RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780429|ref|YP_003064842.1| hypothetical protein
CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62]
(206 letters)
>2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF,
actin-like-fold, glycoprotease, chaperone; 2.05A
{Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A
Length = 231
Score = 99.2 bits (246), Expect = 6e-22
Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 25/224 (11%)
Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60
M +LA+DT CSVA++++ G I ++F+ R H + ++P + L S ++++D
Sbjct: 1 MRILAIDTATEACSVALWNN--GTIN-AHFELCPREHTQRILPMVQEILAASGASLNEID 57
Query: 61 RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL 120
+ GPGSFTGVR+ I +A+G++L P +GV L +A+ ++ +
Sbjct: 58 ALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQGAWRKTGATRVLAAIDA 117
Query: 121 FHQKVCCQKFSLDGVSC----SDPVLLNYEQTRSEVDNFEGE--IVGSGLSAIRGIENDI 174
+V ++ D +L E+ + GE VG+G SA + +
Sbjct: 118 RMGEVYWAEYQRDAQGVWQGEETEAVLKPERVGERLKQLSGEWATVGTGWSAWPDLAKEC 177
Query: 175 D--------HLP----MDVLSRLGITKSSPFP----SPIYLRSP 202
LP M ++ + P+YLR+
Sbjct: 178 GLTLHDGEVSLPAAEDMLPIASQKLAAGETVAVEHAEPVYLRNE 221
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural
genomics, joint center for structural genomics, JCSG;
2.50A {Thermotoga maritima MSB8} SCOP: c.55.1.9 c.55.1.9
Length = 218
Score = 94.1 bits (233), Expect = 2e-20
Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 16/206 (7%)
Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60
M VLALDT+ + + G L + HAE L + L + L+V +D
Sbjct: 13 MNVLALDTSQR-IRIGLRK---GEDLFEISYTGEKKHAEILPVVVKKLLDELDLKVKDLD 68
Query: 61 RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL 120
V +GPG TG+RV IA G+ P + + E+ A++ ++V
Sbjct: 69 VVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKSCPADG---VVLVARRA 125
Query: 121 FHQKVCCQKFSLDG--VSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLP 178
C + D +P +++ E+ F +IV + L
Sbjct: 126 RKGYHYCAVYLKDKGLNPLKEPSVVSDEELEEITKEFSPKIVLKD-----DLLISPAVLV 180
Query: 179 --MDVLSRLGITKSSPFPSPIYLRSP 202
+ L R T P+YL+
Sbjct: 181 EESERLFREKKTIHYYEIEPLYLQKS 206
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn
dependent nucleotide phosphatase, metalloprotease,
hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus
abyssi} PDB: 2ivo_A 2ivp_A*
Length = 330
Score = 69.9 bits (170), Expect = 4e-13
Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 17/156 (10%)
Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNL------------GRGHAEHLMPAIDYA 48
M+ L ++ T + I ++L + F L HA + P + A
Sbjct: 1 MLALGIEGTAHTLGIGIVSE--DKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKA 58
Query: 49 LKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDS 108
L ++ + + +D + + GPG +RV AR +++ ++P +GV +
Sbjct: 59 LSEAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITKMF 118
Query: 109 HVGRPIMVLVSLFHQKVC---CQKFSLDGVSCSDPV 141
V P+ + VS + +V ++ + G + +
Sbjct: 119 GVKDPVGLYVSGGNTQVLALEGGRYRVFGETLDIGI 154
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 66.5 bits (162), Expect = 4e-12
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 16/142 (11%)
Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGS----YFKNLG--------RGHAEHLMPAIDYA 48
MI L L+ T V I S G +L + Y HAE I A
Sbjct: 6 MICLGLEGTAEKTGVGIVTSD-GEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEA 64
Query: 49 LKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAH-LD 107
+ +++D + + GPG +RV+ VAR +SL LK+P +GV + L
Sbjct: 65 FEVVDK--NEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLT 122
Query: 108 SHVGRPIMVLVSLFHQKVCCQK 129
+ P+ + VS + +V
Sbjct: 123 TEAEDPLTLYVSGGNTQVIAYV 144
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase,
metal-binding, metalloprotease, protease, zinc, keops
complex, ATPase, metal ION binding; 3.02A {Thermoplasma
acidophilum}
Length = 334
Score = 61.1 bits (147), Expect = 2e-10
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNL------------GRGHAEHLMPAIDYA 48
MIVL L+ T S I D RIL H+E + I A
Sbjct: 6 MIVLGLEGTAHTISCGIIDE--SRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRA 63
Query: 49 LKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEV-LARAHLD 107
L+ +++ + +D + ++GPG +RV+ AR IS++ +P +GV + +
Sbjct: 64 LEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEIGRRV 123
Query: 108 SHVGRPIMVLVSLFHQKVCCQK 129
+ P+M+ VS + +V
Sbjct: 124 TGAIDPVMLYVSGGNTQVIAHV 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 42.2 bits (99), Expect = 8e-05
Identities = 48/228 (21%), Positives = 74/228 (32%), Gaps = 93/228 (40%)
Query: 22 AGRILG-------SYFKNLG-RGHAEHLMPAIDYALKDSR---LEVSQVDRVVTALGPGS 70
++LG SY K G GH++ L+ A+ A DS + + +T L
Sbjct: 252 TAKLLGFTPGELRSYLK--GATGHSQGLVTAVAIAETDSWESFFVSVR--KAITVL---F 304
Query: 71 FTGVRVSIAVARGISL---VLKQ----------PALGVGNLEVLARAHLDSHVGR----- 112
F GVR A SL +L+ P L + NL + + +V +
Sbjct: 305 FIGVRCYEAYPN-TSLPPSILEDSLENNEGVPSPMLSISNLT---QEQVQDYVNKTNSHL 360
Query: 113 PIMVLVSLFHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVG----S--GL-S 165
P ++V +S L+N N +V S GL
Sbjct: 361 PA-------GKQVE--------IS-----LVN---GA---KNL---VVSGPPQSLYGLNL 391
Query: 166 AIRGIEN----DIDHLPMDVLSR--------LGITKSSPFPSPIYLRS 201
+R + D +P R L + +SPF S L
Sbjct: 392 TLRKAKAPSGLDQSRIPFS--ERKLKFSNRFLPV--ASPFHSH-LLVP 434
Score = 36.5 bits (84), Expect = 0.004
Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 45/97 (46%)
Query: 10 GADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQV--DRV----V 63
D + +YD+ G +L R + + I V + V
Sbjct: 452 AKDIQIPVYDTFDGS-------DL-RVLSGSISERI----------VDCIIRLPVKWETT 493
Query: 64 TAL--------GPGSF-------------TGVRVSIA 79
T GPG TGVRV +A
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 38.6 bits (89), Expect = 0.001
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 34/106 (32%)
Query: 113 PI--MVLVSLFHQKVCCQKFSLDGVSCSDPVLLNYEQTR----SEVDNFEGEIVGSGLSA 166
PI VLVS+ + F G++ DP YE + SEV N G +G G+SA
Sbjct: 1011 PITLFVLVSV------VEAFIASGIT--DP----YEMYKYVHVSEVGNCSGSGMG-GVSA 1057
Query: 167 IRG----------IENDI-DHLPMDVLS----RLGITKSSPFPSPI 197
+RG ++NDI ++ +S L I+ S P +P+
Sbjct: 1058 LRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPV 1103
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
neurolysin, ACE, hydrolase; HET: TRP; 2.00A
{Escherichia coli}
Length = 680
Score = 28.6 bits (63), Expect = 1.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 38 AEHLMPAIDYALKDSRLEVSQV 59
H PA D ++ R E++ +
Sbjct: 24 NHHYRPAFDEGMQQKRAEIAAI 45
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), structural genomics, joint center for
structural genomics; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 28.4 bits (62), Expect = 1.1
Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 41 LMPAIDYALKDSRLEVSQVDRVV----TALGPGSFTGVRVSIAVARGISLVLKQPALGVG 96
L PA+D + +V+++ R+ T + PG G+ VSIA+++ LGV
Sbjct: 19 LNPALDREIFIEDFQVNRLYRINDLSKTQMSPGG-KGINVSIALSK----------LGV- 66
Query: 97 NLEVLARAHLDSHVGRPIMVLVSLFHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFE 156
+A + ++G+ ++ + + + ++G + + +++ + NF
Sbjct: 67 --PSVATGFVGGYMGKILVEELRKISKLITTNFVYVEGETRENIEIIDEKNKTITAINFP 124
Query: 157 G 157
G
Sbjct: 125 G 125
>3nfw_A Nitrilotriacetate monooxygenase component B; seattle structural
genomics center for infectious disease, S mycobacterium;
1.60A {Mycobacterium thermoresistibile}
Length = 210
Score = 28.5 bits (63), Expect = 1.2
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 62 VVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSLF 121
++T + G+ G A +SL P L + ++R+ V +
Sbjct: 46 IITTVHEGNPVGFACQSFAA--LSL---DPPLVLFCPTKVSRSWKAIEASGRFCVNILHE 100
Query: 122 HQKVCCQKFSLDG 134
Q+ +F
Sbjct: 101 KQQHVSARFGSRE 113
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 27.7 bits (61), Expect = 2.2
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 91 PALGVGNLEVLARAHLDS 108
LG G L LA +DS
Sbjct: 159 AGLGNGGLGRLAACFVDS 176
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 27.4 bits (61), Expect = 2.3
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 30 FKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVV 63
++L + + AL+D+ L VS +D V+
Sbjct: 305 LESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVI 338
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 27.2 bits (60), Expect = 2.7
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 30 FKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVV----TALGPG------SFTGVRVSI- 78
++L + + AL+D+ L VS +D V+ P F G
Sbjct: 305 LESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKD 364
Query: 79 -----AVARG 83
AVA G
Sbjct: 365 VNPDEAVAIG 374
>2c9k_A Pesticidal crystal protein CRY4AA; toxin, insect toxin,
bioinsecticicide, pore formation, receptor recognition,
sporulation; 2.8A {Bacillus thuringiensis}
Length = 612
Score = 27.0 bits (59), Expect = 2.9
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 140 PVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLP--MDVLSRLGI-TKSSPFPSP 196
P+ + E TR E + E+ + P L L K+ P+
Sbjct: 252 PIGVQSELTREIYQVLNFEESPYKYYDFQYQEDSLTRRPHLFTWLDSLNFYEKAQTTPNN 311
Query: 197 IY 198
+
Sbjct: 312 FF 313
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 2pyi_A* 2pyd_A* 2qnb_A* 1c8l_A* 1axr_A*
1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A*
1xl0_A* 1xl1_A* 1z62_A* 2amv_A* 2f3p_A* 2f3q_A* ...
Length = 824
Score = 26.9 bits (59), Expect = 3.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 91 PALGVGNLEVLARAHLDS 108
LG G L LA LDS
Sbjct: 118 AGLGNGGLGRLAACFLDS 135
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 26.6 bits (58), Expect = 4.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 91 PALGVGNLEVLARAHLDS 108
ALG G L LA LDS
Sbjct: 109 AALGNGGLGRLAACFLDS 126
>3js6_A Uncharacterized PARM protein; partition, segregation, filament;
1.95A {Staphylococcus aureus}
Length = 355
Score = 26.4 bits (57), Expect = 4.5
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 16/69 (23%)
Query: 30 FKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGS---------FTGVRVSI-- 78
FK+ + L+ + + + ++ +DR++ G G+ +
Sbjct: 262 FKDEFYKEQDSLIEEVMSNFEITVGNINSIDRIIVT-GGGANIHFDSLSHYYSDVFEKAD 320
Query: 79 ----AVARG 83
+ RG
Sbjct: 321 DSQFSNVRG 329
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide- binding,
phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo
sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A*
1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A*
3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A*
1nga_A* ...
Length = 404
Score = 26.5 bits (58), Expect = 4.7
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 17/71 (23%)
Query: 30 FKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVV----TALGPG-------SFTGVRVSI 78
F+ L + ++ AL+D++L+ Q+ +V + P F G ++
Sbjct: 323 FEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNK 382
Query: 79 ------AVARG 83
AVA G
Sbjct: 383 SINPDEAVAYG 393
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 26.4 bits (58), Expect = 4.8
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 23 GRILGSYFKNLGRGHAEHLM-PAIDYALKDSRLEVSQVDRVV--TALGPGS 70
+ FK+ + + L+ P + ++ + L S+V +V T L PGS
Sbjct: 43 CKSKRGNFKDT---YPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGS 90
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
transferase; HET: GLC PLP; 1.80A {Escherichia coli}
SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A*
2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 26.1 bits (57), Expect = 5.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 91 PALGVGNLEVLARAHLDS 108
PALG G L LA LDS
Sbjct: 108 PALGNGGLGRLAACFLDS 125
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate
mutase family member 5, BXLBV68, MGC protein, structural
genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo
sapiens}
Length = 202
Score = 25.7 bits (56), Expect = 7.5
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 158 EIVGSGLSAIRGIENDIDHLPMDVLSR 184
I +G A+R + D +P D ++R
Sbjct: 176 VIRPNGRVALRTL-GDTGFMPPDKITR 201
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 25.5 bits (56), Expect = 8.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 30 FKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVV 63
F+ L E M + AL+D+ L + +D+V+
Sbjct: 274 FEELSAHLVERTMGPVRQALQDAGLTPADIDKVI 307
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.139 0.408
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,715,560
Number of extensions: 75858
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 27
Length of query: 206
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 118
Effective length of database: 3,559,758
Effective search space: 420051444
Effective search space used: 420051444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)