HHsearch alignment for GI: 254780434 and conserved domain: PRK10550
>PRK10550 tRNA-dihydrouridine synthase C; Provisional.
Probab=99.61 E-value=1.3e-13 Score=111.54 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=121.8
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 000121000110454246788776555420675526983033365------32211000023432111122444556553
Q gi|254780434|r 131 QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN------TPGLRSLQKKKNLERLLIHVMQTREEEKI 204 (362)
Q Consensus 131 ~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN------t~g~~~~~~~~~l~~~l~~v~~~~~~~~~ 204 (362)
T Consensus 60 ~~~~Pv~vQl~G~d--pe~~a~aA~~~~e~--g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v----- 130 (312)
T PRK10550 60 PSGTLVRIQLLGQY--PQWLAENAARAVEL--GSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV----- 130 (312)
T ss_pred CCCCCEEEEEECCC--HHHHHHHHHHHHHC--CCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC-----
T ss_conf 77883688842788--89999999999976--9996625479997896689926853289779999999999745-----
Q ss_pred HCCCCCEEEEEC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 126885178650--577774888999998764498299980665553234577544632211356454246899999997
Q gi|254780434|r 205 KTGKFVPIFLKI--SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ 282 (362)
Q Consensus 205 ~~~~~~Pi~vKL--sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~ 282 (362)
T Consensus 131 --~~~iPVtvK~RlG~~~~-~~~~e~~~~~~~~G~~~ltvH~----RT~---------~q~y~~~~~d---w~~i~~~~~ 191 (312)
T PRK10550 131 --PAHLPVTVKVRLGWDSG-DRKFEIADAVQQAGATELVVHG----RTK---------EQGYRAEHID---WQAIGEIRQ 191 (312)
T ss_pred --CCCCCCEEEEECCCCCC-CHHHHHHHHHHHCCCCEEEEEC----CCH---------HHCCCCCCCC---HHHHHHHHH
T ss_conf --87899547753589986-3199999999973998799905----526---------5358998348---999999997
Q ss_pred HCCCCEEEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHCCCHHHHHHHH
Q ss_conf 4089748999678899999999998-399975452787706978999999
Q gi|254780434|r 283 RVGPKIAIIGTGGISSTKDALDKIM-AGANLIQLYSAMIYEGISLPKRII 331 (362)
Q Consensus 283 ~~~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~~~I~ 331 (362)
T Consensus 192 ~~--~iPvi~NGdI~s~~d~~~~~~~tg~dgvMiGRgal~n-P~l~~~i~ 238 (312)
T PRK10550 192 RL--TIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI-PNLSRVVK 238 (312)
T ss_pred HC--CCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHC-CHHHHHHH
T ss_conf 48--9989970795999999999871489999965855309-77999861