HHsearch alignment for GI: 254780431 and conserved domain: pfam07750
>pfam07750 GcrA GcrA cell cycle regulator. GcrA is a master cell cycle regulator that, together with CtrA (see pfam00072 and pfam00486), is involved in controlling cell cycle progression and asymmetric polar morphogenesis. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery.
Probab=100.00 E-value=0 Score=431.66 Aligned_cols=162 Identities=44% Similarity=0.789 Sum_probs=129.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97778999999999981865889999967854346666777514554455544444432233322234454322222223
Q gi|254780431|r 1 MVWTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGNRKNVTLGSTSPKTRQSSNVY 80 (178)
Q Consensus 1 MsWTderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (178)
T Consensus 1 MsWTdErve~LkkLW~eGlSaSqIA~~LGgvTRNAVIGKaHRLgLs~R~~~~~~~~~~~~~~~~~~~~~~~~-------- 72 (162)
T pfam07750 1 MNWTDERVELLKKLWLEGLSASQIAAQLGGVSRNAVIGKVHRLGLSGRAKPMSPTAAPARPKRAGPPAAAPR-------- 72 (162)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
T ss_conf 988889999999999853659999999765540000002242255656677766667776566677544445--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHH
Q ss_conf 33443211100000124544556223444334453111563333684320055789986450047878768887716888
Q gi|254780431|r 81 ICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISRCLRLMELTDNTCKWPLGDPFGKDFSFCGSDVCNDSPYCDYHK 160 (178)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sLl~Lte~tCkWPiGDP~~~dF~FCG~~~~~g~PYC~~H~ 160 (178)
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~CrWPiGdP~~~dF~FCG~~~~~g~pYC~~H~ 148 (162)
T pfam07750 73 ----PSAGRTALQLELPAEVALEPAAPVVERIVVPMPRRLQLLELGEATCRWPIGDPLSEDFAFCGNKSSEGSPYCAPHA 148 (162)
T ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf ----5666542233445454446444532111254454444300676766188889898886542888989895339999
Q ss_pred HHHCCCCCCHHHHH
Q ss_conf 88705775102344
Q gi|254780431|r 161 KLAYQRVNDRRKVQ 174 (178)
Q Consensus 161 ~iAYQP~~~rr~~~ 174 (178)
T Consensus 149 ~~AyqP~~~rr~~r 162 (162)
T pfam07750 149 RLAYQPGAERRRMR 162 (162)
T ss_pred HHHCCCCCHHHCCC
T ss_conf 98648864000049