RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780429|ref|YP_003064842.1| hypothetical protein CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62] (206 letters) >2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A Length = 231 Score = 99.2 bits (246), Expect = 6e-22 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 25/224 (11%) Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60 M +LA+DT CSVA++++ G I ++F+ R H + ++P + L S ++++D Sbjct: 1 MRILAIDTATEACSVALWNN--GTIN-AHFELCPREHTQRILPMVQEILAASGASLNEID 57 Query: 61 RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL 120 + GPGSFTGVR+ I +A+G++L P +GV L +A+ ++ + Sbjct: 58 ALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQGAWRKTGATRVLAAIDA 117 Query: 121 FHQKVCCQKFSLDGVSC----SDPVLLNYEQTRSEVDNFEGE--IVGSGLSAIRGIENDI 174 +V ++ D +L E+ + GE VG+G SA + + Sbjct: 118 RMGEVYWAEYQRDAQGVWQGEETEAVLKPERVGERLKQLSGEWATVGTGWSAWPDLAKEC 177 Query: 175 D--------HLP----MDVLSRLGITKSSPFP----SPIYLRSP 202 LP M ++ + P+YLR+ Sbjct: 178 GLTLHDGEVSLPAAEDMLPIASQKLAAGETVAVEHAEPVYLRNE 221 >2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} SCOP: c.55.1.9 c.55.1.9 Length = 218 Score = 94.1 bits (233), Expect = 2e-20 Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 16/206 (7%) Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60 M VLALDT+ + + G L + HAE L + L + L+V +D Sbjct: 13 MNVLALDTSQR-IRIGLRK---GEDLFEISYTGEKKHAEILPVVVKKLLDELDLKVKDLD 68 Query: 61 RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL 120 V +GPG TG+RV IA G+ P + + E+ A++ ++V Sbjct: 69 VVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKSCPADG---VVLVARRA 125 Query: 121 FHQKVCCQKFSLDG--VSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLP 178 C + D +P +++ E+ F +IV + L Sbjct: 126 RKGYHYCAVYLKDKGLNPLKEPSVVSDEELEEITKEFSPKIVLKD-----DLLISPAVLV 180 Query: 179 --MDVLSRLGITKSSPFPSPIYLRSP 202 + L R T P+YL+ Sbjct: 181 EESERLFREKKTIHYYEIEPLYLQKS 206 >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Length = 330 Score = 69.9 bits (170), Expect = 4e-13 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 17/156 (10%) Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNL------------GRGHAEHLMPAIDYA 48 M+ L ++ T + I ++L + F L HA + P + A Sbjct: 1 MLALGIEGTAHTLGIGIVSE--DKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKA 58 Query: 49 LKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDS 108 L ++ + + +D + + GPG +RV AR +++ ++P +GV + Sbjct: 59 LSEAGVSLDDIDVIAFSQGPGLGPALRVVATAARALAVKYRKPIVGVNHCIAHVEITKMF 118 Query: 109 HVGRPIMVLVSLFHQKVC---CQKFSLDGVSCSDPV 141 V P+ + VS + +V ++ + G + + Sbjct: 119 GVKDPVGLYVSGGNTQVLALEGGRYRVFGETLDIGI 154 >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* Length = 540 Score = 66.5 bits (162), Expect = 4e-12 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 16/142 (11%) Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGS----YFKNLG--------RGHAEHLMPAIDYA 48 MI L L+ T V I S G +L + Y HAE I A Sbjct: 6 MICLGLEGTAEKTGVGIVTSD-GEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEA 64 Query: 49 LKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAH-LD 107 + +++D + + GPG +RV+ VAR +SL LK+P +GV + L Sbjct: 65 FEVVDK--NEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGVNHCIAHIEIGKLT 122 Query: 108 SHVGRPIMVLVSLFHQKVCCQK 129 + P+ + VS + +V Sbjct: 123 TEAEDPLTLYVSGGNTQVIAYV 144 >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} Length = 334 Score = 61.1 bits (147), Expect = 2e-10 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 15/142 (10%) Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNL------------GRGHAEHLMPAIDYA 48 MIVL L+ T S I D RIL H+E + I A Sbjct: 6 MIVLGLEGTAHTISCGIIDE--SRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRA 63 Query: 49 LKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEV-LARAHLD 107 L+ +++ + +D + ++GPG +RV+ AR IS++ +P +GV + + Sbjct: 64 LEKAKISIHDIDLIGFSMGPGLAPSLRVTATAARTISVLTGKPIIGVNHPLGHIEIGRRV 123 Query: 108 SHVGRPIMVLVSLFHQKVCCQK 129 + P+M+ VS + +V Sbjct: 124 TGAIDPVMLYVSGGNTQVIAHV 145 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 42.2 bits (99), Expect = 8e-05 Identities = 48/228 (21%), Positives = 74/228 (32%), Gaps = 93/228 (40%) Query: 22 AGRILG-------SYFKNLG-RGHAEHLMPAIDYALKDSR---LEVSQVDRVVTALGPGS 70 ++LG SY K G GH++ L+ A+ A DS + + +T L Sbjct: 252 TAKLLGFTPGELRSYLK--GATGHSQGLVTAVAIAETDSWESFFVSVR--KAITVL---F 304 Query: 71 FTGVRVSIAVARGISL---VLKQ----------PALGVGNLEVLARAHLDSHVGR----- 112 F GVR A SL +L+ P L + NL + + +V + Sbjct: 305 FIGVRCYEAYPN-TSLPPSILEDSLENNEGVPSPMLSISNLT---QEQVQDYVNKTNSHL 360 Query: 113 PIMVLVSLFHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVG----S--GL-S 165 P ++V +S L+N N +V S GL Sbjct: 361 PA-------GKQVE--------IS-----LVN---GA---KNL---VVSGPPQSLYGLNL 391 Query: 166 AIRGIEN----DIDHLPMDVLSR--------LGITKSSPFPSPIYLRS 201 +R + D +P R L + +SPF S L Sbjct: 392 TLRKAKAPSGLDQSRIPFS--ERKLKFSNRFLPV--ASPFHSH-LLVP 434 Score = 36.5 bits (84), Expect = 0.004 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 45/97 (46%) Query: 10 GADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQV--DRV----V 63 D + +YD+ G +L R + + I V + V Sbjct: 452 AKDIQIPVYDTFDGS-------DL-RVLSGSISERI----------VDCIIRLPVKWETT 493 Query: 64 TAL--------GPGSF-------------TGVRVSIA 79 T GPG TGVRV +A Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 38.6 bits (89), Expect = 0.001 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 34/106 (32%) Query: 113 PI--MVLVSLFHQKVCCQKFSLDGVSCSDPVLLNYEQTR----SEVDNFEGEIVGSGLSA 166 PI VLVS+ + F G++ DP YE + SEV N G +G G+SA Sbjct: 1011 PITLFVLVSV------VEAFIASGIT--DP----YEMYKYVHVSEVGNCSGSGMG-GVSA 1057 Query: 167 IRG----------IENDI-DHLPMDVLS----RLGITKSSPFPSPI 197 +RG ++NDI ++ +S L I+ S P +P+ Sbjct: 1058 LRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPV 1103 >1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase, neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia coli} Length = 680 Score = 28.6 bits (63), Expect = 1.0 Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 38 AEHLMPAIDYALKDSRLEVSQV 59 H PA D ++ R E++ + Sbjct: 24 NHHYRPAFDEGMQQKRAEIAAI 45 >2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), structural genomics, joint center for structural genomics; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Length = 331 Score = 28.4 bits (62), Expect = 1.1 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 18/121 (14%) Query: 41 LMPAIDYALKDSRLEVSQVDRVV----TALGPGSFTGVRVSIAVARGISLVLKQPALGVG 96 L PA+D + +V+++ R+ T + PG G+ VSIA+++ LGV Sbjct: 19 LNPALDREIFIEDFQVNRLYRINDLSKTQMSPGG-KGINVSIALSK----------LGV- 66 Query: 97 NLEVLARAHLDSHVGRPIMVLVSLFHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFE 156 +A + ++G+ ++ + + + ++G + + +++ + NF Sbjct: 67 --PSVATGFVGGYMGKILVEELRKISKLITTNFVYVEGETRENIEIIDEKNKTITAINFP 124 Query: 157 G 157 G Sbjct: 125 G 125 >3nfw_A Nitrilotriacetate monooxygenase component B; seattle structural genomics center for infectious disease, S mycobacterium; 1.60A {Mycobacterium thermoresistibile} Length = 210 Score = 28.5 bits (63), Expect = 1.2 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 5/73 (6%) Query: 62 VVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSLF 121 ++T + G+ G A +SL P L + ++R+ V + Sbjct: 46 IITTVHEGNPVGFACQSFAA--LSL---DPPLVLFCPTKVSRSWKAIEASGRFCVNILHE 100 Query: 122 HQKVCCQKFSLDG 134 Q+ +F Sbjct: 101 KQQHVSARFGSRE 113 >1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4 Length = 879 Score = 27.7 bits (61), Expect = 2.2 Identities = 8/18 (44%), Positives = 9/18 (50%) Query: 91 PALGVGNLEVLARAHLDS 108 LG G L LA +DS Sbjct: 159 AGLGNGGLGRLAACFVDS 176 >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 Score = 27.4 bits (61), Expect = 2.3 Identities = 9/34 (26%), Positives = 17/34 (50%) Query: 30 FKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVV 63 ++L + + AL+D+ L VS +D V+ Sbjct: 305 LESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVI 338 >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 Score = 27.2 bits (60), Expect = 2.7 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 16/70 (22%) Query: 30 FKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVV----TALGPG------SFTGVRVSI- 78 ++L + + AL+D+ L VS +D V+ P F G Sbjct: 305 LESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKD 364 Query: 79 -----AVARG 83 AVA G Sbjct: 365 VNPDEAVAIG 374 >2c9k_A Pesticidal crystal protein CRY4AA; toxin, insect toxin, bioinsecticicide, pore formation, receptor recognition, sporulation; 2.8A {Bacillus thuringiensis} Length = 612 Score = 27.0 bits (59), Expect = 2.9 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%) Query: 140 PVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLP--MDVLSRLGI-TKSSPFPSP 196 P+ + E TR E + E+ + P L L K+ P+ Sbjct: 252 PIGVQSELTREIYQVLNFEESPYKYYDFQYQEDSLTRRPHLFTWLDSLNFYEKAQTTPNN 311 Query: 197 IY 198 + Sbjct: 312 FF 313 >2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 2pyi_A* 2pyd_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* 1xl0_A* 1xl1_A* 1z62_A* 2amv_A* 2f3p_A* 2f3q_A* ... Length = 824 Score = 26.9 bits (59), Expect = 3.6 Identities = 9/18 (50%), Positives = 9/18 (50%) Query: 91 PALGVGNLEVLARAHLDS 108 LG G L LA LDS Sbjct: 118 AGLGNGGLGRLAACFLDS 135 >2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Length = 796 Score = 26.6 bits (58), Expect = 4.5 Identities = 10/18 (55%), Positives = 10/18 (55%) Query: 91 PALGVGNLEVLARAHLDS 108 ALG G L LA LDS Sbjct: 109 AALGNGGLGRLAACFLDS 126 >3js6_A Uncharacterized PARM protein; partition, segregation, filament; 1.95A {Staphylococcus aureus} Length = 355 Score = 26.4 bits (57), Expect = 4.5 Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 16/69 (23%) Query: 30 FKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGS---------FTGVRVSI-- 78 FK+ + L+ + + + ++ +DR++ G G+ + Sbjct: 262 FKDEFYKEQDSLIEEVMSNFEITVGNINSIDRIIVT-GGGANIHFDSLSHYYSDVFEKAD 320 Query: 79 ----AVARG 83 + RG Sbjct: 321 DSQFSNVRG 329 >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... Length = 404 Score = 26.5 bits (58), Expect = 4.7 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 17/71 (23%) Query: 30 FKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVV----TALGPG-------SFTGVRVSI 78 F+ L + ++ AL+D++L+ Q+ +V + P F G ++ Sbjct: 323 FEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNK 382 Query: 79 ------AVARG 83 AVA G Sbjct: 383 SINPDEAVAYG 393 >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A Length = 442 Score = 26.4 bits (58), Expect = 4.8 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%) Query: 23 GRILGSYFKNLGRGHAEHLM-PAIDYALKDSRLEVSQVDRVV--TALGPGS 70 + FK+ + + L+ P + ++ + L S+V +V T L PGS Sbjct: 43 CKSKRGNFKDT---YPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGS 90 >1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, transferase; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Length = 796 Score = 26.1 bits (57), Expect = 5.7 Identities = 11/18 (61%), Positives = 11/18 (61%) Query: 91 PALGVGNLEVLARAHLDS 108 PALG G L LA LDS Sbjct: 108 PALGNGGLGRLAACFLDS 125 >3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} Length = 202 Score = 25.7 bits (56), Expect = 7.5 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%) Query: 158 EIVGSGLSAIRGIENDIDHLPMDVLSR 184 I +G A+R + D +P D ++R Sbjct: 176 VIRPNGRVALRTL-GDTGFMPPDKITR 201 >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 Score = 25.5 bits (56), Expect = 8.3 Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 30 FKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRVV 63 F+ L E M + AL+D+ L + +D+V+ Sbjct: 274 FEELSAHLVERTMGPVRQALQDAGLTPADIDKVI 307 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.139 0.408 Gapped Lambda K H 0.267 0.0516 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,715,560 Number of extensions: 75858 Number of successful extensions: 225 Number of sequences better than 10.0: 1 Number of HSP's gapped: 217 Number of HSP's successfully gapped: 27 Length of query: 206 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 118 Effective length of database: 3,559,758 Effective search space: 420051444 Effective search space used: 420051444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.1 bits)