HHsearch alignment for GI: 254780434 and conserved domain: PRK07259
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed.
Probab=100.00 E-value=0 Score=564.71 Aligned_cols=291 Identities=25% Similarity=0.351 Sum_probs=257.3
Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHH
Q ss_conf 31168887335997485346-88867798887403675241020013687899886268842555410000247777788
Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHT 122 (362)
Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~ 122 (362)
T Consensus 1 rL~~~~~Gl~f~nPi~lAAG~~~~~~~~~~~~~~~G~G~v~~kTit~~p~~Gnp~Pr~~~~~--~~~iN~~G~~n~G~~~ 78 (301)
T PRK07259 1 RLSVNLPGLKLKNPVMPASGTFGFGGEYAKFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNAVGLQNPGVDA 78 (301)
T ss_pred CCEEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCHHH
T ss_conf 96289799876997487766899999999999986975899172160402699998589666--2100346678835999
Q ss_pred HHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCC--CCCCCCHHHHHHHHHHHH
Q ss_conf 999876410--001210001104542467887765554206--75526983033365322--110000234321111224
Q gi|254780434|r 123 VFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFF--TIASYFTINISSPNTPG--LRSLQKKKNLERLLIHVM 196 (362)
Q Consensus 123 ~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~--~~aD~iEiNiSCPNt~g--~~~~~~~~~l~~~l~~v~ 196 (362)
T Consensus 79 ~~~~~~~~~~~~~~pvi~si~~~-----~~~d~~~~~~~l~~~~~ad~ielNiScPn~~~~g~~~~~~~~~l~~i~~~v~ 153 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANIAGS-----TPEEYVEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred HHHHHHHHHHHCCCCEEEECCCC-----CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999976420699879973767-----7689999999864556888899965478888526660879999999999998
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 4455655312688517865057777488899999876449829998066555323---4577544632211356454246
Q gi|254780434|r 197 QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG---VQCSDNHEQDGGLSGSPLFLKS 273 (362)
Q Consensus 197 ~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~---~~~~~~~~~~GGlSG~~i~~~a 273 (362)
T Consensus 154 ~---------~~~~Pv~vKlsP~~~--~i~~ia~~~~~~gadgvv~~Nt~~~~~id~~~~~p~~~~~~GGlSG~~l~~~a 222 (301)
T PRK07259 154 S---------VSKVPVIVKLTPNVT--DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIA 222 (301)
T ss_pred H---------HCCCCEEEEECCCHH--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 7---------348977998078712--19999999997599889995677676532356774335788863473351899
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 89999999740897489996788999999999983999754527877069789999999999999983899778961697
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362)
T Consensus 223 l~~v~~~~~~~--~ipIig~GGI~s~~da~e~i~aGAs~VQv~Ta-v~~Gp~~~~~i~~~L~~~l~~~G~~si~e~~G~a 299 (301)
T PRK07259 223 LRMVYQVAKAV--DIPIIGMGGISTAEDAIEFMMAGASAVQVGTA-NFIDPYAFPEIIEGLEAYLDEEGIKSIEEIIGIA 299 (301)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCHH
T ss_conf 99999998516--98889767979999999999839879872123-3149069999999999999984999899971813
Q ss_pred CH
Q ss_conf 52
Q gi|254780434|r 354 TE 355 (362)
Q Consensus 354 ~~ 355 (362)
T Consensus 300 hr 301 (301)
T PRK07259 300 HK 301 (301)
T ss_pred CC
T ss_conf 29