BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780429|ref|YP_003064842.1| hypothetical protein CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62] (206 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780429|ref|YP_003064842.1| hypothetical protein CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62] Length = 206 Score = 416 bits (1070), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/206 (100%), Positives = 206/206 (100%) Query: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD Sbjct: 1 MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60 Query: 61 RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL 120 RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL Sbjct: 61 RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL 120 Query: 121 FHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLPMD 180 FHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLPMD Sbjct: 121 FHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLPMD 180 Query: 181 VLSRLGITKSSPFPSPIYLRSPCFLV 206 VLSRLGITKSSPFPSPIYLRSPCFLV Sbjct: 181 VLSRLGITKSSPFPSPIYLRSPCFLV 206 >gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 37.7 bits (86), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 34 GRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPAL 93 R H + L I L + +++S +D + GPG G+ V + A+ IS V +P Sbjct: 56 ARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFY 115 Query: 94 GVGNLE-VLARAHLDSHVGRPIMVLV 118 + +LE + A L + P +VL+ Sbjct: 116 AINHLEGHILTARLTDDIAFPYLVLL 141 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 23.1 bits (48), Expect = 4.0, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%) Query: 137 CSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDID 175 C +LL+Y++ R +D + + + G EN ID Sbjct: 911 CMSNILLSYDENRQTLDKKLSDHIDVLRQNLAGSENKID 949 >gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 21.9 bits (45), Expect = 9.3, Method: Compositional matrix adjust. Identities = 9/31 (29%), Positives = 18/31 (58%) Query: 154 NFEGEIVGSGLSAIRGIENDIDHLPMDVLSR 184 +FE +++ L I G+ D+ + P+D L + Sbjct: 127 SFEVDLLQKSLDKIEGVIVDVPYNPIDSLWK 157 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.139 0.408 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 129,490 Number of Sequences: 1233 Number of extensions: 5280 Number of successful extensions: 13 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 4 length of query: 206 length of database: 328,796 effective HSP length: 70 effective length of query: 136 effective length of database: 242,486 effective search space: 32978096 effective search space used: 32978096 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 36 (18.5 bits)