HHsearch alignment for GI: 254780434 and conserved domain: COG0329
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].
Probab=97.02 E-value=0.0099 Score=38.21 Aligned_cols=192 Identities=20% Similarity=0.261 Sum_probs=86.7
Q ss_pred CCCC--HHHHHHHHHCCCC-EEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH-HHCCCCCCE
Q ss_conf 8886--7798887403675-24102001368789988626884255541000024777778899987641-000121000
Q gi|254780434|r 64 YDKN--AEVPIELLKLGFG-FVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI-QPTSPIGIN 139 (362)
Q Consensus 64 ~dk~--~~~~~~l~~~G~G-~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~-~~~~pi~vs 139 (362)
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~Gt-tGE~------~~---L------------s~eEr~~v~~~~v~~~~grvpviaG 79 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGT-TGES------PT---L------------TLEERKEVLEAVVEAVGGRVPVIAG 79 (299)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-CCCC------HH---C------------CHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 39999999999999849988997986-6572------21---6------------9999999999999996897778986
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-
Q ss_conf 1104542467887765554206755269830333653221100002343211112244455655312688517865057-
Q gi|254780434|r 140 LGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP- 218 (362)
Q Consensus 140 I~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP- 218 (362)
T Consensus 80 ~g~~~-t~eai-~lak~a~~~G--ad~il~---v~PyY~k---~~~~gl~~hf~~ia~a---------~~lPvilYN~P~ 140 (299)
T COG0329 80 VGSNS-TAEAI-ELAKHAEKLG--ADGILV---VPPYYNK---PSQEGLYAHFKAIAEA---------VDLPVILYNIPS 140 (299)
T ss_pred CCCCC-HHHHH-HHHHHHHHCC--CCEEEE---ECCCCCC---CCHHHHHHHHHHHHHH---------CCCCEEEEECCC
T ss_conf 28777-99999-9999999709--999998---4897889---8979999999999985---------189989997875
Q ss_pred ----CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEE
Q ss_conf ----77748889999987644982999806655532345775446322113564542468999999974089-7489996
Q gi|254780434|r 219 ----DLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGP-KIAIIGT 293 (362)
Q Consensus 219 ----d~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~-~i~IIg~ 293 (362)
T Consensus 141 ~tg~~l~~e~i~~la~---~~nivgiKd--~---------------~----g------d~~~~~~~~~~~~~~~f-~v~~ 189 (299)
T COG0329 141 RTGVDLSPETIARLAE---HPNIVGVKD--S---------------S----G------DLDRLEEIIAALGDRDF-IVLS 189 (299)
T ss_pred CCCCCCCHHHHHHHHC---CCCEEEEEE--C---------------C----C------CHHHHHHHHHHCCCCCE-EEEE
T ss_conf 2489999999999827---898899984--7---------------8----8------99999999986487662-8982
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 788999999999983999754527877069789999999
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
T Consensus 190 G---~d~~~~~~~~~G~~G~is~~~N~~--p~~~~~l~~ 223 (299)
T COG0329 190 G---DDELALPALLLGADGVISVTANVA--PELAVELYR 223 (299)
T ss_pred C---CHHHHHHHHHCCCCEEEECCCHHC--HHHHHHHHH
T ss_conf 6---658888998677985884100127--999999999