HHsearch alignment for GI: 254780434 and conserved domain: COG2876
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism].
Probab=96.02 E-value=0.14 Score=30.39 Aligned_cols=227 Identities=18% Similarity=0.207 Sum_probs=122.7
Q ss_pred CEEEECCEECCCC--EEECCCCC--CCHHHHHHHH----HCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCC
Q ss_conf 1168887335997--48534688--8677988874----03675241020013687899886268842555410000247
Q gi|254780434|r 45 LNTKVAGISLSNP--LGMAAGYD--KNAEVPIELL----KLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFN 116 (362)
Q Consensus 45 L~~~~~Gl~~~nP--iglAaG~d--k~~~~~~~l~----~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~ 116 (362)
T Consensus 31 tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGga--fKPRT-S----------------PYsFQ 91 (286)
T COG2876 31 TIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALRGGA--FKPRT-S----------------PYSFQ 91 (286)
T ss_pred EEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHCCCCC--CCCCC-C----------------CCCCC
T ss_conf 13204552005886138995474247799999999999873622313776--78889-9----------------53336
Q ss_pred CCCHHHHHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 777788999876410--001210001104542467887765554206755269830333653221100002343211112
Q gi|254780434|r 117 NAGYHTVFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIH 194 (362)
Q Consensus 117 N~G~~~~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~ 194 (362)
T Consensus 92 Glge~g-L~~l~~a~~~~Gl~vvtEvm~-------~~~----~e~~~~y~Dilqv--------GARNMQNF~LLke~--- 148 (286)
T COG2876 92 GLGEEG-LKLLKRAADETGLPVVTEVMD-------VRD----VEAAAEYADILQV--------GARNMQNFALLKEV--- 148 (286)
T ss_pred CCCHHH-HHHHHHHHHHCCCEEEEEECC-------HHH----HHHHHHHHHHHHH--------CCCCHHHHHHHHHH---
T ss_conf 657788-999999888729905889548-------989----9999866169886--------33200516999982---
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 24445565531268851786505777748889999987644982999806655532345775446322113564542468
Q gi|254780434|r 195 VMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKST 274 (362)
Q Consensus 195 v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al 274 (362)
T Consensus 149 -----------G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCER-----GIRtfe~~T-------R--ntLDi 203 (286)
T COG2876 149 -----------GRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCER-----GIRTFEKAT-------R--NTLDI 203 (286)
T ss_pred -----------CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC-----CCCCCCCCC-------C--CEECH
T ss_conf -----------3559976972474124999999999999679995799714-----433455566-------6--42236
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHH------HHHHHHCCCCEEEEC------HHH----HCCCHHHHHHHHHHHHHHH
Q ss_conf 999999974089748999678899999------999998399975452------787----7069789999999999999
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKD------ALDKIMAGANLIQLY------SAM----IYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~D------a~e~l~aGAs~VQi~------Tal----i~~Gp~~~~~I~~~L~~~l 338 (362)
T Consensus 204 ~aV~~~kq~T--HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~ 281 (286)
T COG2876 204 SAVPILKQET--HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALA 281 (286)
T ss_pred HHHHHHHHHC--CCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8888887615--78779878776553135788899998616773699964795434576000179999999999998776
Q ss_pred HH
Q ss_conf 98
Q gi|254780434|r 339 NK 340 (362)
Q Consensus 339 ~~ 340 (362)
T Consensus 282 ~~ 283 (286)
T COG2876 282 DA 283 (286)
T ss_pred HH
T ss_conf 54