RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780430|ref|YP_003064843.1| nitrogen fixation protein
[Candidatus Liberibacter asiaticus str. psy62]
         (189 letters)



>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 92

 Score =  104 bits (260), Expect = 6e-24
 Identities = 38/78 (48%), Positives = 56/78 (71%)

Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171
           E D  VV  IKE+LD R+RP V  DGGD++++G+ DGIV L ++G+C+ CPS+  TLK G
Sbjct: 9   EEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSG 68

Query: 172 VANILNHFVPEVKDIRTV 189
           + N+L  ++PEV+ +  V
Sbjct: 69  IQNMLQFYIPEVEGVEQV 86


>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 83

 Score = 99.1 bits (247), Expect = 2e-22
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 1  MFIQTEDTPNPATLKFIPGQVVLVEGAIHFSNAKEAEISPLASRIFSIPGIASVYFGYDF 60
            I   +TPN  T+K    +      +  ++   +++     + I  + G+ S++   DF
Sbjct: 2  KIISISETPNHNTMKITLSESREGMTSDTYTKVDDSQ-PAFINDILKVEGVKSIFHVMDF 60

Query: 61 ITVGK-DQYDWEHLRPPV 77
          I+V K +  +WE + P V
Sbjct: 61 ISVDKENDANWETVLPKV 78


>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630
           {Staphylococcus epidermidis [TaxId: 1282]}
          Length = 88

 Score = 95.3 bits (237), Expect = 3e-21
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 112 ESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYG 171
             +  +  ++ EV++ R+RP + RDGGD       DGIV L + GAC  CPS++ TLK G
Sbjct: 3   TENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAG 61

Query: 172 VANILNHFVPEVKDIRTV 189
           +   L+  VP V ++  V
Sbjct: 62  IERALHEEVPGVIEVEQV 79


>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice
           (Oryza sativa) [TaxId: 4530]}
          Length = 73

 Score = 74.0 bits (182), Expect = 8e-15
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 119 QRIKEVLDNRVRP-AVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILN 177
           + +++VL+  +RP      GG + F   +  IV + + G  +       T++  V+  L 
Sbjct: 6   ENVEKVLN-EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVR----TVRIAVSKKLR 60

Query: 178 HFVPEVKDIRTV 189
             +P ++ ++ +
Sbjct: 61  EKIPSIQIVQLL 72


>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage
           K1F [TaxId: 344021]}
          Length = 516

 Score = 25.0 bits (54), Expect = 4.1
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 93  HNGGLGDMKLDDMGSGDFIESDSAVVQRIKEVLDNRVRPAVARDGGDIVFKGYRDGIVFL 152
           H G +   ++      D   S S  V+R       ++      D  +   K Y DG+++L
Sbjct: 298 HQGDVAPREVGLFYFPDAFNSPSNYVRR-------QIPSEYEPDASEPCIKYY-DGVLYL 349

Query: 153 SMRGACSGCPSAS 165
             RG       +S
Sbjct: 350 ITRGTRGDRLGSS 362


>d2fb5a1 d.320.1.1 (A:5-205) Hypothetical protein BC4920 (YojJ)
           {Bacillus cereus [TaxId: 1396]}
          Length = 201

 Score = 24.4 bits (53), Expect = 6.5
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 165 SETLKYGVANILNHFVPEVKDIR 187
           SE LK     ++     E+  +R
Sbjct: 7   SEELKIQTKQMIEIAEKELSIMR 29


>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase
           {Thermoanaerobacterium [TaxId: 28895]}
          Length = 406

 Score = 24.3 bits (51), Expect = 7.5
 Identities = 6/46 (13%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 29  HFSNAKEAEISPLASRIFSIPGIASVYFGYDF-ITVGKDQYDWEHL 73
            ++      +    +   +  G+ ++Y+G +  +T   D Y+   +
Sbjct: 333 FYNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMM 378


>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan
           maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
          Length = 357

 Score = 24.1 bits (51), Expect = 8.7
 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 8/28 (28%)

Query: 45  IFSIPGIASVYFGYDFITVGKDQYDWEH 72
           I + PG   VY+           YDW +
Sbjct: 322 ILTSPGTPVVYWD--------HMYDWGY 341


>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon
           Pyrococcus woesei [TaxId: 2262]}
          Length = 361

 Score = 24.1 bits (51), Expect = 8.7
 Identities = 4/28 (14%), Positives = 10/28 (35%), Gaps = 8/28 (28%)

Query: 45  IFSIPGIASVYFGYDFITVGKDQYDWEH 72
           I +  G   +++         D  +W +
Sbjct: 303 ILTYEGQPVIFYR--------DFEEWLN 322


>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli
           [TaxId: 562]}
          Length = 168

 Score = 24.0 bits (52), Expect = 9.1
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 121 IKEVLDNRVRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSAS 165
            +EV+DN V  A+A     +    + D  + +       G P   
Sbjct: 10  GQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDD--GRGMPVDI 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0400    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 749,701
Number of extensions: 35361
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 16
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)