BLAST/PSIBLAST alignment of GI: 254780431 and GI: 49473780 at iteration 1
>gi|49473780|ref|YP_031822.1| hypothetical protein BQ01020 [Bartonella quintana str. Toulouse] Length = 177
>gi|49239283|emb|CAF25608.1| hypothetical protein BQ01020 [Bartonella quintana str. Toulouse] Length = 177
 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 117/179 (65%), Gaps = 8/179 (4%)

Query: 1   MVWTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGN 60
           M WT ER++ LKKFWSEGLSASQIA QLGGV+RNAVIGK+HRL L  R K  +   S   
Sbjct: 1   MGWTCERVELLKKFWSEGLSASQIASQLGGVSRNAVIGKVHRLKLPGRSKTAQGI-SRAQ 59

Query: 61  RKNVTLGSTSPKTRQSSNVYICEPVLKGQLPVVRSKRKSKSM-----EKNNTISSGIVLP 115
           +  V + S++P+ R++ +  +  P       V  +  K   +     E + +  S +V+P
Sbjct: 60  KTVVGVSSSAPRMRRTPSTIL--PTNAASCSVGATALKMDVVTEDVAEVDMSAKSNVVVP 117

Query: 116 ISRCLRLMELTDNTCKWPLGDPFGKDFSFCGSDVCNDSPYCDYHKKLAYQRVNDRRKVQ 174
           ISR L L++L++NTC+WP+GDP   DF FCG+D   +SPYC +H K+A+Q +++RR+++
Sbjct: 118 ISRQLNLLQLSENTCRWPVGDPLSSDFHFCGADSGENSPYCAFHAKIAFQPISERRRIR 176