RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter asiaticus str. psy62] (392 letters) >gnl|CDD|34597 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]. Length = 404 Score = 490 bits (1264), Expect = e-139 Identities = 196/392 (50%), Positives = 260/392 (66%), Gaps = 7/392 (1%) Query: 3 KNDFLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSE 62 +L TY + + +G+GA+++ + G +LDFA+GIAVN+LGH HP LV LK Q+E Sbjct: 13 FMKYLMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAE 72 Query: 63 KLWHVSNLYQSTQQEIFANHLI-HSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTNK 121 KLWHVSNL+ + Q A L+ S FADRVFF NSGAE+ E A+K AR+Y G K Sbjct: 73 KLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKY---TGDPEK 129 Query: 122 FRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAIL 181 +I+ FE +FHGRTL +SA G+ +Y +GFGP + GF F D+++L+ I DTAA++ Sbjct: 130 SKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVI 189 Query: 182 IEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIM 241 +EPIQGEGGV P EFL+ LR++CD+ ALLI DEVQTG GRTGKLFAYE V+PDI+ Sbjct: 190 VEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDIL 249 Query: 242 TIAKGMGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENV 301 T+AK +GGGFPIGA LAT E+A+ G HGST+GGN LA + VL ++ +G LENV Sbjct: 250 TLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENV 309 Query: 302 INIAKILFEGLTAIKNRFPNMFLEVRGQGLLIG--LKTVFSPALLAAKFRDECLLTAPSS 359 + L + L +K R+P + EVRG+GL+IG LK + + R+E +L P+ Sbjct: 310 REKGEYLLQRLRELKRRYP-LVKEVRGRGLMIGIELKEPYRARDIVRALREEGVLVLPAG 368 Query: 360 DNVVRILPPLTITAEEIHEGLERIERTAIKLS 391 NV+R LPPL IT EEI E L+ +ER S Sbjct: 369 PNVIRFLPPLVITEEEIDEALDALERALAAAS 400 >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.. Length = 413 Score = 408 bits (1050), Expect = e-114 Identities = 163/398 (40%), Positives = 228/398 (57%), Gaps = 36/398 (9%) Query: 18 FEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQE 77 + +GA+L+ +G +LDF SGI V +LGH+HPE+V LK Q KL H S + + Sbjct: 22 IVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPA 81 Query: 78 I-FANHLIHST--FADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGR 134 + A L+ T D+VFF NSG E+VE A+K AR Y T + +I++FEGA+HGR Sbjct: 82 VELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAY------TGRKKIISFEGAYHGR 135 Query: 135 TLATISAGGKLQYLEGFGPKIEGFDQAKFC-----------DLQSLKNQI---SNDTAAI 180 TL +S G +Y GFGP + G + DL++L+ + + AA+ Sbjct: 136 TLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAV 195 Query: 181 LIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDI 240 ++EPIQGEGGV P +L+ LR++C LLI DEVQTG+GRTGK+FA+E V+PDI Sbjct: 196 IVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDI 255 Query: 241 MTIAKGMGGGFPIGACLATNEVAACMNQ--GSHGSTYGGNVLAMVLGEKVLNIIQSDGFL 298 +T+ KG+GGG P+GA L E+ G HG T+GGN LA VL +++ +G L Sbjct: 256 VTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLL 315 Query: 299 ENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGL------KTVFSPALLAAKFRDEC 352 EN + + L E L + + P + +VRG+GL+IG+ T LAAK Sbjct: 316 ENAAELGEYLRERLRELAEKHPLV-GDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAA 374 Query: 353 ----LLTAPSSDNVVRILPPLTITAEEIHEGLERIERT 386 LL PS NV+R+LPPL IT EEI EGL+ ++ Sbjct: 375 LERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEA 412 >gnl|CDD|143959 pfam00202, Aminotran_3, Aminotransferase class-III. Length = 338 Score = 347 bits (892), Expect = 4e-96 Identities = 147/337 (43%), Positives = 197/337 (58%), Gaps = 19/337 (5%) Query: 19 EKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVS-NLYQSTQQE 77 K KG WL+ +G +LDF SGIAV +LGH HP++V +K Q++KL H S + + Sbjct: 3 TKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPAL 62 Query: 78 IFANHLIHST--FADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRT 135 A L T DRVFF NSG+E+ E AIK AR+Y G T K +I+ F G FHGRT Sbjct: 63 QLAEKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHGRT 122 Query: 136 LATISAGGKLQYLEGFGPKIEGFDQAKFCDL--------------QSLKNQISNDTAAIL 181 L +S G Y +GFGP + G + DL + +K ++ AA++ Sbjct: 123 LGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEALRLIKAVHDDNIAAVI 182 Query: 182 IEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIM 241 +EPIQGEGGV P FL LR+IC LLI DEVQTG+GRTGKLFA E V PDIM Sbjct: 183 VEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGVTPDIM 242 Query: 242 TIAKGMGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENV 301 T+AK + GG P+ A LAT E+ + GSHG T+GGN LA VL+II+ + L+N Sbjct: 243 TLAKALTGGLPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDENLLQNA 302 Query: 302 INIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV 338 L +GL A++++ + +VRG+GL+I ++ V Sbjct: 303 QEKGDYLRKGLLALQDK--PVIGDVRGRGLMIAIEIV 337 >gnl|CDD|30509 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]. Length = 447 Score = 332 bits (852), Expect = 1e-91 Identities = 156/408 (38%), Positives = 220/408 (53%), Gaps = 48/408 (11%) Query: 18 FEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQE 77 + +GA+L+ +G +LDF SGIAV +LGH+HP +V +K Q KL H + Sbjct: 42 IVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPY 101 Query: 78 I-FANHLIHST---FADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHG 133 + A L +VFF NSGAE+VE AIK AR Y T + ++ F+GAFHG Sbjct: 102 VELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAY------TGRPGVIAFDGAFHG 155 Query: 134 RTLATISAGGKL-QYLEGFGPKIEGFDQAKFCD-----------------LQSLKNQI-- 173 RTL +S G Y GFGP G + + L+ ++ + Sbjct: 156 RTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFD 215 Query: 174 ----SNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLF 229 + AAI+IEPIQGEGG+ P+ FL+ LRK+C + LLI DEVQTG+GRTGK+F Sbjct: 216 LEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMF 275 Query: 230 AYEWANVKPDIMTIAKGMGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVL 289 A+E V+PDI+T+AK +GGG P+ A + E+ G HG T+GGN +A VL Sbjct: 276 AFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMDWPP-GGHGGTFGGNPVACAAALAVL 334 Query: 290 NIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFSPAL------ 343 ++I+ + LE + + L + L ++ + P + +VRG GL+IG++ V Sbjct: 335 DVIEEENLLERAAELGEYLRDRLEELQEKHP-LIGDVRGLGLMIGVELVKDRDTKEPDAE 393 Query: 344 LAAKFRDEC------LLTAPSSDNVVRILPPLTITAEEIHEGLERIER 385 LAAK LLT NV+RILPPLTI+ EE+ EGL+ +E Sbjct: 394 LAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEE 441 >gnl|CDD|36615 KOG1401, KOG1401, KOG1401, Acetylornithine aminotransferase [Amino acid transport and metabolism]. Length = 433 Score = 284 bits (729), Expect = 2e-77 Identities = 146/398 (36%), Positives = 205/398 (51%), Gaps = 17/398 (4%) Query: 6 FLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLW 65 + +TY + + E GKG+ LF +G ++DF S AV LGH++PE+ L Q++KL Sbjct: 30 RIVSTYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLG 89 Query: 66 HVSNLYQSTQQEIFANHLIHST---FADRVFFTNSGAESVECAIKTARRYHYMAGKTNKF 122 H SN Y + + L A+RVFF NSG E+ E A+K AR++ K Sbjct: 90 HSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKT 149 Query: 123 RIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQI---SNDTAA 179 + + FE ++HGRTL +S G +Y F P A++ D +L+ + AA Sbjct: 150 KFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAA 209 Query: 180 ILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPD 239 +++EPIQG GG+ EFL LRK CDD LLIFDEVQTG GR G +A E+ V PD Sbjct: 210 VIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPD 269 Query: 240 IMTIAKGMGGGFPIGACLATNEVAACMNQGS---HGSTYGGNVLAMVLGEKVLNIIQSDG 296 I T+AK +GGG PIGA ++VA ++ G HG T+ GN LA G KVL+ ++ Sbjct: 270 ITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPE 329 Query: 297 FLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFSPALLAAKFRDECLLTA 356 L+NV I K L + L + PN G+GL+IG + A R++ LL Sbjct: 330 TLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFADAAREQGLLIL 389 Query: 357 P----SSDNVVRILPPLTI----TAEEIHEGLERIERT 386 + VRI P + T E I L +E+ Sbjct: 390 TLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTILEKV 427 >gnl|CDD|36616 KOG1402, KOG1402, KOG1402, Ornithine aminotransferase [Amino acid transport and metabolism]. Length = 427 Score = 284 bits (728), Expect = 3e-77 Identities = 140/396 (35%), Positives = 220/396 (55%), Gaps = 13/396 (3%) Query: 3 KNDFLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSE 62 +N + + Y + F K KG+ ++ G +LDF S + + GH HP+++ L+ Q++ Sbjct: 30 ENKYGAHNYHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQAD 89 Query: 63 KLWHVSNLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGK--TN 120 KL S + + FA ++ D+V N+GAE+VE A K AR++ Y N Sbjct: 90 KLTLSSRAFYNDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKN 149 Query: 121 KFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEG-FDQAKFCDLQSLKNQISNDT-A 178 K +I++ E FHGRTL IS +GFGP + G D+ + D ++L+ + + A Sbjct: 150 KAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKSPNVA 209 Query: 179 AILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKP 238 A ++EPIQGE GV P +L+++R++C + LLI DEVQTG RTGKL A ++ NV+P Sbjct: 210 AFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRP 269 Query: 239 DIMTIAKGMGGGF-PIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGF 297 DI+ + K + GG P+ A LA +++ + G HGSTYGGN L + L +I + Sbjct: 270 DIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKL 329 Query: 298 LENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFSPALLAAKFRDECL---- 353 +E + +IL + L ++ +FP++ EVRG+GLL + S + D CL Sbjct: 330 VERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAW-DVCLALKE 388 Query: 354 ---LTAPSSDNVVRILPPLTITAEEIHEGLERIERT 386 L P+ N++R PPL I+ E++ EG+E IE+T Sbjct: 389 NGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKT 424 >gnl|CDD|30510 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]. Length = 449 Score = 276 bits (707), Expect = 9e-75 Identities = 129/420 (30%), Positives = 192/420 (45%), Gaps = 46/420 (10%) Query: 11 YDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNL 70 + +G +L +G +LD SG+ + GH PE+ +K Q +KL HV Sbjct: 23 PLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFG 82 Query: 71 YQSTQQEI-FANHLIHSTFA---DRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVT 126 + + I A L D VFFT+SG+E+VE A+K A +Y G+ + + ++ Sbjct: 83 GFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFIS 142 Query: 127 FEGAFHGRTLATISAGG-KLQYLEGFGPKIEGFDQAKFC-----------------DLQS 168 +HG TL +S GG + P + Sbjct: 143 RRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADE 202 Query: 169 LKNQI----SNDTAAILIEPI-QGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYG 223 L+ I AA ++EP+ G GG+ P +L+++R+ICD LLI DEV TG+G Sbjct: 203 LEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFG 262 Query: 224 RTGKLFAYEWANVKPDIMTIAKGMGGGF-PIGACLATNEVAACMNQG-----SHGSTYGG 277 RTGK+FA E A + PDI+ +AKG+ GG+ P+ A L ++ + + G HG TY G Sbjct: 263 RTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSG 322 Query: 278 NVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGL-- 335 N LA L+I++ + LE V I L GL A P +VRG GL+ + Sbjct: 323 NPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPL-VGDVRGLGLIGAIEL 381 Query: 336 ------KTVFS---PALLAAKFRDECLLTAPSSDNVVRILPPLTITAEEIHEGLERIERT 386 KT F A + A + LL P D + ++PPL IT EEI E ++ + Sbjct: 382 VADKATKTPFEARVGARVRAAALERGLLIRPLGDVIY-LMPPLIITREEIDELVDALREA 440 >gnl|CDD|36618 KOG1404, KOG1404, KOG1404, Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]. Length = 442 Score = 262 bits (670), Expect = 1e-70 Identities = 140/407 (34%), Positives = 209/407 (51%), Gaps = 47/407 (11%) Query: 10 TYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSN 69 +Y + + +G+G +L+ E G +LD GI SLGH HP++VA Q +KL+H ++ Sbjct: 28 SYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTS 87 Query: 70 LYQSTQQEIFANHLIHSTFAD---RVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVT 126 Y + A L+ S VFF NSG+E+ E A+K AR Y T I+ Sbjct: 88 GYLNPPIHDLAEALV-SKLPGDLKVVFFVNSGSEANELALKMARLY------TGNLDIIA 140 Query: 127 FEGAFHGRTLATISAGG---KLQYLEGFGPKI-------------EGFDQAKFCDLQS-- 168 ++HG TL T+ G Q G + G ++ + D + Sbjct: 141 RRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKE 200 Query: 169 LKNQISNDT----AAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGR 224 L++ I D AA + E IQG GG+ ++P +L+ K+ L I DEVQTG+GR Sbjct: 201 LEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGR 260 Query: 225 TGKLFAYEWANVKPDIMTIAKGMGGGFPIGACLATNEVAACMNQ-GSHGSTYGGNVLAMV 283 TG ++ +E V PDI+T+AKG+G GFP+GA + T E+A +NQ SH +TYGGN +A Sbjct: 261 TGHMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACA 320 Query: 284 LGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV----- 338 +G VL +I+ + EN + L E L A+K++ P + +VRG+GL++G++ V Sbjct: 321 VGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPII-GDVRGRGLMLGVELVSDKSE 379 Query: 339 -FSPA-LLAAKFRDEC----LLTAPSS--DNVVRILPPLTITAEEIH 377 PA A ++C +L NV RI PPL IT E+I Sbjct: 380 PKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDID 426 >gnl|CDD|30350 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]. Length = 432 Score = 168 bits (426), Expect = 3e-42 Identities = 103/327 (31%), Positives = 158/327 (48%), Gaps = 32/327 (9%) Query: 8 FNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHV 67 F + I E+GKGA+L +G ++D+ G LGH+HP +V ++ Q E+ Sbjct: 29 FKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSF 88 Query: 68 SNLYQSTQQEIFANHLIHSTF--ADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIV 125 T+ E+ L+ ++V F NSG E+ AI+ AR Y T + +I+ Sbjct: 89 GA---PTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAY------TGRDKII 139 Query: 126 TFEGAFHGRTLAT-ISAGGKLQYLEGFGPKIEGFDQAK------FCDLQSLK---NQISN 175 FEG +HG + + + AG L D AK + DL++L+ + + Sbjct: 140 KFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGD 199 Query: 176 DTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWAN 235 D AA+++EP+ G GV FL+ LR++ ++ ALLIFDEV TG+ R A + Sbjct: 200 DIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQGYYG 258 Query: 236 VKPDIMTIAKGMGGGFPIGACLATNEVAACMNQGS------HGSTYGGNVLAMVLGEKVL 289 V+PD+ T+ K +GGG PIGA E+ M Q + T GN LAM G L Sbjct: 259 VEPDLTTLGKIIGGGLPIGAFGGRAEI---MEQLAPLGPVYQAGTLSGNPLAMAAGLATL 315 Query: 290 NIIQS-DGFLENVINIAKILFEGLTAI 315 + + +G E + + + L EGL A Sbjct: 316 EELMTEEGVYERLDALGERLAEGLRAA 342 >gnl|CDD|36619 KOG1405, KOG1405, KOG1405, 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]. Length = 484 Score = 142 bits (360), Expect = 1e-34 Identities = 105/426 (24%), Positives = 171/426 (40%), Gaps = 64/426 (15%) Query: 18 FEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSN-LYQSTQQ 76 +EK G +L +G LD S I+ LG+++P LV + V+ + Sbjct: 62 YEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATMLVNRPALGNFPP 121 Query: 77 EIFANHLIHSTFA------DRVFFTNSGAESVECAIKTARRYHY---------------- 114 + FA L S + +V G+ + E A KTA ++ Sbjct: 122 KDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELES 181 Query: 115 ----MAGKTNKFRIVTFEGAFHGRTLATISAG--------------------GKLQY-LE 149 A +++F+GAFHGRT ++S + +Y L+ Sbjct: 182 CMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPFPRYKYPLD 241 Query: 150 GFGPKIEGFDQAKFCDLQSLKNQIS---NDTAAILIEPIQGEGGVRKVPEEFLQQLRKIC 206 + + DQ +++ L + AAI++EPIQ EGG +F ++LR I Sbjct: 242 ENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDIT 301 Query: 207 DDIDALLIFDEVQTGYGRTGKLFAYEWANVK--PDIMTIAKGM-GGGFPIGACLATNEVA 263 I DEVQTG G TGK +A+E N+ PD++T +K GGF NE Sbjct: 302 KKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGGFFHDEEFRPNEPY 361 Query: 264 ACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMF 323 N T+ G+ +L E+V+ I+ + L NV ++ K L +GL ++ ++P Sbjct: 362 RIFN------TWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKI 415 Query: 324 LEVRGQGLLIGLKTVFSPAL---LAAKFRDECLLTAPSSDNVVRILPPLTITAEEIHEGL 380 +RG+G I S ++ L R + D +R P L L Sbjct: 416 NNLRGRGTFIAWDCP-SGSIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFL 474 Query: 381 ERIERT 386 + ++ Sbjct: 475 DIFDKI 480 >gnl|CDD|36617 KOG1403, KOG1403, KOG1403, Predicted alanine-glyoxylate aminotransferase [General function prediction only]. Length = 452 Score = 140 bits (354), Expect = 6e-34 Identities = 99/420 (23%), Positives = 172/420 (40%), Gaps = 57/420 (13%) Query: 11 YDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNL 70 Y ++ + +G ++F E G +LD + +A +GH HPE+V Q + +N Sbjct: 26 YRSDPLKIVRAQGQYMFDEEGTRYLDCINNVA--HVGHCHPEVVRAGAKQMATI-STNNR 82 Query: 71 YQSTQQEIFANHLIHSTFA--DRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFE 128 + + A L ST FF NSG+E+ + A++ AR + T ++T + Sbjct: 83 FLHDELVQCARTLT-STLPELSVCFFVNSGSEANDLALRLARNF------TKHQDVITLD 135 Query: 129 GAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFC-------------DLQSLKNQISN 175 A+HG + + ++ +G G + C + ++ Sbjct: 136 HAYHGHLQSVMEVS-PYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYAD 194 Query: 176 DT--------------AAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTG 221 AA + E +Q GG P + Q + + I DEVQ G Sbjct: 195 PVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVG 254 Query: 222 YGRTGKLF-AYEWANVKPDIMTIAKGMGGGFPIGACLATNEVAACMNQGSHG--STYGGN 278 +GR G + A++ N PDI+T+ K MG G P+ A T E+A + +TYGGN Sbjct: 255 FGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGN 314 Query: 279 VLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV 338 ++ +G V+ + + + E+ + + L L +K + +VRG GL IG+ V Sbjct: 315 PVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHE-CIGDVRGVGLFIGIDLV 373 Query: 339 -----FSPA-------LLAAKFRDECLLTAPS-SDNVVRILPPLTITAEEIHEGLERIER 385 +P + K LL+A N+++I PP+ E E + ++ Sbjct: 374 KDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDE 433 >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).. Length = 170 Score = 62.8 bits (153), Expect = 1e-10 Identities = 29/175 (16%), Positives = 50/175 (28%), Gaps = 29/175 (16%) Query: 87 TFADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGK-- 144 D+ F SG + E A+ ++ R G Sbjct: 15 PGNDKAVFVPSGTGANEAALLALLGPGD--------EVIVDANGHGSRYWVAAELAGAKP 66 Query: 145 --LQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQL 202 + + ++ + + + A I+I P GGV +E + Sbjct: 67 VPVPVDDAGYGGLDV--------AILEELKAKPNVALIVITPNTTSGGVLVPLKE----I 114 Query: 203 RKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIA--KGMGGGFPIGA 255 RKI + LL+ D G D++T + K + GG G Sbjct: 115 RKIAKEYGILLLVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNL-GGEGGGV 166 >gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]. Length = 393 Score = 43.8 bits (103), Expect = 8e-05 Identities = 63/272 (23%), Positives = 100/272 (36%), Gaps = 36/272 (13%) Query: 137 ATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAI-LIEPIQGEGGVRKVP 195 A AGGK + + GF DL+ L+ I+ T AI L P G V Sbjct: 129 AVKLAGGKPVPVP-LDEEENGF----KPDLEDLEAAITPKTKAIILNSPNNPTGAV--YS 181 Query: 196 EEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLF--AYEWANVKPDIMTI---AKGMG-G 249 +E L+ + ++ + D ++I DE+ G E A + +TI +K G Sbjct: 182 KEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMT 241 Query: 250 GFPIGACLATN-EVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINI---- 304 G+ IG + E+ A + + T A LN QSD +E + Sbjct: 242 GWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRER 301 Query: 305 AKILFEGLTAIKNRFPNMFLEVRGQG---LLIGLKTVFSPALLAAKFRDEC-LLTAPSS- 359 +L E L I + + +G L + + A K +E + P S Sbjct: 302 RDLLVEALNEI----GGLSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSG 357 Query: 360 ------DNVVRILPPLTITAEEIHEGLERIER 385 + VR+ L + E + E L R+ R Sbjct: 358 FGEPPGEGYVRL--SLATSEETLEEALRRLAR 387 >gnl|CDD|31301 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]. Length = 386 Score = 37.8 bits (88), Expect = 0.005 Identities = 63/274 (22%), Positives = 98/274 (35%), Gaps = 48/274 (17%) Query: 90 DRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLE 149 + + FT+ ES AIK A + A K E H L T +YLE Sbjct: 62 EEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE---HPAVLNT------CRYLE 112 Query: 150 GFGPKIE--GFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICD 207 G ++ D DL+ L+ + DT + I E G + + ++ +IC Sbjct: 113 RQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTI----QPIAEIGEICK 168 Query: 208 DIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTI-AKGMGGGFPIGACLATNEV--AA 264 + L D VQ GK+ + + D+++ A GG IGA V Sbjct: 169 ERGILFHVDAVQA----VGKI-PIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRLEP 223 Query: 265 CMNQGSH------GSTYGGNVLAMVLGEKVLNIIQS--DGFLENVINIAKILFEGLTAI- 315 ++ G G+ NV +V K I + + + L +GL I Sbjct: 224 LIHGGGQERGLRSGTE---NVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEII 280 Query: 316 ---------KNRFPNM----FLEVRGQGLLIGLK 336 + R PN+ F V G+ LL+ L Sbjct: 281 PDVYLNGDDEPRLPNILNFSFPGVEGESLLLALD 314 >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.. Length = 350 Score = 37.3 bits (87), Expect = 0.007 Identities = 56/328 (17%), Positives = 104/328 (31%), Gaps = 67/328 (20%) Query: 89 ADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYL 148 + + TN E++ ++ G ++ + + G A AG ++ + Sbjct: 59 PEEIVVTNGAQEALSLLLRALLN----PGDE----VLVPDPTYPGYEAAARLAGAEVVPV 110 Query: 149 EGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQ---GEGGVRKVPEEFLQQLRKI 205 EG DL+ L+ + T + + G + EE L++L ++ Sbjct: 111 P---LDEEGGFLL---DLELLEAAKTPKTKLLYLNNPNNPTG----AVLSEEELEELAEL 160 Query: 206 CDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPD-----------IMTIAKGMG-GGFPI 253 L+I DE Y Y+ + + +K G G I Sbjct: 161 AKKHGILIISDEA---YAE----LVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRI 213 Query: 254 GACLATNEVAACMNQGSHGSTYGG-NVLAMVLGEKVLNIIQSDGFLENVINIAK----IL 308 G +A E + T G + L+ L+ + LE + + L Sbjct: 214 GYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALD--DGEEHLEELRERYRRRRDAL 271 Query: 309 FEGLTAIKNRFPNMFLEVRGQG---LLIGLKTVFSPALLAAKFRDECLLTAPSS------ 359 E L + + V+ G L + L L + ++ P S Sbjct: 272 LEALKELGP-----LVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGG 326 Query: 360 DNVVRILPPLTITA--EEIHEGLERIER 385 + VR+ + EE+ E LER+ Sbjct: 327 EGFVRL----SFATPEEELEEALERLAE 350 >gnl|CDD|31229 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]. Length = 978 Score = 36.4 bits (84), Expect = 0.013 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 22/170 (12%) Query: 22 KGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQEIFAN 81 GA NG+ + F ++ N + E+ L++ +K++ +NL + I Sbjct: 686 AGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAI---IGDI 742 Query: 82 HLIHSTFADRVF-FTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATIS 140 I + + F E + + ++ I+ A++ A Sbjct: 743 DKILDLLENPLLKFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPSPVAYN----ALAF 798 Query: 141 AGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGG 190 + G L Y LQ L + + L I+ +GG Sbjct: 799 SIGGLPYTHPDYAA-----------LQVLSEYLGSG---YLWNKIREKGG 834 >gnl|CDD|31207 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]. Length = 496 Score = 32.2 bits (73), Expect = 0.28 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 12/121 (9%) Query: 96 NSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKI 155 N+GA+ + R YH G+ ++ I + HG A+ + G F + Sbjct: 132 NAGAQGEYAGLLAIRAYHESRGEGHR-NICLIPDSAHGTNPASAAMAG-------FKVVV 183 Query: 156 EGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIF 215 D+ DL L+ + ++ AA++I G V EE ++++ +I + + + Sbjct: 184 VKCDENGNVDLDDLRAKAEDNLAALMITNPSTLG----VFEEDIREICEIVHEAGGQVYY 239 Query: 216 D 216 D Sbjct: 240 D 240 >gnl|CDD|35478 KOG0257, KOG0257, KOG0257, Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]. Length = 420 Score = 31.8 bits (72), Expect = 0.29 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Query: 124 IVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI- 182 ++ FE F + AGG ++ + D + L+++I+ T AI++ Sbjct: 120 VIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILN 179 Query: 183 EPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEV 218 P G V E L+++ ++C L+I DEV Sbjct: 180 TPHNPTGKV--FSREELERIAELCKKHGLLVISDEV 213 >gnl|CDD|133410 cd04783, HTH_MerR1, Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Length = 126 Score = 30.3 bits (69), Expect = 0.96 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 9/47 (19%) Query: 180 ILIEPIQGEGGVRKVPEEFLQQLRKI---------CDDIDALLIFDE 217 +L EP + EGG R+ PEE + +LR I D+I LL D+ Sbjct: 25 LLPEPPRPEGGYRRYPEETVTRLRFIKRAQELGFTLDEIAELLELDD 71 >gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.. Length = 398 Score = 30.3 bits (69), Expect = 0.98 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 11/87 (12%) Query: 132 HGRTLATISAGGKLQYLEGFGPKIEGFDQAKF--CDLQSLKNQISNDTAAILIEPIQGEG 189 H A E G ++ + DL++LK ++S + AA++++ G Sbjct: 118 HPTNPAVART-----RGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPNTLG 172 Query: 190 GVRKVPEEFLQQLRKICDDIDALLIFD 216 E+ ++++ I AL+ D Sbjct: 173 VF----EDLIKEIADIAHSAGALVYVD 195 >gnl|CDD|32191 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]. Length = 342 Score = 30.2 bits (68), Expect = 1.0 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 19/94 (20%) Query: 177 TAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANV 236 T ++E EGG P + L+ + +C + L D G A + Sbjct: 131 TPLAVLENTATEGG-TVYPLDELEAISAVCKEHGLPLHMD---------GARLANALVAL 180 Query: 237 KPDIMTIAKGM---------GGGFPIGACLATNE 261 + TI + GGG P+GA + N Sbjct: 181 GVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNR 214 >gnl|CDD|31642 COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]. Length = 391 Score = 30.2 bits (68), Expect = 1.1 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 15/90 (16%) Query: 158 FDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDE 217 DQ + LK S ++EP+ G G + VPE+ L ++C Sbjct: 178 IDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEK----LEELCRPA-------- 225 Query: 218 VQTGYGRTGKLFAYEWANVKPDIMTIAKGM 247 R+ +A + P++ T+ GM Sbjct: 226 ---SPKRSPAEWALRYLLSHPEVTTVLSGM 252 >gnl|CDD|144709 pfam01212, Beta_elim_lyase, Beta-eliminating lyase. Length = 288 Score = 29.9 bits (68), Expect = 1.3 Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 34/184 (18%) Query: 92 VFFTNSG--AESVECAIKTARRYHYMAGKT-NKFR-----IVTFEGAFHGRTLATISAGG 143 F SG A + R + G+ + + GA L + G Sbjct: 50 ALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELGGA-QPVPL-PGAEAG 107 Query: 144 KLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLR 203 KL LE I F T I +E G + V E L+++R Sbjct: 108 KLD-LEDLEAAIRPVGDIHFPP-----------TGLISLENTHNSAGGQVVSLEELREIR 155 Query: 204 KICDDIDALLIFD-----EVQTGYGRTGK-LFAYEWANVKPDIMTIAKGMGGGFPIGACL 257 I + L D G K + +Y D ++++ G G P+G+ L Sbjct: 156 AIAREHGIPLHLDGARLANAAVALGVIVKEITSYA------DSVSMSLSKGLGAPVGSVL 209 Query: 258 ATNE 261 A ++ Sbjct: 210 AGSD 213 >gnl|CDD|34178 COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 474 Score = 28.7 bits (64), Expect = 2.9 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 9/101 (8%) Query: 13 QSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQ 72 + +R + G +L + P I V + GHS P + +++ Y Sbjct: 129 ATSVRQDTNAGGYLVTTADGPSEIAD--IIVLATGHSAPPADPAARDLKGSPRLIADPYP 186 Query: 73 STQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYH 113 AN L DRV SG S++ + RR H Sbjct: 187 -------ANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGH 220 >gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324 Score = 28.3 bits (64), Expect = 3.3 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%) Query: 196 EEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLF 229 +FL+ L+++ ++A + FD V G G TG++ Sbjct: 198 PDFLEDLKELIAKLNATIFFDAV--GGGLTGQIL 229 >gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]. Length = 388 Score = 28.3 bits (63), Expect = 3.8 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 14/86 (16%) Query: 199 LQQLRKICDDIDALLIFDEVQ-TG-YGRTGKLFAYEWANVKPDIMTI-----AKGMG--G 249 L +L ++ + ALL DE G G G+ A E ++P+ + I K +G G Sbjct: 190 LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLA-EHFGLEPEEVDIIVGTLGKALGSSG 248 Query: 250 GFPIGACLATNEVAACMNQGSHGSTY 275 G+ + + + + + Sbjct: 249 GY----IAGSAALIDYLRNRARPFIF 270 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.138 0.405 Gapped Lambda K H 0.267 0.0851 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,665,801 Number of extensions: 248610 Number of successful extensions: 670 Number of sequences better than 10.0: 1 Number of HSP's gapped: 621 Number of HSP's successfully gapped: 37 Length of query: 392 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 296 Effective length of database: 4,189,273 Effective search space: 1240024808 Effective search space used: 1240024808 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (25.9 bits)