HHsearch alignment for GI: 254780432 and conserved domain: TIGR01140
>TIGR01140 CobD L-threonine-O-3-phosphate decarboxylase, putative; InterPro: IPR005860 L-threonine-O-3-phosphate decarboxylase (CobD) was shown to decarboxylate L-threonine O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, which is the precursor for the linkage between the nucleotide loop and the corrin ring in the biosynthesis of cobalamin . The molecule is a dimer where each subunit consists of a large and small domain . This family contains pyridoxal phosphate-binding class II aminotransferases closely related to histidinol-phosphate aminotransferase (HisC). ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=97.82 E-value=0.00033 Score=47.93 Aligned_cols=314 Identities=20% Similarity=0.263 Sum_probs=186.9
Q ss_pred CCCEEEECHHHHHHHCCCCCCHH-HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCCCCCCCCCCCCHHHHH
Q ss_conf 99764641022674357878999-9999999997314506875781899999865201--01333123565554035677
Q gi|254780432|r 30 NGIPFLDFASGIAVNSLGHSHPE-LVAILKSQSEKLWHVSNLYQSTQQEIFANHLIHS--TFADRVFFTNSGAESVECAI 106 (392)
Q Consensus 30 dG~~yiD~~~g~~~~~lGh~~p~-i~~a~~~q~~~~~~~~~~~~~~~~~~la~~L~~~--~~~~~v~f~~SGseA~e~Ai 106 (392)
T Consensus 3 ~~~~lLDFsAn--inPlgp--P~S~~aa~~~aLd~~~rYPD----~dY~hlrqA~AdH~q~~~dwvl~gnG~~e~i~la~ 74 (349)
T TIGR01140 3 DDDDLLDFSAN--INPLGP--PASVKAALAAALDALERYPD----DDYIHLRQALADHHQVAADWVLAGNGELESIRLAA 74 (349)
T ss_pred CCCCCCCCCCC--CCCCCC--CCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHH
T ss_conf 87430324345--788887--60204589874278760888----43189999986541256012545997278889988
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 76654320013478600234354656--54321234553---21134799986433322210026887541012332222
Q gi|254780432|r 107 KTARRYHYMAGKTNKFRIVTFEGAFH--GRTLATISAGG---KLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAIL 181 (392)
Q Consensus 107 klar~~~~~~g~t~r~~ii~~~~~yH--G~t~~a~s~s~---~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi 181 (392)
T Consensus 75 ~t~~-------~~Gd~~-~V~~P~F~eYgR~~~~~Gae~~ti~w~~~~~~~W~~---~~d-PseiA~l~A~~s~h~~lil 142 (349)
T TIGR01140 75 ETLV-------SRGDAV-LVVAPAFAEYGRELELAGAELKTIRWSLDEADGWRV---LRD-PSEIALLDAVTSEHDLLIL 142 (349)
T ss_pred HHCC-------CCCCEE-EEECCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCC---CCC-HHHHHHHCCCCCCCCEEEE
T ss_conf 6147-------888757-870887026799998569812234577316888745---576-4566541268833135311
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCE-----EECCCCCCC-----CC
Q ss_conf 33322221124621012322110223457213101100344445553101112454530-----210344444-----43
Q gi|254780432|r 182 IEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDI-----MTIAKGMGG-----GF 251 (392)
Q Consensus 182 ~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi-----~~~gK~l~g-----G~ 251 (392)
T Consensus 143 ctPnNPt-G~-l~~r~~l~A~a~rc~~~N~~LllDEAF~dF~pPG~-----E~~l~p~l~~~P~~~vlRSLTKfy~lPGL 215 (349)
T TIGR01140 143 CTPNNPT-GD-LLERDALRALADRCKAVNIELLLDEAFLDFLPPGE-----ETSLVPSLKDTPNVVVLRSLTKFYALPGL 215 (349)
T ss_pred ECCCCCC-CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCHHHCCCCEEEECCHHHHHCCHHH
T ss_conf 1767698-98-62247899999888874046666556515789864-----43434133268978997111554025024
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC----CHHHHHCCHHHHHHHHH--HHHCCCEEE
Q ss_conf 4432100011-1222223322345321111001233455432012221----01121000026889999--886797075
Q gi|254780432|r 252 PIGACLATNE-VAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFL----ENVINIAKILFEGLTAI--KNRFPNMFL 324 (392)
Q Consensus 252 P~sav~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~----~~~~~~g~~l~~~L~~l--~~~~~~~v~ 324 (392)
T Consensus 216 RlGylva~~Da~la~~r~~r--~pW~vnalAaaag~~al~---~sef~q~tw~wl~~erar~~qaL~~lP~l~v~Ps--- 287 (349)
T TIGR01140 216 RLGYLVAVDDALLARLRAAR--RPWSVNALAAAAGAAALR---DSEFRQETWRWLAEERARLRQALADLPLLDVYPS--- 287 (349)
T ss_pred HHHHHHCCCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---
T ss_conf 45455516617899999742--899877689999999876---6789999987436677899999971788755888---
Q ss_pred EECCCEEEEEEEECCCHHHHHH-HHHHCCEEEEEC------CCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 5046400999872499899999-999689899626------898899558986889999999999999
Q gi|254780432|r 325 EVRGQGLLIGLKTVFSPALLAA-KFRDECLLTAPS------SDNVVRILPPLTITAEEIHEGLERIER 385 (392)
Q Consensus 325 ~vRG~Gl~~~ie~~~~~~~~~~-~l~~~Gll~~~~------~~~~irl~Ppl~it~~eid~~i~~l~~ 385 (392)
T Consensus 288 ----~anfLLl~~~~~~~dl~~~llt~~~IliRdc~~fpgLds~~~RVA---vRt~a~N~rLlaALa~ 348 (349)
T TIGR01140 288 ----RANFLLLKVEREDVDLQEELLTKERILIRDCLSFPGLDSDYYRVA---VRTAAENDRLLAALAD 348 (349)
T ss_pred ----CCCCEEEECCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEE---ECCHHHHHHHHHHHHC
T ss_conf ----876114545898688999998743410012057888887527888---5285547899999613