HHsearch alignment for GI: 254780434 and conserved domain: TIGR01036
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=100.00 E-value=0 Score=773.27 Aligned_cols=349 Identities=44% Similarity=0.697 Sum_probs=335.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHHCCCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHC
Q ss_conf 999999975089678899999999620--------111046788963116888733599748534688867798887403
Q gi|254780434|r 6 HKLALRGLTHLDPEIAHHLSIVALKSG--------LLSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKL 77 (362)
Q Consensus 6 ~~~~~~~l~~~~pe~ah~~~~~~~~~~--------~~~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~ 77 (362)
T Consensus 1 Y~Lvr~~lF~lDpE~AH~~~~~~Lr~~~~~~F~~~L~r~~~~~~~P~L~~~vlG~~FpNPlGLAAGfDK~G~a~d~l~Am 80 (370)
T TIGR01036 1 YPLVRKLLFLLDPEKAHELVFQVLRLVAASPFLARLLRSLLGAKDPVLEVTVLGLKFPNPLGLAAGFDKDGEALDALGAM 80 (370)
T ss_pred CCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHCCCCCCHHHHHHHHHH
T ss_conf 95210141589977889999999864125640345578646888788643123410686133423799876699875641
Q ss_pred CCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH--------HHHCCCCCCEEECCCC--CH
Q ss_conf 6752410200136878998862688425554100002477777889998764--------1000121000110454--24
Q gi|254780434|r 78 GFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK--------IQPTSPIGINLGANKD--SK 147 (362)
Q Consensus 78 G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~--------~~~~~pi~vsI~~~~~--s~ 147 (362)
T Consensus 81 GFG~~EiGTVTp~pQ~GN~~PRlFRL~e~~~liNRmGFNN~G~~~l~~~~k~~qqkqakla~y~~piGiNiGKNK~t~~~ 160 (370)
T TIGR01036 81 GFGYLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADLLVERLKRFQQKQAKLARYKGPIGINIGKNKKTPAE 160 (370)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHH
T ss_conf 84247541205888667777864254557887632052056799999999986545420278985264324888666544
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 67887765554206755269830333653221100002343211112244455655312688517865057777488899
Q gi|254780434|r 148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDD 227 (362)
Q Consensus 148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ 227 (362)
T Consensus 161 ~a~~DY~~~~~~~~~~A~Y~~vN~SSPNTPgLR~LQ~~~~~~~LL~~~k~~~~~L~~~~~KY~P~~VKIAPDL~~~dl~~ 240 (370)
T TIGR01036 161 DAKEDYKACLRKVGPLADYLVVNVSSPNTPGLRDLQYKESLRDLLTAVKEETDGLRRVHRKYVPVLVKIAPDLSESDLLD 240 (370)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
T ss_conf 22668999999873210707886358897351324014358999999999999999861278857897268988213899
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC-CCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 999876449829998066555323-4577544-63221135645424689999999740897489996788999999999
Q gi|254780434|r 228 IAVEVLSHKVEGIIVSNTTLSRKG-VQCSDNH-EQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 228 ia~~a~~~g~dGiv~~NT~~~~~~-~~~~~~~-~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
T Consensus 241 IAd~~v~~~~dG~IATNTT~sR~~Gv~g~k~~r~~~GGLSGkPL~~kS~eiirrL~~~~~gr~piIgVGGI~~~~~A~Ek 320 (370)
T TIGR01036 241 IADSAVELGIDGIIATNTTVSRDLGVTGPKNSREETGGLSGKPLQKKSTEIIRRLYKELKGRLPIIGVGGISSAQNALEK 320 (370)
T ss_pred HHHHHHHCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf 99999871898489844510252002563214356789887514477899999999996495789962785747889999
Q ss_pred HHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 9839997545278770697899999999999999838997789616975
Q gi|254780434|r 306 IMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362)
Q Consensus 306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362)
T Consensus 321 I~AGASLlQ~YsgfIy~GP~l~k~i~~~i~~lL~~~GFgsv~eAiGad~ 369 (370)
T TIGR01036 321 IKAGASLLQIYSGFIYKGPPLVKEIVKEIEKLLKEDGFGSVKEAIGADR 369 (370)
T ss_pred HHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC
T ss_conf 9847124456423466771679999999999975179612244102356