HHsearch alignment for GI: 254780434 and conserved domain: COG0159
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism].
Probab=98.05 E-value=0.00037 Score=47.84 Aligned_cols=204 Identities=22% Similarity=0.278 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH---HCCCCCCEEE
Q ss_conf 8867798887403675241020013687899886268842555410000247777788999876410---0012100011
Q gi|254780434|r 65 DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ---PTSPIGINLG 141 (362)
Q Consensus 65 dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~---~~~pi~vsI~ 141 (362)
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvAD--GP~Iq-~A~~rAL~~-----g~t~~~~lel~~~~r~~~~~~Pivlm~Y 102 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVAD--GPTIQ-AAHLRALAA-----GVTLEDTLELVEEIRAKGVKVPIVLMTY 102 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHC-----CCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999999999986798889966888886766--88999-989999977-----9988999999999986189998899870
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 04542467887765554206755269830333653221100002343211112244455655312688517865057777
Q gi|254780434|r 142 ANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLS 221 (362)
Q Consensus 142 ~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~ 221 (362)
T Consensus 103 ~Npi~~~Gie~F~~~~~~~G--vdGliv-------pDLP----~ee~~~~~~~~~--------~~gi-~~I-~lvaPtt~ 159 (265)
T COG0159 103 YNPIFNYGIEKFLRRAKEAG--VDGLLV-------PDLP----PEESDELLKAAE--------KHGI-DPI-FLVAPTTP 159 (265)
T ss_pred CCHHHHHHHHHHHHHHHHCC--CCEEEE-------CCCC----HHHHHHHHHHHH--------HCCC-CEE-EEECCCCC
T ss_conf 11887735999999999759--987985-------7898----667778999999--------7698-679-88699999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC-CCCCHH
Q ss_conf 4888999998764498299980665553234577544632211356454246899999997408974899967-889999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG-GISSTK 300 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G-GI~s~~ 300 (362)
T Consensus 160 ~~rl~~i~~~a-----~GFiY~vs---~~GvT---------G~~~~-~~~~~~~~v~~vr~~~--~~Pv-~vGFGIs~~e 218 (265)
T COG0159 160 DERLKKIAEAA-----SGFIYYVS---RMGVT---------GARNP-VSADVKELVKRVRKYT--DVPV-LVGFGISSPE 218 (265)
T ss_pred HHHHHHHHHHC-----CCCEEEEE---CCCCC---------CCCCC-CCHHHHHHHHHHHHHC--CCCE-EEECCCCCHH
T ss_conf 89999999747-----98589996---66666---------77765-3046999999999744--8973-8744869999
Q ss_pred HHHHHHHCCCCEEEECHHHHC
Q ss_conf 999999839997545278770
Q gi|254780434|r 301 DALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 301 Da~e~l~aGAs~VQi~Tali~ 321 (362)
T Consensus 219 ~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 219 QAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred HHHHHHHH-CCEEEECHHHHH
T ss_conf 99999976-885797399999