HHsearch alignment for GI: 254780432 and conserved domain: TIGR03588
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.23 E-value=8.1e-11 Score=91.20 Aligned_cols=303 Identities=15% Similarity=0.089 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999999997314506875781899999865201013331235655540356777665432001347860023435465
Q gi|254780432|r 52 ELVAILKSQSEKLWHVSNLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAF 131 (392)
Q Consensus 52 ~i~~a~~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~v~f~~SGseA~e~Aiklar~~~~~~g~t~r~~ii~~~~~y 131 (392)
T Consensus 11 ~e~~~v~~~l~s~~~~----~G~~v~~fE~~~~~~~g~k~~v~~~sgT~AL~lal~al~-------~~~gdeVivp~~tf 79 (380)
T TIGR03588 11 DDIDAVVEVLKSDFLT----QGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALG-------VGPGDEVWTTPITF 79 (380)
T ss_pred HHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC-------CCCCCEEEECCCCC
T ss_conf 9999999998479866----897699999999999785949997588999999999849-------99989999678530
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 654321234553211347999864333222100-2688754101----23322223332222112462101232211022
Q gi|254780432|r 132 HGRTLATISAGGKLQYLEGFGPKIEGFDQAKFC-DLQSLKNQIS----NDTAAILIEPIQGEGGVRKVPEEFLQQLRKIC 206 (392)
Q Consensus 132 HG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~-d~~~l~~~~~----~~iAavi~Epv~g~~G~~~~~~~~l~~l~~lc 206 (392)
T Consensus 80 ~a--------t~~ai~~~Ga~pvf~Dvd~~t~~id~~~l~~~it~~~~~ktkaIi~vh~~G~----~~--d-~~~i~~ia 144 (380)
T TIGR03588 80 VA--------TANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVDFAGK----SV--D-MQAIAALA 144 (380)
T ss_pred HH--------HHHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCE----EC--C-HHHHHHHH
T ss_conf 88--------6799998799689984410001489888777776436777259999489854----34--8-99999999
Q ss_pred CCCCCEEEECCCCCCCCCC--CCCCCCCCCCCCCCEEECC----CCCCCCCCCCCCCCCCC-CCCCCCCC----------
Q ss_conf 3457213101100344445--5531011124545302103----44444434432100011-12222233----------
Q gi|254780432|r 207 DDIDALLIFDEVQTGYGRT--GKLFAYEWANVKPDIMTIA----KGMGGGFPIGACLATNE-VAACMNQG---------- 269 (392)
Q Consensus 207 ~~~g~llI~DEV~tG~GRt--G~~f~~e~~gi~PDi~~~g----K~l~gG~P~sav~~~~~-i~~~~~~~---------- 269 (392)
T Consensus 145 ~~~~i~lIEDaA~a-~Ga~~~gk~~Gs~~---~gd~~~fSF~~~K~ittGe-GG~i~tnd~~l~~~~r~lr~~G~~~~~~ 219 (380)
T TIGR03588 145 KKHGLKIIEDASHA-LGAEYGGKPVGNCR---YADATVFSFHPVKIITTAE-GGAVTTNDEELAERMRLLRSHGITKDPL 219 (380)
T ss_pred HHCCCEEEEECCCH-HCCCCCCCCCCCCC---CCCEEEEECCCCCCCCCCC-CEEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf 98698899988001-15775787656644---3524677335555577788-5399969999999999999769677731
Q ss_pred ---------------CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHC-CCEEEEECCCEEEE
Q ss_conf ---------------22345321111001233455432012221011210000268899998867-97075504640099
Q gi|254780432|r 270 ---------------SHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRF-PNMFLEVRGQGLLI 333 (392)
Q Consensus 270 ---------------~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~-~~~v~~vRG~Gl~~ 333 (392)
T Consensus 220 ~~~~~~~~~~~y~~~~~G~N~rmseiqAAig~~qL~~ld--~~~~~R~~ia~~Y~~~L~~~~~~~~~~~~~~~~~~~~~y 297 (380)
T TIGR03588 220 LFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLD--RFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLY 297 (380)
T ss_pred HHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 001467887403663476665431241487688888899--999999999999999647899835674699983156899
Q ss_pred EEEEC----CCHHHHHHHHHHCCEEEE----ECC---------------------CCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 98724----998999999996898996----268---------------------9889955898688999999999999
Q gi|254780432|r 334 GLKTV----FSPALLAAKFRDECLLTA----PSS---------------------DNVVRILPPLTITAEEIHEGLERIE 384 (392)
Q Consensus 334 ~ie~~----~~~~~~~~~l~~~Gll~~----~~~---------------------~~~irl~Ppl~it~~eid~~i~~l~ 384 (392)
T Consensus 298 ~i~~~~~~~~~r~~l~~~L~~~gI~t~~~y~Plh~~p~~~~~~~~~~~p~ae~~~~~~l~LP~~~~Lt~~di~~I~~~Ik 377 (380)
T TIGR03588 298 PILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLR 377 (380)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEECCCHHCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99982667314999999999779985672304422998882788799879999984979897999989999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780432|r 385 RTA 387 (392)
Q Consensus 385 ~al 387 (392)
T Consensus 378 ~vL 380 (380)
T TIGR03588 378 KVL 380 (380)
T ss_pred HHC
T ss_conf 869