HHsearch alignment for GI: 254780432 and conserved domain: COG0076
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism].
Probab=97.87 E-value=0.00036 Score=47.74 Aligned_cols=289 Identities=16% Similarity=0.121 Sum_probs=138.7
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHH----HHHHCCC-CC--CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 43578789999999999997314506--87578189999986----5201013-33--1235655540356777665432
Q gi|254780432|r 43 VNSLGHSHPELVAILKSQSEKLWHVS--NLYQSTQQEIFANH----LIHSTFA-DR--VFFTNSGAESVECAIKTARRYH 113 (392)
Q Consensus 43 ~~~lGh~~p~i~~a~~~q~~~~~~~~--~~~~~~~~~~la~~----L~~~~~~-~~--v~f~~SGseA~e~Aiklar~~~ 113 (392)
T Consensus 64 ~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~ 143 (460)
T COG0076 64 ANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERW 143 (460)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 56763578886799999999987347998123831588899999999999579976606796170799999999999998
Q ss_pred HCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHCCCCCCC--CCC
Q ss_conf 0013------478600234354656543212345532113479998643332221---00268875410123322--223
Q gi|254780432|r 114 YMAG------KTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAK---FCDLQSLKNQISNDTAA--ILI 182 (392)
Q Consensus 114 ~~~g------~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~---~~d~~~l~~~~~~~iAa--vi~ 182 (392)
T Consensus 144 ~~~~~~~~~~~~~~P~ii~s~-~aH~s~~Kaa~~---------lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~ 213 (460)
T COG0076 144 RKRALAESGKPGGKPNIVCSE-TAHFSFEKAARY---------LGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVG 213 (460)
T ss_pred HHHHHHCCCCCCCCCEEEECC-CCCEEHHHHHHH---------HCCCCEEEEEECCCEEECHHHHHHHHHHHCCCCEEEE
T ss_conf 766442023446887499457-431209999998---------1885237875247505689999999987464764999
Q ss_pred CCCCCCCCCCCC-CHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCC---C-CCCC-CCCEEECC-CCCCCC-CCCC
Q ss_conf 332222112462-1012322110223457213101100344445553101---1-1245-45302103-444444-3443
Q gi|254780432|r 183 EPIQGEGGVRKV-PEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAY---E-WANV-KPDIMTIA-KGMGGG-FPIG 254 (392)
Q Consensus 183 Epv~g~~G~~~~-~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~---e-~~gi-~PDi~~~g-K~l~gG-~P~s 254 (392)
T Consensus 214 -----~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~---pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G 285 (460)
T COG0076 214 -----TAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLL---PFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCG 285 (460)
T ss_pred -----ECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHH---HCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCE
T ss_conf -----72688887778899999999976997898734400211---0247422535178882089988642778888706
Q ss_pred CCCCCCC--CCC------CCCCC-C-CCCCCCCCCC--CHHHHHHHHHHHHCCCCCCHHH---HHCCHHHHHHHHHHHHC
Q ss_conf 2100011--122------22233-2-2345321111--0012334554320122210112---10000268899998867
Q gi|254780432|r 255 ACLATNE--VAA------CMNQG-S-HGSTYGGNVL--AMVLGEKVLNIIQSDGFLENVI---NIAKILFEGLTAIKNRF 319 (392)
Q Consensus 255 av~~~~~--i~~------~~~~~-~-~~~T~~gnpl--~~aaa~a~L~~l~~~~l~~~~~---~~g~~l~~~L~~l~~~~ 319 (392)
T Consensus 286 ~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~--~ 363 (460)
T COG0076 286 VVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLG--D 363 (460)
T ss_pred EEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C
T ss_conf 99996889846776123667787786663688505418999999999996788899999999999999999986478--8
Q ss_pred CCEEEEECCCEEEEEEEECCC---HHHHHHHHHHCCE
Q ss_conf 970755046400999872499---8999999996898
Q gi|254780432|r 320 PNMFLEVRGQGLLIGLKTVFS---PALLAAKFRDECL 353 (392)
Q Consensus 320 ~~~v~~vRG~Gl~~~ie~~~~---~~~~~~~l~~~Gl 353 (392)
T Consensus 364 ~e~~~--~p~l~~V~fr~~~~~~~~~~~~~~~~~~gw 398 (460)
T COG0076 364 FELVN--EPELPIVAFRLKDDEDTLADLSERLDRRGW 398 (460)
T ss_pred CEEEC--CCCCEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 27633--886507999657643202314789986297