HHsearch alignment for GI: 254780431 and conserved domain: pfam04297
>pfam04297 UPF0122 Putative helix-turn-helix protein, YlxM / p13 like. Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13. Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway.
Probab=92.70 E-value=0.24 Score=30.46 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 789999999999818658899999678543466667775
Q gi|254780431|r 4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR 42 (178)
Q Consensus 4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR 42 (178)
T Consensus 19 T~KQ~~~~~lyy~eDlSL~EIAe~~~-iSRQaV~D~ikR 56 (101)
T pfam04297 19 TDKQKNYFELYYLDDLSLSEIAEEFN-VSRQAVYDNIKR 56 (101)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHH
T ss_conf 59999999999876398999998819-859999999999