BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780429|ref|YP_003064842.1| hypothetical protein
CLIBASIA_01570 [Candidatus Liberibacter asiaticus str. psy62]
         (206 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780429|ref|YP_003064842.1| hypothetical protein CLIBASIA_01570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 206

 Score =  416 bits (1070), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60
           MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD
Sbjct: 1   MIVLALDTTGADCSVAIYDSHAGRILGSYFKNLGRGHAEHLMPAIDYALKDSRLEVSQVD 60

Query: 61  RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL 120
           RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL
Sbjct: 61  RVVTALGPGSFTGVRVSIAVARGISLVLKQPALGVGNLEVLARAHLDSHVGRPIMVLVSL 120

Query: 121 FHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLPMD 180
           FHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLPMD
Sbjct: 121 FHQKVCCQKFSLDGVSCSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDIDHLPMD 180

Query: 181 VLSRLGITKSSPFPSPIYLRSPCFLV 206
           VLSRLGITKSSPFPSPIYLRSPCFLV
Sbjct: 181 VLSRLGITKSSPFPSPIYLRSPCFLV 206


>gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score = 37.7 bits (86), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 34  GRGHAEHLMPAIDYALKDSRLEVSQVDRVVTALGPGSFTGVRVSIAVARGISLVLKQPAL 93
            R H + L   I   L  + +++S +D +    GPG   G+ V +  A+ IS V  +P  
Sbjct: 56  ARAHVDVLDILIKQTLLRANMQISDMDSIAVTAGPGLMGGLIVGLMTAKAISYVSHKPFY 115

Query: 94  GVGNLE-VLARAHLDSHVGRPIMVLV 118
            + +LE  +  A L   +  P +VL+
Sbjct: 116 AINHLEGHILTARLTDDIAFPYLVLL 141


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 23.1 bits (48), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 137 CSDPVLLNYEQTRSEVDNFEGEIVGSGLSAIRGIENDID 175
           C   +LL+Y++ R  +D    + +      + G EN ID
Sbjct: 911 CMSNILLSYDENRQTLDKKLSDHIDVLRQNLAGSENKID 949


>gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 609

 Score = 21.9 bits (45), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 154 NFEGEIVGSGLSAIRGIENDIDHLPMDVLSR 184
           +FE +++   L  I G+  D+ + P+D L +
Sbjct: 127 SFEVDLLQKSLDKIEGVIVDVPYNPIDSLWK 157


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,490
Number of Sequences: 1233
Number of extensions: 5280
Number of successful extensions: 13
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 206
length of database: 328,796
effective HSP length: 70
effective length of query: 136
effective length of database: 242,486
effective search space: 32978096
effective search space used: 32978096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)