HHsearch alignment for GI: 254780432 and conserved domain: TIGR01885

>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164 Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=100.00  E-value=0  Score=862.14  Aligned_cols=386  Identities=35%  Similarity=0.643  Sum_probs=371.7

Q ss_pred             CCCCEECCCCCCCCEEEEEECCCEEEECCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             84314515588887489850103799679976464102267435787899999999999973145068757818999998
Q gi|254780432|r    2 NKNDFLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQEIFAN   81 (392)
Q Consensus         2 ~~~~~~~~~~~~~p~~i~~a~G~~i~d~dG~~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~~~~~~~~la~   81 (392)
T Consensus        12 ~~~~YgAhnYhPLPV~~~~g~G~~v~D~eG~~Y~D~LSaYSavNqGHchP~i~~Al~~Q~~KlTL~Sraf~nd~lg~~~~   91 (426)
T TIGR01885        12 RESKYGAHNYHPLPVVLQRGKGAYVWDPEGREYLDFLSAYSAVNQGHCHPKIVNALKNQADKLTLTSRAFHNDVLGEFAK   91 (426)
T ss_pred             HCCCCCCCCCCCHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHH
T ss_conf             10234677888247887506830898148888641002554401376771689999999851371027660603578999


Q ss_pred             HHHHHCC--CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf             6520101--3331235655540356777665432001347--86002343546565432123455321-13479998643
Q gi|254780432|r   82 HLIHSTF--ADRVFFTNSGAESVECAIKTARRYHYMAGKT--NKFRIVTFEGAFHGRTLATISAGGKL-QYLEGFGPKIE  156 (392)
Q Consensus        82 ~L~~~~~--~~~v~f~~SGseA~e~Aiklar~~~~~~g~t--~r~~ii~~~~~yHG~t~~a~s~s~~~-~~~~~~~p~~~  156 (392)
T Consensus        92 ~~t~LfgGk~~~vL~mNTGaEAvEtA~KLAR~WgY~~K~ip~~kA~ii~~~GNFhGRTlgA~S~Std~e~~k~~FGPflP  171 (426)
T TIGR01885        92 YLTKLFGGKYEKVLPMNTGAEAVETALKLARKWGYEVKGIPRNKAKIIAASGNFHGRTLGAVSASTDSETSKKGFGPFLP  171 (426)
T ss_pred             HHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHCCCCCCCC
T ss_conf             99975499510560456873479999999997441357855762389985388733035443202672120067879677


Q ss_pred             ------CCCCCCCHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCC
Q ss_conf             ------33222100268875410------123322223332222112462101232211022345721310110034444
Q gi|254780432|r  157 ------GFDQAKFCDLQSLKNQI------SNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGR  224 (392)
Q Consensus       157 ------~~~~~~~~d~~~l~~~~------~~~iAavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GR  224 (392)
T Consensus       172 nvasGhgf~~iPYgd~EAl~~aL~~P~~~GDnVAA~i~EPIQGEAGvvvPp~gYl~~V~~LC~~~nVLfI~DEiQTGlGR  251 (426)
T TIGR01885       172 NVASGHGFRKIPYGDLEALRKALQDPKKTGDNVAAFILEPIQGEAGVVVPPPGYLPGVRALCKEHNVLFIADEIQTGLGR  251 (426)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCH
T ss_conf             43357852115588878999997275778886899995040354436848963578999986551872898200038402


Q ss_pred             CCCCCCCCCCC--CCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             55531011124--545302103444444-3443210001112222233--223453211110012334554320122210
Q gi|254780432|r  225 TGKLFAYEWAN--VKPDIMTIAKGMGGG-FPIGACLATNEVAACMNQG--SHGSTYGGNVLAMVLGEKVLNIIQSDGFLE  299 (392)
Q Consensus       225 tG~~f~~e~~g--i~PDi~~~gK~l~gG-~P~sav~~~~~i~~~~~~~--~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~  299 (392)
T Consensus       252 TGk~la~dh~~aev~PDi~lLGKALsGGv~PiSa~la~~dim~vl~PGPF~HGSTfGGNPLAcavaiAaLeVL~~ekL~~  331 (426)
T TIGR01885       252 TGKLLACDHENAEVKPDIVLLGKALSGGVYPISAVLADDDIMSVLKPGPFEHGSTFGGNPLACAVAIAALEVLEEEKLAE  331 (426)
T ss_pred             HHHHHHHHCCCCEECCCCEEEEHHHCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             54533101058820450335112345894622436664640121176486567768875789999999999874045068


Q ss_pred             HHHHHCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEECCC------HHHHHHHHHHCCEEEEEC-CCCEEEECCCCCCC
Q ss_conf             11210000268899998867970755046400999872499------899999999689899626-89889955898688
Q gi|254780432|r  300 NVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFS------PALLAAKFRDECLLTAPS-SDNVVRILPPLTIT  372 (392)
Q Consensus       300 ~~~~~g~~l~~~L~~l~~~~~~~v~~vRG~Gl~~~ie~~~~------~~~~~~~l~~~Gll~~~~-~~~~irl~Ppl~it  372 (392)
T Consensus       332 ~A~~lG~~f~~~L~~l~~~S~dvv~EVRGkGLL~AIe~~~~ka~~~~~w~~Cl~~k~~GLlak~~nhd~~IR~aPPL~i~  411 (426)
T TIGR01885       332 RADQLGDMFLDELKQLARESPDVVKEVRGKGLLIAIEFKENKADEIGAWDVCLRLKENGLLAKPTNHDKIIRLAPPLVIT  411 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEECCCCCCCEEEECCCCCCC
T ss_conf             89883289999999887507640001156721688885065333264668878852074210133587068717885263


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780432|r  373 AEEIHEGLERIERTA  387 (392)
Q Consensus       373 ~~eid~~i~~l~~al  387 (392)
T Consensus       412 ~E~L~~~ie~i~K~~  426 (426)
T TIGR01885       412 KEQLDEVIEIIRKTL  426 (426)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             899999999986049