Query gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 189
No_of_seqs 141 out of 1544
Neff 5.9
Searched_HMMs 33803
Date Wed Jun 1 12:49:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780430.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2k1h_A Uncharacterized protei 99.9 9.8E-28 2.9E-32 193.6 6.4 89 1-90 2-91 (94)
2 >1pqx_A Conserved hypothetical 99.9 5.3E-28 1.6E-32 195.3 3.5 89 1-90 2-91 (91)
3 >1veh_A NIFU-like protein hiri 99.9 2.9E-24 8.6E-29 172.0 8.9 81 109-189 6-86 (92)
4 >1xhj_A Nitrogen fixation prot 99.9 2.6E-23 7.7E-28 166.1 9.4 77 112-189 3-79 (88)
5 >2z51_A NIFU-like protein 2, c 99.9 6.1E-23 1.8E-27 163.7 8.0 74 115-189 3-76 (81)
6 >2z51_A NIFU-like protein 2, c 99.8 1.3E-19 3.9E-24 143.0 8.0 71 114-189 2-73 (73)
7 >1th5_A NIFU1; iron-sulfur clu 99.8 4.1E-19 1.2E-23 139.9 4.3 70 115-189 3-73 (74)
8 >3lno_A Putative uncharacteriz 93.0 0.17 5E-06 30.1 4.6 73 115-188 7-83 (92)
9 >3cq1_A Putative uncharacteriz 76.1 6.1 0.00018 20.4 5.1 70 116-187 6-78 (103)
10 >1sq1_A Chorismate synthase; s 67.6 3.3 9.8E-05 22.0 2.1 68 26-97 75-148 (165)
11 >1r53_A Chorismate synthase; t 63.5 2.9 8.6E-05 22.3 1.2 36 26-65 84-119 (182)
12 >2o11_A Chorismate synthase; s 57.9 4.8 0.00014 21.0 1.5 65 34-98 82-156 (213)
13 >1um0_A Chorismate synthase; b 57.6 6 0.00018 20.4 1.9 29 37-65 84-112 (154)
14 >1qxo_A Chorismate synthase; b 53.7 11 0.00032 18.8 2.7 31 35-65 83-113 (161)
15 >1q1l_A Chorismate synthase; b 51.7 12 0.00036 18.4 2.7 26 38-63 253-278 (401)
16 >2rli_A SCO2 protein homolog, 48.8 16 0.00048 17.7 3.0 10 47-56 61-70 (171)
17 >2i3y_A Epididymal secretory g 48.7 15 0.00044 17.9 2.8 10 147-156 186-195 (215)
18 >2k02_A Ferrous iron transport 47.7 5.5 0.00016 20.6 0.4 35 120-164 32-67 (87)
19 >2p5q_A Glutathione peroxidase 46.4 16 0.00046 17.8 2.6 10 147-156 143-152 (170)
20 >2ggt_A SCO1 protein homolog, 45.9 20 0.00059 17.1 3.1 10 147-156 136-145 (164)
21 >1xn7_A Hypothetical protein Y 45.7 6 0.00018 20.4 0.4 24 137-164 43-67 (78)
22 >3cmi_A Peroxiredoxin HYR1; th 45.3 16 0.00046 17.8 2.5 18 46-63 60-77 (171)
23 >1uwd_A Hypothetical protein T 43.7 25 0.00073 16.6 4.4 69 117-187 7-79 (88)
24 >2obi_A PHGPX, GPX-4, phosphol 43.2 21 0.00062 17.0 2.9 19 136-154 36-54 (183)
25 >2b7k_A SCO1 protein; metalloc 42.4 23 0.00068 16.7 3.0 12 146-157 153-164 (200)
26 >2v1m_A Glutathione peroxidase 39.4 23 0.00069 16.7 2.6 11 46-56 60-70 (169)
27 >2p31_A CL683, glutathione per 36.0 29 0.00085 16.1 2.6 10 147-156 156-165 (181)
28 >2ywi_A Hypothetical conserved 34.6 23 0.00069 16.7 2.0 15 165-179 162-176 (196)
29 >2r37_A Glutathione peroxidase 33.0 36 0.0011 15.5 2.9 29 146-179 167-195 (207)
30 >2bmx_A Alkyl hydroperoxidase 30.9 23 0.00069 16.7 1.5 15 46-60 75-89 (195)
31 >1kdx_A CBP; complex (transcri 26.2 26 0.00077 16.4 1.1 14 72-85 9-22 (81)
32 >3eur_A Uncharacterized protei 25.1 50 0.0015 14.6 2.9 34 135-168 19-53 (142)
33 >1xg8_A Hypothetical protein S 24.8 50 0.0015 14.6 2.9 24 158-182 22-45 (111)
34 >2axo_A Hypothetical protein A 24.4 51 0.0015 14.6 2.6 49 32-85 50-104 (270)
35 >2k6v_A Putative cytochrome C 22.6 30 0.0009 16.0 0.8 10 147-156 146-155 (172)
36 >1zye_A Thioredoxin-dependent 22.4 50 0.0015 14.6 1.9 32 146-177 155-186 (220)
37 >2rdz_A Cytochrome C-552; deca 21.6 57 0.0017 14.3 2.1 40 138-177 113-153 (249)
38 >3ia1_A THIO-disulfide isomera 21.3 59 0.0018 14.2 2.6 10 147-156 119-128 (154)
39 >1ufw_A Synaptojanin 2; RNP do 21.1 58 0.0017 14.2 2.0 21 136-156 35-55 (83)
40 >2f8a_A Glutathione peroxidase 20.6 61 0.0018 14.1 3.1 27 146-177 181-207 (208)
No 1
>>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Staphylococcus epidermidis atcc 12228} (A:)
Probab=99.94 E-value=9.8e-28 Score=193.64 Aligned_cols=89 Identities=21% Similarity=0.429 Sum_probs=83.5
Q ss_pred CEEECCCCCCHHHHHHHCCCEECCCCCEECCCHHHCCCCHHHHHHHHCCCCEEEEECCCEEEEEEC-CCCCHHHHHHHHH
Q ss_conf 910211488722435417975437886430696670134688987416881079980877998314-6682123489999
Q gi|254780430|r 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLG 79 (189)
Q Consensus 1 m~I~~e~TPNPn~lKFi~~~~i~~~g~~~f~~~~~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK~-~~eW~~i~p~I~~ 79 (189)
|||++|+|||||+|||++++.+.+.|+..|+ .+++..+|||++||+++||++||++.|||||+|+ +++|++|+|+|++
T Consensus 2 ~~i~~e~TPNPn~lKF~~~~~l~~~~~~~~~-~~~a~~spLa~~LF~i~gV~~Vf~~~dfItVtK~~~~dW~~l~~~I~~ 80 (94)
T 2k1h_A 2 EIIAISETPNHNTMKVSLSEPRQDNSFTTYT-AAQEGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIEN 80 (94)
T ss_dssp CCCCCBCCSSSSCEEEECCCCCTTCCCCEEC-CCCTTSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCEEEECCCEEECCCCEEEC-CCCCCCCHHHHHHHCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 7797025889577787179716448714506-401014999999876889636997198899985899998999999999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999740143
Q gi|254780430|r 80 MIMEHFISGDP 90 (189)
Q Consensus 80 ~I~~~l~~g~~ 90 (189)
+|++||.+|..
T Consensus 81 ~i~~~l~sg~~ 91 (94)
T 2k1h_A 81 TFAKSNLEHHH 91 (94)
T ss_dssp HHHHHC-----
T ss_pred HHHHHCCCCCC
T ss_conf 98660530012
No 2
>>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} (A:)
Probab=99.94 E-value=5.3e-28 Score=195.29 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=83.2
Q ss_pred CEEECCCCCCHHHHHHHCCCEECCCCCEECCCHHHCCCCHHHHHHHHCCCCEEEEECCCEEEEEEC-CCCCHHHHHHHHH
Q ss_conf 910211488722435417975437886430696670134688987416881079980877998314-6682123489999
Q gi|254780430|r 1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLG 79 (189)
Q Consensus 1 m~I~~e~TPNPn~lKFi~~~~i~~~g~~~f~~~~~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK~-~~eW~~i~p~I~~ 79 (189)
|||++|+|||||+|||++++.+.. |...|.+.+++..+|||++||+++||++||++.|||||+|. +++|++|+|+|++
T Consensus 2 ~~I~~e~TPNPn~lKF~~~~~l~~-~~~~~~~~~~a~~spLA~~LF~i~gV~~Vf~~~dFItVtK~~~~dW~~i~p~I~~ 80 (91)
T 1pqx_A 2 KIISISETPNHNTMKITLSESREG-MTSDTYTKVDDSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEA 80 (91)
T ss_dssp CCCBCCCCSCSSEEEEECSCCSSC-CCCEEESSSCSSCCHHHHHHHHSTTEEEEEEETTEEEEEECTTSCSTTTHHHHHH
T ss_pred CEEEECCCCCCCCEEEECCCCCCC-CCCEECCCHHHHCCHHHHHHHCCCCEEEEEEECCEEEEEECCCCCHHHHHHHHHH
T ss_conf 678703698920688815965047-8720217345405999999873678338998598999983799998999999999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999740143
Q gi|254780430|r 80 MIMEHFISGDP 90 (189)
Q Consensus 80 ~I~~~l~~g~~ 90 (189)
+|++||.+|.+
T Consensus 81 ~i~~~l~sg~e 91 (91)
T 1pqx_A 81 VFELEHHHHHH 91 (91)
T ss_dssp HTCSCCCCCCC
T ss_pred HHHCCCCCCCC
T ss_conf 97120032469
No 3
>>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} (A:)
Probab=99.91 E-value=2.9e-24 Score=171.99 Aligned_cols=81 Identities=47% Similarity=0.922 Sum_probs=76.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 44544026889999999998777787528975999643347999963664666668999999999999997897003553
Q gi|254780430|r 109 DFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 (189)
Q Consensus 109 ~~~~~~~~~~~~i~~~l~~~IrP~l~~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~ 188 (189)
....+++++.++|+++|+++|||+|++|||||+|+++++|+|||+|+|||+|||||..||+++||++|++++|++..|++
T Consensus 6 ~~~~~~~~~~~~i~~~l~~~IrP~l~~dGGdi~lv~v~~g~v~v~l~GaC~gCp~s~~Tl~~~Ie~~L~~~~p~v~~V~~ 85 (92)
T 1veh_A 6 SGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ 85 (92)
T ss_dssp SSCSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 78876289999999999984176789669976999960887899827878998408999999999999997898665987
Q ss_pred C
Q ss_conf 9
Q gi|254780430|r 189 V 189 (189)
Q Consensus 189 v 189 (189)
|
T Consensus 86 v 86 (92)
T 1veh_A 86 V 86 (92)
T ss_dssp C
T ss_pred C
T ss_conf 2
No 4
>>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structure initiative, NESG, PSI; NMR {Staphylococcus epidermidis atcc 12228} (A:)
Probab=99.89 E-value=2.6e-23 Score=166.06 Aligned_cols=77 Identities=38% Similarity=0.713 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 440268899999999987777875289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 112 ~~~~~~~~~i~~~l~~~IrP~l~~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
.+++++.++|+++|++ |||+|++||||++++++++|+|||+|+|||+|||||..||+++||++||+++|++..|++|
T Consensus 3 ~~~~~~~~~I~~~Le~-IRP~L~~dGGdv~lv~v~~g~v~Vrl~GaC~gC~~s~~Tl~~~Ie~~L~~~ip~~~~V~~v 79 (88)
T 1xhj_A 3 TENPTMFDQVAEVIER-LRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp CCCSCHHHHHHHHHHH-HHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHH-HHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8768899999999998-6689996799679986679999999647888980189999999999999878997779997
No 5
>>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A (A:1-81)
Probab=99.88 E-value=6.1e-23 Score=163.72 Aligned_cols=74 Identities=28% Similarity=0.650 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 268899999999987777875289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 115 SAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 115 ~~~~~~i~~~l~~~IrP~l~~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
+++.++|+++|++ |||+|++||||++|+++++|+|||+|+|||+|||||..||+++||.+||+++|+++.|+.|
T Consensus 3 ~~~~~~i~~~le~-IRP~L~~dGGdi~lv~v~~g~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~p~~~~V~~v 76 (81)
T 2z51_A 3 PLTEENVESVLDE-IRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEAL 76 (81)
T ss_dssp CSCHHHHHHHHHH-HHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred CCCHHHHHHHHHH-HCHHHHHCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8789999999998-5679885598479998019989999826878994379999999999999998753111001
No 6
>>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A (A:82-154)
Probab=99.80 E-value=1.3e-19 Score=142.98 Aligned_cols=71 Identities=21% Similarity=0.401 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 026889999999998777787528-9759996433479999636646666689999999999999978970035539
Q gi|254780430|r 114 DSAVVQRIKEVLDNRVRPAVARDG-GDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 114 ~~~~~~~i~~~l~~~IrP~l~~dG-G~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
++++.++|+++|++ |||+|++|| ||++|+++++|+|||+|+|||+||| ||+++||++|++++|++..|++|
T Consensus 2 ~~~~~~~I~~~L~~-iRP~L~~DggGdielv~v~~~~V~v~l~GaC~gCp----Tl~~~Ie~~l~~~ip~i~~V~~V 73 (73)
T 2z51_A 2 LELNEENIEKVLEE-IRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVM----TVRVAVTQKLREKIPSIAAVQLI 73 (73)
T ss_dssp CCSSHHHHHHHHHH-HGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGCH----HHHHHHHHHHHHHCTTCCEEEEC
T ss_pred CCCHHHHHHHHHHC-CCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCC----CHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 21002455665430-35887778885399999969989999658866775----39999999999869996189969
No 7
>>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} (A:)
Probab=99.76 E-value=4.1e-19 Score=139.88 Aligned_cols=70 Identities=20% Similarity=0.413 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 26889999999998777787-5289759996433479999636646666689999999999999978970035539
Q gi|254780430|r 115 SAVVQRIKEVLDNRVRPAVA-RDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRTV 189 (189)
Q Consensus 115 ~~~~~~i~~~l~~~IrP~l~-~dGG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~v 189 (189)
+++.++|+++|++ |||+++ +||||++|+++++|+|||+|+|||+|||+ |+++||++|++++|+++.|++|
T Consensus 3 ~~~~~~I~~~L~~-irp~l~~~dGGdielv~v~~~~V~V~l~GaC~gCpT----l~~~Ie~~L~~~ipei~~V~~V 73 (74)
T 1th5_A 3 ELNEENVEKVLNE-IRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRT----VRIAVSKKLREKIPSIQIVQLL 73 (74)
T ss_dssp CCSHHHHHHHHTT-THHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSSS----HHHHHHHHHHHHCTTCSEEEEC
T ss_pred CCCHHHHHHHHHH-HCHHHHHCCCCEEEEEEECCCEEEEEECCCCCCCHH----HHHHHHHHHHHHCCCCCEEEEC
T ss_conf 6689999999998-563040268971999995299999995588765405----9999999999879984089944
No 8
>>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} (A:1-92)
Probab=92.98 E-value=0.17 Score=30.06 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HCCCCEEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 26889999999998777787---528975999643-347999963664666668999999999999997897003553
Q gi|254780430|r 115 SAVVQRIKEVLDNRVRPAVA---RDGGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188 (189)
Q Consensus 115 ~~~~~~i~~~l~~~IrP~l~---~dGG~i~~~~~~-~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~~ 188 (189)
....++|.+.|.+-+-|.+. -+=|-|.-+.++ +|.|.+.|.-.+.+||... ++.+.++..|+.++|.+..|..
T Consensus 7 ~~~~~~V~~aL~~V~DP~~g~div~lglV~~i~v~~~~~V~v~l~lt~p~~~~~~-~i~~~i~~al~~~l~gv~~v~V 83 (92)
T 3lno_A 7 EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITXTXTSIGCPXAG-QIVSDVKKVLSTNVPEVNEIEV 83 (92)
T ss_dssp HHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHH-HHHHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHCCCEEEEEECCCCEEEEEEEECCCCCCHHH-HHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8899999999808889999989445587577897449979999995899977699-9999999999973899743999
No 9
>>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* (A:)
Probab=76.09 E-value=6.1 Score=20.35 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHC---CCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 688999999999877778752---897599964334799996366466666899999999999999789700355
Q gi|254780430|r 116 AVVQRIKEVLDNRVRPAVARD---GGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 (189)
Q Consensus 116 ~~~~~i~~~l~~~IrP~l~~d---GG~i~~~~~~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~ 187 (189)
...++|.+.|..-.-|.+..+ =|-|.-+.+++|.|++.|.=.+.+||.... +.+.++..|+ .+|.+++|.
T Consensus 6 ~~~~~i~~aL~~V~DP~~~~~Iv~lg~V~~i~i~~~~V~v~l~l~~~~~~~~~~-i~~~i~~~l~-~l~gv~~V~ 78 (103)
T 3cq1_A 6 PLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRXTLTTPGCPLHDS-LGEAVRQALS-RLPGVEEVE 78 (103)
T ss_dssp HHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCSSCH-HHHHHHHHHH-TSTTCCEEE
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEECCCCEEEEECCCCCCCHHHH-HHHHHHHHHH-CCCCCCEEE
T ss_conf 789999999816889899988444577215788658357288079999867899-9999999998-189975089
No 10
>>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric protein, PSI, protein structure initiative; 2.80A {Campylobacter jejuni} (A:145-309)
Probab=67.59 E-value=3.3 Score=21.99 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCEECCCHHHCCCCHHHHHHHHCCCCEEEEECCCEEEEEE------CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8643069667013468898741688107998087799831------46682123489999999997401432323211
Q gi|254780430|r 26 GAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK------DQYDWEHLRPPVLGMIMEHFISGDPIIHNGGL 97 (189)
Q Consensus 26 g~~~f~~~~~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK------~~~eW~~i~p~I~~~I~~~l~~g~~~i~~~~~ 97 (189)
|+..|.+. ++.||+.||.||.|+.|-++..|-.-++ |...|..-+..-..=|.--+.+|.|++-....
T Consensus 75 G~p~f~kL----da~LA~a~~SIpAvKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~~GGi~GGISnG~pI~~rva~ 148 (165)
T 1sq1_A 75 GEVLYDKL----DSKLAHALXGINAVKAVEIGEGINASKXRGSCNNDALKDGKFLSNHSGGILGGISNGENLILKTYF 148 (165)
T ss_dssp SBTTTBCH----HHHHHHHHHTSTTEEEEEETTGGGGGGSCHHHHCCCCSSSSCSCCTTCSEETTEEBSSCEEEEEEE
T ss_pred CCCCCCCC----CHHHHHHHHCCCCEEEEECCCCEEEEECCHHHCCCHHHCCCCCCCCCCCEEECCCCCCCEEEEEEE
T ss_conf 86002640----258887763464310254167626401026647213313665445788611223588873899997
No 11
>>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} (A:148-329)
Probab=63.48 E-value=2.9 Score=22.33 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=28.2
Q ss_pred CCEECCCHHHCCCCHHHHHHHHCCCCEEEEECCCEEEEEE
Q ss_conf 8643069667013468898741688107998087799831
Q gi|254780430|r 26 GAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGK 65 (189)
Q Consensus 26 g~~~f~~~~~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK 65 (189)
|+..|.+. ++.||+.||.|+.|+.|-++..|-...+
T Consensus 84 G~p~f~kL----da~lA~a~msI~AvKgvEiG~Gf~~a~~ 119 (182)
T 1r53_A 84 GEPCFDKL----EAMLAHAMLSIPASKGFEIGSGFQGVSV 119 (182)
T ss_dssp SBTTTBCH----HHHHHHHHHTSTTBCCCEETTTTGGGGS
T ss_pred CCCCCCCC----HHHHHHHHHCCCCEEEEEECCCCCHHHC
T ss_conf 77132732----3899998607623378885244115336
No 12
>>2o11_A Chorismate synthase; shikimate pathway, lyase; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A (A:160-372)
Probab=57.91 E-value=4.8 Score=20.96 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=39.1
Q ss_pred HHCCCCHHHHHHHHCCCCEEEEECCCEEEEEE------CCCCCHHHH----HHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 67013468898741688107998087799831------466821234----899999999974014323232112
Q gi|254780430|r 34 KEAEISPLASRIFSIPGIASVYFGYDFITVGK------DQYDWEHLR----PPVLGMIMEHFISGDPIIHNGGLG 98 (189)
Q Consensus 34 ~~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK------~~~eW~~i~----p~I~~~I~~~l~~g~~~i~~~~~~ 98 (189)
++.-++.||+.+|.||.|+.|-++..|=..+. |..-|++=+ ..-..=|..-+.+|.|++-.....
T Consensus 82 ddkLda~la~a~mSIpAvKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~~~~tN~~GGi~GGIsnG~pIv~r~~~K 156 (213)
T 2o11_A 82 DHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVRSTNRAGGLEGGMTNGQPLRVRAAMK 156 (213)
T ss_dssp GGSHHHHHHHHHHTSTTEEEEEETTHHHHTTSCHHHHSCCCBCCTTSCBCSCCTTTTEETTEECSSCEEEEEEEC
T ss_pred CCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCEECCCCCEEECCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 677587998766246534457725757775633877477520125674574467654345668998679999977
No 13
>>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} (A:146-299)
Probab=57.63 E-value=6 Score=20.39 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHCCCCEEEEECCCEEEEEE
Q ss_conf 13468898741688107998087799831
Q gi|254780430|r 37 EISPLASRIFSIPGIASVYFGYDFITVGK 65 (189)
Q Consensus 37 ~~spLa~~Lf~i~GV~~Vfi~~nFITVtK 65 (189)
-++.||+.+|.|+.|+.|-++..|=..++
T Consensus 84 Lda~lA~a~~sIpAvKgve~G~Gf~~a~~ 112 (154)
T 1um0_A 84 LDAKIAEAMMGLNGVKAVEIGKGVESSLL 112 (154)
T ss_dssp HHHHHHHHHHTSTTEEEEEETTGGGGGGS
T ss_pred CCHHHHHHHHCCCCEEEEECCCCHHHHHC
T ss_conf 04689987742543234540653777756
No 14
>>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} (A:155-315)
Probab=53.71 E-value=11 Score=18.76 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=24.3
Q ss_pred HCCCCHHHHHHHHCCCCEEEEECCCEEEEEE
Q ss_conf 7013468898741688107998087799831
Q gi|254780430|r 35 EAEISPLASRIFSIPGIASVYFGYDFITVGK 65 (189)
Q Consensus 35 ~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK 65 (189)
+.-++.||+.||.||.|+.|-++..|-.-.+
T Consensus 83 ~kLda~La~a~~SIpAVKgvE~G~Gf~~a~~ 113 (161)
T 1qxo_A 83 RKLDARLAQAVVSINAFKGVEFGLGFEAGYR 113 (161)
T ss_dssp GCHHHHHHHHHHTSTTEEEEEETTGGGGGGS
T ss_pred CCCHHHHHHHHHCCHHHHHHHCCCCHHHHHC
T ss_conf 5435999998716244520030554756527
No 15
>>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} (A:)
Probab=51.68 E-value=12 Score=18.44 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=11.4
Q ss_pred CCHHHHHHHHCCCCEEEEECCCEEEE
Q ss_conf 34688987416881079980877998
Q gi|254780430|r 38 ISPLASRIFSIPGIASVYFGYDFITV 63 (189)
Q Consensus 38 ~spLa~~Lf~i~GV~~Vfi~~nFITV 63 (189)
++.||+.||.||.|+.|-++..|-.-
T Consensus 253 da~LA~A~~sIpAvKgvE~G~GF~~a 278 (401)
T 1q1l_A 253 DGRIAQAXXSIQAIKGVEIGLGFEAA 278 (401)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHCCCCCEEEECCCCHHHH
T ss_conf 08999987365013023105426678
No 16
>>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} (A:)
Probab=48.81 E-value=16 Score=17.71 Aligned_cols=10 Identities=20% Similarity=0.733 Sum_probs=4.1
Q ss_pred HCCCCEEEEE
Q ss_conf 1688107998
Q gi|254780430|r 47 SIPGIASVYF 56 (189)
Q Consensus 47 ~i~GV~~Vfi 56 (189)
...+|.-|.+
T Consensus 61 ~~~~~~vi~i 70 (171)
T 2rli_A 61 GLPPVQPVFI 70 (171)
T ss_dssp TSCCEEEEEE
T ss_pred CCCCCCEECC
T ss_conf 4443200001
No 17
>>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, structural genomics; 2.00A {Homo sapiens} (A:)
Probab=48.73 E-value=15 Score=17.90 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=4.1
Q ss_pred CCEEEEEECC
Q ss_conf 3479999636
Q gi|254780430|r 147 DGIVFLSMRG 156 (189)
Q Consensus 147 ~g~v~v~~~G 156 (189)
+|.+.-++.|
T Consensus 186 ~G~i~~~~~~ 195 (215)
T 2i3y_A 186 DGIPVMRWSH 195 (215)
T ss_dssp TSCEEEEECT
T ss_pred CCCEEEEECC
T ss_conf 9938989799
No 18
>>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} (A:)
Probab=47.66 E-value=5.5 Score=20.63 Aligned_cols=35 Identities=26% Similarity=0.600 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEE-CCEEEEEECCCCCCCHHH
Q ss_conf 999999998777787528975999643-347999963664666668
Q gi|254780430|r 120 RIKEVLDNRVRPAVARDGGDIVFKGYR-DGIVFLSMRGACSGCPSA 164 (189)
Q Consensus 120 ~i~~~l~~~IrP~l~~dGG~i~~~~~~-~g~v~v~~~GaC~~Cpss 164 (189)
.|+..|+. -.-=|-++-++-+ +|. |.|+|.+||-+
T Consensus 32 lV~AMLer------L~aMGKierie~~~sgC----LsGSCKsCPE~ 67 (87)
T 2k02_A 32 LIDAMLER------MEAMGKVVRISETSEGC----LSGSCKSCPEG 67 (87)
T ss_dssp HHHHHHHH------HHTTCCSEEEEEECCSS----CSSSSSSCSSC
T ss_pred HHHHHHHH------HHHCCCEEEECCCCCCC----CCCCCCCCCCC
T ss_conf 99999999------98735767603455756----47777899975
No 19
>>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A (A:)
Probab=46.41 E-value=16 Score=17.79 Aligned_cols=10 Identities=30% Similarity=0.172 Sum_probs=3.5
Q ss_pred CCEEEEEECC
Q ss_conf 3479999636
Q gi|254780430|r 147 DGIVFLSMRG 156 (189)
Q Consensus 147 ~g~v~v~~~G 156 (189)
+|.+.-.+.|
T Consensus 143 ~G~i~~~~~~ 152 (170)
T 2p5q_A 143 DGQVVDRYYP 152 (170)
T ss_dssp TSCEEEEECT
T ss_pred CCCEEEEECC
T ss_conf 9859989699
No 20
>>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} (A:)
Probab=45.91 E-value=20 Score=17.12 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=3.7
Q ss_pred CCEEEEEECC
Q ss_conf 3479999636
Q gi|254780430|r 147 DGIVFLSMRG 156 (189)
Q Consensus 147 ~g~v~v~~~G 156 (189)
+|.+.-++.|
T Consensus 136 ~G~i~~~~~~ 145 (164)
T 2ggt_A 136 DGEFLDYFGQ 145 (164)
T ss_dssp TSCEEEEEET
T ss_pred CCEEEEEECC
T ss_conf 9819999799
No 21
>>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} (A:)
Probab=45.65 E-value=6 Score=20.37 Aligned_cols=24 Identities=33% Similarity=0.693 Sum_probs=16.0
Q ss_pred CCCEEEEEEE-CCEEEEEECCCCCCCHHH
Q ss_conf 8975999643-347999963664666668
Q gi|254780430|r 137 GGDIVFKGYR-DGIVFLSMRGACSGCPSA 164 (189)
Q Consensus 137 GG~i~~~~~~-~g~v~v~~~GaC~~Cpss 164 (189)
=|-++-++-+ +|. |.|+|.+||-.
T Consensus 43 MGK~erie~d~sgC----LsGsCKsCPE~ 67 (78)
T 1xn7_A 43 MGKAVRIQEEPDGC----LSGSCKSCPEG 67 (78)
T ss_dssp HTSEEEECCCCCCC----CCSSCCCCCCC
T ss_pred CCCEEECCCCCCCC----CCCCCCCCCCC
T ss_conf 03434512355656----37777899986
No 22
>>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, cytoplasm, oxidoreductase, peroxidase, redox-active center; 2.02A {Saccharomyces cerevisiae} (A:)
Probab=45.28 E-value=16 Score=17.80 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=9.4
Q ss_pred HHCCCCEEEEECCCEEEE
Q ss_conf 416881079980877998
Q gi|254780430|r 46 FSIPGIASVYFGYDFITV 63 (189)
Q Consensus 46 f~i~GV~~Vfi~~nFITV 63 (189)
|.-.++.-+++....++.
T Consensus 60 ~~~~~~~~~~v~~~~~~~ 77 (171)
T 3cmi_A 60 YKDEGFTIIGFPCNQFGH 77 (171)
T ss_dssp HGGGTEEEEEEEECSCC-
T ss_pred HHCCCCCCCCCCCCCCCC
T ss_conf 102464322100254466
No 23
>>1uwd_A Hypothetical protein TM0487; structural genomics, unknown function, contains PAAD domain, similar to PAAD protein, unknown activity; NMR {Thermotoga maritima} (A:1-88)
Probab=43.71 E-value=25 Score=16.55 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHC---CCCEEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 88999999999877778752---8975999643-34799996366466666899999999999999789700355
Q gi|254780430|r 117 VVQRIKEVLDNRVRPAVARD---GGDIVFKGYR-DGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIR 187 (189)
Q Consensus 117 ~~~~i~~~l~~~IrP~l~~d---GG~i~~~~~~-~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~vpev~~V~ 187 (189)
..++|.+.|.+-+.|.+..| -|-|+=+.++ +|.|.+.|.=.+.+||.... |+..++..|+. +|.+++|.
T Consensus 7 t~~~V~~aL~~v~DP~~~~div~lg~V~~i~v~~dg~V~v~i~l~~~~~~~~~~-l~~~i~~~l~~-l~gv~~v~ 79 (88)
T 1uwd_A 7 TKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGM-ILSDAEEAIKK-IEGVNNVE 79 (88)
T ss_dssp CHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHH-HHHHHHHHHHT-SSSCCEEE
T ss_pred CHHHHHHHHHCCCCCCCCCCEEECCEEEEEEECCCCCEEEEEECCCCCCCHHHH-HHHHHHHHHHC-CCCCCCEE
T ss_conf 899999998568899999371443604456651456536888637899962899-99999999973-89975089
No 24
>>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} (A:)
Probab=43.19 E-value=21 Score=16.99 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=6.8
Q ss_pred CCCCEEEEEEECCEEEEEE
Q ss_conf 2897599964334799996
Q gi|254780430|r 136 DGGDIVFKGYRDGIVFLSM 154 (189)
Q Consensus 136 dGG~i~~~~~~~g~v~v~~ 154 (189)
+|..+.+.++++..+.|.+
T Consensus 36 ~G~~~~l~d~~GK~~lv~f 54 (183)
T 2obi_A 36 DGHMVNLDKYRGFVCIVTN 54 (183)
T ss_dssp TSCEEEGGGGTTSEEEEEE
T ss_pred CCCEECHHHHCCCEEEEEE
T ss_conf 9699608991998899999
No 25
>>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} (A:)
Probab=42.35 E-value=23 Score=16.73 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=6.5
Q ss_pred ECCEEEEEECCC
Q ss_conf 334799996366
Q gi|254780430|r 146 RDGIVFLSMRGA 157 (189)
Q Consensus 146 ~~g~v~v~~~Ga 157 (189)
++|.+.-.+.|.
T Consensus 153 ~~G~i~~~~~~~ 164 (200)
T 2b7k_A 153 PEGQFVDALGRN 164 (200)
T ss_dssp TTSCEEEEECTT
T ss_pred CCCCEEEEECCC
T ss_conf 998699898899
No 26
>>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A (A:)
Probab=39.45 E-value=23 Score=16.71 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=5.0
Q ss_pred HHCCCCEEEEE
Q ss_conf 41688107998
Q gi|254780430|r 46 FSIPGIASVYF 56 (189)
Q Consensus 46 f~i~GV~~Vfi 56 (189)
|.=.|+.-+++
T Consensus 60 ~~~~~~~vv~i 70 (169)
T 2v1m_A 60 LVGKGLRILAF 70 (169)
T ss_dssp HGGGTEEEEEE
T ss_pred CCCCCCCCEEE
T ss_conf 00021111022
No 27
>>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, structural genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} (A:)
Probab=35.96 E-value=29 Score=16.15 Aligned_cols=10 Identities=30% Similarity=0.219 Sum_probs=3.6
Q ss_pred CCEEEEEECC
Q ss_conf 3479999636
Q gi|254780430|r 147 DGIVFLSMRG 156 (189)
Q Consensus 147 ~g~v~v~~~G 156 (189)
+|.+.-++.|
T Consensus 156 ~G~i~~~~~~ 165 (181)
T 2p31_A 156 DGKVVGAWDP 165 (181)
T ss_dssp TSCEEEEECT
T ss_pred CCCEEEEECC
T ss_conf 9989989689
No 28
>>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA; 1.60A {Geobacillus kaustophilus HTA426} (A:)
Probab=34.59 E-value=23 Score=16.70 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999997
Q gi|254780430|r 165 SETLKYGVANILNHF 179 (189)
Q Consensus 165 ~~Tl~~gie~~l~~~ 179 (189)
...+++.|+.++...
T Consensus 162 ~~~l~~~i~~l~~~~ 176 (196)
T 2ywi_A 162 GESIRAALDALLEGR 176 (196)
T ss_dssp CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 899999999998179
No 29
>>2r37_A Glutathione peroxidase 3; plasma, structural genomics consortium, SGC, oxidoreductase, polymorphism, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} (A:)
Probab=33.04 E-value=36 Score=15.51 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=12.9
Q ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3347999963664666668999999999999997
Q gi|254780430|r 146 RDGIVFLSMRGACSGCPSASETLKYGVANILNHF 179 (189)
Q Consensus 146 ~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~~~ 179 (189)
.+|.+.-.+.|.. +...+..-|+..|++.
T Consensus 167 ~~G~i~~~~~~~~-----~~~~~~~~i~~~l~~~ 195 (207)
T 2r37_A 167 PDGIPIMRWHHRT-----TVSNVKMDILSYMRRQ 195 (207)
T ss_dssp TTSCEEEEECTTS-----CHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCC-----CHHHHHHHHHHHHHHH
T ss_conf 9998898879999-----9799999999999988
No 30
>>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in europe, spine; 2.4A {Mycobacterium tuberculosis} (A:)
Probab=30.92 E-value=23 Score=16.70 Aligned_cols=15 Identities=13% Similarity=-0.013 Sum_probs=8.1
Q ss_pred HHCCCCEEEEECCCE
Q ss_conf 416881079980877
Q gi|254780430|r 46 FSIPGIASVYFGYDF 60 (189)
Q Consensus 46 f~i~GV~~Vfi~~nF 60 (189)
|+-.|+.-|.+..+-
T Consensus 75 ~~~~~~~~v~i~~d~ 89 (195)
T 2bmx_A 75 FEDRDAQILGVSIDS 89 (195)
T ss_dssp HHTTTEEEEEEESSC
T ss_pred HCCCCEEEEEECCCC
T ss_conf 125522588630300
No 31
>>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} (A:)
Probab=26.22 E-value=26 Score=16.40 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 23489999999997
Q gi|254780430|r 72 HLRPPVLGMIMEHF 85 (189)
Q Consensus 72 ~i~p~I~~~I~~~l 85 (189)
.|.+.++..+.+-|
T Consensus 9 ~Vt~dlRnhlV~KL 22 (81)
T 1kdx_A 9 HVTQDLRSHLVHKL 22 (81)
T ss_dssp GSCHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHH
T ss_conf 76899999999999
No 32
>>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein structure initiative; HET: MSE; 1.30A {Bacteroides fragilis nctc 9343} (A:)
Probab=25.11 E-value=50 Score=14.65 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=14.3
Q ss_pred HCCCCEEEEEEECCEEEEEEC-CCCCCCHHHHHHH
Q ss_conf 528975999643347999963-6646666689999
Q gi|254780430|r 135 RDGGDIVFKGYRDGIVFLSMR-GACSGCPSASETL 168 (189)
Q Consensus 135 ~dGG~i~~~~~~~g~v~v~~~-GaC~~Cpss~~Tl 168 (189)
.+|..+.+.++++..+.|-+- ..|..|.....-+
T Consensus 19 ~~g~~~~l~d~~gk~~li~f~~t~c~~c~~~~~~~ 53 (142)
T 3eur_A 19 DSGVKGTLYQFPAEYTLLFINNPGCHACAEXIEGL 53 (142)
T ss_dssp TTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHH
T ss_pred CCCCEEEHHHHCCCEEEEEEECCCCCCCHHHHHHH
T ss_conf 99999868995899799998388899707777878
No 33
>>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} (A:)
Probab=24.79 E-value=50 Score=14.61 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=9.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4666668999999999999997897
Q gi|254780430|r 158 CSGCPSASETLKYGVANILNHFVPE 182 (189)
Q Consensus 158 C~~Cpss~~Tl~~gie~~l~~~vpe 182 (189)
|.+-|||..|. .-.+..|++.-|+
T Consensus 22 CVn~PsSkeT~-EWLqaal~RKyp~ 45 (111)
T 1xg8_A 22 CVNAPTSKDIY-DWLQPLLKRKYPN 45 (111)
T ss_dssp GSSSCCHHHHH-HHHHHHHHHHCTT
T ss_pred HCCCCCCHHHH-HHHHHHHHCCCCC
T ss_conf 23899724189-9999998175899
No 34
>>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein structure initiative; 1.80A {Agrobacterium tumefaciens str} (A:)
Probab=24.40 E-value=51 Score=14.56 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=22.2
Q ss_pred CHHHCCCCHHHHHHHHCCCCEEEEECCCEEEEEEC-----CCCCHH-HHHHHHHHHHHHH
Q ss_conf 96670134688987416881079980877998314-----668212-3489999999997
Q gi|254780430|r 32 NAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-----QYDWEH-LRPPVLGMIMEHF 85 (189)
Q Consensus 32 ~~~~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK~-----~~eW~~-i~p~I~~~I~~~l 85 (189)
+..-|...|-|.++++-- --.+++|.+.-. -.-|.| ......+....++
T Consensus 50 TsqgC~~CP~Ad~~l~~~-----~~~~~vi~la~Hv~ywd~lgw~Dpf~~~~~t~rq~~Y 104 (270)
T 2axo_A 50 TSQGCASCPPADEALRKX-----IQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGY 104 (270)
T ss_dssp ECTTCTTCHHHHHHHHHH-----HHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHH-----HCCCCEEEEEECCCCHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 279999978899999998-----4489989999636502125777877681688999999
No 35
>>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} (A:)
Probab=22.59 E-value=30 Score=15.99 Aligned_cols=10 Identities=20% Similarity=0.291 Sum_probs=4.3
Q ss_pred CCEEEEEECC
Q ss_conf 3479999636
Q gi|254780430|r 147 DGIVFLSMRG 156 (189)
Q Consensus 147 ~g~v~v~~~G 156 (189)
+|.+.-.+.|
T Consensus 146 ~G~i~~~~~~ 155 (172)
T 2k6v_A 146 EGRLVLLYSP 155 (172)
T ss_dssp TTEEEEEECH
T ss_pred CCCEEEEECC
T ss_conf 9939999878
No 36
>>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} (A:)
Probab=22.42 E-value=50 Score=14.64 Aligned_cols=32 Identities=19% Similarity=0.041 Sum_probs=18.9
Q ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 33479999636646666689999999999999
Q gi|254780430|r 146 RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 (189)
Q Consensus 146 ~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~ 177 (189)
.+|.+.-+..|...........+.........
T Consensus 155 ~~G~I~~~~~g~~~~~~~~~~~~~~~~~~~~~ 186 (220)
T 1zye_A 155 PNGVIKHLSVNDLPVGRSVEETLRLVKAFQFV 186 (220)
T ss_dssp TTSBEEEEEEECTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99909999996268662899999999985468
No 37
>>2rdz_A Cytochrome C-552; decaheme, reductase, calcium, electron transport, iron, metal-binding, oxidoreductase, periplasm, transport; HET: HEC; 1.74A {Escherichia coli} (A:1-50,A:206-404)
Probab=21.64 E-value=57 Score=14.26 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCEEEEEEECCEEEEEECCCCCCCHH-HHHHHHHHHHHHHH
Q ss_conf 97599964334799996366466666-89999999999999
Q gi|254780430|r 138 GDIVFKGYRDGIVFLSMRGACSGCPS-ASETLKYGVANILN 177 (189)
Q Consensus 138 G~i~~~~~~~g~v~v~~~GaC~~Cps-s~~Tl~~gie~~l~ 177 (189)
++..|.+..=..-.-.+.-+|++|-+ +..+|++.+...-.
T Consensus 113 ~G~k~tdH~~~sPl~~~~~sC~~CH~~s~e~L~~~v~~~Q~ 153 (249)
T 2rdz_A 113 EGKLYTDHKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQ 153 (249)
T ss_dssp TSCEEECCCCCCGGGGGGGTGGGTCCSCHHHHHHHHHHHHH
T ss_pred CCCEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 87600686666877554889986268989999999999998
No 38
>>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.76A {Thermus thermophilus HB27} (A:)
Probab=21.26 E-value=59 Score=14.18 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=3.5
Q ss_pred CCEEEEEECC
Q ss_conf 3479999636
Q gi|254780430|r 147 DGIVFLSMRG 156 (189)
Q Consensus 147 ~g~v~v~~~G 156 (189)
+|.+.-.+.|
T Consensus 119 ~G~i~~~~~g 128 (154)
T 3ia1_A 119 EGKVVALFAG 128 (154)
T ss_dssp TSEEEEEEES
T ss_pred CCEEEEEEEC
T ss_conf 9989999958
No 39
>>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} (A:13-95)
Probab=21.06 E-value=58 Score=14.25 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=17.9
Q ss_pred CCCCEEEEEEECCEEEEEECC
Q ss_conf 289759996433479999636
Q gi|254780430|r 136 DGGDIVFKGYRDGIVFLSMRG 156 (189)
Q Consensus 136 dGG~i~~~~~~~g~v~v~~~G 156 (189)
.=|.|.+++|-.|.+||.+.-
T Consensus 35 ~~GeV~lVR~~~~~~~VtF~D 55 (83)
T 1ufw_A 35 SYGTIVLVRINQGQMLVTFAD 55 (83)
T ss_dssp HHSCCSEEEEETTEEEEECSC
T ss_pred HCCEEEEEEEECCEEEEEECC
T ss_conf 176599999948818999868
No 40
>>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} (A:)
Probab=20.62 E-value=61 Score=14.09 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=12.6
Q ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 33479999636646666689999999999999
Q gi|254780430|r 146 RDGIVFLSMRGACSGCPSASETLKYGVANILN 177 (189)
Q Consensus 146 ~~g~v~v~~~GaC~~Cpss~~Tl~~gie~~l~ 177 (189)
++|.+.-++.|.... ..+..-|+.+|+
T Consensus 181 ~~G~i~~~~~~~~~~-----~~~~~~i~~ll~ 207 (208)
T 2f8a_A 181 PDGVPLRRYSRRFQT-----IDIEPDIEALLS 207 (208)
T ss_dssp TTSCEEEEECTTSCG-----GGGHHHHHHHHC
T ss_pred CCCCEEEEECCCCCH-----HHHHHHHHHHHC
T ss_conf 999499998999997-----999999999976
Done!