HHSEARCH alignment of GI: 254780430 and SCOP domain: d2ffma1

Alignment

Probab=99.89  E-value=1.8e-24  Score=170.80  Aligned_cols=80  Identities=23%  Similarity=0.433  Sum_probs=73.4

Q ss_pred             CEEECCCCCCHHHHHHHCCCEECCCCCEECCCHHHCCCCHHHHHHHHCCCCEEEEECCCEEEEEEC-CCCCHHHHHHHHH
Q ss_conf             910211488722435417975437886430696670134688987416881079980877998314-6682123489999
Q gi|254780430|r    1 MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDFITVGKD-QYDWEHLRPPVLG   79 (189)
Q Consensus         1 m~I~~e~TPNPn~lKFi~~~~i~~~g~~~f~~~~~a~~spLa~~Lf~i~GV~~Vfi~~nFITVtK~-~~eW~~i~p~I~~   79 (189)
                      ++|++|+|||||+|||++++.+..+|+.+|.+.++ ..+|||++||+++||++||+++|||||+|. +++|++|+|+|++
T Consensus         2 ~~I~~e~TPNPn~lKFi~~~~l~~~~~~~~~~~~~-~~~pla~~Lf~i~gV~~Vf~~~dFITVtK~~~~~W~~l~~~I~~   80 (83)
T d2ffma1           2 KIISISETPNHNTMKITLSESREGMTSDTYTKVDD-SQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEA   80 (83)
T ss_dssp             CEEEEEECSSSSEEEEEESSCCSSSCCEEECSCCT-TSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHH
T ss_pred             CEEECCCCCCCCCEEEECCCCCCCCCCEEECCHHH-HCCHHHHHHHCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHH
T ss_conf             67871469892068882696525797202083455-04999999874779418998599999982799998999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780430|r   80 MI   81 (189)
Q Consensus        80 ~I   81 (189)
                      ++
T Consensus        81 ~~   82 (83)
T d2ffma1          81 VF   82 (83)
T ss_dssp             TT
T ss_pred             HH
T ss_conf             75

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein SAV1430
superfamily: Hypothetical protein SAV1430
family: Hypothetical protein SAV1430
domain: Hypothetical protein SAV1430
species: Staphylococcus aureus [TaxId: 1280]