HHsearch alignment for GI: 254780432 and conserved domain: TIGR03538
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.64 E-value=4.1e-14 Score=112.71 Aligned_cols=337 Identities=13% Similarity=0.081 Sum_probs=191.6
Q ss_pred EEECCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHCC-------CCCCCCCCC
Q ss_conf 99679976464102267435787899999999999973145068757-8189999986520101-------333123565
Q gi|254780432|r 26 LFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQ-STQQEIFANHLIHSTF-------ADRVFFTNS 97 (392)
Q Consensus 26 i~d~dG~~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~~~~~~~~-~~~~~~la~~L~~~~~-------~~~v~f~~S 97 (392)
T Consensus 23 ~~~~~g~~iI~L~iG--~Pd~~-~P~~v~ea~~~al~~~~~Y~~~~G~~~LReAia~~~~~~~~~~~~~dp~~~I~vt~G 99 (394)
T TIGR03538 23 VTPPASLPPIALSIG--EPKHA-TPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNG 99 (394)
T ss_pred HHHHCCCCEEECCCC--CCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
T ss_conf 034089987878488--89999-779999999998438889999988699999999999997398877896776998988
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 5540356777665432001347860-023435465654321234553211347999864333222100268875410123
Q gi|254780432|r 98 GAESVECAIKTARRYHYMAGKTNKF-RIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISND 176 (392)
Q Consensus 98 GseA~e~Aiklar~~~~~~g~t~r~-~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~ 176 (392)
T Consensus 100 a~~al~~~~~~l~-------~pGd~~~V~~p~P~Y~~y~~~~~~~g~~~~~----v~~~~--e~~~~~d~~~l~~~~~~~ 166 (394)
T TIGR03538 100 TREALFAFAQAVI-------NPGQAPLVVMPNPFYQIYEGAALLAGAEPYF----LNCTA--ENGFLPDFDAVPESVWRR 166 (394)
T ss_pred HHHHHHHHHHHHC-------CCCCCEEEEECCCCCCCCHHHHHHCCCEEEE----CCCCC--CCCCCCCHHHHHHHCCCC
T ss_conf 8999999999972-------9998108994788664529999975998997----58673--458888999998745236
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC--CC-CC---CCCC-CC-C-EE--ECCC
Q ss_conf 3222233322221124621012322110223457213101100344445553--10-11---1245-45-3-02--1034
Q gi|254780432|r 177 TAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKL--FA-YE---WANV-KP-D-IM--TIAK 245 (392)
Q Consensus 177 iAavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~--f~-~e---~~gi-~P-D-i~--~~gK 245 (392)
T Consensus 167 tk~iil~sP~NPTG~-v~s~~~l~~l~~~a~~~~i~iisDE~Y~~l~~d~~~~p~~~~~~~~~~~~~~~~~~i~~~S~SK 245 (394)
T TIGR03538 167 CQLLFVCSPGNPTGA-VLSLETLKKLIELADQYGFIIASDECYSELYFDEANPPAGLLQAAAALGRDDFRRCLVFHSLSK 245 (394)
T ss_pred CEEEEECCCCCCCCC-CCCHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 659998899999897-7787999999999732676999806833278578889737877776625444476799955654
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEE
Q ss_conf 444-4434432100011122222332234532111100123345543201222101121000026889999886797075
Q gi|254780432|r 246 GMG-GGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFL 324 (392)
Q Consensus 246 ~l~-gG~P~sav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~v~ 324 (392)
T Consensus 246 ~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~aa~---~~~~~---~~~~r~~~~~r~~~~~~~L~~~~~ 319 (394)
T TIGR03538 246 RSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPPPTQLASIAAW---NDEQH---VRENRALYREKFAAVLEILGPVLD 319 (394)
T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH---CCHHH---HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 445467517999579999999998522374268999999999984---89899---999999999999999998642796
Q ss_pred EECCCE-EEEEEEECCCHHHHHHHH-HHCCEEEEEC------------CCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 504640-099987249989999999-9689899626------------89889955898688999999999999999
Q gi|254780432|r 325 EVRGQG-LLIGLKTVFSPALLAAKF-RDECLLTAPS------------SDNVVRILPPLTITAEEIHEGLERIERTA 387 (392)
Q Consensus 325 ~vRG~G-l~~~ie~~~~~~~~~~~l-~~~Gll~~~~------------~~~~irl~Ppl~it~~eid~~i~~l~~al 387 (392)
T Consensus 320 ~~~P~Gg~y~w~~~~~~~~~f~~~ll~e~gV~v~PG~~F~~~~~~~~~G~g~iR~s--~~~~~e~l~ea~~Rl~~fl 394 (394)
T TIGR03538 320 LELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRYLSREAEGVNPGAGRVRIA--LVAPLEECVEAAERIRRFI 394 (394)
T ss_pred CCCCCEEEEEEEECCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHC
T ss_conf 25798548999968999999999999868999987734165545788899989999--7598999999999999869