HHSEARCH alignment of GI: 254780431 and SCOP domain: d1rp3a2

Alignment
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=91.09  E-value=0.16  Score=28.62  Aligned_cols=39  Identities=15%  Similarity=0.083  Sum_probs=32.3

Q ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             7899999999998186588999996785434666677751
Q gi|254780431|r    4 TVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL   43 (178)
Q Consensus         4 Tderve~LkkLW~eG~SasqIA~~lGgvtRNAVIGK~hRL   43 (178)
                      ++.--+.+.-.+-+|+|..|||..|| +|.++|=-..||.
T Consensus        23 ~~~~r~v~~l~~~~~~s~~eIA~~lg-is~~tv~~~~~ra   61 (71)
T d1rp3a2          23 PEREKLVIQLIFYEELPAKEVAKILE-TSVSRVSQLKAKA   61 (71)
T ss_dssp             CHHHHHHHHHHHTSCCCHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf             99999999999868489999999979-8999999999999


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: Sigma4 domain
domain: Sigma factor sigma-28 (FliA)
species: Aquifex aeolicus [TaxId: 63363]