HHsearch alignment for GI: 254780432 and conserved domain: TIGR03588

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.23  E-value=8.1e-11  Score=91.20  Aligned_cols=303  Identities=15%  Similarity=0.089  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             99999999997314506875781899999865201013331235655540356777665432001347860023435465
Q gi|254780432|r   52 ELVAILKSQSEKLWHVSNLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAF  131 (392)
Q Consensus        52 ~i~~a~~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~v~f~~SGseA~e~Aiklar~~~~~~g~t~r~~ii~~~~~y  131 (392)
T Consensus        11 ~e~~~v~~~l~s~~~~----~G~~v~~fE~~~~~~~g~k~~v~~~sgT~AL~lal~al~-------~~~gdeVivp~~tf   79 (380)
T TIGR03588        11 DDIDAVVEVLKSDFLT----QGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALG-------VGPGDEVWTTPITF   79 (380)
T ss_pred             HHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC-------CCCCCEEEECCCCC
T ss_conf             9999999998479866----897699999999999785949997588999999999849-------99989999678530


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             654321234553211347999864333222100-2688754101----23322223332222112462101232211022
Q gi|254780432|r  132 HGRTLATISAGGKLQYLEGFGPKIEGFDQAKFC-DLQSLKNQIS----NDTAAILIEPIQGEGGVRKVPEEFLQQLRKIC  206 (392)
Q Consensus       132 HG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~-d~~~l~~~~~----~~iAavi~Epv~g~~G~~~~~~~~l~~l~~lc  206 (392)
T Consensus        80 ~a--------t~~ai~~~Ga~pvf~Dvd~~t~~id~~~l~~~it~~~~~ktkaIi~vh~~G~----~~--d-~~~i~~ia  144 (380)
T TIGR03588        80 VA--------TANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVDFAGK----SV--D-MQAIAALA  144 (380)
T ss_pred             HH--------HHHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCE----EC--C-HHHHHHHH
T ss_conf             88--------6799998799689984410001489888777776436777259999489854----34--8-99999999


Q ss_pred             CCCCCEEEECCCCCCCCCC--CCCCCCCCCCCCCCEEECC----CCCCCCCCCCCCCCCCC-CCCCCCCC----------
Q ss_conf             3457213101100344445--5531011124545302103----44444434432100011-12222233----------
Q gi|254780432|r  207 DDIDALLIFDEVQTGYGRT--GKLFAYEWANVKPDIMTIA----KGMGGGFPIGACLATNE-VAACMNQG----------  269 (392)
Q Consensus       207 ~~~g~llI~DEV~tG~GRt--G~~f~~e~~gi~PDi~~~g----K~l~gG~P~sav~~~~~-i~~~~~~~----------  269 (392)
T Consensus       145 ~~~~i~lIEDaA~a-~Ga~~~gk~~Gs~~---~gd~~~fSF~~~K~ittGe-GG~i~tnd~~l~~~~r~lr~~G~~~~~~  219 (380)
T TIGR03588       145 KKHGLKIIEDASHA-LGAEYGGKPVGNCR---YADATVFSFHPVKIITTAE-GGAVTTNDEELAERMRLLRSHGITKDPL  219 (380)
T ss_pred             HHCCCEEEEECCCH-HCCCCCCCCCCCCC---CCCEEEEECCCCCCCCCCC-CEEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf             98698899988001-15775787656644---3524677335555577788-5399969999999999999769677731


Q ss_pred             ---------------CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHC-CCEEEEECCCEEEE
Q ss_conf             ---------------22345321111001233455432012221011210000268899998867-97075504640099
Q gi|254780432|r  270 ---------------SHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRF-PNMFLEVRGQGLLI  333 (392)
Q Consensus       270 ---------------~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~-~~~v~~vRG~Gl~~  333 (392)
T Consensus       220 ~~~~~~~~~~~y~~~~~G~N~rmseiqAAig~~qL~~ld--~~~~~R~~ia~~Y~~~L~~~~~~~~~~~~~~~~~~~~~y  297 (380)
T TIGR03588       220 LFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLD--RFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLY  297 (380)
T ss_pred             HHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             001467887403663476665431241487688888899--999999999999999647899835674699983156899


Q ss_pred             EEEEC----CCHHHHHHHHHHCCEEEE----ECC---------------------CCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             98724----998999999996898996----268---------------------9889955898688999999999999
Q gi|254780432|r  334 GLKTV----FSPALLAAKFRDECLLTA----PSS---------------------DNVVRILPPLTITAEEIHEGLERIE  384 (392)
Q Consensus       334 ~ie~~----~~~~~~~~~l~~~Gll~~----~~~---------------------~~~irl~Ppl~it~~eid~~i~~l~  384 (392)
T Consensus       298 ~i~~~~~~~~~r~~l~~~L~~~gI~t~~~y~Plh~~p~~~~~~~~~~~p~ae~~~~~~l~LP~~~~Lt~~di~~I~~~Ik  377 (380)
T TIGR03588       298 PILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLR  377 (380)
T ss_pred             EEEECCCCCCCHHHHHHHHHHCCCCEEEECCCHHCCHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             99982667314999999999779985672304422998882788799879999984979897999989999999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780432|r  385 RTA  387 (392)
Q Consensus       385 ~al  387 (392)
T Consensus       378 ~vL  380 (380)
T TIGR03588       378 KVL  380 (380)
T ss_pred             HHC
T ss_conf             869