HHsearch alignment for GI: 254780432 and conserved domain: PRK05939
>PRK05939 hypothetical protein; Provisional.
Probab=98.80 E-value=7.2e-08 Score=71.92 Aligned_cols=165 Identities=13% Similarity=0.251 Sum_probs=111.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 50687578189999986520101333123565554035677766543200134786002343546565432123455321
Q gi|254780432|r 66 HVSNLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKL 145 (392)
Q Consensus 66 ~~~~~~~~~~~~~la~~L~~~~~~~~v~f~~SGseA~e~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~ 145 (392)
T Consensus 38 ~~YsR~~nPT~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~-~ll------~~Gd-~il~~~~~YG~t~~l-~---~~- 104 (396)
T PRK05939 38 FTYARQGTPTTAALEAKITEMEGGVGTVCFATGMAAIAAVFL-TLL------RAGD-HLVSSQYLFGNTNSL-L---GT- 104 (396)
T ss_pred CEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-HHC------CCCC-EEEECCCCCCHHHHH-H---HH-
T ss_conf 634089986799999999998299749996579999999999-835------8898-899538869229999-9---98-
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 13479998643332221002688754101233222233322221124621012322110223457213101100344445
Q gi|254780432|r 146 QYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRT 225 (392)
Q Consensus 146 ~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRt 225 (392)
T Consensus 105 --l~~~GI---~v~~vd~~d~~~~~~ai~~~Tklv~~EspsNP~-l~v~D---i~~i~~ia~~~g~~~vVDNT~at---- 171 (396)
T PRK05939 105 --LQGLGV---EVTMVDATDVQQVAAAIRPNTRMVFVETIANPG-TQVAD---LAGIGALCRERGLVYVVDNTMTS---- 171 (396)
T ss_pred --HHHCCE---EEEEECCCCHHHHHHHHCCCCCEEEEEECCCCC-CCCCC---HHHHHHHHHHCCCEEEEECCCCH----
T ss_conf --653186---999988979899998618566189998089998-70758---99999999983997999777630----
Q ss_pred CCCCCCCCCCCCCCEEE--CCCCCCCC-CCCCCCCC
Q ss_conf 55310111245453021--03444444-34432100
Q gi|254780432|r 226 GKLFAYEWANVKPDIMT--IAKGMGGG-FPIGACLA 258 (392)
Q Consensus 226 G~~f~~e~~gi~PDi~~--~gK~l~gG-~P~sav~~ 258 (392)
T Consensus 172 --P~~~~Pl~~GaDivvhS~TKyi~GhsD~l~G~vv 205 (396)
T PRK05939 172 --PWLFRPKSVGASLVINSLSKYIAGHGNALGGAVT 205 (396)
T ss_pred --HHHCCHHHHCCCEEEEECCCCCCCCCCEEEEEEE
T ss_conf --4205855638988998343302588774769996