HHsearch alignment for GI: 254780434 and conserved domain: PRK07259

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed.
Probab=100.00  E-value=0  Score=564.71  Aligned_cols=291  Identities=25%  Similarity=0.351  Sum_probs=257.3

Q ss_pred             CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHH
Q ss_conf             31168887335997485346-88867798887403675241020013687899886268842555410000247777788
Q gi|254780434|r   44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHT  122 (362)
Q Consensus        44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~  122 (362)
T Consensus         1 rL~~~~~Gl~f~nPi~lAAG~~~~~~~~~~~~~~~G~G~v~~kTit~~p~~Gnp~Pr~~~~~--~~~iN~~G~~n~G~~~   78 (301)
T PRK07259          1 RLSVNLPGLKLKNPVMPASGTFGFGGEYAKFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNAVGLQNPGVDA   78 (301)
T ss_pred             CCEEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCHHH
T ss_conf             96289799876997487766899999999999986975899172160402699998589666--2100346678835999


Q ss_pred             HHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCC--CCCCCCHHHHHHHHHHHH
Q ss_conf             999876410--001210001104542467887765554206--75526983033365322--110000234321111224
Q gi|254780434|r  123 VFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFF--TIASYFTINISSPNTPG--LRSLQKKKNLERLLIHVM  196 (362)
Q Consensus       123 ~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~--~~aD~iEiNiSCPNt~g--~~~~~~~~~l~~~l~~v~  196 (362)
T Consensus        79 ~~~~~~~~~~~~~~pvi~si~~~-----~~~d~~~~~~~l~~~~~ad~ielNiScPn~~~~g~~~~~~~~~l~~i~~~v~  153 (301)
T PRK07259         79 FIEEELPWLEEFDTPIIANIAGS-----TPEEYVEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK  153 (301)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCC-----CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999976420699879973767-----7689999999864556888899965478888526660879999999999998


Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             4455655312688517865057777488899999876449829998066555323---4577544632211356454246
Q gi|254780434|r  197 QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG---VQCSDNHEQDGGLSGSPLFLKS  273 (362)
Q Consensus       197 ~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~---~~~~~~~~~~GGlSG~~i~~~a  273 (362)
T Consensus       154 ~---------~~~~Pv~vKlsP~~~--~i~~ia~~~~~~gadgvv~~Nt~~~~~id~~~~~p~~~~~~GGlSG~~l~~~a  222 (301)
T PRK07259        154 S---------VSKVPVIVKLTPNVT--DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIA  222 (301)
T ss_pred             H---------HCCCCEEEEECCCHH--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             7---------348977998078712--19999999997599889995677676532356774335788863473351899


Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf             89999999740897489996788999999999983999754527877069789999999999999983899778961697
Q gi|254780434|r  274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSY  353 (362)
Q Consensus       274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~  353 (362)
T Consensus       223 l~~v~~~~~~~--~ipIig~GGI~s~~da~e~i~aGAs~VQv~Ta-v~~Gp~~~~~i~~~L~~~l~~~G~~si~e~~G~a  299 (301)
T PRK07259        223 LRMVYQVAKAV--DIPIIGMGGISTAEDAIEFMMAGASAVQVGTA-NFIDPYAFPEIIEGLEAYLDEEGIKSIEEIIGIA  299 (301)
T ss_pred             HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCHH
T ss_conf             99999998516--98889767979999999999839879872123-3149069999999999999984999899971813


Q ss_pred             CH
Q ss_conf             52
Q gi|254780434|r  354 TE  355 (362)
Q Consensus       354 ~~  355 (362)
T Consensus       300 hr  301 (301)
T PRK07259        300 HK  301 (301)
T ss_pred             CC
T ss_conf             29