HHsearch alignment for GI: 254780432 and conserved domain: TIGR03537

>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.68  E-value=1.2e-14  Score=116.29  Aligned_cols=329  Identities=15%  Similarity=0.174  Sum_probs=185.9

Q ss_pred             EEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHCC----CC-CCCCCCCCCCCHHHHH
Q ss_conf             64641022674357878999999999999731450687578-189999986520101----33-3123565554035677
Q gi|254780432|r   33 PFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQS-TQQEIFANHLIHSTF----AD-RVFFTNSGAESVECAI  106 (392)
Q Consensus        33 ~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~~~-~~~~~la~~L~~~~~----~~-~v~f~~SGseA~e~Ai  106 (392)
T Consensus         1 ~ii~l~~g---~P~~p~P~~i~~al~~a~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~d~~I~~t~Ga~~al~~~~   77 (350)
T TIGR03537         1 RLFDFGTG---DPKEPTPPIIRNALKNAVPEVSQYPSAAGTKALRDAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP   77 (350)
T ss_pred             CEEECCCC---CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf             95787698---999998799999999960215899898474999999999999986899897877998788389999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCC
Q ss_conf             7665432001347860023435465654321234553211347999864333222100268875410123322223-332
Q gi|254780432|r  107 KTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI-EPI  185 (392)
Q Consensus       107 klar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~-Epv  185 (392)
T Consensus        78 ~~~~~----~gd~-~~~Vlv~~P~y~~y~~~~~~~g~~~~~----v~l~~--~~g~~~d~e~l~~~~~~~~~~i~l~nP-  145 (350)
T TIGR03537        78 LVFID----PEED-RRRVIFGTPGYPVYERGALFAGGEPTP----VKLKE--EDGFLLRLEKVDKEILKETKIVWINYP-  145 (350)
T ss_pred             HHHCC----CCCC-CCEEEEECCCCCCHHHHHHHCCCEEEE----EECCC--CCCCCCCHHHHHHHCCCCCEEEEECCC-
T ss_conf             99738----8877-876999469873069999976998999----75355--448877999999746668719998999-


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC----EEECCCCCC-CCCCCCCCCCCC
Q ss_conf             222112462101232211022345721310110034444555310111245453----021034444-443443210001
Q gi|254780432|r  186 QGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPD----IMTIAKGMG-GGFPIGACLATN  260 (392)
Q Consensus       186 ~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PD----i~~~gK~l~-gG~P~sav~~~~  260 (392)
T Consensus       146 ~NPTG~-v~s~~~l~~l~~~a~~~~~~vi~DE~Y~~l~~~~~~~~~--~~~~~~~~i~~~S~SK~~~~pGlR~G~~~~~~  222 (350)
T TIGR03537       146 HNPTGA-VAPRSYLEETIAICQEHNIILCSDECYTEIYFGEPPHSA--LEVGMENVLAFHSLSKRSGMTGYRSGFVAGDE  222 (350)
T ss_pred             CCCCCC-CCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCH--HHHCCCCEEEEECCCCCCCCCCCEEEEEECCH
T ss_conf             898364-769999999998632369079843122455348998775--56346877999667545046775599997899


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEEC--
Q ss_conf             112222233223453211110012334554320122210112100002688999988679707550464009998724--
Q gi|254780432|r  261 EVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV--  338 (392)
Q Consensus       261 ~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~v~~vRG~Gl~~~ie~~--  338 (392)
T Consensus       223 ~li~~~~~~~~~~~~~~~~~~q~a~~~~~---~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~~p~g~~~~w~~~~~~  298 (350)
T TIGR03537       223 KLISFLKKLRANFGVASPDFVQAAAKAAW---SDDSHVIERRKIFRRKRDLFLEFFNKK-GLEYLYPDATFYLWVKVPNG  298 (350)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCEEEEEEECCCC
T ss_conf             99999999862067772899999999995---680999999999999999999998648-98882688225998979999


Q ss_pred             CCHHHHHHHHHHCCEEEEEC------CCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             99899999999689899626------898899558986889999999999999
Q gi|254780432|r  339 FSPALLAAKFRDECLLTAPS------SDNVVRILPPLTITAEEIHEGLERIER  385 (392)
Q Consensus       339 ~~~~~~~~~l~~~Gll~~~~------~~~~irl~Ppl~it~~eid~~i~~l~~  385 (392)
T Consensus       299 ~~~~~~~~~ll~~gV~v~pG~~Fg~~~~~~~Rl~--~~~~~e~l~ealrrl~~  349 (350)
T TIGR03537       299 ISSKDYALRLLENGIVVAPGENFGSGEEGYVRVA--LVPTLEECEEALRIWES  349 (350)
T ss_pred             CCHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEE--EECCHHHHHHHHHHHHC
T ss_conf             8999999999979989976731189999869999--72899999999999861