HHsearch alignment for GI: 254780434 and conserved domain: COG1954

>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].
Probab=91.85  E-value=0.26  Score=28.67  Aligned_cols=66  Identities=21%  Similarity=0.298  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf             48889999987644982999806655532345775446322113564542468999999974089748999678899999
Q gi|254780434|r  222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD  301 (362)
Q Consensus       222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D  301 (362)
T Consensus       107 S~Al~~~~~~i~~~~pD~iEv---------------------LPG--v~P---kvi~~i~~~t--~~piIAGGLi~t~Ee  158 (181)
T COG1954         107 SIALEKGIKQIEKSEPDFIEV---------------------LPG--VMP---KVIKEITEKT--HIPIIAGGLIETEEE  158 (181)
T ss_pred             HHHHHHHHHHHHHCCCCEEEE---------------------CCC--CCH---HHHHHHHHHC--CCCEEECCCCCCHHH
T ss_conf             788998999998709987988---------------------675--439---9999998755--897773243053999


Q ss_pred             HHHHHHCCCCEEEE
Q ss_conf             99999839997545
Q gi|254780434|r  302 ALDKIMAGANLIQL  315 (362)
Q Consensus       302 a~e~l~aGAs~VQi  315 (362)
T Consensus       159 v~~Al~aGA~avST  172 (181)
T COG1954         159 VREALKAGAVAVST  172 (181)
T ss_pred             HHHHHHHCCEEEEE
T ss_conf             99999717679851