HHsearch alignment of GI: 254780431 and MMDB domain: 1pdn_C_17-69

>1pdn_C (C:17-69) Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster}

Probab=92.77  E-value=0.24  Score=30.07  Aligned_cols=42  Identities=21%  Similarity=0.219  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf             9999999999818658899999678543466667775145544
Q gi|254780431|r    6 ERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNR   48 (178)
Q Consensus         6 erve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRLgLs~R   48 (178)
                      |=-+++-+++.+|+|..|||++|| ||+|.|+-=++|.--.+.
T Consensus         5 DlR~riv~~~~~G~s~~~aA~~f~-VS~~tv~k~~~r~~etG~   46 (53)
T 1pdn_C            5 NIRLKIVEMAADGIRPCVISRQLR-VSHGCVSKILNRYQETGS   46 (53)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHHHCCC
T ss_conf             999999999986999999999889-689999999999873598