HHsearch alignment for GI: 254780432 and conserved domain: TIGR03576
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=96.94 E-value=0.0024 Score=42.36 Aligned_cols=243 Identities=15% Similarity=0.190 Sum_probs=128.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 33123565554035677766543200134786002343546565432123455321134799986433322210026887
Q gi|254780432|r 90 DRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSL 169 (392)
Q Consensus 90 ~~v~f~~SGseA~e~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l 169 (392)
T Consensus 72 e~~v~~NRTSsailAtI-laL------~~~~~~-Vvh~vPe~----------paHPSI~rs--c~lagaey~E~d~~~el 131 (346)
T TIGR03576 72 EKILVFNRTSSAILATI-LAL------EPPGRK-VVHYLPEK----------PAHPSIPRS--CKLAGAEYFESDELSEL 131 (346)
T ss_pred CEEEEECCCHHHHHHHH-HHH------CCCCCE-EEEECCCC----------CCCCCCCCC--CEECCCCEEECCCHHHH
T ss_conf 25777456269999999-983------578870-58978787----------899973020--05148714750667762
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCC-CCCCCCCEEE--CCCC
Q ss_conf 541012332222333222211246210123221102234572131011003444455531011-1245453021--0344
Q gi|254780432|r 170 KNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYE-WANVKPDIMT--IAKG 246 (392)
Q Consensus 170 ~~~~~~~iAavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e-~~gi~PDi~~--~gK~ 246 (392)
T Consensus 132 ~~~--d~~slvviTgst-m-d~~vi~~d~~k~vI~~Ak~~~a~V~vDDA-sGA-RvR~L~gq~~al~lGADLvVTS~DKl 205 (346)
T TIGR03576 132 KKI--DGTSLVVITGST-M-DLKVVSEEDLKRVIKQAKSKEAIVLVDDA-SGA-RVRRLYGQPPALDLGADLVVTSTDKL 205 (346)
T ss_pred CCC--CCCCEEEEECCC-C-CCEECCHHHHHHHHHHHHHCCCEEEEECC-CCC-CHHHHCCCCCCCCCCCCEEEEEHHHC
T ss_conf 767--887189993787-7-73004578899999998746984998548-887-51665199986555642688400212
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 44443443210001112222233223453211110012334554320122210112100002688999988679707550
Q gi|254780432|r 247 MGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEV 326 (392)
Q Consensus 247 l~gG~P~sav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~v~~v 326 (392)
T Consensus 206 M~G-PR~GlLaG~~eLV~ki~~~~~~~GlEaq~Pi~aAmv~aLe~f~~~~l~~a~~r~~~~~l~~~~~l-----~-~-e~ 277 (346)
T TIGR03576 206 MDG-PRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL-----N-V-ER 277 (346)
T ss_pred CCC-CCCCEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC-----C-C-CC
T ss_conf 667-75411228889999999998752777784159999999970799999999999999887653035-----7-4-32
Q ss_pred CCCEEEE-EEEECCCHHHHHHHHHHCCEEEEEC-----CCCEEEEC
Q ss_conf 4640099-9872499899999999689899626-----89889955
Q gi|254780432|r 327 RGQGLLI-GLKTVFSPALLAAKFRDECLLTAPS-----SDNVVRIL 366 (392)
Q Consensus 327 RG~Gl~~-~ie~~~~~~~~~~~l~~~Gll~~~~-----~~~~irl~ 366 (392)
T Consensus 278 TptGf~ik~~~~e~~~~~~~~LL~~ygIiTIta~GmpgasktlR~d 323 (346)
T TIGR03576 278 TPTGFVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFD 323 (346)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEE
T ss_conf 7853798565688889999999997694898347788876326876