HHsearch alignment for GI: 254780432 and conserved domain: TIGR03537
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.68 E-value=1.2e-14 Score=116.29 Aligned_cols=329 Identities=15% Similarity=0.174 Sum_probs=185.9
Q ss_pred EEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHCC----CC-CCCCCCCCCCCHHHHH
Q ss_conf 64641022674357878999999999999731450687578-189999986520101----33-3123565554035677
Q gi|254780432|r 33 PFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQS-TQQEIFANHLIHSTF----AD-RVFFTNSGAESVECAI 106 (392)
Q Consensus 33 ~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~~~-~~~~~la~~L~~~~~----~~-~v~f~~SGseA~e~Ai 106 (392)
T Consensus 1 ~ii~l~~g---~P~~p~P~~i~~al~~a~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~d~~I~~t~Ga~~al~~~~ 77 (350)
T TIGR03537 1 RLFDFGTG---DPKEPTPPIIRNALKNAVPEVSQYPSAAGTKALRDAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred CEEECCCC---CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 95787698---999998799999999960215899898474999999999999986899897877998788389999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCC
Q ss_conf 7665432001347860023435465654321234553211347999864333222100268875410123322223-332
Q gi|254780432|r 107 KTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI-EPI 185 (392)
Q Consensus 107 klar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~-Epv 185 (392)
T Consensus 78 ~~~~~----~gd~-~~~Vlv~~P~y~~y~~~~~~~g~~~~~----v~l~~--~~g~~~d~e~l~~~~~~~~~~i~l~nP- 145 (350)
T TIGR03537 78 LVFID----PEED-RRRVIFGTPGYPVYERGALFAGGEPTP----VKLKE--EDGFLLRLEKVDKEILKETKIVWINYP- 145 (350)
T ss_pred HHHCC----CCCC-CCEEEEECCCCCCHHHHHHHCCCEEEE----EECCC--CCCCCCCHHHHHHHCCCCCEEEEECCC-
T ss_conf 99738----8877-876999469873069999976998999----75355--448877999999746668719998999-
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC----EEECCCCCC-CCCCCCCCCCCC
Q ss_conf 222112462101232211022345721310110034444555310111245453----021034444-443443210001
Q gi|254780432|r 186 QGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPD----IMTIAKGMG-GGFPIGACLATN 260 (392)
Q Consensus 186 ~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PD----i~~~gK~l~-gG~P~sav~~~~ 260 (392)
T Consensus 146 ~NPTG~-v~s~~~l~~l~~~a~~~~~~vi~DE~Y~~l~~~~~~~~~--~~~~~~~~i~~~S~SK~~~~pGlR~G~~~~~~ 222 (350)
T TIGR03537 146 HNPTGA-VAPRSYLEETIAICQEHNIILCSDECYTEIYFGEPPHSA--LEVGMENVLAFHSLSKRSGMTGYRSGFVAGDE 222 (350)
T ss_pred CCCCCC-CCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCH--HHHCCCCEEEEECCCCCCCCCCCEEEEEECCH
T ss_conf 898364-769999999998632369079843122455348998775--56346877999667545046775599997899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEEC--
Q ss_conf 112222233223453211110012334554320122210112100002688999988679707550464009998724--
Q gi|254780432|r 261 EVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV-- 338 (392)
Q Consensus 261 ~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~v~~vRG~Gl~~~ie~~-- 338 (392)
T Consensus 223 ~li~~~~~~~~~~~~~~~~~~q~a~~~~~---~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~~p~g~~~~w~~~~~~ 298 (350)
T TIGR03537 223 KLISFLKKLRANFGVASPDFVQAAAKAAW---SDDSHVIERRKIFRRKRDLFLEFFNKK-GLEYLYPDATFYLWVKVPNG 298 (350)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCEEEEEEECCCC
T ss_conf 99999999862067772899999999995---680999999999999999999998648-98882688225998979999
Q ss_pred CCHHHHHHHHHHCCEEEEEC------CCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99899999999689899626------898899558986889999999999999
Q gi|254780432|r 339 FSPALLAAKFRDECLLTAPS------SDNVVRILPPLTITAEEIHEGLERIER 385 (392)
Q Consensus 339 ~~~~~~~~~l~~~Gll~~~~------~~~~irl~Ppl~it~~eid~~i~~l~~ 385 (392)
T Consensus 299 ~~~~~~~~~ll~~gV~v~pG~~Fg~~~~~~~Rl~--~~~~~e~l~ealrrl~~ 349 (350)
T TIGR03537 299 ISSKDYALRLLENGIVVAPGENFGSGEEGYVRVA--LVPTLEECEEALRIWES 349 (350)
T ss_pred CCHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEE--EECCHHHHHHHHHHHHC
T ss_conf 8999999999979989976731189999869999--72899999999999861