RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780429|ref|YP_003064842.1| hypothetical protein CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62] (206 letters) >d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]} Length = 103 Score = 92.6 bits (230), Expect = 2e-20 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60 M VLALDT+ + + G L + HAE L + L + L+V +D Sbjct: 1 MNVLALDTSQR-IRIGLRK---GEDLFEISYTGEKKHAEILPVVVKKLLDELDLKVKDLD 56 Query: 61 RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARA 104 V +GPG TG+RV IA G+ P + + E+ A++ Sbjct: 57 VVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKS 100 >d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]} Length = 106 Score = 74.2 bits (182), Expect = 8e-15 Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 3/107 (2%) Query: 3 VLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVDRV 62 +LA+DT CSVA+++ G + ++F+ R H + ++P + L S ++ ++ + Sbjct: 2 ILAIDTATEACSVALWND--GTVN-AHFELCPREHTQRILPMVQDILTTSGTSLTDINAL 58 Query: 63 VTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSH 109 GPGSFTGVR+ I +A+G++L + P +GV L +A+ + Sbjct: 59 AYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKN 105 >d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 876 Score = 27.7 bits (61), Expect = 0.77 Identities = 8/18 (44%), Positives = 9/18 (50%) Query: 91 PALGVGNLEVLARAHLDS 108 LG G L LA +DS Sbjct: 156 AGLGNGGLGRLAACFVDS 173 >d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 824 Score = 26.9 bits (59), Expect = 1.4 Identities = 9/18 (50%), Positives = 9/18 (50%) Query: 91 PALGVGNLEVLARAHLDS 108 LG G L LA LDS Sbjct: 118 AGLGNGGLGRLAACFLDS 135 >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Length = 391 Score = 26.5 bits (57), Expect = 1.8 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 8/41 (19%) Query: 161 GSGLSAIRGIENDIDHLPMDVLSRLGITK---SSPFPSPIY 198 G+ RG++N + + L LGI F S + Sbjct: 16 LDGVGDFRGLKNAVSY-----LKELGIDFVWLMPVFSSISF 51 >d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Length = 796 Score = 26.2 bits (57), Expect = 2.1 Identities = 11/18 (61%), Positives = 11/18 (61%) Query: 91 PALGVGNLEVLARAHLDS 108 PALG G L LA LDS Sbjct: 108 PALGNGGLGRLAACFLDS 125 >d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Length = 319 Score = 25.7 bits (55), Expect = 2.7 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 16/120 (13%) Query: 41 LMPAIDYALKDSRLEVSQVDRVVTALGPGSFTG---VRVSIAVARGISLVLKQPALGVGN 97 L PA+D + +V+++ R+ G + VSIA+++ LGV Sbjct: 7 LNPALDREIFIEDFQVNRLYRINDLSKTQMSPGGKGINVSIALSK----------LGV-- 54 Query: 98 LEVLARAHLDSHVGRPIMVLVSLFHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEG 157 +A + ++G+ ++ + + + ++G + + +++ + NF G Sbjct: 55 -PSVATGFVGGYMGKILVEELRKISKLITTNFVYVEGETRENIEIIDEKNKTITAINFPG 113 >d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]} Length = 654 Score = 25.9 bits (56), Expect = 3.0 Identities = 3/22 (13%), Positives = 9/22 (40%) Query: 38 AEHLMPAIDYALKDSRLEVSQV 59 A+ + ++ ++ QV Sbjct: 7 AQQIEERTRELIEQTKRVYDQV 28 >d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 665 Score = 25.5 bits (55), Expect = 3.1 Identities = 2/22 (9%), Positives = 7/22 (31%) Query: 38 AEHLMPAIDYALKDSRLEVSQV 59 E + + + ++ V Sbjct: 18 PEQIKTRTEQLIAQTKQVYDTV 39 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.139 0.408 Gapped Lambda K H 0.267 0.0547 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 736,687 Number of extensions: 32540 Number of successful extensions: 73 Number of sequences better than 10.0: 1 Number of HSP's gapped: 71 Number of HSP's successfully gapped: 9 Length of query: 206 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 125 Effective length of database: 1,295,466 Effective search space: 161933250 Effective search space used: 161933250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.8 bits)