HHSEARCH alignment of GI: 254780431 and SCOP domain: d1a04a1

Alignment

Probab=90.97  E-value=0.2  Score=28.08  Aligned_cols=43  Identities=30%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH----HCCCCC
Q ss_conf             789999999999818658899999678543466667775----145544
Q gi|254780431|r    4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHR----LFLSNR   48 (178)
Q Consensus         4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hR----LgLs~R   48 (178)
                      |+--.+.|. |+.+|+|..|||.+|| +|.+.|-.-+.+    ||..+|
T Consensus         8 T~rE~~vl~-ll~~G~s~~eIA~~l~-iS~~TV~~~~~~i~~Klgv~~r   54 (67)
T d1a04a1           8 TPRERDILK-LIAQGLPNKMIARRLD-ITESTVKVHVKHMLKKMKLKSR   54 (67)
T ss_dssp             CHHHHHHHH-HHHTTCCHHHHHHHHT-CCHHHHHHHHHHHHHHHTCCSH
T ss_pred             CHHHHHHHH-HHHHCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCH
T ss_conf             999999999-9996799899999978-8888999999999998199999

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: C-terminal effector domain of the bipartite response regulators
family: GerE-like (LuxR/UhpA family of transcriptional regulators)
domain: Nitrate/nitrite response regulator (NarL)
species: Escherichia coli [TaxId: 562]