437888789
No 64
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Probab=57.00 E-value=9.4 Score=17.27 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-----CCCHHH---HHHHHHHCCC
Q ss_conf 99899999999976099987866543037854320246689999999973268711-----038389---9998752146
Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPAL-----GVGNLE---VLARAHLDSH 109 (206)
Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~-----gvssle---~la~~~~~~~ 109 (206)
++.-..+.+++|+++|++++|||.|+++.-.|-+. -=....+++.|....++..+ +.+.+- -+|.......
T Consensus 99 ~~la~~Aa~~aL~~ag~~~~dIdllI~~t~t~~~~-P~~a~~v~~~Lgl~~~~~~~~~~~~aC~g~~~aL~~A~~~i~sg 177 (387)
T 3a5r_A 99 AELGKEAALKAIKEWGQPKSKITHLIVCCLAGVDM-PGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENN 177 (387)
T ss_dssp HHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCEE-SCHHHHHHHHTTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCC-CCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998499988991999966489889-98799999984689881355334782189999999999999719
Q ss_pred CCCEEEEE
Q ss_conf 78659998
Q gi|254780429|r 110 VGRPIMVL 117 (206)
Q Consensus 110 ~~~~i~~~ 117 (206)
..+.++++
T Consensus 178 ~~~~vLvV 185 (387)
T 3a5r_A 178 KGARVLIV 185 (387)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
T ss_conf 99806898
No 65
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase, transferase; 1.75A {Neurospora crassa} PDB: 3eut_A* 3euq_A*
Probab=56.57 E-value=7 Score=18.11 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9989999999997609998786654303785432024668999999997
Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISL 86 (206)
Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~ 86 (206)
++.-..+.+++|+++|++++|||.|.++...+.+. --.+..+++-+..
T Consensus 82 ~dma~~Aa~~aL~~ag~~p~dId~li~~t~t~~~~-p~~aa~v~~~l~~ 129 (379)
T 3euo_A 82 VPLAVEASRKAMAEARLVPAQITHMVSTTCTDSAN-PGYDHYVAKELGL 129 (379)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEEECSSCCCS-SCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCC-CCHHHHHHHHHCC
T ss_conf 99999999999998599989987789942037878-9879999998544
No 66
>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}
Probab=55.48 E-value=9.9 Score=17.11 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=53.8
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEE---------------------CCHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 2788621680127899977981399999984---------------------2268999899999999976099987866
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKN---------------------LGRGHAEHLMPAIDYALKDSRLEVSQVD 60 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~---------------------~~r~hs~~L~~~i~~lL~~~~~~~~~id 60 (206)
+||+|+.-+..+-+||++.+..+.+.+-..+ ....|... +..+.+.+.+.+ .+.+|+
T Consensus 3 kILvIN~GSSS~K~alf~~~~~~~l~~g~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~-~~~~i~ 80 (384)
T 3khy_A 3 EILVLNCGSSSVKFALINPHTSQSLVTGLAENIATKNCKVVFKAEHKIVKYLENGSYKDV-FEMLKDFLVENK-HLEKIV 80 (384)
T ss_dssp EEEEEEECSSCEEEEEEETTTTEEEEEEEEESTTSTTCEEEEESSSEEEEECTTCCHHHH-HHHHHHHHHHTT-CGGGEE
T ss_pred EEEEEECCHHHHHHEEEECCCCCEEEEEEEEECCCCCCEEEEECCCCEEEECCCCCHHHH-HHHHHHHHHHCC-CCCCEE
T ss_conf 499993766637147796899877888878651699846999648833554477899999-999999986369-855147
Q ss_pred HHHCCCCCC--CCHH-HHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 543037854--3202-4668999999997326871103838999
Q gi|254780429|r 61 RVVTALGPG--SFTG-VRVSIAVARGISLVLKQPALGVGNLEVL 101 (206)
Q Consensus 61 ~iav~~GPG--SFTG-lRigia~akgLa~~~~~pv~gvssle~l 101 (206)
++.--..+| .|++ .+|.-.+..-|-. -.|+.+.++.-.+
T Consensus 81 avGhRvVhgG~~~~~~~~v~~~~l~~l~~--~~~laplhnp~~l 122 (384)
T 3khy_A 81 AIGHRVVHGGQYFSKSVLINADSLEKIKA--CIALAPLHNPAHI 122 (384)
T ss_dssp EEEEEESCCTTTCSSCEECSHHHHHHHHH--TGGGSTTTHHHHH
T ss_pred EEEECCCCCCCCCCCEEEECHHHHHHHHH--CCCCCCCCCHHHH
T ss_conf 98302567887768609977999999996--5577765574567
No 67
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase, transferase; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3gwe_A
Probab=55.45 E-value=4.2 Score=19.54 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99989999999997609998786654303-78543202466899999999732687110
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTA-LGPGSFTGVRVSIAVARGISLVLKQPALG 94 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~-~GPGSFTGlRigia~akgLa~~~~~pv~g 94 (206)
-++.-..+.+++|++++++++|||.|+++ .-|..++.--.. -+.+.+....+++.+.
T Consensus 80 ~~dmA~~Aa~~aL~~agi~~~dIdllI~~t~t~~~~~p~~a~-~v~~~l~~~~~~~~~d 137 (365)
T 3gwa_A 80 AADLAYEAARKLFAQGAVGADQVDFVILCTQAPDYVLPTSAC-MLQHRLGIPTHAGALD 137 (365)
T ss_dssp HHHHHHHHHHHHHHTTSCCGGGCCEEEEEESSCSCSBSCHHH-HHHHHTTCCTTSEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHHH-HHHHHHCCCCCEEEEE
T ss_conf 999999999999997599989989999973379877980588-8765402689768976
No 68
>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=54.73 E-value=4.6 Score=19.27 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=30.9
Q ss_pred HEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 278999779813999999842268999899999999976099987866543037
Q gi|254780429|r 13 CSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206)
Q Consensus 13 ~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206)
++..++..++..++.... ...+ .+.+.+.|++.++++++|+.|.++=
T Consensus 35 ~~~~li~~~~~~iLIDtG---~~~~----~~~l~~~l~~~g~~~~~I~~Ii~TH 81 (221)
T 1ztc_A 35 STVVYLEHKDRRIIIDPG---NLSS----MDELEEKFSELGISPDDITDVLFTH 81 (221)
T ss_dssp CCEEEEEETTEEEEECCC---CGGG----HHHHHHHHHHHTCCGGGCCEEECSC
T ss_pred EEEEEEEECCEEEEEECC---CCCC----HHHHHHHHHHCCCCHHHCCEEEECC
T ss_conf 379999989999999199---9721----9999999998499968984999599
No 69
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide synthase, transferase; HET: COA; 1.60A {Aloe arborescens} PDB: 2d51_A 2d52_A*
Probab=49.30 E-value=12 Score=16.48 Aligned_cols=28 Identities=14% Similarity=-0.005 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 9899999999976099987866543037
Q gi|254780429|r 39 EHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206)
Q Consensus 39 ~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206)
+.-..+.+++|+++|++++|||.|+++.
T Consensus 117 ~La~~Aa~~AL~~ag~~~~dId~lI~~t 144 (406)
T 2d3m_A 117 ALGTEAAVKAIEEWGRPKSEITHLVFCT 144 (406)
T ss_dssp HHHHHHHHHHHHHHCSCGGGCCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEEC
T ss_conf 9999999999998097989998999986
No 70
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, lipid metabolism, structural genomics, NPPSFA; 2.10A {Aquifex aeolicus VF5}
Probab=49.10 E-value=12 Score=16.46 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 26899989999999997609998786654303785
Q gi|254780429|r 34 GRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGP 68 (206)
Q Consensus 34 ~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GP 68 (206)
+..-++.-...++++|+++++++++||.|.++..-
T Consensus 47 ~e~~~~La~~Aa~~~l~~~~~~~~~Id~li~~t~~ 81 (309)
T 2ebd_A 47 EETITYMATQAAKEALREANLSPEELDLIILATLT 81 (309)
T ss_dssp SCCHHHHHHHHHHHHHHHHTCCGGGCSEEEEECSS
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHCEEEEEECCC
T ss_conf 99889999999999888655897586499985269
No 71
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}
Probab=48.28 E-value=13 Score=16.38 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=21.7
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 99842268999899999999976099987866543037
Q gi|254780429|r 29 YFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206)
Q Consensus 29 ~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206)
+++..+...++.-..+.+++|++++++ ++|.+.++.
T Consensus 45 R~~a~de~~~dla~~Aa~~aL~~ag~~--~iD~li~~s 80 (331)
T 2x3e_A 45 RHIAGDLGSGDLALRAASAALASAGLE--RVDAVVLAT 80 (331)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHTCS--CCSEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEC
T ss_conf 887899997999999999987536776--656677601
No 72
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A*
Probab=47.34 E-value=8.4 Score=17.59 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 99899999999976099987866543037
Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206)
Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206)
...=..+++++|+++++++++||.|.|+.
T Consensus 53 ~tmA~~Aa~~lL~~~~i~p~dId~liv~T 81 (450)
T 2f82_A 53 ISMSFNAVTSLLEKYKIDPKQIGRLEVGS 81 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEEE
T ss_conf 99999999999997599989999999993
No 73
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=47.08 E-value=13 Score=16.26 Aligned_cols=61 Identities=16% Similarity=0.100 Sum_probs=42.4
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEE-EE---EECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
Q ss_conf 9278862168012789997798139999-99---8422689998999999999760999878665430
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGS-YF---KNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVT 64 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~-~~---~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav 64 (206)
|+|=-++|+..++.. +..++ .++.+ +. -...+.|++..+..+++.|+++|.+++||-.+-+
T Consensus 9 ~~i~~~~~~~~yS~a-V~~g~--~ifiSGq~~~~~~~i~~Q~~~~~~~i~~iL~~aG~~~~dVvkvtv 73 (128)
T 3kjj_A 9 MDIRYFGTTPRYSEA-VGANG--LIFLSGMVPENGETAAEQTADVLAQIDRWLAECGSDKAHVLDAVI 73 (128)
T ss_dssp CCEEEEEECSSCEEE-EEETT--EEEECCBCCSSCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred EEEEECCCCCCCCCE-EEECC--EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEE
T ss_conf 578876899997787-99999--999985089899769999999999999999985998635577878
No 74
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=46.97 E-value=13 Score=16.25 Aligned_cols=120 Identities=16% Similarity=0.095 Sum_probs=72.9
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEECCH-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC---HH
Q ss_conf 2788621680127899977981399999984226-----899989999999997609998786654303785432---02
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNLGR-----GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSF---TG 73 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r-----~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSF---TG 73 (206)
.+++||-....+.+++++.. ++++.+.....+. ...+.+...++++++..+....++..|.++. ||.+ +|
T Consensus 88 ~~igidig~~~i~~~l~d~~-g~vi~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgia~-pG~vd~~~g 165 (380)
T 2hoe_A 88 YVLGIEVTRDEIAACLIDAS-MNILAHEAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAA-PGPIDTERG 165 (380)
T ss_dssp EEEEEEECSSEEEEEEEETT-CCEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEE-SSCEETTTT
T ss_pred EEEEEEECCCEEEEEEECCC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE-CCCEECCCC
T ss_conf 89999999998999999499-9899999875798888899999999999999998542178646999996-864607857
Q ss_pred HH--------HHHHHHHHHHHHCCCCCCCCCHHHHHHH--HHHCCCCCCEEEEEECCCCC
Q ss_conf 46--------6899999999732687110383899998--75214678659998508714
Q gi|254780429|r 74 VR--------VSIAVARGISLVLKQPALGVGNLEVLAR--AHLDSHVGRPIMVLVSLFHQ 123 (206)
Q Consensus 74 lR--------igia~akgLa~~~~~pv~gvssle~la~--~~~~~~~~~~i~~~idArr~ 123 (206)
.- -++...+-|...+++|++=-+--.+.|. .........-+.+.+...-+
T Consensus 166 ~v~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~~~~~~i~~g~GiG 225 (380)
T 2hoe_A 166 IIIDPRNFPLSQIPLANLLKEKYGIEVWVENDADMGAVGEKWYTKRDDSFAWILTGKGIG 225 (380)
T ss_dssp EECCCSSCTTBTSCHHHHHHHHHCSEEEEEEHHHHHHHHHHHHTTCCSCEEEEEESSSCE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 594357888433547999999879988998274548999987435882499999537885
No 75
>3p4i_A Acetate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, no pathogenic species; 2.35A {Mycobacterium avium}
Probab=46.26 E-value=14 Score=16.18 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=47.4
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEE-EECC------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC--C-CC
Q ss_conf 927886216801278999779813999999-8422------689998999999999760999878665430378--5-43
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYF-KNLG------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALG--P-GS 70 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~-~~~~------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~G--P-GS 70 (206)
|+||+|+.-+..+-++|++.++........ +..+ ..|...+-. +.+.|.+.++..+.-+..+++-- + |.
T Consensus 13 ~kILviN~GSSS~K~alf~~~~~~~~~~g~~e~i~~~~~~~~~~~~~~~~-il~~L~~~~~~~~~~~i~avGhRvVhGG~ 91 (392)
T 3p4i_A 13 RRVLVINSGSSSLKFQLVDPESGVAASTGIVERIGEESSPVPDHDAALRR-AFDMLAGDGVDLNTAGLVAVGHRVVHGGN 91 (392)
T ss_dssp CEEEEEEECSSCEEEEEECTTTCCEEEEEEECCC--CCCSCCSHHHHHHH-HHHHHHHTTCCTTTTTEEEEEEEESCCTT
T ss_pred CEEEEECCCCHHHEEEEEECCCCCEECCCCEEECCCCCCCCCCHHHHHHH-HHHHHHHCCCCCCCCCEEEEECCCCCCCC
T ss_conf 87999947614056368938998565025653228988878899999999-99999865997761246898234037887
Q ss_pred -CHH-HHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf -202-466899999999732687110383
Q gi|254780429|r 71 -FTG-VRVSIAVARGISLVLKQPALGVGN 97 (206)
Q Consensus 71 -FTG-lRigia~akgLa~~~~~pv~gvss 97 (206)
|++ .||.-.+.+.|.. -.|+.+.+.
T Consensus 92 ~~~~~~~i~~~v~~~l~~--~~~laplHn 118 (392)
T 3p4i_A 92 TFYRPTVLDDAVIARLHE--LSELAPLHN 118 (392)
T ss_dssp TCCSCEECCHHHHHHHGG--GTTTCTTTH
T ss_pred CCCCCEECCHHHHHHHHH--HCCCCCCCC
T ss_conf 756778856999999996--042686658
No 76
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A
Probab=43.94 E-value=15 Score=15.95 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999899999999976099987866543037854320246689999999973268711038
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG 96 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs 96 (206)
-++.-..+.+++|++++++++|||.|.++.-.+.+..--.+.-. +.+--..+++.+.++
T Consensus 51 ~~~la~~Aa~~aL~~a~~~~~dId~li~~s~~~~~~~~~~a~~~-~~~l~~~~~~~~di~ 109 (313)
T 1zow_A 51 TSDLAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTVANML-QERLGTGKVASMDQL 109 (313)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSCSCSSSCHHHHH-HHHHTCCSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCHHHHHH-HHHHCCCCCEEEEHH
T ss_conf 99999999999998849997786579984103565782478999-875237866587510
No 77
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysis, enzyme stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=43.61 E-value=15 Score=15.92 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCH
Q ss_conf 68999899999999976099987866543037854320
Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFT 72 (206)
Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFT 72 (206)
+.-++.|+.-..+.|++.|....+++.+-| ||+|=
T Consensus 24 ~~I~~~l~~ga~~~l~~~g~~~~~i~~~~V---PGa~E 58 (154)
T 1hqk_A 24 HALVDRLVEGAIDCIVRHGGREEDITLVRV---PGSWE 58 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEEE---SSGGG
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHCEEEEEC---CCHHH
T ss_conf 899999999999999985998210389986---95889
No 78
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type III, transferase; 1.90A {Marchantia polymorpha}
Probab=42.73 E-value=13 Score=16.34 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 99899999999976099987866543037854
Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPG 69 (206)
Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPG 69 (206)
.+.-..+.+++|+++|++++|||.|+++.--|
T Consensus 121 ~~La~~Aa~~AL~~ag~~~~dId~lI~~t~t~ 152 (413)
T 2p0u_A 121 PKLAKEASMNAIKEWGRPKSEITHIVMATTSG 152 (413)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGCCEEEEEESSC
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCC
T ss_conf 99999999999998298989998999984589
No 79
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=42.63 E-value=8.6 Score=17.51 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHH
Q ss_conf 8665430378543202466899999999732687110383-89999875
Q gi|254780429|r 58 QVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN-LEVLARAH 105 (206)
Q Consensus 58 ~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss-le~la~~~ 105 (206)
+.|+|+++=||||.+-.....-..+- +..++|++|++- +++||...
T Consensus 47 ~~dgiILsgGPg~p~~~~~~~~~~~~--~~~~iPiLGIC~G~Q~la~~~ 93 (192)
T 1i1q_B 47 KNPVLMLSPGPGVPSEAGCMPELLTR--LRGKLPIIGICLGHQAIVEAY 93 (192)
T ss_dssp SSEEEEECCCSSCGGGSTTHHHHHHH--HBTTBCEEEETHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCCCCCHHHHHH--HHCCCCHHHHCHHHHHHHHHC
T ss_conf 96969981999871433133799999--856998145387679999874
No 80
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A
Probab=42.10 E-value=13 Score=16.39 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHH----HCCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 99899999999976----0999878665430378-543202466899999999732687110383
Q gi|254780429|r 38 AEHLMPAIDYALKD----SRLEVSQVDRVVTALG-PGSFTGVRVSIAVARGISLVLKQPALGVGN 97 (206)
Q Consensus 38 s~~L~~~i~~lL~~----~~~~~~~id~iav~~G-PGSFTGlRigia~akgLa~~~~~pv~gvss 97 (206)
.+..-..+.+++++ +++++++||.+.++.- ++. .|-.++--++-.-....++|.+.|+.
T Consensus 36 ~dL~~~~~~~al~ra~~~a~i~~~~Id~v~~G~~~~~g-~g~~~ar~~~l~~g~~~~vp~~~Ve~ 99 (393)
T 1afw_A 36 DYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVG-AGATEHRAACLASGIPYSTPFVALNR 99 (393)
T ss_dssp HHHHHHHHHHHHHTSCHHHHTCGGGCCCEEEECSSSBG-GGHHHHHHHHHHTTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHCCEEEEECCCCCC-CCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 99999999999972885348998899999996688746-55379999999779998774057645
No 81
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A*
Probab=40.73 E-value=12 Score=16.64 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCCCCH
Q ss_conf 6899989999999997609998786654303-7854320
Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTA-LGPGSFT 72 (206)
Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~-~GPGSFT 72 (206)
..-++.-..+.+++|++++++++|||.+.++ .-|..++
T Consensus 50 e~~~dla~~Aa~~aL~~a~i~~~dId~li~~s~~~~~~~ 88 (321)
T 3il6_A 50 ENTSDLCHQVAKQLLEKSGKQASEIDFILVATVTPDFNM 88 (321)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSCSCSS
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCC
T ss_conf 997999999999999874999778948999703799878
No 82
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=39.71 E-value=17 Score=15.53 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9989999999997
Q gi|254780429|r 38 AEHLMPAIDYALK 50 (206)
Q Consensus 38 s~~L~~~i~~lL~ 50 (206)
++.|-..|.++|.
T Consensus 104 AN~La~~iA~~lg 116 (336)
T 3eeq_A 104 ANDIARELSVILN 116 (336)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999998719
No 83
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=38.63 E-value=17 Score=15.59 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCH
Q ss_conf 268999899999999976099987866543037854320
Q gi|254780429|r 34 GRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFT 72 (206)
Q Consensus 34 ~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFT 72 (206)
...-++.|+.-..+.|++.|+...+++.+-| ||+|=
T Consensus 27 n~~I~~~Ll~ga~~~L~~~g~~~~~i~~~~V---PGa~E 62 (168)
T 1ejb_A 27 NRVIIDALVKGAIERMASLGVEENNIIIETV---PGSYE 62 (168)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCGGGEEEEEC---SSGGG
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC---CCHHH
T ss_conf 8899999999999999985998224699977---82888
No 84
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Probab=38.60 E-value=9.6 Score=17.21 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 9998999999999760999878665430378
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALG 67 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~G 67 (206)
-++.-..+++++|++++++++|||.+.++.-
T Consensus 61 ~~~la~~Aa~~aL~~ag~~~~dId~li~~t~ 91 (335)
T 1u6e_A 61 AASMATEACRRALSNAGLSAADIDGVIVTTN 91 (335)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEEECS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 9999999999999866989645885999430
No 85
>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens}
Probab=36.46 E-value=10 Score=17.01 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=37.5
Q ss_pred EEEEECCCHHHEEEEEE-----C-CCCEE-----EEEEEEECCHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 78862168012789997-----7-98139-----99999842268-999899999999976099987866543037
Q gi|254780429|r 3 VLALDTTGADCSVAIYD-----S-HAGRI-----LGSYFKNLGRG-HAEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206)
Q Consensus 3 iLaIdTs~~~~sval~~-----~-~~~~~-----~~~~~~~~~r~-hs~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206)
|.+|....+...|..-+ + +.+++ +.++....+.. -+..=..+..++|+++++++++||.|.|+.
T Consensus 27 I~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~~~Gi~~r~v~~~~Ed~~tmA~~Aa~~aL~~a~i~p~~Id~li~aT 102 (478)
T 2p8u_A 27 IVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGT 102 (478)
T ss_dssp EEEEEEECCSEEEEHHHHHHHHTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEEEC
T ss_pred EEEEEEECCCEEECHHHHHHHHCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEE
T ss_conf 9899995788577499999885979899987428726774899999999999999999997599989999999991
No 86
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A*
Probab=36.12 E-value=20 Score=15.17 Aligned_cols=49 Identities=18% Similarity=0.109 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 9999997609998786654303785432024668999999997326871103838999
Q gi|254780429|r 44 AIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVL 101 (206)
Q Consensus 44 ~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvssle~l 101 (206)
+++..+...+++..+ .-+-+|+|||.+|.+-+. ...++.+.+|..-+..
T Consensus 110 l~~~e~~~~~l~~g~-rVLdiGcG~g~~t~~~~a--------~~~g~~V~gIDisp~~ 158 (298)
T 3fpf_A 110 LLKNEAALGRFRRGE-RAVFIGGGPLPLTGILLS--------HVYGMRVNVVEIEPDI 158 (298)
T ss_dssp HHHHHHHHTTCCTTC-EEEEECCCSSCHHHHHHH--------HTTCCEEEEEESSHHH
T ss_pred HHHHHHHHCCCCCCC-EEEEEECCCHHHHHHHHH--------HCCCCEEEEEECCHHH
T ss_conf 999999854899999-899960685699999998--------5689989999699999
No 87
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A*
Probab=35.99 E-value=20 Score=15.16 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=36.7
Q ss_pred CCEEEEECCCHHHEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCH
Q ss_conf 927886216801278999779813999999842268999899999999976099987866543037854320
Q gi|254780429|r 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFT 72 (206)
Q Consensus 1 M~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFT 72 (206)
|+++-=+.+.+...++++... | .+.-++.|+.-..+.|.+.|++..+++-+-| ||+|=
T Consensus 1 m~~~~g~~~~~~~rI~IV~s~---------~--n~~I~~~l~~~a~~~l~~~g~~~~~i~v~~V---PGa~E 58 (154)
T 1rvv_A 1 MNIIQGNLVGTGLKIGIVVGR---------F--NDFITSKLLSGAEDALLRHGVDTNDIDVAWV---PGAFE 58 (154)
T ss_dssp CEEECCCSCCTTCCEEEEEES---------T--THHHHHHHHHHHHHHHHHTTCCGGGEEEEEE---SSGGG
T ss_pred CCEEECCCCCCCCEEEEEEEC---------C--CHHHHHHHHHHHHHHHHHCCCCHHHCEEEEC---CCHHH
T ss_conf 965755557899999999802---------8--7899999999999999985998655169983---86317
No 88
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Probab=35.33 E-value=20 Score=15.09 Aligned_cols=34 Identities=18% Similarity=0.019 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHH--HHCCCCCCC
Q ss_conf 9998999999999760999878665--430378543
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDR--VVTALGPGS 70 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~--iav~~GPGS 70 (206)
.....+-+.++.++++|+.-.+.+. +.++.|-|+
T Consensus 83 ~~~~~~~a~~~Al~dag~~~~~~~~~gv~vg~~~g~ 118 (416)
T 2wge_A 83 VQRMGKLLGGQLWESAGSPEVDPDRFAVVVGTGLGG 118 (416)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCGGGEEEEEECCSCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCC
T ss_conf 999999999999997368777810012387415676
No 89
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, structural genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum atcc 12472} SCOP: c.55.1.5 c.55.1.5
Probab=35.02 E-value=20 Score=15.06 Aligned_cols=102 Identities=10% Similarity=0.020 Sum_probs=61.7
Q ss_pred CC-EEEEECCCHHHEEEEEECCCCEEEEEEEEECC------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHH
Q ss_conf 92-78862168012789997798139999998422------689998999999999760999878665430378543202
Q gi|254780429|r 1 MI-VLALDTTGADCSVAIYDSHAGRILGSYFKNLG------RGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTG 73 (206)
Q Consensus 1 M~-iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~------r~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTG 73 (206)
|+ +|+||--+..+.+++++.+ ++++........ ...-+.+...++++++++++...++.....+.+-....
T Consensus 10 m~y~iGIDiGgT~i~~~l~d~~-G~il~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~gi~~~~~~~~~~~~~~~g~~- 87 (305)
T 1zc6_A 10 IRYLIGVDGGGTGTRIRLHASD-GTPLAMAEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGLSGVH- 87 (305)
T ss_dssp CCEEEEEEECSSCEEEEEEETT-CCEEEEEEESCCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEESCCC-
T ss_pred CCEEEEEECCCCEEEEEEECCC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC-
T ss_conf 8689999928100899999799-98999999669985669999999999999999997499965433233202567766-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 46689999999973268711038389999875
Q gi|254780429|r 74 VRVSIAVARGISLVLKQPALGVGNLEVLARAH 105 (206)
Q Consensus 74 lRigia~akgLa~~~~~pv~gvssle~la~~~ 105 (206)
-...............|+.-.+...+.+...
T Consensus 88 -~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~ 118 (305)
T 1zc6_A 88 -NRQWAGEFESQAPGFARLSLATDGYTTLLGA 118 (305)
T ss_dssp -TTSHHHHHHHTCCCCSEEEEECHHHHHHHHH
T ss_pred -CCHHHHHHHHHHCCCCCEEEEHHHHHHHHHH
T ss_conf -4204788888643687377603599998633
No 90
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=34.58 E-value=21 Score=15.02 Aligned_cols=59 Identities=10% Similarity=0.078 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999899999999976099987866543037854320246689999999973268711038
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVG 96 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvs 96 (206)
-++.-..+.+++|++++++++|||.|.++.--+.++.=-.+.-+.+-+ ...+++.+.++
T Consensus 58 ~~dla~~Aa~~aL~~ag~~~~dId~li~~t~~~~~~~~~~a~~v~~~l-~~~~~~~~d~~ 116 (323)
T 3il3_A 58 VATMGFEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLL-NIDDAISFDLA 116 (323)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCCEEEEECSCCSCSSSCHHHHHHHHT-TCSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEEECCCCCCCCCHHHHHHHHHC-CCCCCEEEEHH
T ss_conf 999999999998753488977853899713578878986999999844-69993687522
No 91
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase, structural genomics, NPPSFA; HET: FAD NAD; 1.80A {Thermus thermophilus HB8}
Probab=33.95 E-value=15 Score=15.91 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCCCC
Q ss_conf 99999999760999878665430378543
Q gi|254780429|r 42 MPAIDYALKDSRLEVSQVDRVVTALGPGS 70 (206)
Q Consensus 42 ~~~i~~lL~~~~~~~~~id~iav~~GPGS 70 (206)
.|.+.++.++.|+++++|. +.||+.
T Consensus 3 sPaarkla~e~gidl~~i~----GsG~~G 27 (40)
T 2eq7_C 3 MPAAERLMQEKGVSPAEVQ----GTGLGG 27 (40)
T ss_dssp CHHHHHHHHHTTCCTTTSC----CCSSSS
T ss_pred CHHHHHHHHHCCCCHHHCC----CCCCCC
T ss_conf 9899999999399998871----789999
No 92
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Probab=33.19 E-value=22 Score=14.87 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99989999999997609998786654303785432024668999999997
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISL 86 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~ 86 (206)
.++.-..+.+++|+++++++++||.|+++.--+.|..--...-+++.|..
T Consensus 51 ~~~la~~Aa~~aL~~~~i~~~~Id~li~~s~t~~~~~p~~a~~v~~~Lgl 100 (317)
T 1hnj_A 51 VSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI 100 (317)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSCSSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCCHHHHHHHHCCC
T ss_conf 99999999999998739996786389863042666776548999985697
No 93
>2v4w_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.7A {Homo sapiens} PDB: 2wya_A*
Probab=32.37 E-value=14 Score=16.22 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 999899999999976099987866543037
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206)
-+..=..+++++|+++++++++||.|.|+.
T Consensus 54 ~~~mA~~Aa~~~L~~~~i~~~~Id~Li~aT 83 (460)
T 2v4w_A 54 INSLCLTVVQRLMERIQLPWDSVGRLEVGT 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEEE
T ss_conf 999999999999987398989999999993
No 94
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris}
Probab=30.16 E-value=25 Score=14.55 Aligned_cols=34 Identities=18% Similarity=0.046 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 8999899999999976099987866543037854
Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPG 69 (206)
Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPG 69 (206)
.-++.-..+.+++|+++|++++|||.|+++.-=+
T Consensus 116 ~~~~ma~~AA~~AL~~ag~~~~dId~lI~at~t~ 149 (392)
T 3led_A 116 ILAEMAVTAAEQAIERWGKPRERIGAVLCACSNM 149 (392)
T ss_dssp HHHHHHHHHHHHHHHHHCSCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCC
T ss_conf 8999999999999998399988996999976779
No 95
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG0251, putative translation initiation inhibitor, structural genomics, PSI; 2.15A {Streptococcus pyogenes m1 gas} SCOP: d.79.1.1
Probab=30.02 E-value=25 Score=14.53 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
Q ss_conf 689998999999999760999878665430
Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVT 64 (206)
Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav 64 (206)
..|.+..+..|+++|+++|.+++|+=.+-+
T Consensus 39 ~~Q~~~~~~ni~~iL~~aG~~~~dVvk~tv 68 (126)
T 2ewc_A 39 ESQINGAFDEMERRLALVGLTLDAVVQMDC 68 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHEEEEE
T ss_conf 999999999999999985999899348999
No 96
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure initiative; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=28.15 E-value=26 Score=14.36 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 668999999997326871103838
Q gi|254780429|r 75 RVSIAVARGISLVLKQPALGVGNL 98 (206)
Q Consensus 75 Rigia~akgLa~~~~~pv~gvssl 98 (206)
=.|.++=-|+++++|+|++++.+=
T Consensus 83 D~GT~~EiG~A~algkpvi~~~~D 106 (162)
T 3ehd_A 83 DAGVASEIGVAYAKGIPVVALYTD 106 (162)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 988899999999869959999635
No 97
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=28.01 E-value=27 Score=14.31 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=37.1
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEE-ECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC-CCCC
Q ss_conf 278862168012789997798139999998-422689998999999999760999878665430-3785
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFK-NLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVT-ALGP 68 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~-~~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav-~~GP 68 (206)
|+|.||--+.....|++++++ ++..... .......+.+...+..++.. ..++++.+.+ ++.|
T Consensus 4 M~L~iDiGNT~ik~~l~~~~~--~~~~~~~~t~~~~~~de~~~~l~~~~~~---~~~~i~~v~isSVvp 67 (249)
T 3bex_A 4 MYLLVDVGNTHSVFSITEDGK--TFRRWRLSTGVFQTEDELFSHLHPLLGD---AMREIKGIGVASVVP 67 (249)
T ss_dssp EEEEEEECSSEEEEEEESSSS--SCEEEEEECCTTCCHHHHHHHHHHHHGG---GGGGEEEEEEEESCH
T ss_pred CEEEEEECCCCEEEEEEECCE--EEEEEEECCCCCCCHHHHHHHHHHHHHH---HHHHCCEEEEEEECC
T ss_conf 199999976602899998999--9999996078767879999999998534---454322024435426
No 98
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.30A {Porphyromonas gingivalis W83} SCOP: c.55.1.5 c.55.1.5
Probab=28.00 E-value=27 Score=14.31 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=34.8
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEEEC------CHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHH
Q ss_conf 27886216801278999779813999999842------2689-9989999999997609998786654303785432024
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFKNL------GRGH-AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGV 74 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~~~------~r~h-s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGl 74 (206)
|||++|-=+..|..+|.++ ++++.+..... ++.. .+.|...+.+.+.+.+. +++.+.++ +-|..+.-
T Consensus 1 MiL~vDgGGTKT~~~l~~~--g~~i~~~~~~~~N~~~~~~~~~~~~i~~~i~~~l~~~~~---~~~~i~~~-~aG~~~~~ 74 (291)
T 1zbs_A 1 MILIGDSGSTKTDWCIAKE--GKSLGRFQTSGINPFQQDRNEIDTALRSEVLPAIGQKAS---SIRAVYFY-GAGCTPAK 74 (291)
T ss_dssp CEEEEEECSSEEEEEEEET--TEEEEEEEEECCCTTTSCHHHHHHHHTTTTHHHHTTSTT---TCCEEEEE-ETTCCTTT
T ss_pred CEEEEEECHHHEEEEEECC--CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCEEEEE-EECCCHHH
T ss_conf 9899993632578999989--978999974888820179999999999999999863688---84169999-83375333
No 99
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=27.99 E-value=11 Score=16.92 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 999999760999878665430378543202466899999999732687110383
Q gi|254780429|r 44 AIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGN 97 (206)
Q Consensus 44 ~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvss 97 (206)
-++++++..++++++-.++=++..||.||=. +.......+++|.-
T Consensus 24 KL~~al~~f~i~~~gk~~lDiGaStGGFTd~---------lLq~GA~~V~aVDV 68 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDV---------MLQNGAKLVYALDV 68 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHH---------HHHTTCSEEEEECS
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCHHHHH---------HHHCCCCEEEEEEC
T ss_conf 9999999779986899899858898589999---------99809878999943
No 100
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=27.90 E-value=23 Score=14.74 Aligned_cols=71 Identities=14% Similarity=0.303 Sum_probs=34.9
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCCC--------H--------HHHHHHHCCCCCCCCHHHH------HHHHH----HHHHH
Q ss_conf 422689998999999999760999--------8--------7866543037854320246------68999----99999
Q gi|254780429|r 32 NLGRGHAEHLMPAIDYALKDSRLE--------V--------SQVDRVVTALGPGSFTGVR------VSIAV----ARGIS 85 (206)
Q Consensus 32 ~~~r~hs~~L~~~i~~lL~~~~~~--------~--------~~id~iav~~GPGSFTGlR------igia~----akgLa 85 (206)
...+.|++.....+.++-+..+.. + .-.|.|-|++||||---.| +...+ ..-.+
T Consensus 124 D~ahg~~~~~~~~ik~~r~~~~~~vi~GNVaT~e~a~~L~~aGAD~VkVGiG~Gs~CtTr~~tGvg~pq~sai~~~~~~~ 203 (361)
T 3khj_A 124 DSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVA 203 (361)
T ss_dssp CCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 28988514899999998602798868655388899999997199889973406855552003155783688999999986
Q ss_pred HHCCCCCCC---CCHHHHHH
Q ss_conf 732687110---38389999
Q gi|254780429|r 86 LVLKQPALG---VGNLEVLA 102 (206)
Q Consensus 86 ~~~~~pv~g---vssle~la 102 (206)
...++|++. +.+---++
T Consensus 204 ~~~~vpIIADGGi~~~gdi~ 223 (361)
T 3khj_A 204 SKFGIPIIADGGIRYSGDIG 223 (361)
T ss_dssp HHHTCCEEEESCCCSHHHHH
T ss_pred CCCCCCEEECCCCCCCCHHH
T ss_conf 04788779558836467199
No 101
>1ysl_A HMG-COA synthase; thiolase family, coenzymea, lyase; HET: CSD COA; 1.90A {Enterococcus faecalis} PDB: 1ysl_B* 1x9e_A 2hdb_A*
Probab=27.87 E-value=27 Score=14.30 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 9998999999999760999878665430378543202466
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRV 76 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRi 76 (206)
..+.+...++++|++.+++++|+|.+++-. |..+.+.+.
T Consensus 224 ~~~~~~~~~~~~l~~~g~~~~did~~i~Hq-p~~~~~~k~ 262 (402)
T 1ysl_A 224 YIQSFAQVWDEHKKRTGLDFADYDALAFHI-PYTKMGKKA 262 (402)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCSEEEECC-SSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHCEEEECC-CCHHHHHHH
T ss_conf 999999999999998499968836687357-870778999
No 102
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=27.73 E-value=9 Score=17.40 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=21.1
Q ss_pred HHHHHHHCCCHHHHHHHHCCCCCCCCHHH
Q ss_conf 99997609998786654303785432024
Q gi|254780429|r 46 DYALKDSRLEVSQVDRVVTALGPGSFTGV 74 (206)
Q Consensus 46 ~~lL~~~~~~~~~id~iav~~GPGSFTGl 74 (206)
.+++++-.++++. ..+=.+++||+||=.
T Consensus 72 ~~~~ekf~l~~~g-~VVDLGas~GGwTqv 99 (276)
T 2wa2_A 72 AWIDERGGVELKG-TVVDLGCGRGSWSYY 99 (276)
T ss_dssp HHHHHTTSCCCCE-EEEEESCTTCHHHHH
T ss_pred HHHHHHCCCCCCC-EEEECCCCCCCHHHH
T ss_conf 9999837977688-489807788709999
No 103
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein structure initiative; 1.49A {Pseudomonas aeruginosa}
Probab=26.91 E-value=28 Score=14.19 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 6899989999999997609998786654303
Q gi|254780429|r 35 RGHAEHLMPAIDYALKDSRLEVSQVDRVVTA 65 (206)
Q Consensus 35 r~hs~~L~~~i~~lL~~~~~~~~~id~iav~ 65 (206)
..|.+..+..|+++|+++|.++++|=.+-+=
T Consensus 36 ~~Q~~~~~~ni~~~L~~aG~~~~dvvkvtvy 66 (122)
T 3k12_A 36 QDQTRQILENIDRLLQSVGSDRGQVLSVRIL 66 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 9999999999999997579961105799999
No 104
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreductase; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=26.65 E-value=20 Score=15.16 Aligned_cols=10 Identities=0% Similarity=-0.174 Sum_probs=3.1
Q ss_pred EEEEEEECCH
Q ss_conf 9999984226
Q gi|254780429|r 26 LGSYFKNLGR 35 (206)
Q Consensus 26 ~~~~~~~~~r 35 (206)
+++......+
T Consensus 136 ~~ql~~~~~~ 145 (368)
T 2nli_A 136 WFQIYMAKDD 145 (368)
T ss_dssp EEEECCBSSH
T ss_pred EEEEECCCHH
T ss_conf 8887433057
No 105
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=26.63 E-value=24 Score=14.63 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 466899999999732687110383
Q gi|254780429|r 74 VRVSIAVARGISLVLKQPALGVGN 97 (206)
Q Consensus 74 lRigia~akgLa~~~~~pv~gvss 97 (206)
.=-|.++=-|+|+++++|++++.+
T Consensus 94 ~D~GTa~ElG~A~algKPvv~~~~ 117 (167)
T 1s2d_A 94 LDDGSAFXIGFMRAMHKPVILVPF 117 (167)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 983189999999986994899966
No 106
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=26.54 E-value=22 Score=14.85 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=4.7
Q ss_pred CCCCCCCCEEC
Q ss_conf 74648740006
Q gi|254780429|r 190 SSPFPSPIYLR 200 (206)
Q Consensus 190 ~~~~~~PlYlR 200 (206)
+...+.|-|||
T Consensus 344 ~i~dL~~~~l~ 354 (380)
T 1p4c_A 344 DITSLSPDYLQ 354 (380)
T ss_dssp BGGGCCGGGEE
T ss_pred CHHHCCHHHEE
T ss_conf 96785998841
No 107
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Wolinella succinogenes}
Probab=26.31 E-value=17 Score=15.57 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=6.3
Q ss_pred HHCCCCEEEECCC
Q ss_conf 4227775998271
Q gi|254780429|r 151 EVDNFEGEIVGSG 163 (206)
Q Consensus 151 ~~~~~~~~~~g~~ 163 (206)
...+.+..++|..
T Consensus 98 ~~~~~dliV~G~~ 110 (138)
T 3idf_A 98 EAKDYNLLIIGSS 110 (138)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEECC
T ss_conf 7502558999289
No 108
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=25.75 E-value=23 Score=14.71 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=5.0
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 99999973268711
Q gi|254780429|r 80 VARGISLVLKQPAL 93 (206)
Q Consensus 80 ~akgLa~~~~~pv~ 93 (206)
.++.+...++.|++
T Consensus 216 ~v~~~~~~~~~~~~ 229 (370)
T 1gox_A 216 DVAWLQTITSLPIL 229 (370)
T ss_dssp HHHHHHHHCCSCEE
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999974578379
No 109
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=25.70 E-value=29 Score=14.05 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99899999999976099987866543037854320246689999999973268711038389999
Q gi|254780429|r 38 AEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLA 102 (206)
Q Consensus 38 s~~L~~~i~~lL~~~~~~~~~id~iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvssle~la 102 (206)
.+.+...|++.|++.++++.+|+.|+...---.-.|| ..++..+++|+..++.=++-.
T Consensus 24 ~e~i~~ai~~al~~~~l~~~~i~~iASid~K~dE~gl-------~~~A~~l~~p~~~~~~e~L~~ 81 (145)
T 2w6k_A 24 AEHLRALLERTLGEHGRSLAELDALASIDGKRDEPGL-------RQLATLLERPVHFLAPAVLHD 81 (145)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCEEEEECSSSCCHHH-------HHHHHHHTSCEEEECHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCCCHHH-------HHHHHHHCCCEEEECHHHHHH
T ss_conf 9999999999999859997883334612213798999-------999999399859868999974
No 110
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=25.42 E-value=29 Score=14.09 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=22.4
Q ss_pred HHHHHHH-HHHHHHHHHCCCHHHHHHHHCCCCCCCCH
Q ss_conf 9998999-99999976099987866543037854320
Q gi|254780429|r 37 HAEHLMP-AIDYALKDSRLEVSQVDRVVTALGPGSFT 72 (206)
Q Consensus 37 hs~~L~~-~i~~lL~~~~~~~~~id~iav~~GPGSFT 72 (206)
-.+.|+. .++++.+..++...+++.+-| ||+|=
T Consensus 31 i~~~Ll~ga~~~l~~~~g~~~~~i~~~~V---PGa~E 64 (159)
T 1kz1_A 31 AIEPLVKGAVETMIEKHDVKLENIDIESV---PGSWE 64 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEC---SSGGG
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHEEEEEC---CCHHH
T ss_conf 99999999999999965999545489983---84878
No 111
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1}
Probab=25.28 E-value=30 Score=14.00 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=39.8
Q ss_pred ECCCHHHEEEEEECC--CCEEEEEEEEECC-------------------------HHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 216801278999779--8139999998422-------------------------6899989999999997609998786
Q gi|254780429|r 7 DTTGADCSVAIYDSH--AGRILGSYFKNLG-------------------------RGHAEHLMPAIDYALKDSRLEVSQV 59 (206)
Q Consensus 7 dTs~~~~sval~~~~--~~~~~~~~~~~~~-------------------------r~hs~~L~~~i~~lL~~~~~~~~~i 59 (206)
=||.+-.-+|+++-+ .-+++...+..-+ +.-++.....|.+++++++++.++|
T Consensus 13 GTS~DGiD~alv~~dg~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~a~~i~~~i~~~~~~~~~I 92 (370)
T 3cqy_A 13 GTSMDGVDAVLVDFAGEQPQLIGTHTETIPTHLLKGLQRLCLPGTDEINRLGRLDRSVGKLFALAVNNLLAKTKIAKDEI 92 (370)
T ss_dssp CTTCCCEEEEEEECSSSSCEEEEEEEECCCHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred CHHHHHHEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 53155360489998088269986505338999999999850269875999999999999999999999976411454453
Q ss_pred HHHHCC
Q ss_conf 654303
Q gi|254780429|r 60 DRVVTA 65 (206)
Q Consensus 60 d~iav~ 65 (206)
|.|++-
T Consensus 93 d~IG~H 98 (370)
T 3cqy_A 93 IAIGSH 98 (370)
T ss_dssp EEEEEE
T ss_pred EEECCC
T ss_conf 277479
No 112
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A*
Probab=24.10 E-value=31 Score=13.85 Aligned_cols=92 Identities=18% Similarity=0.176 Sum_probs=50.0
Q ss_pred CCHHHEEEEEECCCCEEEEEEEE--------ECCHHHHHHHHHHHHHHHHH--HCCCHHHHHHHH------CCCCCCCCH
Q ss_conf 68012789997798139999998--------42268999899999999976--099987866543------037854320
Q gi|254780429|r 9 TGADCSVAIYDSHAGRILGSYFK--------NLGRGHAEHLMPAIDYALKD--SRLEVSQVDRVV------TALGPGSFT 72 (206)
Q Consensus 9 s~~~~sval~~~~~~~~~~~~~~--------~~~r~hs~~L~~~i~~lL~~--~~~~~~~id~ia------v~~GPGSFT 72 (206)
.++..+|-+..++...-+.+..- ..+.-.++.+.+.|++.+.- .|.++.+++.+. ...|+--.+
T Consensus 49 ~~e~i~V~i~l~DG~~G~GEcaav~~~g~gg~dpl~~a~~~i~~ie~~laP~LiG~d~~~~~~l~~~l~~~~~~~~~~~~ 128 (413)
T 1kcz_A 49 KGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEEFDKMTVNGNRLHT 128 (413)
T ss_dssp ECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHCEETTEECCH
T ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 47169999997899889985314567777666643238999999986320886399811699999999887537840678
Q ss_pred HHHHHH--HHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 246689--999999973268711038389999875
Q gi|254780429|r 73 GVRVSI--AVARGISLVLKQPALGVGNLEVLARAH 105 (206)
Q Consensus 73 GlRigi--a~akgLa~~~~~pv~gvssle~la~~~ 105 (206)
.+|.|+ +.....+...++|++ +.++...
T Consensus 129 Air~GVs~Al~Da~Ak~~g~pL~-----~lLGg~~ 158 (413)
T 1kcz_A 129 AIRYGITQAILDAVAKTRKVTMA-----EVIRDEY 158 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHH-----HHHHHHH
T ss_conf 99998999999999988299399-----9841240
No 113
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI derivative, unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=23.79 E-value=32 Score=13.82 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
Q ss_conf 22689998999999999760999878665430
Q gi|254780429|r 33 LGRGHAEHLMPAIDYALKDSRLEVSQVDRVVT 64 (206)
Q Consensus 33 ~~r~hs~~L~~~i~~lL~~~~~~~~~id~iav 64 (206)
.-..|.+..+..|+++|+++|.+++||=.+-+
T Consensus 40 d~~~Q~~~~~~ni~~iL~~aG~s~~dVvk~tv 71 (149)
T 3i7t_A 40 DIAAQTRDALRRIEIALGQAGATLADVVRTRI 71 (149)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 99999999999999999985998111478999
No 114
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, protein structure initiative NDRT; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=23.51 E-value=32 Score=13.79 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 66899999999732687110383
Q gi|254780429|r 75 RVSIAVARGISLVLKQPALGVGN 97 (206)
Q Consensus 75 Rigia~akgLa~~~~~pv~gvss 97 (206)
=.|.++=-|.++++++|++++.+
T Consensus 84 D~GT~~EiG~A~algKPVv~~~~ 106 (161)
T 2f62_A 84 DCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCHHHHHHHHHHCCCEEEEEEC
T ss_conf 98889999999987995999966
No 115
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching, alternative binding site, product complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=23.49 E-value=20 Score=15.17 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=23.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCC-------CCCCCHHHH
Q ss_conf 99999976099987866543037-------854320246
Q gi|254780429|r 44 AIDYALKDSRLEVSQVDRVVTAL-------GPGSFTGVR 75 (206)
Q Consensus 44 ~i~~lL~~~~~~~~~id~iav~~-------GPGSFTGlR 75 (206)
.+.+.|++.|++++||+.|+++= |-.-|++-+
T Consensus 86 ~l~~~L~~~G~~p~dI~~Vi~TH~H~DH~Gg~~~f~~A~ 124 (254)
T 3dha_A 86 RIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTP 124 (254)
T ss_dssp SHHHHHHHHTCCGGGCSEEECSCCSHHHHTTGGGCSSSC
T ss_pred HHHHHHHHCCCCHHHCCEEEECCCCHHHCCCCCCCCCCC
T ss_conf 899999984999799969990799721027531135642
No 116
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*
Probab=22.52 E-value=34 Score=13.66 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=48.4
Q ss_pred CCHHHEEEEEECCCCEEEEEEEE--------ECCHHHHHHHHHHHHHHHHH--HCCCHHHHHHHH------CCCCCCCCH
Q ss_conf 68012789997798139999998--------42268999899999999976--099987866543------037854320
Q gi|254780429|r 9 TGADCSVAIYDSHAGRILGSYFK--------NLGRGHAEHLMPAIDYALKD--SRLEVSQVDRVV------TALGPGSFT 72 (206)
Q Consensus 9 s~~~~sval~~~~~~~~~~~~~~--------~~~r~hs~~L~~~i~~lL~~--~~~~~~~id~ia------v~~GPGSFT 72 (206)
..+..+|-+.-++...-+.+..- ..+.-+++.+.+.|++.+.- .|.++.+++.+. ...|+..-+
T Consensus 49 ~~e~v~V~~~l~dG~~g~Gecaav~~~G~ggrdpl~~a~~~~~~ie~~iaP~LiG~D~~~~~~l~~~ld~~~~~~~~~~~ 128 (413)
T 1kko_A 49 AGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHIKPLLEGRDVDAFLPNARFFDKLRIDGNLLHT 128 (413)
T ss_dssp EEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHHHHHHHHHHHTHHHHTTCBCSCSHHHHHHHHHCEETTEECCH
T ss_pred CCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 57079999997899889874035567777765502209999999985024364399820499999999865637914889
Q ss_pred HHHHHH--HHHHHHHHHCCCCCCC
Q ss_conf 246689--9999999732687110
Q gi|254780429|r 73 GVRVSI--AVARGISLVLKQPALG 94 (206)
Q Consensus 73 GlRigi--a~akgLa~~~~~pv~g 94 (206)
.+|.|+ |.....+...++|++-
T Consensus 129 Ai~~GVs~Al~Da~Ak~~~~pL~~ 152 (413)
T 1kko_A 129 AVRYGLSQALLDATALASGRLKTE 152 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 999989999999999984993999
No 117
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha JMP134}
Probab=22.51 E-value=19 Score=15.33 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=33.4
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 43037854320246689999999973268711038389999875214678659998508714
Q gi|254780429|r 62 VVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSLFHQ 123 (206)
Q Consensus 62 iav~~GPGSFTGlRigia~akgLa~~~~~pv~gvssle~la~~~~~~~~~~~i~~~idArr~ 123 (206)
+++++|=|| .+-+||.+++..++|++.|+|-- +- . ...++.++.|....
T Consensus 92 ~IiavGGGs------~iD~aK~ia~~~~~P~i~vPTta----sg--~-e~t~~~v~~~~~~k 140 (358)
T 3jzd_A 92 CAVAVGGGS------TTGLGKAIALETGMPIVAIPTTY----AG--S-EVTPVYGLTEAGTK 140 (358)
T ss_dssp EEEEEESHH------HHHHHHHHHHHHCCCEEEEECSS----CC--G-GGCSEEEEEETTEE
T ss_pred EEEEECCCC------CCCCCCCEEEECCCCEECCCCCC----CC--C-CCCCCCCCCCCCCC
T ss_conf 899968845------45654112540458641256525----86--2-24535312455540
No 118
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain DSM 12444, SGX, transferase, structural genomics; 2.50A {Novosphingobium aromaticivorans DSM12444}
Probab=22.41 E-value=34 Score=13.64 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=42.8
Q ss_pred EEEEECCCHHHEEEEEECCCCEEEEEEEEECCH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 788621680127899977981399999984226--------8999899999999976099987866543037
Q gi|254780429|r 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLGR--------GHAEHLMPAIDYALKDSRLEVSQVDRVVTAL 66 (206)
Q Consensus 3 iLaIdTs~~~~sval~~~~~~~~~~~~~~~~~r--------~hs~~L~~~i~~lL~~~~~~~~~id~iav~~ 66 (206)
+|+||--|..+-++|++.+ +++++........ ...+.+...+.+.+++.. .++|++|+++.
T Consensus 8 ~l~iD~GTts~Ka~l~d~~-g~~i~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~--~~~i~aI~~s~ 76 (482)
T 3h6e_A 8 TIVIDLGKTLSKVSLWDLD-GRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYA--DHPVTTIVPVG 76 (482)
T ss_dssp CEEEEECSSEEEEEEECTT-SCEEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTT--TSCCCEEEEEE
T ss_pred EEEEECCHHHHHHEEEECC-CCEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHH--HHCCCEEEEEC
T ss_conf 9999861221004068188-989999997886166999858899999999999999998--70797999938
No 119
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=22.40 E-value=16 Score=15.83 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=18.3
Q ss_pred HHHHHHHCCCHHHHHHHHCCCCCCCCH
Q ss_conf 999976099987866543037854320
Q gi|254780429|r 46 DYALKDSRLEVSQVDRVVTALGPGSFT 72 (206)
Q Consensus 46 ~~lL~~~~~~~~~id~iav~~GPGSFT 72 (206)
.|+.++-++--..-..+-++.+||+|+
T Consensus 11 ~EI~~kf~l~~~~~~vlDLg~aPGgw~ 37 (196)
T 2nyu_A 11 LEVNERHQILRPGLRVLDCGAAPGAWS 37 (196)
T ss_dssp HHHHHHHCCCCTTCEEEEETCCSCHHH
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHH
T ss_conf 999998286579987999657897389
No 120
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=21.49 E-value=17 Score=15.64 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=17.7
Q ss_pred HHHHHHCCCHHHHHHHHCCCCCCCCHH
Q ss_conf 999760999878665430378543202
Q gi|254780429|r 47 YALKDSRLEVSQVDRVVTALGPGSFTG 73 (206)
Q Consensus 47 ~lL~~~~~~~~~id~iav~~GPGSFTG 73 (206)
|+.++-++--..-..+-++.+||+||=
T Consensus 12 EI~~k~~l~~~~~~vlDLg~aPGgw~q 38 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQ 38 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHH
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCEE
T ss_conf 999984866789869997325896428
No 121
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=21.42 E-value=35 Score=13.51 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=56.2
Q ss_pred CEEEEECCCHHHEEEEEECCCCEEEEEEEE-ECCH-HHHHHHHHHHHHHHHHH---CCCHHHHHHHHCCCCCCCCHHH--
Q ss_conf 278862168012789997798139999998-4226-89998999999999760---9998786654303785432024--
Q gi|254780429|r 2 IVLALDTTGADCSVAIYDSHAGRILGSYFK-NLGR-GHAEHLMPAIDYALKDS---RLEVSQVDRVVTALGPGSFTGV-- 74 (206)
Q Consensus 2 ~iLaIdTs~~~~sval~~~~~~~~~~~~~~-~~~r-~hs~~L~~~i~~lL~~~---~~~~~~id~iav~~GPGSFTGl-- 74 (206)
-||+||--...+.+++++.+.+.++.++.. ..++ .-.+.+...+.++.++. .-...++..|.++ .||....=
T Consensus 13 ~viGiDiGGT~i~~~l~d~~~~~i~~~~~~~~t~~~~~~~~i~~~i~~~i~~l~~~~~~~~~~~gIGi~-~PG~vd~~~~ 91 (267)
T 1woq_A 13 PLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEAPAAGSPVGVT-FPGIIQHGVV 91 (267)
T ss_dssp CEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTCCCTTCCEEEE-ESSCEETTEE
T ss_pred CEEEEEECCCEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC-CCCCEEEEEE
T ss_conf 899999877659999998999989999999678999999999999999999987502677645213226-8870554005
Q ss_pred ---------HHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf ---------66899999999732687110383899998
Q gi|254780429|r 75 ---------RVSIAVARGISLVLKQPALGVGNLEVLAR 103 (206)
Q Consensus 75 ---------Rigia~akgLa~~~~~pv~gvssle~la~ 103 (206)
--++...+-|...+++|++=-+--.+.|.
T Consensus 92 ~~~~~~~~~~~~~~l~~~l~~~~~~pV~v~NDanaaAl 129 (267)
T 1woq_A 92 HSAANVDKSWLNTDIDALLTARLGRPVEVINDADAAGL 129 (267)
T ss_dssp CCCTTSCGGGTTCBHHHHHHHHHTSCEEEEEHHHHHHH
T ss_pred EECCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHH
T ss_conf 65157653435885789999987999898124213688
No 122
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes}
Probab=21.41 E-value=33 Score=13.71 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHH----HHCCCCCCCCHH
Q ss_conf 89998999999999760999878665----430378543202
Q gi|254780429|r 36 GHAEHLMPAIDYALKDSRLEVSQVDR----VVTALGPGSFTG 73 (206)
Q Consensus 36 ~hs~~L~~~i~~lL~~~~~~~~~id~----iav~~GPGSFTG 73 (206)
+.....+....+.++++|++.++++. +.++.+.|++..
T Consensus 73 ~~~~~~l~aa~~Al~dAGl~~~~~~~~r~Gv~~Gs~~g~~~~ 114 (413)
T 3o04_A 73 RFTHYAIASAEMAVQDSGLVIDDSNANRVGVWIGSGIGGMET 114 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCTTTGGGEEEEEECSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCH
T ss_conf 999999999999998509884436888779999967765320
No 123
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=21.21 E-value=36 Score=13.49 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=35.8
Q ss_pred HHHHHCCCCCCCCHHH-HHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHCCC-CCCEEEEEECCCCCEEEEEEEEEC
Q ss_conf 6654303785432024-668999999997326871103-83899998752146-786599985087141799999617
Q gi|254780429|r 59 VDRVVTALGPGSFTGV-RVSIAVARGISLVLKQPALGV-GNLEVLARAHLDSH-VGRPIMVLVSLFHQKVCCQKFSLD 133 (206)
Q Consensus 59 id~iav~~GPGSFTGl-Rigia~akgLa~~~~~pv~gv-ssle~la~~~~~~~-~~~~i~~~idArr~~~y~~~~~~~ 133 (206)
++.+++++ |-.||.- |-.+--| +...|.+.+.+ +--++-|..+.... .....+.++|.+.+.+=+..++.+
T Consensus 135 ~~~~Vitv-P~~~~~~qr~~l~~A---a~~AG~~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~Gggt~d~sv~~~~ 208 (383)
T 1dkg_D 135 VTEAVITV-PAYFNDAQRQATKDA---GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEID 208 (383)
T ss_dssp CCEEEECB-CTTCCHHHHHHHHHH---HHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEE
T ss_pred CCEEEEEE-CCCCCHHHHHHHHHH---HHHCCCCEEEEEEHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEEEEE
T ss_conf 98099999-989899999999999---998699847997429999998177779998099999978990999999998
No 124
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2
Probab=21.20 E-value=36 Score=13.48 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf 999899999999976099987866543037854
Q gi|254780429|r 37 HAEHLMPAIDYALKDSRLEVSQVDRVVTALGPG 69 (206)
Q Consensus 37 hs~~L~~~i~~lL~~~~~~~~~id~iav~~GPG 69 (206)
-++.-..+.+++|++++++++|||.++++.--+
T Consensus 60 ~~~ma~~Aa~~aL~~ag~~~~dId~li~~s~t~ 92 (339)
T 1mzj_A 60 IQVMGVAASRRALEHAGVDPAEIDLVVVSTMTN 92 (339)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCC
T ss_conf 999999999999987598966751899985158
No 125
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center, quorum quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=21.05 E-value=24 Score=14.61 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCC-------CCCCCHHHHH
Q ss_conf 99999976099987866543037-------8543202466
Q gi|254780429|r 44 AIDYALKDSRLEVSQVDRVVTAL-------GPGSFTGVRV 76 (206)
Q Consensus 44 ~i~~lL~~~~~~~~~id~iav~~-------GPGSFTGlRi 76 (206)
.+.+.|++.|++++||+.|.++= |-.-|..-++
T Consensus 89 ~l~~~L~~~G~~p~dI~~VilTH~H~DH~Ggl~~f~~a~i 128 (276)
T 2r2d_A 89 NLPERLRQLGLSPDDISTVVLSHLHNDHAGCVEYFGKSRL 128 (276)
T ss_dssp SHHHHHHHTTCCGGGCSEEECSCCSTTTSTTGGGCSSSEE
T ss_pred HHHHHHHHCCCCHHHCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 2999999839997999899847996042374135786300
No 126
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=20.72 E-value=37 Score=13.42 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-CCCCCC
Q ss_conf 2268999899999999976099987866543-037854
Q gi|254780429|r 33 LGRGHAEHLMPAIDYALKDSRLEVSQVDRVV-TALGPG 69 (206)
Q Consensus 33 ~~r~hs~~L~~~i~~lL~~~~~~~~~id~ia-v~~GPG 69 (206)
.-+.|.+..+..|++.|+++|.+++|+-.+- +-.++.
T Consensus 48 d~~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vy~~d~~ 85 (131)
T 1pf5_A 48 DFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPE 85 (131)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESSGG
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEEECCH
T ss_conf 99999999999999999871579758228999982608
No 127
>1zwv_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; subunit binding domain; NMR {Homo sapiens}
Probab=20.60 E-value=33 Score=13.69 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCCCC
Q ss_conf 99999999760999878665430378543
Q gi|254780429|r 42 MPAIDYALKDSRLEVSQVDRVVTALGPGS 70 (206)
Q Consensus 42 ~~~i~~lL~~~~~~~~~id~iav~~GPGS 70 (206)
.|.+.++.++.|+++++| .+.||+.
T Consensus 11 SP~aRklA~e~gIdl~~I----~GTG~~G 35 (58)
T 1zwv_A 11 TPAVRRLAMENNIKLSEV----VGSGKDG 35 (58)
T ss_dssp CHHHHHHHHHTTCCSSSS----SSCCSSS
T ss_pred CHHHHHHHHHCCCCHHHC----CCCCCCC
T ss_conf 999999999939988786----5769999
No 128
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme structure, ATP-binding, nucleotide-binding; HET: SAM; 1.70A {Yokose virus}
Probab=20.08 E-value=15 Score=15.86 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=20.9
Q ss_pred HHHHHHHCCCHHHHHHHHCCCCCCCCHHH
Q ss_conf 99997609998786654303785432024
Q gi|254780429|r 46 DYALKDSRLEVSQVDRVVTALGPGSFTGV 74 (206)
Q Consensus 46 ~~lL~~~~~~~~~id~iav~~GPGSFTGl 74 (206)
.++++.-.++++. +.+=++++||+||=.
T Consensus 80 ~~~~ekf~l~p~g-~VVDLGaapGGWSqv 107 (282)
T 3gcz_A 80 RWMEERGYVKPTG-IVVDLGCGRGGWSYY 107 (282)
T ss_dssp HHHHHTTSCCCCE-EEEEETCTTCHHHHH
T ss_pred HHHHHHCCCCCCC-EEEECCCCCCCHHHH
T ss_conf 9999846857588-388737789848999
Done!