HHsearch alignment for GI: 254780432 and conserved domain: pfam05889
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=97.17 E-value=0.0054 Score=40.01 Aligned_cols=201 Identities=14% Similarity=0.239 Sum_probs=109.2
Q ss_pred CHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECC---CCCC--------CCCCCCCCC
Q ss_conf 00268875410-12332222333222211246210123221102234572131011---0034--------444555310
Q gi|254780432|r 163 FCDLQSLKNQI-SNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDE---VQTG--------YGRTGKLFA 230 (392)
Q Consensus 163 ~~d~~~l~~~~-~~~iAavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE---V~tG--------~GRtG~~f~ 230 (392)
T Consensus 141 ~~~ie~~i~~~g~~~ilcVlsTT----ScFaPR~pD~v~~IAklC~~~~IpHvVNnAYGlQ~~~~~~~i~~a~r~GRV-- 214 (389)
T pfam05889 141 VNDVETIIEEKGEEVILAVLSTT----SCFAPRSPDNVKEIAKICAEYDVPHLVNGAYGIQSEETIRLIAAAHECGRV-- 214 (389)
T ss_pred HHHHHHHHHHHCCCCEEEEEECC----CCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHCCCC--
T ss_conf 99999999983877668998446----656999966799999999974997478430366179999999999863882--
Q ss_pred CCCCCCCCCEEE--CCCCCCCCCCCCC-CCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH------C---CC
Q ss_conf 111245453021--0344444434432-1000--1112222233223453211110012334554320------1---22
Q gi|254780432|r 231 YEWANVKPDIMT--IAKGMGGGFPIGA-CLAT--NEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQ------S---DG 296 (392)
Q Consensus 231 ~e~~gi~PDi~~--~gK~l~gG~P~sa-v~~~--~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~------~---~~ 296 (392)
T Consensus 215 --------Da~VQStDKNfl--VPVGGaIIas~d~~~i~~i-----s~~YPGR----AS~sp~lDlfITLLslG~~gy~~ 275 (389)
T pfam05889 215 --------DAVVQSLDKNFI--VPVGGAIIAAFDESFIQEI-----SEEYPGR----ASARPSKDKLITLLSLGCKAYLA 275 (389)
T ss_pred --------EEEEEECCCCEE--EECCCEEEEECCHHHHHHH-----HHCCCCC----CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf --------189970686625--5348748970888999999-----8418997----77740799999999974888999
Q ss_pred CCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEEC-------CCHHHHHHHHHHCCEE---EEECCCC--E--
Q ss_conf 210112100002688999988679707550464009998724-------9989999999968989---9626898--8--
Q gi|254780432|r 297 FLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV-------FSPALLAAKFRDECLL---TAPSSDN--V-- 362 (392)
Q Consensus 297 l~~~~~~~g~~l~~~L~~l~~~~~~~v~~vRG~Gl~~~ie~~-------~~~~~~~~~l~~~Gll---~~~~~~~--~-- 362 (392)
T Consensus 276 Ll~eRke~~~~l~e~L~~~a~~~ge~lL~t~~N~IS~aitl~~l~~~~~~~~t~lgs~Lf~r~VsG~RvV~~~~~~~~~~ 355 (389)
T pfam05889 276 LMKEQKEMFPLLRELLKDLAEEVGEQLLDVPHNPISSAMTLETLDEISKKGRTDLGSELFSRRVTGARVVRSSDPFGTIE 355 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCEEE
T ss_conf 99999999999999999999982987513899951688873455666755499999999756787651665688853461
Q ss_pred --------EEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf --------99558986889999999999999999
Q gi|254780432|r 363 --------VRILPPLTITAEEIHEGLERIERTAI 388 (392)
Q Consensus 363 --------irl~Ppl~it~~eid~~i~~l~~al~ 388 (392)
T Consensus 356 ~~~y~~~Ylt~aaaiG~~~~dVd~f~~rL~k~l~ 389 (389)
T pfam05889 356 GCEYHGRYLNIASAIGMKDEDVDYVIERLDEILE 389 (389)
T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 6768836789998708868999999999998529