HHsearch alignment for GI: 254780432 and conserved domain: cd00615
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=97.68 E-value=0.00016 Score=50.09 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=107.6
Q ss_pred CCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 8757818999998652-010133312356555-40356777665432001347860023435465654321234553-21
Q gi|254780432|r 69 NLYQSTQQEIFANHLI-HSTFADRVFFTNSGA-ESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGG-KL 145 (392)
Q Consensus 69 ~~~~~~~~~~la~~L~-~~~~~~~v~f~~SGs-eA~e~Aiklar~~~~~~g~t~r~~ii~~~~~yHG~t~~a~s~s~-~~ 145 (392)
T Consensus 53 ~L~~p~g~I~eAq~laA~~~ga~~s~flvnGsT~g~~a~i~a~~-------~~gd-~vlv~RN~-HkSv~~gl~l~g~~P 123 (294)
T cd00615 53 DLLDPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC-------GPGD-KILIDRNC-HKSVINGLVLSGAVP 123 (294)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHC-------CCCC-EEEEECCC-HHHHHHHHHHCCCEE
T ss_conf 98898719999999999983999669982772699999999832-------8999-89982651-899999999869848
Q ss_pred CCCCCC-CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCC
Q ss_conf 134799-9864333222100268875410123322223332222112462101232211022345721310110034444
Q gi|254780432|r 146 QYLEGF-GPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGR 224 (392)
Q Consensus 146 ~~~~~~-~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GR 224 (392)
T Consensus 124 vyl~p~~~~~~gi~~~i~~~~~~~al~~~p~~kav~lt~PtY~--G~~~D----l~~i~~~~h~~~~~llVDEA------ 191 (294)
T cd00615 124 VYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYY--GICYN----LRKIVEEAHHRGLPVLVDEA------ 191 (294)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC--EEEEC----HHHHHHHHHHCCCEEEEECC------
T ss_conf 9960643555695389999999999985899658999779988--77668----99999998404997999775------
Q ss_pred CCCCCCCC-CCC-----CCCCEEECC--CCCCCCC-CCCCCCCCCCCCCC--CCC-CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 55531011-124-----545302103--4444443-44321000111222--223-322345321111001233455432
Q gi|254780432|r 225 TGKLFAYE-WAN-----VKPDIMTIA--KGMGGGF-PIGACLATNEVAAC--MNQ-GSHGSTYGGNVLAMVLGEKVLNII 292 (392)
Q Consensus 225 tG~~f~~e-~~g-----i~PDi~~~g--K~l~gG~-P~sav~~~~~i~~~--~~~-~~~~~T~~gnpl~~aaa~a~L~~l 292 (392)
T Consensus 192 hGah~~F~~~lp~~a~~~GAD~vv~S~HKtL~-altQ~s~lh~~~~~v~~~~l~~~l~~~qTTSPSYllmASlD~ar~~~ 270 (294)
T cd00615 192 HGAHFRFHPILPSSAAMAGADIVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMM 270 (294)
T ss_pred CHHHHHCCCCCCCCHHHCCCEEEEECHHHCCC-CCCHHHHEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 40344318778755666696399962321453-32225320237996899999999998838875899999999999999
Q ss_pred H--CCCCCCHHHHHCCHHHHHHH
Q ss_conf 0--12221011210000268899
Q gi|254780432|r 293 Q--SDGFLENVINIAKILFEGLT 313 (392)
Q Consensus 293 ~--~~~l~~~~~~~g~~l~~~L~ 313 (392)
T Consensus 271 ~~~G~~l~~~~l~~a~~~R~~i~ 293 (294)
T cd00615 271 ALEGKELVEELIELALYARQEIN 293 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999965