HHsearch alignment for GI: 254780434 and conserved domain: COG1954
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].
Probab=91.85 E-value=0.26 Score=28.67 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 48889999987644982999806655532345775446322113564542468999999974089748999678899999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD 301 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D 301 (362)
T Consensus 107 S~Al~~~~~~i~~~~pD~iEv---------------------LPG--v~P---kvi~~i~~~t--~~piIAGGLi~t~Ee 158 (181)
T COG1954 107 SIALEKGIKQIEKSEPDFIEV---------------------LPG--VMP---KVIKEITEKT--HIPIIAGGLIETEEE 158 (181)
T ss_pred HHHHHHHHHHHHHCCCCEEEE---------------------CCC--CCH---HHHHHHHHHC--CCCEEECCCCCCHHH
T ss_conf 788998999998709987988---------------------675--439---9999998755--897773243053999
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99999839997545
Q gi|254780434|r 302 ALDKIMAGANLIQL 315 (362)
Q Consensus 302 a~e~l~aGAs~VQi 315 (362)
T Consensus 159 v~~Al~aGA~avST 172 (181)
T COG1954 159 VREALKAGAVAVST 172 (181)
T ss_pred HHHHHHHCCEEEEE
T ss_conf 99999717679851