HHsearch alignment for GI: 254780434 and conserved domain: PRK11815
>PRK11815 tRNA-dihydrouridine synthase A; Provisional.
Probab=99.61 E-value=7.4e-14 Score=113.18 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=125.5
Q ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCC------CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 764100012100011045424678877655542067-55269830333653------22110000234321111224445
Q gi|254780434|r 127 LSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTINISSPNT------PGLRSLQKKKNLERLLIHVMQTR 199 (362)
Q Consensus 127 l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt------~g~~~~~~~~~l~~~l~~v~~~~ 199 (362)
T Consensus 58 l~~~~~E~Pv~vQl~G~dp--~~---la~Aa~i~~~~g~d~IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a- 131 (333)
T PRK11815 58 LAFDPEEHPVALQLGGSDP--AD---LAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA- 131 (333)
T ss_pred HHCCCCCCCEEEEECCCCH--HH---HHHHHHHHHHCCCCEECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHH-
T ss_conf 5069877987999747999--99---99999999873988535238998688732780178707999999999999873-
Q ss_pred HHHHHHCCCCCEEEEEC--CCCCC--HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCHH
Q ss_conf 56553126885178650--57777--48889999987644982999806655532345775446322113564---5424
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKI--SPDLS--EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSP---LFLK 272 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKL--sPd~~--~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~---i~~~ 272 (362)
T Consensus 132 --------~~~PVTvK~RlG~d~~d~~~~l~~f~~~~~~aG~~~i~vH----~R~--------a~l~Glspk~nR~ippl 191 (333)
T PRK11815 132 --------VSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDRFIVH----ARK--------AWLKGLSPKENREIPPL 191 (333)
T ss_pred --------CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----EHH--------HHHCCCCHHHHCCCCCH
T ss_conf --------4885357863167777528999999999997599889996----027--------87726787775058730
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 68999999974089748999678899999999998399975452787706978999999999
Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
T Consensus 192 ~~~~v~~lk~~~-p~ipvi~NGdI~s~~~~~~~l~~-~DGVMiGRga-~~nPwif~~id~~~ 250 (333)
T PRK11815 192 DYDRVYRLKRDF-PHLTIEINGGIKTLEEAKEHLQH-VDGVMIGRAA-YHNPYLLAEVDREL 250 (333)
T ss_pred HHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHC-CCEEEEHHHH-HCCCHHHHHHHHHH
T ss_conf 489999999766-78718845996999999999855-9962114867-55997899999998