HHsearch alignment for GI: 254780432 and conserved domain: TIGR03540
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.66 E-value=1.7e-14 Score=115.18 Aligned_cols=329 Identities=16% Similarity=0.198 Sum_probs=190.6
Q ss_pred CCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCC---CCCCCCCCHHHHHHHHHHHHHCC----CCC-CCCCCCCCC
Q ss_conf 7997646410226743578789999999999997314---50687578189999986520101----333-123565554
Q gi|254780432|r 29 ENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLW---HVSNLYQSTQQEIFANHLIHSTF----ADR-VFFTNSGAE 100 (392)
Q Consensus 29 ~dG~~yiD~~~g~~~~~lGh~~p~i~~a~~~q~~~~~---~~~~~~~~~~~~~la~~L~~~~~----~~~-v~f~~SGse 100 (392)
T Consensus 26 ~~G~dvi~l~ig--~pdf~-~p~~i~~a~~~a~~~~~~~~Y~~~~G~~~lreaia~~~~~~~g~~~~p~~~vi~t~Ga~~ 102 (383)
T TIGR03540 26 AEGVDVISLGIG--DPDLP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKE 102 (383)
T ss_pred HCCCCEEECCCC--CCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHH
T ss_conf 569985888899--89999-899999999999828887654998784999999999999986898996766998478259
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 03567776654320013478600234354656543212345532113479998643332221002688754101233222
Q gi|254780432|r 101 SVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAI 180 (392)
Q Consensus 101 A~e~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAav 180 (392)
T Consensus 103 al~~~~~~l~-------~pG-D~Vli~~P~Y~~y~~~~~~~g~~~v~----vpl~~~--~~~~~d~e~l~~~~~~~~k~i 168 (383)
T TIGR03540 103 GIAHIPLAFV-------NPG-DIVLVPDPGYPVYRIGTLFAGGEPYE----MPLKEE--NGFLPDFDAIPEDIAKKAKLM 168 (383)
T ss_pred HHHHHHHHHC-------CCC-CEEEECCCCCCCHHHHHHHCCCEEEE----EECCCC--CCCCCCHHHHHHHCCCCCEEE
T ss_conf 9999999966-------898-98998789860169999971985899----613357--798579999987452377499
Q ss_pred CC-CCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC-CCCCCCCCCC----EEECCCCCC-CCCCC
Q ss_conf 23-33222211246210123221102234572131011003444455531-0111245453----021034444-44344
Q gi|254780432|r 181 LI-EPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLF-AYEWANVKPD----IMTIAKGMG-GGFPI 253 (392)
Q Consensus 181 i~-Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f-~~e~~gi~PD----i~~~gK~l~-gG~P~ 253 (392)
T Consensus 169 il~~P-~NPTG~-v~s~~~l~~i~~la~~~~i~iIsDEiY~~l~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~Ri 246 (383)
T TIGR03540 169 FINYP-NNPTGA-VAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRI 246 (383)
T ss_pred EECCC-CCCCCC-CCCCHHHHCCCCCCCCCCCEEECCHHHHHHCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCEE
T ss_conf 98999-897070-1210222201001245540576110255530389999771113665542577630235447887348
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH----HHHHCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 32100011122222332234532111100123345543201222101----12100002688999988679707550464
Q gi|254780432|r 254 GACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLEN----VINIAKILFEGLTAIKNRFPNMFLEVRGQ 329 (392)
Q Consensus 254 sav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~----~~~~g~~l~~~L~~l~~~~~~~v~~vRG~ 329 (392)
T Consensus 247 G~~i~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~al~~~--~~~~~~~~~~~~~~r~~~~~~L~~~-----g~-~~~~p~ 318 (383)
T TIGR03540 247 GMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP--QDVVKEIRKIYQRRRDLLLEALKKI-----GI-DVEKPK 318 (383)
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHHC-----CC-EEECCC
T ss_conf 962289999999999975513567659999999998591--9999999999999999999999876-----98-773578
Q ss_pred E-EEEEEEECC--CHHHHHHHHH-HCCEEEEEC------CCCEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0-099987249--9899999999-689899626------8988995589868899999999999999
Q gi|254780432|r 330 G-LLIGLKTVF--SPALLAAKFR-DECLLTAPS------SDNVVRILPPLTITAEEIHEGLERIERT 386 (392)
Q Consensus 330 G-l~~~ie~~~--~~~~~~~~l~-~~Gll~~~~------~~~~irl~Ppl~it~~eid~~i~~l~~a 386 (392)
T Consensus 319 g~~~~w~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~~~iRl~--~~~~~e~l~eal~RL~kl 383 (383)
T TIGR03540 319 ATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRIS--LTVPDERLEEAVARIKKL 383 (383)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEE--EECCHHHHHHHHHHHHCC
T ss_conf 05799898999989899999999839999988853288998869999--869999999999998449