HHSEARCH alignment of GI: 254780429 and SCOP domain: d1okja2

Alignment
>d1okja2 c.55.1.9 (A:107-216) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=98.43  E-value=5.5e-07  Score=62.70  Aligned_cols=87  Identities=17%  Similarity=0.217  Sum_probs=60.4

Q ss_pred             CEEEEEECCCCCEEEEEEEEEC--C--CCCCCCCCCCHHHHHHHHCC--CCEEEECCCHHHCCCCCCCC--------CCC
Q ss_conf             6599985087141799999617--8--31145110699999884227--77599827133142223677--------745
Q gi|254780429|r  112 RPIMVLVSLFHQKVCCQKFSLD--G--VSCSDPVLLNYEQTRSEVDN--FEGEIVGSGLSAIRGIENDI--------DHL  177 (206)
Q Consensus       112 ~~i~~~idArr~~~y~~~~~~~--g--~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~--------~~~  177 (206)
                      ..|+++|||||+|||++.|+.+  |  ..+.++.+++.+++...+..  .+..++|+|+..+.......        ...
T Consensus         2 ~rV~~~iDAR~~EVY~a~Y~~~~~g~~~~~~~~~v~~~~~l~~~l~~~~~~~~~vG~g~~~~~~~~~~~~~~~~~~~~~~   81 (110)
T d1okja2           2 TRVLAAIDARMGEVYWAEYQRDENGIWHGEETEAVLKPEIVHERMQQLSGEWVTVGTGWQAWPDLGKESGLVLRDGEVLL   81 (110)
T ss_dssp             SEEEEEEECSSSCEEEEEEEECTTSCEECGGGCEEECHHHHHHHHTTCCSEEEEESHHHHHCTTSSTTCSSEEEECSCSS
T ss_pred             CEEEEHHHHCCCCCEEEEEECCCCCCEEECCCCEEECHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             76876678385771887746179997886467767889998899860698889982379999999863445635530027


Q ss_pred             -CHHHHHH-------CCCCCCCCCCCCCE
Q ss_conf             -7788986-------38835746487400
Q gi|254780429|r  178 -PMDVLSR-------LGITKSSPFPSPIY  198 (206)
Q Consensus       178 -~~~~~a~-------~~~~~~~~~~~PlY  198 (206)
                       ....+++       .|...++..++|+|
T Consensus        82 P~A~~l~~LA~~~~~~g~~~~~~~~~P~Y  110 (110)
T d1okja2          82 PAAEDMLPIACQMFAEGKTVAVEHAEPVY  110 (110)
T ss_dssp             CCGGGHHHHHHHHHHHTCCBCGGGCCCCC
T ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHCCCCC
T ss_conf             69999999999999908987899971069


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein YeaZ
species: Escherichia coli [TaxId: 562]