HHsearch alignment for GI: 254780432 and conserved domain: TIGR01328
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237 This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=97.84 E-value=0.00017 Score=49.81 Aligned_cols=283 Identities=16% Similarity=0.234 Sum_probs=173.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45068757818999998652010133312356555403567776654320013478600234354656543212345532
Q gi|254780432|r 65 WHVSNLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGK 144 (392)
Q Consensus 65 ~~~~~~~~~~~~~~la~~L~~~~~~~~v~f~~SGseA~e~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~ 144 (392)
T Consensus 50 Gy~YsRlgNPTv~~LE~riA~LEg~EAavAt~SGMgAi~A~l-~~~----lk--Ag-Dh~i~-d~~lYGCTfall~~--- 117 (392)
T TIGR01328 50 GYVYSRLGNPTVDLLERRIAELEGAEAAVATASGMGAIAATL-LSL----LK--AG-DHVIS-DETLYGCTFALLED--- 117 (392)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HH--CC-CEEEE-CCCCCCCHHHHHHH---
T ss_conf 626852677137788889875420467788751289999999-999----85--28-75774-38742014899873---
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-CEEEECCCCCCCC
Q ss_conf 113479998643332221002688754101233222233322221124621012322110223457-2131011003444
Q gi|254780432|r 145 LQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDID-ALLIFDEVQTGYG 223 (392)
Q Consensus 145 ~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g-~llI~DEV~tG~G 223 (392)
T Consensus 118 --~ltkfgi---~v~f~~~~~pee~~a~i~dnT~ivYfETPaN-Ptm~liD---~e~v~r~A~~~gG~kVivDNTfat-- 186 (392)
T TIGR01328 118 --ALTKFGI---DVKFVDMASPEEVKAAIKDNTKIVYFETPAN-PTMKLID---LELVVRVAHEKGGVKVIVDNTFAT-- 186 (392)
T ss_pred --HHHHHCC---EEEEECCCCHHHHHHHCCCCCEEEEEECCCC-CCHHHHH---HHHHHHHHHHCCCEEEEEECCCCC--
T ss_conf --2677375---2798317877999984489977999865998-7525775---999999997529828998566277--
Q ss_pred CCCCCCCCCCCCCCCCEEEC--CCCCCC-C-CCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCC---HHHHHHHHHHH
Q ss_conf 45553101112454530210--344444-4-34432100011122222332----23453211110---01233455432
Q gi|254780432|r 224 RTGKLFAYEWANVKPDIMTI--AKGMGG-G-FPIGACLATNEVAACMNQGS----HGSTYGGNVLA---MVLGEKVLNII 292 (392)
Q Consensus 224 RtG~~f~~e~~gi~PDi~~~--gK~l~g-G-~P~sav~~~~~i~~~~~~~~----~~~T~~gnpl~---~aaa~a~L~~l 292 (392)
T Consensus 187 ----P~lt~P~alG~D~VVHSATKYigGHgDvVaG~~~G~~e~~q~iR~~g~KD~tG~Vi--SPfdAwL~lRGLkTL~~R 260 (392)
T TIGR01328 187 ----PYLTRPVALGVDVVVHSATKYIGGHGDVVAGVLIGDAELLQRIRLVGVKDMTGAVI--SPFDAWLVLRGLKTLAVR 260 (392)
T ss_pred ----HHHCCHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEE--CHHHHHHHHHHHHHHHHH
T ss_conf ----00138036187768942412137612211221107756674401111000566500--557899997436677788
Q ss_pred HCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEE------------------CCCEEEEEEEECCCHHHHH---HHHH--
Q ss_conf 0122210112100002688999988679707550------------------4640099987249989999---9999--
Q gi|254780432|r 293 QSDGFLENVINIAKILFEGLTAIKNRFPNMFLEV------------------RGQGLLIGLKTVFSPALLA---AKFR-- 349 (392)
Q Consensus 293 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~v~~v------------------RG~Gl~~~ie~~~~~~~~~---~~l~-- 349 (392)
T Consensus 261 -M~rhsenA~kvA--------e~Lk~HPa-Ve~V~YPG~~~hp~hdiaakQM~~gGgm~~F~lKgg~a~~~k~~n~LkLI 330 (392)
T TIGR01328 261 -MKRHSENAEKVA--------EYLKEHPA-VEKVYYPGLEEHPDHDIAAKQMKKGGGMLAFELKGGEADAKKLLNRLKLI 330 (392)
T ss_pred -HHHHHHHHHHHH--------HHHHCCCC-CCEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf -877305389999--------98523886-02123688778887408999874048727754325668999998755576
Q ss_pred ----H----CCEE-----------------EEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ----6----8989-----------------962689889955898688999999999999999985
Q gi|254780432|r 350 ----D----ECLL-----------------TAPSSDNVVRILPPLTITAEEIHEGLERIERTAIKL 390 (392)
Q Consensus 350 ----~----~Gll-----------------~~~~~~~~irl~Ppl~it~~eid~~i~~l~~al~~L 390 (392)
T Consensus 331 r~AVSLGdaEtLIQHPAsMTHavvp~eeR~aaGI~~gm~RlSvG----lEd~~d~~ADl~~aL~~L 392 (392)
T TIGR01328 331 RLAVSLGDAETLIQHPASMTHAVVPKEEREAAGISEGMVRLSVG----LEDVDDVLADLKQALDAL 392 (392)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEECC----HHHHHHHHHHHHHHHCCC
T ss_conf 65531277420005876466789885678444766461223004----526999999999852149