RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780431|ref|YP_003064844.1| hypothetical protein
CLIBASIA_01580 [Candidatus Liberibacter asiaticus str. psy62]
(178 letters)
>gnl|CDD|116364 pfam07750, GcrA, GcrA cell cycle regulator. GcrA is a master cell
cycle regulator that, together with CtrA (see pfam00072
and pfam00486), is involved in controlling cell cycle
progression and asymmetric polar morphogenesis. During
this process, there are temporal and spatial variations
in the concentrations of GcrA and CtrA. The variation in
concentration produces time and space dependent
transcriptional regulation of modular functions that
implement cell-cycle processes. More specifically, GcrA
acts as an activator of components of the replisome and
the segregation machinery.
Length = 162
Score = 166 bits (423), Expect = 2e-42
Identities = 75/177 (42%), Positives = 98/177 (55%), Gaps = 20/177 (11%)
Query: 1 MVWTVERIDKLKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRLFLSNRVKVNENKQSDGN 60
M WT ER++ LKK W EGLSASQIA QLGGV+RNAVIGK+HRL LS R K +
Sbjct: 1 MNWTDERVELLKKLWLEGLSASQIAAQLGGVSRNAVIGKVHRLGLSGRAKPMSPTAAPAR 60
Query: 61 RKNVTLGSTSPKTRQSSNV----YICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPI 116
K + +P+ E L+ PVV IV+P+
Sbjct: 61 PKRAGPPAAAPRPSAGRTALQLELPAEVALEPAAPVVE----------------RIVVPM 104
Query: 117 SRCLRLMELTDNTCKWPLGDPFGKDFSFCGSDVCNDSPYCDYHKKLAYQRVNDRRKV 173
R L+L+EL + TC+WP+GDP +DF+FCG+ SPYC H +LAYQ +RR++
Sbjct: 105 PRRLQLLELGEATCRWPIGDPLSEDFAFCGNKSSEGSPYCAPHARLAYQPGAERRRM 161
>gnl|CDD|132034 TIGR02989, Sig-70_gvs1, RNA polymerase sigma-70 factor,
Rhodopirellula/Verrucomicrobium family. This group of
sigma factors are members of the sigma-70 family
(TIGR02937) and are abundantly found in the species
Rhodopirellula baltica (11), and Verrucomicrobium
spinosum (16) and to a lesser extent in Gemmata
obscuriglobus (2).
Length = 159
Score = 27.6 bits (62), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 11 LKKFWSEGLSASQIAVQLGGVTRNAVIGKLHRL 43
L+ + G+S + +A QL G T NAV L RL
Sbjct: 120 LQLRYQRGVSLTALAEQL-GRTVNAVYKALSRL 151
>gnl|CDD|102352 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 27.2 bits (60), Expect = 2.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 67 GSTSP-KTRQSSNVYICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISR 118
GS S K Q S + E +K PV S K++E + + S + + +SR
Sbjct: 196 GSPSSVKFNQMSELLGMEKNIKN--PVYSSSLYIKTIENISYLISSLAVDLSR 246
>gnl|CDD|163078 TIGR02937, sigma70-ECF, RNA polymerase sigma factor, sigma-70
family. Several PFAM models hit segments of these
sequences including Sigma-70 region 2 (pfam04542) and
Sigma-70, region 4 (pfam04545), but not always above
their respective trusted cutoffs.
Length = 158
Score = 26.9 bits (60), Expect = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 EGLSASQIAVQLGGVTRNAVIGKLHR 42
EGLS +IA L G++ V +L R
Sbjct: 125 EGLSYKEIAEIL-GISVGTVKRRLKR 149
>gnl|CDD|150108 pfam09329, zf-primase, Primase zinc finger. This zinc finger is
found in yeast Mcm10 proteins and DnaG-type primases.
Length = 46
Score = 26.5 bits (59), Expect = 4.0
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 11/43 (25%)
Query: 140 KDFSFCGS-----DVCN------DSPYCDYHKKLAYQRVNDRR 171
+D C + C + +C+YH + AY++ + +R
Sbjct: 4 RDLGTCKAVRKDGKRCTSWVNKRKTEFCEYHVEAAYRKSSSKR 46
>gnl|CDD|163480 TIGR03768, RPA4764, metallophosphoesterase, RPA4764 family. This
model describes a small collection of probable
metallophosphoresterases, related to pfam00149. Members
of this protein family usually have a Sec-independent
TAT (twin-arginine translocation) signal sequence,
N-terminal to the region modeled by this alignment. This
model and TIGR03767 divide a narrow clade of
pfam00149-related enzymes.
Length = 492
Score = 26.0 bits (57), Expect = 5.0
Identities = 8/20 (40%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 136 DPFGKDFSFCGSDVCNDSPY 155
D F DF D CN + Y
Sbjct: 98 DRF--DFGISLGDACNSTQY 115
>gnl|CDD|185491 PTZ00164, PTZ00164, bifunctional dihydrofolate
reductase-thymidylate synthase; Provisional.
Length = 514
Score = 25.8 bits (57), Expect = 6.6
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 60 NRKNVTLGSTSPKTRQSSNVYICE 83
NR NV L T + V +
Sbjct: 80 NRINVVLSRTLTEEEADPGVLVFG 103
>gnl|CDD|183153 PRK11475, PRK11475, DNA-binding transcriptional activator BglJ;
Provisional.
Length = 207
Score = 25.5 bits (56), Expect = 7.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 13 KFWSEGLSASQIAVQL 28
+F S G S QIA QL
Sbjct: 144 RFMSRGYSMPQIAEQL 159
>gnl|CDD|184617 PRK14317, glmM, phosphoglucosamine mutase; Provisional.
Length = 465
Score = 25.3 bits (56), Expect = 8.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 54 NKQSDGNRKNVTLGST 69
+ Q DG+R NV GST
Sbjct: 219 HDQPDGDRINVNCGST 234
>gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase.
Length = 353
Score = 25.2 bits (55), Expect = 9.7
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 81 ICEPVLKGQLPVVRSKRKSKSMEKNNTISSGIVLPISRCL-RLMELTDNTCKWPLGD 136
+ +P +KG L V++S KSK++++ SS L R + D TC+ P+
Sbjct: 109 VIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDH 165
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,648,309
Number of extensions: 142778
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 14
Length of query: 178
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,114,577
Effective search space: 374426507
Effective search space used: 374426507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)